Citrus Sinensis ID: 035621

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
Protein Sequence
LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVVKTGKAGNDSGGGVFEMYGEKLLDLSIKNTIELENVMTVAEKDRSKAIDML
Secondary Structure (PSIPRED)
cEEEcccccEEEEEcccccEEEEccccccEEEEcccccccEEEEEEccccccEEEEcccccccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccEEEEEccccccEEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEcccccccccccccccEEEEccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccccEEEEEEEcccccccccEEEEEccccccccEEEEcccccEEEEccccccEEEEEccccHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEEcccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEccccccccccEEEEEccccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccccccccccccccccccccEEEEcccccEEEEEcccccEEEEEcccccccccEEEEEcc
Coil and Loop (DISEMBL)
llhhlpcneviltsspegpitaynpssgailahfsgsrsprrgltfagkpfiaashispttgsgsvhlynlwsstplhnipvpepvaplattadgsylftgglsgnvyaisvpkgdilrsfsahdkpvsclkispdgsllisggddgviatVPIFqlvdehtddknpddLMLQKFVAHNDSVTAITCCIGsfnsiiiscsmdctckfwrllngthlstvtfpcaimglaldptetdffaagsdgLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATgiggsrgcgvvktgkagndsgggvFEMYGEKLLDLSIKNTIELENVMTVAEKDRSKAIDML
Flexible Loop (DISEMBL)
LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVVKtgkagndsgggVFEMYGEKLLDLSIKntielenvmtvaekdrskaidml
Low Complexity Region (SEG)
LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKispdgsllisggddgVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVVKTGKAGNDSGGGVFEMYGEKLLDLSIKNTIELENVMTVAEKDRSKAIDML
Disordered region (IsUnstruct)
*********VI******************IL************LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVVKTGKAGNDSGGGVFEMYGEKLLDLSIKNTIELENVMT*************
Disordered Region (DISOPRED)
LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVVKTGKAGNDSGGGVFEMYGEKLLDLSIKNTIELENVMTVAEKDR*******
Disordered Region (DISEMBL)
LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVVKTGKAGNDSGGGVFEMYGEKLLDLSIKNTIELENVMTVAEKDRSKAIDML
Disordered Region (DISPRO)
LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVVKTGKAGNDSGGGVFEMYGEKLLDLSIKNTIELENVMTVAEKDRSKAIDML
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVVKTGKAGNDSGGGVFEMYGEKLLDLSIKNTIELENVMTVAEKDRSKAIDML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	387	2.2.26 [Sep-21-2011]
Q68EI0	431	WD repeat-containing prot	yes	no	0.762	0.684	0.240	3e-21
Q3SZD4	432	WD repeat-containing prot	yes	no	0.754	0.675	0.258	9e-21
Q9BV38	432	WD repeat-containing prot	yes	no	0.775	0.694	0.242	4e-20
Q499N3	431	WD repeat-containing prot	yes	no	0.785	0.705	0.252	5e-20
Q4VBE8	431	WD repeat-containing prot	yes	no	0.728	0.654	0.253	6e-19
Q10272	446	Pre-rRNA-processing prote	yes	no	0.741	0.643	0.223	1e-14
Q4PHV3	587	Pre-rRNA-processing prote	N/A	no	0.439	0.289	0.295	2e-13
A5DNK9	451	Pre-rRNA-processing prote	N/A	no	0.677	0.580	0.265	1e-11
Q42384	486	Protein pleiotropic regul	no	no	0.506	0.403	0.239	8e-11
Q39190	479	Protein pleiotropic regul	no	no	0.490	0.396	0.240	1e-10

>sp|Q68EI0|WDR18_DANRE WD repeat-containing protein 18 OS=Danio rerio GN=wdr18 PE=2 SV=1

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 145/316 (45%), Gaps = 21/316 (6%)

Query: 9   EVILTSSPEGPI---TAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGS 65
           EV+L++   G +     Y+P +G+    + G  +  R LT     +I  + +    G   
Sbjct: 6   EVVLSADSAGQLFNCAVYDPHTGSEFLSYRGGNTSSRSLTILNGEYILGAQL----GKNY 61

Query: 66  VHLYNLWSSTPLHN-IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH 124
           ++++ +     L   I  P  V  L  + DG Y+   G++  +Y   V  G++L   S H
Sbjct: 62  INVWEIQRKDQLQQKIVCPGIVTCLCASPDGLYVL-AGIAEAIYLWEVSTGNLLAILSRH 120

Query: 125 DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTA 184
            + +SC+K + D S  +SGG D  +A +     V +    + P+   +     H+  +T 
Sbjct: 121 FQDLSCIKFTDDSSHFVSGGKDN-LAFIWNLSSVVQLDSSRTPEPRHI--LSRHSLPITD 177

Query: 185 ITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDG 244
           I C +    + + + S+D T K W + +G  L +V F   IM +  DP E   F  GSDG
Sbjct: 178 IHCGLMGPQARVATASLDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLFCGGSDG 237

Query: 245 LIYK------GLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVY 298
            I++       L + ++ Q   +G ++      H  +V  + +  +G  L+S + D +V 
Sbjct: 238 NIFQVSLCSTSLSRDKTFQSDSEGNQVF---KGHRNLVTCLSVSMDGTVLLSGSNDETVR 294

Query: 299 IWEIEKRQVVMVLKNE 314
           +W+++ +Q +  + + 
Sbjct: 295 MWDVQSKQCIWTINHR 310

Involved in left-right determination through controlling the correct clustering and migration of dorsal forerunner cells (DFCs) and Kupffer's vesicle formation.
Danio rerio (taxid: 7955)

>sp|Q3SZD4|WDR18_BOVIN WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1

 Score =  101 bits (252), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 138/306 (45%), Gaps = 14/306 (4%)

Query: 23  YNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-IP 81
           +   SGA L  + G ++  RGL      ++ A+ +    G   +  + L     L   I 
Sbjct: 23  WELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL----GKNYICAWELQRKDQLQQKIM 78

Query: 82  VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI 141
            P PV  L T+ +G Y+   G+S N+Y   V  G++L   S H + VSCL+ + D S  I
Sbjct: 79  CPGPVTCLTTSPNGLYVL-AGISENIYLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFI 137

Query: 142 SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM 201
           SGG D ++    +  ++     D +        +  H   +T + C  G   + + + S+
Sbjct: 138 SGGKDCLVLAWSLCSVLQA---DPSRTPAPRHVWSRHTLPITDLHCGFGGPLARVATASL 194

Query: 202 DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYK-GLLKY--QSRQQ 258
           D T K W + +G  L +V F   I+ + +D  E   F  GSDG I++  L  +  Q  + 
Sbjct: 195 DQTVKLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGGSDGSIFQVDLCTWPGQREKS 254

Query: 259 MHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGS 318
               QE   +   H   V  + +  +G  L+S + D +V +W+++ +Q +  +   L G 
Sbjct: 255 FQPEQEHGKVFRGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSQQCLRTVT--LKGP 312

Query: 319 ISEMVI 324
           ++   I
Sbjct: 313 VTNACI 318

May play a role during development.

Bos taurus (taxid: 9913)

>sp|Q9BV38|WDR18_HUMAN WD repeat-containing protein 18 OS=Homo sapiens GN=WDR18 PE=1 SV=2

 Score = 99.4 bits (246), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 145/318 (45%), Gaps = 18/318 (5%)

Query: 13  TSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW 72
           +++P      +   SGA L  + G ++  RGL      ++ A+ +    G   +  + L 
Sbjct: 13  SAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL----GKNYISAWELQ 68

Query: 73  SSTPLHN-IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCL 131
               L   I  P PV  L  + +G Y+   G++ +++   V  G++L   S H + VSCL
Sbjct: 69  RKDQLQQKIMCPGPVTCLTASPNGLYVL-AGVAESIHLWEVSTGNLLVILSRHYQDVSCL 127

Query: 132 KISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA--HNDSVTAITCCI 189
           + + D S  ISGG D ++    +  ++       +P  +   + V   H   +T + C  
Sbjct: 128 QFTGDSSHFISGGKDCLVLVWSLCSVLQ-----ADPSRIPAPRHVWSHHALPITDLHCGF 182

Query: 190 GSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYK- 248
           G   + + + S+D T K W + +G  L +V F  +IM + +D  E   F  GS+G I++ 
Sbjct: 183 GGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCGGSEGSIFQV 242

Query: 249 GLLKY--QSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306
            L  +  Q  +  H  Q+   +   H   V  + +  +G  L+S + D +V +W+++ +Q
Sbjct: 243 DLFTWPGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSKQ 302

Query: 307 VVMVLKNELAGSISEMVI 324
            +  +   L G ++   I
Sbjct: 303 CIRTVA--LKGPVTNAAI 318

May play a role during development.

Homo sapiens (taxid: 9606)

>sp|Q499N3|WDR18_RAT WD repeat-containing protein 18 OS=Rattus norvegicus GN=Wdr18 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 144/325 (44%), Gaps = 21/325 (6%)

Query: 9   EVILTSSPEGPITA---YNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGS 65
           EV++ +    P+ +   +   SGA L  + G ++  RGL      ++ A+      G   
Sbjct: 6   EVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ----QGKNY 61

Query: 66  VHLYNLWSSTPLHN-IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH 124
           +  + L     L   I  P PV  L T  +G Y+   G++ ++Y   V  G++L   S H
Sbjct: 62  ICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVL-AGIAESIYLWEVSTGNLLVILSRH 120

Query: 125 DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSV 182
            + VSCLK + DGS  +S G D ++    +  ++       +P  ++  + V   H   +
Sbjct: 121 YQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQ-----ADPSRILAPRHVWSQHTLPI 175

Query: 183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS 242
           T + C  G   + + + S+D T K W + +G  L +V F   I  + +D  E   F  GS
Sbjct: 176 TDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCGGS 235

Query: 243 DGLIYKGLLKYQ---SRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYI 299
           DG I++  L  +     Q     Q    +   H   V  + +  +G  L+S + D SV +
Sbjct: 236 DGSIFQVDLCSRPGPREQSFQPEQNTGKVFKGHRNQVTCLSVSTDGSILLSGSHDESVRL 295

Query: 300 WEIEKRQVVMVLKNELAGSISEMVI 324
           W+++ +Q V  +   L G ++   I
Sbjct: 296 WDVKSKQCVRTVP--LKGPVTNAAI 318

May play a role during development.

Rattus norvegicus (taxid: 10116)

>sp|Q4VBE8|WDR18_MOUSE WD repeat-containing protein 18 OS=Mus musculus GN=Wdr18 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 139/308 (45%), Gaps = 26/308 (8%)

Query: 27  SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-IPVPEP 85
           SGA L  + G ++  RGL      ++ A+      G   +  + L     L   I  P P
Sbjct: 27  SGANLLTYRGGQAGPRGLALLNGEYLLAAQ----QGKNYICAWELQRKDQLQQKIMCPGP 82

Query: 86  VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD 145
           V  L T  +G Y+   G++ ++Y   V  G++L   S H + VSCLK + DGS  +S G 
Sbjct: 83  VTCLTTAPNGLYVL-AGIAESIYLWEVCTGNLLVILSRHYQDVSCLKFTGDGSHFVSAGK 141

Query: 146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSVTAITCCIGSFNSIIISCSMDC 203
           D +     +  ++       +P  ++  + V   H   +T + C  G   + + + S+D 
Sbjct: 142 DCLALAWSLCSVLQ-----ADPSRILAPRHVWSQHTLPITDLHCGFGGPMARVATASLDQ 196

Query: 204 TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYK-------GLLKYQSR 256
           T K W + +G  L +V F   I  + +D  E   F  GSDG I++       GL ++  +
Sbjct: 197 TVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIFCGGSDGSIFQVDLCSWPGLREHSFQ 256

Query: 257 QQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA 316
            + + G+    +   H   V  + +  +G  L+S + D SV +W+++ +Q +  +   L 
Sbjct: 257 PEQNTGK----VFKGHRNQVTCLSVSTDGSVLLSGSHDESVRLWDVKSKQCLRTVT--LK 310

Query: 317 GSISEMVI 324
           G ++   I
Sbjct: 311 GPVTNAAI 318

May play a role during development.

Mus musculus (taxid: 10090)

>sp|Q10272|IPI3_SCHPO Pre-rRNA-processing protein crb3/ipi3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=crb3 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 138/322 (42%), Gaps = 35/322 (10%)

Query: 20  ITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN 79
           +  +N  +G +++ F  S   +          ++A H  P      ++++N        +
Sbjct: 18  VLCHNLHTGTLVSTFRQSSPAKNATCTTLNHLLSAQHTRP-----QLNIHNFGKEILDQS 72

Query: 80  IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL 139
           I +PE +  + ++  GS+L  G   GN+Y  S+  G ++  F AH +P++ LK S DG +
Sbjct: 73  IILPEILICVQSSPCGSWLAAGTEKGNLYIWSLKSGALIYFFRAHYQPLTILKFSNDGMV 132

Query: 140 LISGGDDGVIATVPIFQLVDEHT--DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS-II 196
           L +  +DG +    I  LVD+++  +  N     +  F  H  S+ ++    G   S  +
Sbjct: 133 LFTASNDGDVFAWLISTLVDQNSTFETSNSSVKAISHFSGHKRSIVSMEIGPGPIVSGRL 192

Query: 197 ISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLI----YKGLLK 252
            + S D T + W +  G  L+T+  P     + +DP+E   +     G+I    Y G   
Sbjct: 193 YTASEDNTIRIWDVSTGNLLTTIALPSTPSCMTVDPSERVVYVGNEKGIIWIPLYTGSST 252

Query: 253 YQSRQQMHKGQELV---TLANRHDGV--------------------VVSVMMMNEGKNLV 289
           + +  +  K    V   T+ N   G+                    + ++ +  +   L+
Sbjct: 253 FSNNVKEKKRVTSVDNTTIPNAIGGMGRVVDYNDSRESSIISCQSPITTLTVSFDASLLI 312

Query: 290 SAAEDGSVYIWEIEKRQVVMVL 311
           S  +DG+V +W+   RQV+  L
Sbjct: 313 SGDKDGNVLVWDSVSRQVLRRL 334

Involved in the processing of ITS2 sequences from 35S pre-rRNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4PHV3|IPI3_USTMA Pre-rRNA-processing protein IPI3 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=IPI3 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 16/186 (8%)

Query: 77  LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD 136
           L  I +P  ++ +A + +G  +  G   G +    +  GD+L SF AH + V+ LK + D
Sbjct: 97  LQRIILPSKLSCIACSPNGDLVAGGSFDGRILLWQIATGDLLASFDAHYRSVTVLKWTCD 156

Query: 137 GSLLISGGDDGVIATVPIFQLVDEH--------TDDKNPDDLMLQKFVAHNDSVTAITCC 188
           G+ L++G +D  I    +  L+  H        + + NP          HN ++T +   
Sbjct: 157 GAGLLTGSEDARILVWSLAGLLAPHDQTSSSITSSEHNPAPYC--TLADHNLAITDLDIS 214

Query: 189 IGSF--NSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA----GS 242
            G F   ++++S S D + K W L   + LST  F   I  + LD TE  FFAA     S
Sbjct: 215 SGRFPHQAMVLSSSSDASVKLWDLRTRSLLSTFVFEQPIHRVVLDCTERFFFAATAPTSS 274

Query: 243 DGLIYK 248
           D L+Y+
Sbjct: 275 DNLVYR 280

Involved inthe processing of ITS2 sequences from 35S pre-rRNA.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|A5DNK9|IPI3_PICGU Pre-rRNA-processing protein IPI3 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=IPI3 PE=3 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 133/301 (44%), Gaps = 39/301 (12%)

Query: 66  VHLYNLWSSTPLHNIPVPEPVAPLATTADGS--------------YLFTGG-LSGNVYAI 110
           + +Y+    +P   IPVPEP+  +A     S              +L  GG  SG +Y  
Sbjct: 60  ITVYSWGKESPDQRIPVPEPLTCMALCKHPSNEKINHKVPTFQLPWLLAGGSASGKLYIW 119

Query: 111 SVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV--DEHTDDKNPD 168
            +  G+++    AH + ++ LK S  G+ L+SGG D   +      LV  D+    K   
Sbjct: 120 ELSSGNLVCVKEAHYQAINVLKFSECGTYLVSGGADARCSVWKTLDLVTIDDPETQKTAS 179

Query: 169 DLMLQKFVAHNDSVTAITCCIGSFNSI-IISCSMDCTCKFWRLLNGTHLSTVTFPCAIMG 227
            L    F+ H  +VT I    G  + I + S S D T + + + +G  ++T   P ++  
Sbjct: 180 ALT---FMDHTLAVTDIWLTTGIRSDIRLYSSSKDGTVRNYDITSGKLITTFVLPLSVEC 236

Query: 228 LALDPTETDFFAAGSDGLIYKGLLKYQSR------QQMHKGQELVTLAN----RHDGV-- 275
           LA+DP     +A  SDG I + +L+Y+        + +    ++VTLA     R   V  
Sbjct: 237 LAVDPAGRACYAGLSDGTI-RTVLQYKVNPHTSVLEAVGGNGKVVTLATDPELRESFVHH 295

Query: 276 ----VVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGS 331
               V SV +  +G  ++S+ E G V + +    QVV  L    +  I  + + T + GS
Sbjct: 296 QPHRVTSVKVSLDGTTIISSDESGRVMVADAVTTQVVKALSPATSPVIY-LAVDTVVAGS 354

Query: 332 R 332
           +
Sbjct: 355 Q 355

Component of the RIX1 complex required for processing of ITS2 sequences from 35S pre-rRNA.

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

>sp|Q42384|PRL1_ARATH Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana GN=PRL1 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 25/221 (11%)

Query: 84  EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISG 143
           E V  LA +   +Y+F+ G    V    + +  ++RS+  H   V CL + P   +L++G
Sbjct: 219 EQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTG 278

Query: 144 GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC 203
           G D V       ++ D  T         +Q F       T  +      +  +++ S D 
Sbjct: 279 GRDSVC------RVWDIRTK--------MQIFALSGHDNTVCSVFTRPTDPQVVTGSHDT 324

Query: 204 TCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG 262
           T KFW L  G  +ST+T    ++  + L P E  F +A +D      L K +    M   
Sbjct: 325 TIKFWDLRYGKTMSTLTHHKKSVRAMTLHPKENAFASASADNTKKFSLPKGEFCHNMLSQ 384

Query: 263 QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303
           Q+           +++ M +NE   +V+  ++GS++ W+ +
Sbjct: 385 QK----------TIINAMAVNEDGVMVTGGDNGSIWFWDWK 415

Pleiotropic regulator of glucose, stress and hormone responses. Also regulates cytochrome P450 CYP90A1/CPD. Coordinates the expression of hormone- and stress-related genes and genes related to cell wall modification and growth, leading to altered sugar-dependent growth and developmental responses. Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. By suppressing the expression of several (1)O(2)-responsive genes, PRL1 seems to play a major role in modulating responses of plants to environmental changes by interconnecting (1)O(2)-mediated retrograde signaling with other signaling pathways. Acts as negative regulator of SNF1-related protein kinases AKIN10 and AKIN11 via the inhibition of their interaction with SKP1/ASK1. Component of the CUL4-RBX1-DDB1-PRL1 E3 ubiquitin-protein ligase complex, PRL1 may function as the substrate recognition module within this complex, leading to the AKIN10 degradation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39190|PRL2_ARATH Protein pleiotropic regulator PRL2 OS=Arabidopsis thaliana GN=PRL2 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 26/216 (12%)

Query: 89  LATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGV 148
           LA +   +Y+F+ G    V    + +  ++RS+  H   V CL + P   ++++GG D V
Sbjct: 218 LAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLHGVYCLALHPTLDVVLTGGRDSV 277

Query: 149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFW 208
                I                 +Q FV  +DS    +      +  +I+ S D T KFW
Sbjct: 278 CRVWDI--------------RTKMQIFVLPHDS-DVFSVLARPTDPQVITGSHDSTIKFW 322

Query: 209 RLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVT 267
            L  G  ++T+T     +  +AL P E DF +A +D +    L K +    M        
Sbjct: 323 DLRYGKSMATITNHKKTVRAMALHPKENDFVSASADNIKKFSLPKGEFCHNM-------- 374

Query: 268 LANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303
           L+ + D  +++ + +NE   +V+  + G ++ W+ +
Sbjct: 375 LSLQRD--IINAVAVNEDGVMVTGGDKGGLWFWDWK 408

Pleiotropic regulator.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
255582679	411	WD-repeat protein, putative [Ricinus com	0.976	0.919	0.568	1e-113
449439069	412	PREDICTED: WD repeat-containing protein	0.958	0.900	0.528	1e-109
449483295	374	PREDICTED: WD repeat-containing protein	0.914	0.946	0.533	1e-105
359493978	411	PREDICTED: WD repeat-containing protein	0.940	0.885	0.525	1e-103
356562253	417	PREDICTED: WD repeat-containing protein	0.956	0.887	0.484	6e-94
302142817	375	unnamed protein product [Vitis vinifera]	0.850	0.877	0.480	2e-91
125564110	445	hypothetical protein OsI_31763 [Oryza sa	0.790	0.687	0.375	3e-48
52077346	443	transducin / WD-40 repeat protein family	0.790	0.690	0.375	4e-48
449447253	451	PREDICTED: WD repeat-containing protein	0.780	0.669	0.330	2e-39
224137550	446	predicted protein [Populus trichocarpa]	0.780	0.677	0.336	2e-39

>gi|255582679|ref|XP_002532118.1| WD-repeat protein, putative [Ricinus communis] gi|223528198|gb|EEF30258.1| WD-repeat protein, putative [Ricinus communis]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/380 (56%), Positives = 277/380 (72%), Gaps = 2/380 (0%)

Query: 8   NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVH 67
           +E++LTSSP+GPITAY+  SG  LA F+GSRSPR GL   GK +IAASHIS  T SGS+H
Sbjct: 6   HEIVLTSSPDGPITAYDTISGTTLARFTGSRSPRHGLAIVGKAYIAASHISSATASGSIH 65

Query: 68  LYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP 127
           LY  WSS+ LH++P+PEPVAPLA T DGSYLF GGL GNVYA+S+P G+IL+SF AH KP
Sbjct: 66  LYTWWSSSALHHLPLPEPVAPLAATPDGSYLFAGGLFGNVYALSIPSGNILKSFPAHSKP 125

Query: 128 VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187
           VSC+ IS D SLLISGGDDG I  VPIFQLV E    +N  +L+L  F AH+  VT IT 
Sbjct: 126 VSCINISSDSSLLISGGDDGNIVVVPIFQLV-EAPGSENESNLILHSFPAHDGPVTGITV 184

Query: 188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY 247
           C+G  +  I+SCS D TCK W LL+G +L TV FPC+I G+ALDPTE +F+AAGS+GLIY
Sbjct: 185 CMGICHPTIVSCSTDSTCKLWSLLDGRNLQTVAFPCSISGIALDPTEVEFYAAGSNGLIY 244

Query: 248 KGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV 307
           KG L+  SR+ + +G++L+T   +HDG VVSV+++NEGKNLVSAAEDGSV+IW IE  Q+
Sbjct: 245 KGSLQAGSRKGIAQGRKLITWTQKHDGAVVSVVVINEGKNLVSAAEDGSVFIWGIENGQL 304

Query: 308 VMVLKNELAGSISEMVIATGIGGSRGCGVVKTGKAGNDSGGGVFEMYGEKLLDLSIKNTI 367
           +MV+ N +  +IS++V+A GI   R     + G   N+ GG    +  ++L    IK+T+
Sbjct: 305 IMVIGNNM-DNISDVVVARGICDGREGYGNRVGNEMNEFGGRNLGLSSKELNFRPIKDTV 363

Query: 368 ELENVMTVAEKDRSKAIDML 387
            +EN + VA K+  KAID L
Sbjct: 364 NVENALAVAAKNSRKAIDKL 383

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439069|ref|XP_004137310.1| PREDICTED: WD repeat-containing protein 18-like [Cucumis sativus]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/386 (52%), Positives = 273/386 (70%), Gaps = 15/386 (3%)

Query: 8   NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVH 67
            EV+L SSP+GPI AY+ S+G  LA F+ SRSPRRG+T AGK FIA SHI P T SGS+H
Sbjct: 6   QEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVTASGSIH 65

Query: 68  LYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP 127
           +YN W+S+    + VPEPVAPL  T DG YLF GGLSG ++ +S+P GD+L S  AH KP
Sbjct: 66  IYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLPAHKKP 125

Query: 128 VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187
           VSCLK+S DGSLLISGGDDG I  +PIFQLV     + N  + +L +F+AH DSVT+I  
Sbjct: 126 VSCLKLSADGSLLISGGDDGTIVVMPIFQLVQAKPRE-NATEHILHQFLAHTDSVTSIYS 184

Query: 188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY 247
            +G  ++ I+SCS+D  CK W LL+GT L TV FPCAI  + L+P+ET+FFAAGSDGL+Y
Sbjct: 185 GMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAGSDGLVY 244

Query: 248 KGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV 307
           KG L + ++++     EL+  + +H+  VVS++++NEGK+L+SAAEDGS+++WE++K QV
Sbjct: 245 KGSLGHNNKRRRGTSSELIPWSTKHEAAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQV 304

Query: 308 VMVLKNELAGSISEMVIATGIG-GSRGCGVVKTGKAGNDSGGGVFEMYGE-----KLLDL 361
           +M L+NE+ GSIS++V+AT    G   C  VKT     DS GG  E+        K+L L
Sbjct: 305 IMALENEM-GSISDLVMATERSHGKEQC--VKT-----DSHGGAMEISERFRLPIKMLGL 356

Query: 362 SIKNTIELENVMTVAEKDRSKAIDML 387
           SIK T+E++  +  A  D S+AI+ML
Sbjct: 357 SIKQTVEMQGEVGAAGSDVSRAIEML 382

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483295|ref|XP_004156548.1| PREDICTED: WD repeat-containing protein 18-like [Cucumis sativus]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/369 (53%), Positives = 264/369 (71%), Gaps = 15/369 (4%)

Query: 8   NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVH 67
            EV+L SSP+GPI AY+ S+G  LA F+ SRSPRRG+T AGK FIA SHI P T SGS+H
Sbjct: 6   QEVVLASSPDGPIVAYDASTGTHLASFNSSRSPRRGITRAGKSFIAVSHICPVTASGSIH 65

Query: 68  LYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP 127
           +YN W+S+    + VPEPVAPL  T DG YLF GGLSG ++ +S+P GD+L S  AH KP
Sbjct: 66  IYNWWTSSAFQCLTVPEPVAPLTATPDGFYLFAGGLSGYIHILSLPSGDVLNSLPAHKKP 125

Query: 128 VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187
           VSCLK+S DGSLLISGGDDG I  +PIFQLV +    +N  + +L +F+AH DSVT+I  
Sbjct: 126 VSCLKLSADGSLLISGGDDGTIVVMPIFQLV-QAKPRENATEHILHQFLAHTDSVTSIYS 184

Query: 188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY 247
            +G  ++ I+SCS+D  CK W LL+GT L TV FPCAI  + L+P+ET+FFAAGSDGL+Y
Sbjct: 185 GMGISSTQIVSCSLDGRCKLWNLLSGTILHTVVFPCAIFSVVLEPSETEFFAAGSDGLVY 244

Query: 248 KGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV 307
           KG L + ++++     EL+  + +H+  VVS++++NEGK+L+SAAEDGS+++WE++K QV
Sbjct: 245 KGSLGHNNKRRRGTSSELIPWSTKHEAAVVSIVIVNEGKHLISAAEDGSIWVWEVKKGQV 304

Query: 308 VMVLKNELAGSISEMVIATGIG-GSRGCGVVKTGKAGNDSGGGVFEMYGE-----KLLDL 361
           +M L+NE+ GSIS++V+AT    G   C  VKT     DS GG  E+        K+L L
Sbjct: 305 IMALENEM-GSISDLVMATERSHGKEQC--VKT-----DSHGGAMEISERFRLPIKMLGL 356

Query: 362 SIKNTIELE 370
           SIK T+E++
Sbjct: 357 SIKQTVEMQ 365

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493978|ref|XP_002283662.2| PREDICTED: WD repeat-containing protein 18 [Vitis vinifera]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/386 (52%), Positives = 264/386 (68%), Gaps = 22/386 (5%)

Query: 9   EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHL 68
           E++LTSSP+GPI AY+P SGAI+AHF+GSRSP +GLT AGK  IAASHIS  TG+GS++L
Sbjct: 7   EIVLTSSPDGPIIAYDPYSGAIIAHFTGSRSPPKGLTLAGKGLIAASHIS-ATGAGSINL 65

Query: 69  YNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPV 128
           YN WSS   +++P+PEPVAPLA T DG+YLF GGLSG++Y+IS+P G  +++F AH K V
Sbjct: 66  YNWWSSAVFNHLPLPEPVAPLAATLDGAYLFAGGLSGHIYSISLPSGKTIQTFPAHSKSV 125

Query: 129 SCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC 188
           SCL+I+ DGSLLISG DDG I   PIFQLV   +  KNP +     FV H  SVT I   
Sbjct: 126 SCLEINDDGSLLISGSDDGSIVVAPIFQLVAT-SPGKNPGNFASHCFVGHASSVTTIR-- 182

Query: 189 IGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYK 248
           IG  NS +ISCS D TCKFW L  G  L TV  PC + GLA+DPTE+ F+AAGSDG IY 
Sbjct: 183 IGPCNSTMISCSADGTCKFWSLPQGLLLRTVALPCPMAGLAIDPTESHFYAAGSDGSIYI 242

Query: 249 GLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV 308
           G  K  +RQ   +  +++    +H G VVS+ M+N+G+NLVS +EDG+V+IWE+EK QV+
Sbjct: 243 GATKSPTRQLTKRNLQVIKWREKHGGPVVSLAMLNQGRNLVSGSEDGNVWIWEVEKGQVM 302

Query: 309 MVLKNELAGSISEMVIATGIGGSRGCGVVKTGKAGNDSGGGV-FEMYGEKL------LDL 361
            VL NE+  SIS++V+A G+  SR          G+ S  G+  E + EK       L  
Sbjct: 303 TVLGNEMV-SISDLVMARGVANSR----------GSSSNLGINMEEWREKSGLAARELSR 351

Query: 362 SIKNTIELENVMTVAEKDRSKAIDML 387
            ++   E++  + VA KDRS+AID+L
Sbjct: 352 PVRKMEEMKEKLGVAVKDRSRAIDIL 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562253|ref|XP_003549386.1| PREDICTED: WD repeat-containing protein 18-like [Glycine max]

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 187/386 (48%), Positives = 258/386 (66%), Gaps = 16/386 (4%)

Query: 9   EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHL 68
           E+ILT+SP+GPIT Y  ++G ++A FSGSRSP RGLT  G+   AASH+S  TG+GS+++
Sbjct: 7   ELILTNSPDGPITVYETTTGTVVARFSGSRSPCRGLTVVGRRLFAASHVSSETGAGSINI 66

Query: 69  YNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPV 128
           YN ++ST  HN PVPEPVAPL  T DG++LF GG+SG++++IS   GD++RS +AH + V
Sbjct: 67  YNWFNSTAFHNFPVPEPVAPLIATHDGTFLFGGGISGSLFSISTHSGDVIRSIAAHSRSV 126

Query: 129 SCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD-DKNPDDLMLQKFVAHNDSVTAITC 187
           S L +S DGSL+ISG DDG I  VP F++V      D++ +DL+L K+ AH+DSVTA   
Sbjct: 127 SSLHLSDDGSLVISGSDDGTIVVVPTFKIVIIRASLDEDMEDLILHKWKAHSDSVTAFKS 186

Query: 188 CIGSFNSIIISCSMDCTCKFWRL-LNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLI 246
            +G+    ++SCS+DCTCKFW L  NG  L  V FPCAI G+ALD     F+ AG+DGL+
Sbjct: 187 VMGT----LLSCSLDCTCKFWNLGDNGVLLRIVAFPCAIFGIALDSKGLGFYVAGADGLV 242

Query: 247 YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306
           YKG +K  SR+ + +  EL T +  H   +VS+ ++NEG+NLVSAAEDGSV++W+++K +
Sbjct: 243 YKGAMKAGSRKLLSRVCELSTWSKSHGRSIVSLALVNEGRNLVSAAEDGSVWMWDVDKGE 302

Query: 307 VVMVLKNELAG-SISEMVIATGIGGSRGCGVVKTGKAGNDSGGGVFEMYGEKLLDLSIKN 365
           VVM + NE+   +IS+MV+A G G     GV K      + G G F  YG  L D  +  
Sbjct: 303 VVMDMGNEVVMVNISDMVVARGNG---EFGVRKGNNVAIEEGNGSFTSYG--LCDEEMIK 357

Query: 366 TIE----LENVMTVAEKDRSKAIDML 387
           T+E    L  V    E+ + K I ML
Sbjct: 358 TLEQITKLGEVRGEVEQHKKKVIGML 383

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142817|emb|CBI20112.3| unnamed protein product [Vitis vinifera]

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 185/385 (48%), Positives = 244/385 (63%), Gaps = 56/385 (14%)

Query: 9   EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHL 68
           E++LTSSP+GPI AY+P SGAI+AHF+GSRSP +GLT AGK  IAASHIS  TG+GS++L
Sbjct: 7   EIVLTSSPDGPIIAYDPYSGAIIAHFTGSRSPPKGLTLAGKGLIAASHIS-ATGAGSINL 65

Query: 69  YNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPV 128
           YN WSS   +++P+PEPVAPLA T DG+YLF GGLSG++Y+IS+P G  +++F AH K V
Sbjct: 66  YNWWSSAVFNHLPLPEPVAPLAATLDGAYLFAGGLSGHIYSISLPSGKTIQTFPAHSKSV 125

Query: 129 SCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC 188
           SCL+I+ DGSLLISG DDG I   PIFQLV                              
Sbjct: 126 SCLEINDDGSLLISGSDDGSIVVAPIFQLV------------------------------ 155

Query: 189 IGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYK 248
                    + S D TCKFW L  G  L TV  PC + GLA+DPTE+ F+AAGSDG IY 
Sbjct: 156 ---------ATSPDGTCKFWSLPQGLLLRTVALPCPMAGLAIDPTESHFYAAGSDGSIYI 206

Query: 249 GLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV 308
           G  K  +RQ   +  +++    +H G VVS+ M+N+G+NLVS +EDG+V+IWE+EK QV+
Sbjct: 207 GATKSPTRQLTKRNLQVIKWREKHGGPVVSLAMLNQGRNLVSGSEDGNVWIWEVEKGQVM 266

Query: 309 MVLKNELAGSISEMVIATGIGGSRGCGVVKTGKAGNDSGGGVFEMYGEK------LLDLS 362
            VL NE+  SIS++V+A G+  SRG          + + G   E + EK       L   
Sbjct: 267 TVLGNEMV-SISDLVMARGVANSRGS---------SSNLGINMEEWREKSGLAARELSRP 316

Query: 363 IKNTIELENVMTVAEKDRSKAIDML 387
           ++   E++  + VA KDRS+AID+L
Sbjct: 317 VRKMEEMKEKLGVAVKDRSRAIDIL 341

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125564110|gb|EAZ09490.1| hypothetical protein OsI_31763 [Oryza sativa Indica Group]

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 126/336 (37%), Positives = 183/336 (54%), Gaps = 30/336 (8%)

Query: 8   NEVILTSSPEGPITAYNPSSGAILAHFSGS-RSPRRGLTFAGKPFIAA-----SHISPTT 61
            E+IL +    P+TAY+  SG ++A F     + R GL     P  AA     SH+ P T
Sbjct: 16  GELILAACHGRPVTAYDAVSGHVVAEFPAPVNTSRHGLAVVAAPGAAAPFVAASHVCPVT 75

Query: 62  GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADG---SYLFTGGLSGNVYAISVPKGDIL 118
           G+GSV L + WS  P  ++PVPEPVAPL     G   S L  GGLSG V+AI++P GD+ 
Sbjct: 76  GAGSVLLLHWWSRAPARSLPVPEPVAPLVAAPRGGSHSQLLAGGLSGRVHAIALPSGDVA 135

Query: 119 RSFSAH--DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDD---LMLQ 173
           RSF AH    PVSCL++S DGSLL+SGG DG +A   +  ++D   D  +      L L 
Sbjct: 136 RSFRAHGGSAPVSCLELSDDGSLLVSGGYDGEVAVFVLLSVLDVDADADDASVSADLSLY 195

Query: 174 KFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPT 233
           +  AH   VT + C  G  ++++ + SMD TCK W L +G+HL T+T PC    L LD  
Sbjct: 196 RVPAHAAPVTCVACGRGGCDAVVATASMDGTCKVWTLKDGSHLRTLTLPCTAFSLTLDHL 255

Query: 234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH-----DGVVVSVMMMNEGKNL 288
               FA GSDG ++   L   +          +T ++ H     +  +V V M N  KNL
Sbjct: 256 AARLFAGGSDGRVHVASLSPAA----------ITSSSWHASGNTNAALVGVGMANGSKNL 305

Query: 289 VSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVI 324
           V+  EDG V +W+I    +++     ++G+++++++
Sbjct: 306 VTCTEDGEVSVWDIPS-GLLLAASFRISGAVTDVMV 340

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52077346|dbj|BAD46387.1| transducin / WD-40 repeat protein family -like protein [Oryza sativa Japonica Group] gi|125606080|gb|EAZ45116.1| hypothetical protein OsJ_29753 [Oryza sativa Japonica Group]

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 126/336 (37%), Positives = 184/336 (54%), Gaps = 30/336 (8%)

Query: 8   NEVILTSSPEGPITAYNPSSGAILAHFSGS-RSPRRGLTFAGKPFIAA-----SHISPTT 61
            E+IL +    P+TAY+  SG ++A F     + R GL     P  AA     SH+ P T
Sbjct: 18  GELILAACHGRPVTAYDAVSGHVVAEFPAPVNTSRHGLAVVAAPGAAAPFVAASHVCPVT 77

Query: 62  GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADG---SYLFTGGLSGNVYAISVPKGDIL 118
           G+GSV L + WS  P  ++PVPEPVAPL     G   S+L  GGLSG V+AI++P GD+ 
Sbjct: 78  GAGSVLLLHWWSRAPARSLPVPEPVAPLVAAPRGGSHSHLLAGGLSGRVHAIALPSGDVA 137

Query: 119 RSFSAH--DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDD---LMLQ 173
           RSF AH    PVSCL++S DGSLL+SGG DG +A   +  ++D   D  +      L L 
Sbjct: 138 RSFRAHGGSAPVSCLELSDDGSLLVSGGYDGEVAVFVLLSVLDVDADADDASVSADLSLY 197

Query: 174 KFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPT 233
           +  AH   VT + C  G  ++++ + SMD TCK W L +G+HL T+T PC    L LD  
Sbjct: 198 RVPAHAAPVTCVACGRGGCDAVVATASMDGTCKVWTLKDGSHLRTLTLPCTAFSLTLDHL 257

Query: 234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH-----DGVVVSVMMMNEGKNL 288
               FA GSDG ++   L   +          +T ++ H     +  +V V M N  KNL
Sbjct: 258 AARLFAGGSDGRVHVASLSPAA----------ITSSSWHASGNTNAALVGVGMANGSKNL 307

Query: 289 VSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVI 324
           V+  EDG V +W+I    +++     ++G+++++++
Sbjct: 308 VTCTEDGEVSVWDIPS-GLLLDASFRISGAVTDVMV 342

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447253|ref|XP_004141383.1| PREDICTED: WD repeat-containing protein 18-like [Cucumis sativus] gi|449531442|ref|XP_004172695.1| PREDICTED: WD repeat-containing protein 18-like [Cucumis sativus]

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 153/306 (50%), Gaps = 4/306 (1%)

Query: 10  VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHIS-PTTGSGSVHL 68
           ++ +SS +  I  ++  +G+    +    SP  GL   G+ F+A S +  P   +GSV L
Sbjct: 4   LVASSSIDSGIGCWDLHTGSEQLRYKSCASPPHGLVCVGRKFLACSQLRDPAATAGSV-L 62

Query: 69  YNLWSSTPLHNIPVP-EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP 127
           Y  WS   +     P EP+  LA+  +G+Y+  GG SG++Y   V  G +L+ + AH + 
Sbjct: 63  YWSWSKPQVEVKSFPAEPIMALASNHEGTYIVGGGFSGDIYLWEVLSGRLLKKWHAHYRA 122

Query: 128 VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187
           V+CL  S D SLL+SG +DG I    +  + D+    +    L    F  HN  VT I  
Sbjct: 123 VTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQ-REAKHLYEHSFTGHNLPVTDIVV 181

Query: 188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY 247
             G FN+IIIS S+D TCK W L  G  L  + FP  I  +ALDP E  F+  G DG IY
Sbjct: 182 GYGGFNAIIISSSVDRTCKVWSLSKGKLLRNIIFPSIIDAIALDPGEHVFYGGGRDGKIY 241

Query: 248 KGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV 307
              L  +       G  ++   +     V S+   + G  L+S +EDG++ +W+     V
Sbjct: 242 TAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLISGSEDGAIRVWDTRTNNV 301

Query: 308 VMVLKN 313
           + V ++
Sbjct: 302 IRVFRH 307

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137550|ref|XP_002327154.1| predicted protein [Populus trichocarpa] gi|222835469|gb|EEE73904.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 153/306 (50%), Gaps = 4/306 (1%)

Query: 10  VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHIS-PTTGSGSVHL 68
           VI +SS +G I  ++  +G     +    SP  GL   G+ F+A+S +  P   SG++ L
Sbjct: 5   VIASSSIDGGIGCWDLQTGTEHLRYKSCASPPHGLISVGRRFLASSQLQDPKASSGAI-L 63

Query: 69  YNLWSSTPLHNIPVPE-PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP 127
           Y  WS   +     PE P+ PL   ++G+YL  GGLSGN+Y   V  G +L+ + AH + 
Sbjct: 64  YWSWSRPQVEVKCFPEEPIKPLVANSEGTYLVGGGLSGNIYFWEVATGRLLKKWRAHYRA 123

Query: 128 VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187
           V+CL  + D SLL+SG +DG +   P+  + D++  ++    L    F  H   VT I  
Sbjct: 124 VTCLVFTEDDSLLVSGSEDGSVRVWPLLMIFDDYQMEQ-ASQLYEHSFQEHTLRVTDIVT 182

Query: 188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY 247
             G  N+IIIS S D TCK W L  G  L  + FP  I  + LDP E  F+A G DG I+
Sbjct: 183 GYGGGNAIIISASEDRTCKVWSLSKGILLRNIVFPSIIDSITLDPGEHVFYAGGRDGKIH 242

Query: 248 KGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV 307
              L   S         ++   + H   V  +     G  L+S +EDG + +W+ +   +
Sbjct: 243 IAALGADSSSIKSHWLHIIGSLSSHSKNVTCLAYSTNGNVLLSGSEDGMIRVWDPKTHNI 302

Query: 308 VMVLKN 313
           V V K+
Sbjct: 303 VRVFKH 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	387
DICTYBASE|DDB_G0288659	560	wdr18 "WD40 repeat-containing	0.602	0.416	0.280	4.7e-34
TAIR|locus:2082891	438	RID3 "AT3G49180" [Arabidopsis	0.795	0.703	0.296	3.7e-32
ZFIN|ZDB-GENE-040905-4	431	wdr18 "WD repeat domain 18" [D	0.790	0.709	0.226	8.8e-17
RGD|1310646	431	Wdr18 "WD repeat domain 18" [R	0.793	0.712	0.238	2.7e-16
UNIPROTKB|Q3SZD4	432	WDR18 "WD repeat-containing pr	0.744	0.666	0.238	2.7e-16
UNIPROTKB|Q9BV38	432	WDR18 "WD repeat-containing pr	0.793	0.710	0.223	8e-16
MGI|MGI:2158400	431	Wdr18 "WD repeat domain 18" [M	0.728	0.654	0.233	7e-15
POMBASE|SPAC13G7.08c	446	crb3 "WD repeat protein Crb3"	0.573	0.497	0.224	3.3e-10
ASPGD|ASPL0000074691	573	AN4771 [Emericella nidulans (t	0.648	0.438	0.242	8e-10
UNIPROTKB|G5EGX7	462	MGCH7_ch7g852 "WD repeat-conta	0.596	0.5	0.217	1.4e-05

DICTYBASE|DDB_G0288659 wdr18 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 302 (111.4 bits), Expect = 4.7e-34, Sum P(2) = 4.7e-34
 Identities = 68/242 (28%), Positives = 113/242 (46%)

Query:     8 NEVI-LTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSV 66
             +EVI +TS  +  +  Y+  +G ++A F+ + +   G    G  + A S  +       +
Sbjct:    40 SEVIAITSKEDSSLFIYDLRNGNLIATFNNTNNDTNGFCTIGSEYFATSQAN----KAMI 95

Query:    67 HLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDK 126
             ++YN     P++  P+ E   P+  ++DG+YL  G  SG VY   V  G +LR + AH  
Sbjct:    96 NIYNWKKDQPIYKTPIQEKSGPICCSSDGNYLVMGSASGMVYLWEVSTGTLLRMWEAHYN 155

Query:   127 PVSCLKXXXXXXXXXXXXXXXVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAIT 186
              +SC+                +I      Q +D         +     F  H+  +T+I 
Sbjct:   156 KISCITFTKDDFYIITAGDDGIINCWSFEQCLDRDVSLLRARN----SFSDHSLGITSIV 211

Query:   187 CCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLI 246
             C  G  NS + S S+D TCK W L+ G  ++++ FP  +  + LD TET  +  G DG+I
Sbjct:   212 CSFGGCNSRLFSVSLDRTCKIWDLVTGRCINSIIFPTYLTSVCLDSTETTCYVGGGDGII 271

Query:   247 YK 248
             Y+
Sbjct:   272 YQ 273

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2082891 RID3 "AT3G49180" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 95/320 (29%), Positives = 148/320 (46%)

Query:    10 VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLY 69
             VI +SS +  I +++  +G     F    SP  GLT  G+ F+A+S +S    SGS+  +
Sbjct:     5 VIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYW 64

Query:    70 NLWSS--TPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP 127
             + W+     + + PV EP+  LA   +G+YL  GG+SG++Y   V  G +L+ +  H + 
Sbjct:    65 S-WTKPQAEVKSYPV-EPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRS 122

Query:   128 VSCLKXXXXXXXXXXXXXXXVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC 187
             V+CL                 I    + +L D+    +  + L    F  H  SVT I  
Sbjct:   123 VTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQG-NTLYEHNFNEHTMSVTDIVI 181

Query:   188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY 247
               G  N++IIS S D TCK W L  G  L  + FP  I  LALDP    F+A   D  IY
Sbjct:   182 DYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIY 241

Query:   248 KGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV 307
              G +   S      G +++   +     +  +    +G  L+S +EDG V +W+ +  + 
Sbjct:   242 IGAINATSEY----GTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKSLRH 297

Query:   308 VMVL---KNELAGSISEMVI 324
             V  L   K    G ++ + I
Sbjct:   298 VRTLIHAKGSRKGPVNNIQI 317

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

ZFIN|ZDB-GENE-040905-4 wdr18 "WD repeat domain 18" [Danio rerio (taxid:7955)]

 Score = 229 (85.7 bits), Expect = 8.8e-17, P = 8.8e-17
 Identities = 73/323 (22%), Positives = 139/323 (43%)

Query:     9 EVILTSSPEGPI---TAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGS 65
             EV+L++   G +     Y+P +G+    + G  +  R LT     +I  + +    G   
Sbjct:     6 EVVLSADSAGQLFNCAVYDPHTGSEFLSYRGGNTSSRSLTILNGEYILGAQL----GKNY 61

Query:    66 VHLYNLWSSTPLHN-IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH 124
             ++++ +     L   I  P  V  L  + DG Y+  G ++  +Y   V  G++L   S H
Sbjct:    62 INVWEIQRKDQLQQKIVCPGIVTCLCASPDGLYVLAG-IAEAIYLWEVSTGNLLAILSRH 120

Query:   125 DKPVSCLKXXXXXXXXXXXXXXXVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTA 184
              + +SC+K                +A +     V +    + P+   +     H+  +T 
Sbjct:   121 FQDLSCIKFTDDSSHFVSGGKDN-LAFIWNLSSVVQLDSSRTPEPRHILS--RHSLPITD 177

Query:   185 ITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDG 244
             I C +    + + + S+D T K W + +G  L +V F   IM +  DP E   F  GSDG
Sbjct:   178 IHCGLMGPQARVATASLDQTVKVWEISSGEMLLSVLFDVGIMSVTFDPCEYFLFCGGSDG 237

Query:   245 LIYKGLL--KYQSRQQMHKGQ-ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301
              I++  L     SR +  +   E   +   H  +V  + +  +G  L+S + D +V +W+
Sbjct:   238 NIFQVSLCSTSLSRDKTFQSDSEGNQVFKGHRNLVTCLSVSMDGTVLLSGSNDETVRMWD 297

Query:   302 IEKRQVVMVLKNELAGSISEMVI 324
             ++ +Q +  + +   G ++   I
Sbjct:   298 VQSKQCIWTINHR--GPVTNAAI 318

GO:0070121 "Kupffer's vesicle development" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IGI;IMP

GO:0007275 "multicellular organismal development" evidence=IEA

RGD|1310646 Wdr18 "WD repeat domain 18" [Rattus norvegicus (taxid:10116)]

 Score = 225 (84.3 bits), Expect = 2.7e-16, P = 2.7e-16
 Identities = 78/327 (23%), Positives = 138/327 (42%)

Query:     6 PCNEVILTSS--PEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS 63
             P   V+ T S  P      +   SGA L  + G ++  RGL      ++ A+      G 
Sbjct:     4 PMEVVVCTDSAAPLWSCMVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQ----QGK 59

Query:    64 GSVHLYNLWSSTPLHN-IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS 122
               +  + L     L   I  P PV  L T  +G Y+  G ++ ++Y   V  G++L   S
Sbjct:    60 NYICAWELQRKDQLQQKIMCPGPVTCLTTAPNGLYVLAG-IAESIYLWEVSTGNLLVILS 118

Query:   123 AHDKPVSCLKXXXXXXXXXXXXXXXVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHND 180
              H + VSCLK               ++    +  ++       +P  ++  + V   H  
Sbjct:   119 RHYQDVSCLKFTGDGSHFVSAGKDCLVLAWSLCSVLQA-----DPSRILAPRHVWSQHTL 173

Query:   181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA 240
              +T + C  G   + + + S+D T K W + +G  L +V F   I  + +D  E   F  
Sbjct:   174 PITDLHCGFGGPMARVATASLDQTMKLWAISSGDLLLSVLFDMGITSVTMDLAEHYIFCG 233

Query:   241 GSDGLIYKGLL--KYQSRQQMHKGQELV-TLANRHDGVVVSVMMMNEGKNLVSAAEDGSV 297
             GSDG I++  L  +   R+Q  + ++    +   H   V  + +  +G  L+S + D SV
Sbjct:   234 GSDGSIFQVDLCSRPGPREQSFQPEQNTGKVFKGHRNQVTCLSVSTDGSILLSGSHDESV 293

Query:   298 YIWEIEKRQVVMVLKNELAGSISEMVI 324
              +W+++ +Q V  +   L G ++   I
Sbjct:   294 RLWDVKSKQCVRTVP--LKGPVTNAAI 318

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|Q3SZD4 WDR18 "WD repeat-containing protein 18" [Bos taurus (taxid:9913)]

 Score = 225 (84.3 bits), Expect = 2.7e-16, P = 2.7e-16
 Identities = 72/302 (23%), Positives = 129/302 (42%)

Query:    27 SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-IPVPEP 85
             SGA L  + G ++  RGL      ++ A+ +    G   +  + L     L   I  P P
Sbjct:    27 SGANLLTYRGGQAGPRGLALLNGEYLLAAQL----GKNYICAWELQRKDQLQQKIMCPGP 82

Query:    86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKXXXXXXXXXXXXX 145
             V  L T+ +G Y+  G +S N+Y   V  G++L   S H + VSCL+             
Sbjct:    83 VTCLTTSPNGLYVLAG-ISENIYLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFISGGK 141

Query:   146 XXVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC 205
               ++    +  ++     D +        +  H   +T + C  G   + + + S+D T 
Sbjct:   142 DCLVLAWSLCSVLQA---DPSRTPAPRHVWSRHTLPITDLHCGFGGPLARVATASLDQTV 198

Query:   206 KFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYK-GLLKY--QSRQQMHKG 262
             K W + +G  L +V F   I+ + +D  E   F  GSDG I++  L  +  Q  +     
Sbjct:   199 KLWEVSSGELLLSVLFDVGILAVTMDLAEHYMFCGGSDGSIFQVDLCTWPGQREKSFQPE 258

Query:   263 QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEM 322
             QE   +   H   V  + +  +G  L+S + D +V +W+++ +Q +  +   L G ++  
Sbjct:   259 QEHGKVFRGHRNQVTCLSVSTDGSVLLSGSHDETVRLWDVQSQQCLRTVT--LKGPVTNA 316

Query:   323 VI 324
              I
Sbjct:   317 CI 318

GO:0005737 "cytoplasm" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|Q9BV38 WDR18 "WD repeat-containing protein 18" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 8.0e-16, P = 8.0e-16
 Identities = 73/327 (22%), Positives = 140/327 (42%)

Query:     6 PCNEVILTSS--PEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS 63
             P    + T S  P      +   SGA L  + G ++  RGL      ++ A+ +    G 
Sbjct:     4 PMEVAVCTDSAAPMWSCIVWELHSGANLLTYRGGQAGPRGLALLNGEYLLAAQL----GK 59

Query:    64 GSVHLYNLWSSTPLHN-IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS 122
               +  + L     L   I  P PV  L  + +G Y+  G ++ +++   V  G++L   S
Sbjct:    60 NYISAWELQRKDQLQQKIMCPGPVTCLTASPNGLYVLAG-VAESIHLWEVSTGNLLVILS 118

Query:   123 AHDKPVSCLKXXXXXXXXXXXXXXXVIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHND- 180
              H + VSCL+               ++    +  ++       +P  +   + V +H+  
Sbjct:   119 RHYQDVSCLQFTGDSSHFISGGKDCLVLVWSLCSVLQA-----DPSRIPAPRHVWSHHAL 173

Query:   181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA 240
              +T + C  G   + + + S+D T K W + +G  L +V F  +IM + +D  E   F  
Sbjct:   174 PITDLHCGFGGPLARVATSSLDQTVKLWEVSSGELLLSVLFDVSIMAVTMDLAEHHMFCG 233

Query:   241 GSDGLIYK-GLLKY--QSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSV 297
             GS+G I++  L  +  Q  +  H  Q+   +   H   V  + +  +G  L+S + D +V
Sbjct:   234 GSEGSIFQVDLFTWPGQRERSFHPEQDAGKVFKGHRNQVTCLSVSTDGSVLLSGSHDETV 293

Query:   298 YIWEIEKRQVVMVLKNELAGSISEMVI 324
              +W+++ +Q +  +   L G ++   I
Sbjct:   294 RLWDVQSKQCIRTVA--LKGPVTNAAI 318

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:2158400 Wdr18 "WD repeat domain 18" [Mus musculus (taxid:10090)]

 Score = 213 (80.0 bits), Expect = 7.0e-15, P = 7.0e-15
 Identities = 72/308 (23%), Positives = 131/308 (42%)

Query:    27 SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-IPVPEP 85
             SGA L  + G ++  RGL      ++ A+      G   +  + L     L   I  P P
Sbjct:    27 SGANLLTYRGGQAGPRGLALLNGEYLLAAQ----QGKNYICAWELQRKDQLQQKIMCPGP 82

Query:    86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKXXXXXXXXXXXXX 145
             V  L T  +G Y+  G ++ ++Y   V  G++L   S H + VSCLK             
Sbjct:    83 VTCLTTAPNGLYVLAG-IAESIYLWEVCTGNLLVILSRHYQDVSCLKFTGDGSHFVSAGK 141

Query:   146 XXVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSVTAITCCIGSFNSIIISCSMDC 203
               +     +  ++       +P  ++  + V   H   +T + C  G   + + + S+D 
Sbjct:   142 DCLALAWSLCSVLQA-----DPSRILAPRHVWSQHTLPITDLHCGFGGPMARVATASLDQ 196

Query:   204 TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYK-------GLLKYQSR 256
             T K W + +G  L +V F   I  + +D  E   F  GSDG I++       GL ++  +
Sbjct:   197 TVKLWAISSGDLLLSVLFDMGITSVTMDLAEHHIFCGGSDGSIFQVDLCSWPGLREHSFQ 256

Query:   257 QQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA 316
              + + G+    +   H   V  + +  +G  L+S + D SV +W+++ +Q +  +   L 
Sbjct:   257 PEQNTGK----VFKGHRNQVTCLSVSTDGSVLLSGSHDESVRLWDVKSKQCLRTVT--LK 310

Query:   317 GSISEMVI 324
             G ++   I
Sbjct:   311 GPVTNAAI 318

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC13G7.08c crb3 "WD repeat protein Crb3" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 161 (61.7 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
 Identities = 52/232 (22%), Positives = 100/232 (43%)

Query:    20 ITAYNPSSGAILAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSSTPLH 78
             +  +N  +G +++ F  S SP +  T       ++A H  P      ++++N        
Sbjct:    18 VLCHNLHTGTLVSTFRQS-SPAKNATCTTLNHLLSAQHTRP-----QLNIHNFGKEILDQ 71

Query:    79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKXXXXXX 138
             +I +PE +  + ++  GS+L  G   GN+Y  S+  G ++  F AH +P++ LK      
Sbjct:    72 SIILPEILICVQSSPCGSWLAAGTEKGNLYIWSLKSGALIYFFRAHYQPLTILKFSNDGM 131

Query:   139 XXXXXXXXXVIATVPIFQLVDEHT--DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS-I 195
                       +    I  LVD+++  +  N     +  F  H  S+ ++    G   S  
Sbjct:   132 VLFTASNDGDVFAWLISTLVDQNSTFETSNSSVKAISHFSGHKRSIVSMEIGPGPIVSGR 191

Query:   196 IISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY 247
             + + S D T + W +  G  L+T+  P     + +DP+E   +     G+I+
Sbjct:   192 LYTASEDNTIRIWDVSTGNLLTTIALPSTPSCMTVDPSERVVYVGNEKGIIW 243

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005720 "nuclear heterochromatin" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISO

GO:0030702 "chromatin silencing at centromere" evidence=IMP

GO:0032153 "cell division site" evidence=IDA

GO:0044732 "mitotic spindle pole body" evidence=IDA

GO:0097344 "Rix1 complex" evidence=IDA

ASPGD|ASPL0000074691 AN4771 [Emericella nidulans (taxid:162425)]

 Score = 171 (65.3 bits), Expect = 8.0e-10, P = 8.0e-10
 Identities = 68/280 (24%), Positives = 116/280 (41%)

Query:    52 IAASHI-SPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTA--DGSYLFTGGLSGNVY 108
             ++ASH+ +      +VH+Y+         +P PE +  +A     +G  +  G   G + 
Sbjct:    54 VSASHVFAAQAEKATVHVYSREKGNQEATVPFPERIRSIAVAGSKNGDIVVLGTEGGRLI 113

Query:   109 AISVPKGDILRSFSAHDKPVSCLKXXXXXXXXXXXXXXXVIATVPIFQLVD--EHTD--- 163
                V  G  + + ++H +PV+ +                  A+V ++ LVD    T    
Sbjct:   114 LWEVCTGRQVATTASHLRPVTSVVVDPSSNFILSGSSD---ASVHVWSLVDLLSFTKPPS 170

Query:   164 --DKNPDDLMLQKFVAHNDSVTAITC--CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV 219
               ++ P +  ++ F  H  +V+AI      G +N I IS + D T   W    G  L   
Sbjct:   171 GRNQQPPNSPIRTFSNHRAAVSAIVVGHSTGRYN-IAISAAQDNTAIVWDYRTGHVLRNF 229

Query:   220 TFPCAIMGLALDPTETDFFAAGSDGLIYK-GLLKYQSRQQ-MHKG--QELVTLANRHD-- 273
               P + + LALDP +  F+A   DG +      K QS Q  +H    Q     A+  D  
Sbjct:   230 LLPASAISLALDPVDRAFYAGYEDGSVQSLDFYKEQSIQHPLHNPSLQATPAQASSEDRW 289

Query:   274 -------GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306
                    G   ++ +  +G  L+S  E+G VY W + +R+
Sbjct:   290 LPPSADSGAAHALTLSYDGMTLLSGHENGKVYSWNVGRRK 329

GO:0000027 "ribosomal large subunit assembly" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030702 "chromatin silencing at centromere" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0044732 "mitotic spindle pole body" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0097344 "Rix1 complex" evidence=IEA

GO:0032153 "cell division site" evidence=IEA

GO:0005720 "nuclear heterochromatin" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G5EGX7 MGCH7_ch7g852 "WD repeat-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 128 (50.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 56/257 (21%), Positives = 104/257 (40%)

Query:     8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS---- 63
             +E  ++S   GP+++ N S    +  +  + SP   +  A K   AA +     GS    
Sbjct:     3 SEEFVSSLCGGPLSS-NTSIAKDVGIYVHTLSPAYSVKSAFKKNSAAPNCVAVNGSHIFA 61

Query:    64 -----GSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL 118
                   ++H+Y+         +P PE +  +A   D   L  G   G +       G ++
Sbjct:    62 AQHEKAALHVYSRIRGNQEAYVPFPERIRCVALAGD--VLILGTAEGRIMLWEFCTGRLV 119

Query:   119 RSFSAHDKPVSCLKXXXXXXXXXXXXXXXVIATVPIFQLVD-EHTDDKNPDDLMLQKFVA 177
              + + H +PV+CL                 + ++   QL++ +   ++ P+  +      
Sbjct:   120 STPACHVQPVTCLAVTPHSVLSGSDDSNVHVWSLA--QLLELDIVAEQAPERTLSN---- 173

Query:   178 HNDSVTAITCCIGSF-------NSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLAL 230
             H  ++TA+    G+        +++ +S S D TC  W    G  L T+ FP + + L+L
Sbjct:   174 HRAAITALAASSGADGGSGATDSTLCVSASKDKTCVVWNYRTGLPLRTLLFPASPLCLSL 233

Query:   231 DPTETDFFAAGSDGLIY 247
             DP       A  DG +Y
Sbjct:   234 DPCTRALTLAADDGSVY 250

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: OsI_31763 Putative uncharacterized protein (445 aa) (Oryza sativa Indica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	387
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-28
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-07
smart00320	40	smart00320, WD40, WD40 repeats	6e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001
smart00320	40	smart00320, WD40, WD40 repeats	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  111 bits (279), Expect = 4e-28
 Identities = 66/256 (25%), Positives = 108/256 (42%), Gaps = 27/256 (10%)

Query: 61  TGS--GSVHLYNLWSSTPLHNIPVPE-PVAPLATTADGSYLFTGGLSGNVYAISVPKGDI 117
           TGS  G++ +++L +   L  +     PV  +A +ADG+YL +G     +    +  G+ 
Sbjct: 26  TGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGEC 85

Query: 118 LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA 177
           +R+ + H   VS +  SPDG +L S   D  I    ++ +              L     
Sbjct: 86  VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIK---VWDV---------ETGKCLTTLRG 133

Query: 178 HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-CAIMGLALDPTETD 236
           H D V +         + + S S D T K W L  G  ++T+T     +  +A  P    
Sbjct: 134 HTDWVNS--VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK 191

Query: 237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS 296
             ++ SDG I    L          G+ L TL   H+  V SV    +G  L S +EDG+
Sbjct: 192 LLSSSSDGTIKLWDLS--------TGKCLGTL-RGHENGVNSVAFSPDGYLLASGSEDGT 242

Query: 297 VYIWEIEKRQVVMVLK 312
           + +W++   + V  L 
Sbjct: 243 IRVWDLRTGECVQTLS 258

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 93.2 bits (232), Expect = 2e-21
 Identities = 64/303 (21%), Positives = 116/303 (38%), Gaps = 31/303 (10%)

Query: 2   LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSG-SRSPRRGLTFAGKPFIAASHISPT 60
           +   P  +++ T S +G I  ++  +G +L    G +   R     A   ++A+      
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS---- 70

Query: 61  TGSGSVHLYNLWSSTPLHNI-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR 119
               ++ L++L +   +  +      V+ +A + DG  L +      +    V  G  L 
Sbjct: 71  -SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT 129

Query: 120 SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN 179
           +   H   V+ +  SPDG+ + S   DG   T+ ++ L              +     H 
Sbjct: 130 TLRGHTDWVNSVAFSPDGTFVASSSQDG---TIKLWDLRTGKC---------VATLTGHT 177

Query: 180 DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFF 238
             V ++          ++S S D T K W L  G  L T+      +  +A  P      
Sbjct: 178 GEVNSVAFSPDGEK--LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLA 235

Query: 239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVY 298
           +   DG I      +  R     G+ + TL+  H   V S+    +GK L S + DG++ 
Sbjct: 236 SGSEDGTIRV----WDLR----TGECVQTLSG-HTNSVTSLAWSPDGKRLASGSADGTIR 286

Query: 299 IWE 301
           IW+
Sbjct: 287 IWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 88.5 bits (220), Expect = 6e-20
 Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 28/226 (12%)

Query: 89  LATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGV 148
           +A + DG  L TG   G +    +  G++LR+   H  PV  +  S DG+ L SG  D  
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT 74

Query: 149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFW 208
           I      +L D  T +       ++    H   V++          I+ S S D T K W
Sbjct: 75  I------RLWDLETGE------CVRTLTGHTSYVSS--VAFSPDGRILSSSSRDKTIKVW 120

Query: 209 RLLNGTHLSTVTF-PCAIMGLALDPTETDFFAAGSDGLIYKGL--LKYQSRQQMHKGQEL 265
            +  G  L+T+      +  +A  P  T   ++  DG I   L  L+         G   
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK--LWDLRTGKCVATLTG--- 175

Query: 266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVL 311
                 H G V SV    +G+ L+S++ DG++ +W++   + +  L
Sbjct: 176 ------HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 80.9 bits (198), Expect = 1e-16
 Identities = 77/339 (22%), Positives = 138/339 (40%), Gaps = 34/339 (10%)

Query: 2   LHHLPCNEVILTSSPEGPITAYNPSSG-AILAHFSGSRSPRRGLTFAGKPFIAASHISPT 60
           +   P  E++L+ S +G I  ++  +G  ++    G             P   +  ++ +
Sbjct: 71  IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS 130

Query: 61  TGSGSVHLYNL-WSSTPLHNIPV-PEPVAPLATTADGSYLFTGG-LSGNVYAISVPKGDI 117
           +  G+V L++L      +  +    E V  LA + DG  L +G  L G +    +  G  
Sbjct: 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP 190

Query: 118 LRSFSAHDKPVSCLKISPDGSLLI-SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV 176
           L + + H  PVS L  SPDG LLI SG  DG I              D +   L+     
Sbjct: 191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI-----------RLWDLSTGKLLRSTLS 239

Query: 177 AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC--AIMGLALDPTE 234
            H+DSV +         S++ S S D T + W L + + L         +++ +A  P  
Sbjct: 240 GHSDSVVSSFS---PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG 296

Query: 235 TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA-AE 293
               +  SDG +    L+          +        H+G V S+    +G  LVS  ++
Sbjct: 297 KLLASGSSDGTVRLWDLETGKLLSSLTLKG-------HEGPVSSLSFSPDGSLLVSGGSD 349

Query: 294 DGSVYIWEIEKRQVVMVLK-----NELAGSISEMVIATG 327
           DG++ +W++   + +  L+       ++ S    V+++G
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSG 388

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.7 bits (195), Expect = 3e-16
 Identities = 60/312 (19%), Positives = 120/312 (38%), Gaps = 26/312 (8%)

Query: 6   PCNEVILTSSPEGPITA-YNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSG 64
           P  +++ + S        ++  +G  L+  +G   P   L F+    +  +  S     G
Sbjct: 165 PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS---SDG 221

Query: 65  SVHLYNLWSSTPLHN-IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP-KGDILRSFS 122
           ++ L++L +   L + +         + + DGS L +G   G +    +     +LR+ S
Sbjct: 222 TIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281

Query: 123 AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV 182
            H   V  +  SPDG LL SG  DG +             D +    L       H   V
Sbjct: 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLW----------DLETGKLLSSLTLKGHEGPV 331

Query: 183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS 242
           ++++      + ++   S D T + W L  G  L T+     ++ ++  P      +  +
Sbjct: 332 SSLSFS-PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGST 390

Query: 243 DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI 302
           DG +   L    +         L+   + H   V S+    +GK+L S + D ++ +W++
Sbjct: 391 DGTVR--LWDLST-------GSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441

Query: 303 EKRQVVMVLKNE 314
           +     +    +
Sbjct: 442 KTSLKSVSFSPD 453

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.3 bits (183), Expect = 5e-15
 Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 28/198 (14%)

Query: 118 LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA 177
            R+   H   V+C+  SPDG LL +G  DG I      ++ D  T +       L+    
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTI------KVWDLETGEL------LRTLKG 49

Query: 178 HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETD 236
           H   V  +     +  + + S S D T + W L  G  + T+T     +  +A  P    
Sbjct: 50  HTGPVRDVAAS--ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107

Query: 237 FFAAGSDG--LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED 294
             ++  D    ++           +  G+ L TL   H   V SV    +G  + S+++D
Sbjct: 108 LSSSSRDKTIKVW----------DVETGKCLTTLRG-HTDWVNSVAFSPDGTFVASSSQD 156

Query: 295 GSVYIWEIEKRQVVMVLK 312
           G++ +W++   + V  L 
Sbjct: 157 GTIKLWDLRTGKCVATLT 174

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.4 bits (137), Expect = 5e-09
 Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 20/191 (10%)

Query: 121 FSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND 180
              H+  ++ +  SPDG LL+SG  DG I          +  D  N + L+      H+ 
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTI----------KLWDLDNGEKLIKSLEGLHDS 110

Query: 181 SVTAITCCIGSFNSIIISCS-MDCTCKFWRLLNGTHLSTVTFPC--AIMGLALDPTETDF 237
           SV+ +       NSI+++ S +D T K W L     L         ++  LA  P     
Sbjct: 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170

Query: 238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSV 297
            +  S      G +K    +    G+ L TLA   D V       + G  + S + DG++
Sbjct: 171 ASGSS----LDGTIKLWDLRT---GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223

Query: 298 YIWEIEKRQVV 308
            +W++   +++
Sbjct: 224 RLWDLSTGKLL 234

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 115 GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVI 149
           G +LR+   H  PV+ +  SPDG+LL SG DDG +
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTV 35

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.4 bits (108), Expect = 6e-07
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 114 KGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVI 149
            G++L++   H  PV+ +  SPDG  L SG DDG I
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTI 36

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 7/166 (4%)

Query: 6   PCNEVILTSSPEGPITAYNPSSGAILAHFS--GSRSPRRGLTFAGKPFIAASHISPTTGS 63
           P  +++ + S +G +  ++  +G +L+  +  G   P   L+F+    +  S  S     
Sbjct: 294 PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS---DD 350

Query: 64  GSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA 123
           G++ L++L +  PL  +     V  ++ + DG  + +G   G V    +  G +LR+   
Sbjct: 351 GTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410

Query: 124 HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDD 169
           H   V+ L  SPDG  L SG  D  I    +   +   +   +PD 
Sbjct: 411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSL--KSVSFSPDG 454

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFW 208
           L+    H   VT++        +++ S S D T + W
Sbjct: 4   LRTLKGHTGPVTSVAFS--PDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFW 208
           L+    H   VT++          + S S D T K W
Sbjct: 5   LKTLKGHTGPVTSVAFS--PDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	387
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0646	476	consensus WD40 repeat protein [General function pr	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.98
PTZ00420	568	coronin; Provisional	99.98
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.98
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG2055	514	consensus WD40 repeat protein [General function pr	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.95
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.94
KOG1188	376	consensus WD40 repeat protein [General function pr	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.91
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.91
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.91
KOG0649	325	consensus WD40 repeat protein [General function pr	99.9
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.89
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.88
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.88
KOG4227	609	consensus WD40 repeat protein [General function pr	99.87
KOG1963	792	consensus WD40 repeat protein [General function pr	99.86
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.86
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.86
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.86
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.86
PRK11028	330	6-phosphogluconolactonase; Provisional	99.86
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.85
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.85
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.85
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG1963	792	consensus WD40 repeat protein [General function pr	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.83
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.82
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.82
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.81
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
KOG1188	376	consensus WD40 repeat protein [General function pr	99.81
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.81
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.81
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.81
PRK01742	429	tolB translocation protein TolB; Provisional	99.8
KOG4227	609	consensus WD40 repeat protein [General function pr	99.8
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.8
KOG1334	559	consensus WD40 repeat protein [General function pr	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.79
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.78
KOG1334	559	consensus WD40 repeat protein [General function pr	99.78
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.78
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.78
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.77
KOG2139	445	consensus WD40 repeat protein [General function pr	99.77
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.76
KOG1310	758	consensus WD40 repeat protein [General function pr	99.75
PRK04922	433	tolB translocation protein TolB; Provisional	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
KOG1310	758	consensus WD40 repeat protein [General function pr	99.74
PRK03629	429	tolB translocation protein TolB; Provisional	99.74
PRK03629	429	tolB translocation protein TolB; Provisional	99.73
KOG2139	445	consensus WD40 repeat protein [General function pr	99.73
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.71
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.71
PRK05137	435	tolB translocation protein TolB; Provisional	99.7
PRK02889	427	tolB translocation protein TolB; Provisional	99.7
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.7
KOG2321	703	consensus WD40 repeat protein [General function pr	99.7
KOG2321	703	consensus WD40 repeat protein [General function pr	99.69
PRK04922	433	tolB translocation protein TolB; Provisional	99.68
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.68
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.68
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.68
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.67
PRK05137	435	tolB translocation protein TolB; Provisional	99.67
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.67
PRK02889	427	tolB translocation protein TolB; Provisional	99.66
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.65
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.64
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.63
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.62
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.62
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.61
KOG2315	566	consensus Predicted translation initiation factor	99.6
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.59
PRK00178	430	tolB translocation protein TolB; Provisional	99.58
KOG2314	698	consensus Translation initiation factor 3, subunit	99.57
PRK04792	448	tolB translocation protein TolB; Provisional	99.57
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.56
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.56
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.56
KOG4547	541	consensus WD40 repeat-containing protein [General	99.56
KOG2315	566	consensus Predicted translation initiation factor	99.55
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.54
PRK01029	428	tolB translocation protein TolB; Provisional	99.53
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.53
PRK00178	430	tolB translocation protein TolB; Provisional	99.52
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.51
PRK01029	428	tolB translocation protein TolB; Provisional	99.51
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.5
PRK04792	448	tolB translocation protein TolB; Provisional	99.49
KOG2314	698	consensus Translation initiation factor 3, subunit	99.49
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.47
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.46
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.46
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.42
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.41
KOG4547	541	consensus WD40 repeat-containing protein [General	99.41
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.41
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.4
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.4
COG4946	668	Uncharacterized protein related to the periplasmic	99.39
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.39
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.38
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.37
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.37
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.35
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.33
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.33
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.29
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.28
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.28
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.28
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.28
KOG2695	425	consensus WD40 repeat protein [General function pr	99.26
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.26
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.24
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.24
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.24
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.24
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.23
PRK04043	419	tolB translocation protein TolB; Provisional	99.21
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.2
COG4946	668	Uncharacterized protein related to the periplasmic	99.18
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.18
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.16
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.15
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.15
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.13
PRK04043	419	tolB translocation protein TolB; Provisional	99.12
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.1
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.07
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.06
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.06
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	99.03
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.02
PRK02888	635	nitrous-oxide reductase; Validated	99.02
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	99.01
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.99
KOG2695	425	consensus WD40 repeat protein [General function pr	98.97
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.97
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.95
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.91
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.9
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.89
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.89
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.88
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.84
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.82
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.81
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.77
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.77
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.75
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.72
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.71
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.71
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.69
KOG3621	726	consensus WD40 repeat-containing protein [General	98.68
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.67
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.67
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.64
PRK02888	635	nitrous-oxide reductase; Validated	98.64
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.61
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.56
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.54
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.53
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.53
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.48
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.47
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.47
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.45
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.43
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.42
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.41
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.39
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.38
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.37
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.35
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.29
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.28
COG3391	381	Uncharacterized conserved protein [Function unknow	98.28
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.27
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.26
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.23
COG3391	381	Uncharacterized conserved protein [Function unknow	98.22
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.18
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.18
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.15
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.08
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.04
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.02
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.02
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.02
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.9
KOG3621	726	consensus WD40 repeat-containing protein [General	97.89
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.87
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.85
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.84
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.84
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.83
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.79
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.73
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.72
KOG2444	238	consensus WD40 repeat protein [General function pr	97.7
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.69
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.68
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.67
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.65
KOG2395	644	consensus Protein involved in vacuole import and d	97.64
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.58
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.57
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.5
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.49
PRK13616	591	lipoprotein LpqB; Provisional	97.48
PRK13616	591	lipoprotein LpqB; Provisional	97.44
PHA02713	557	hypothetical protein; Provisional	97.36
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.34
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.27
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.27
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.25
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.23
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	97.22
KOG2395	644	consensus Protein involved in vacuole import and d	97.19
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.17
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.13
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.96
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.95
KOG2444	238	consensus WD40 repeat protein [General function pr	96.87
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.75
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.75
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.74
PHA02713	557	hypothetical protein; Provisional	96.73
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.66
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.51
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.4
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.39
PHA03098	534	kelch-like protein; Provisional	96.35
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.3
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.29
PHA03098	534	kelch-like protein; Provisional	96.12
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.05
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.04
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.03
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.99
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.97
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.96
COG5167	776	VID27 Protein involved in vacuole import and degra	95.92
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.89
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.87
PHA02790	480	Kelch-like protein; Provisional	95.6
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.6
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.41
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.31
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.31
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.28
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.23
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.18
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.05
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.05
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.02
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.94
PHA02790	480	Kelch-like protein; Provisional	94.9
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.83
KOG2247	615	consensus WD40 repeat-containing protein [General	94.57
PRK10115	686	protease 2; Provisional	94.56
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.53
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	94.48
COG4590	733	ABC-type uncharacterized transport system, permeas	94.39
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.36
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.22
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.21
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	94.12
COG5167	776	VID27 Protein involved in vacuole import and degra	94.1
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.84
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.77
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	93.76
PRK13684	334	Ycf48-like protein; Provisional	93.71
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.45
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.43
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.35
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	93.16
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.08
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.83
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.7
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.68
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.67
PRK13684	334	Ycf48-like protein; Provisional	92.45
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.39
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	92.01
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.91
PRK05560	805	DNA gyrase subunit A; Validated	91.82
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.72
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.46
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.41
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	91.27
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	91.15
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.97
TIGR01063	800	gyrA DNA gyrase, A subunit. This model describes t	90.84
TIGR01063	800	gyrA DNA gyrase, A subunit. This model describes t	90.32
COG5276	370	Uncharacterized conserved protein [Function unknow	90.29
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.29
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.14
KOG2247	615	consensus WD40 repeat-containing protein [General	90.06
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	89.53
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.31
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.28
COG5276	370	Uncharacterized conserved protein [Function unknow	88.79
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	88.53
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	88.33
KOG2377	657	consensus Uncharacterized conserved protein [Funct	87.99
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.81
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	87.71
COG4590	733	ABC-type uncharacterized transport system, permeas	87.67
PRK05560	805	DNA gyrase subunit A; Validated	87.11
KOG3616	1636	consensus Selective LIM binding factor [Transcript	87.11
PF14727	418	PHTB1_N: PTHB1 N-terminus	86.93
PF12768	281	Rax2: Cortical protein marker for cell polarity	86.77
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	86.74
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	86.46
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	86.39
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.92
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	85.71
KOG3616	1636	consensus Selective LIM binding factor [Transcript	85.47
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	85.46
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	84.89
COG3292	671	Predicted periplasmic ligand-binding sensor domain	84.24
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	84.12
PLN00033	398	photosystem II stability/assembly factor; Provisio	83.88
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	82.99
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	82.97
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	82.93

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-51  Score=327.74  Aligned_cols=300  Identities=16%  Similarity=0.238  Sum_probs=263.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-cc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NI   80 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~   80 (387)
                      ++|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|+    +..+++|+.||+|++||..+++++. .+
T Consensus       121 ~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPD----gk~iASG~~dg~I~lwdpktg~~~g~~l  196 (480)
T KOG0271|consen  121 VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPD----GKKIASGSKDGSIRLWDPKTGQQIGRAL  196 (480)
T ss_pred             EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCC----cchhhccccCCeEEEecCCCCCcccccc
Confidence            579999999999999999999999999999999999999999999995    5566679999999999999987764 33


Q ss_pred             C-CCCCeeeEEecc-----CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621           81 P-VPEPVAPLATTA-----DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        81 ~-~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  154 (387)
                      . |...|++++|.|     ..++|++++.||.++|||+..+.++..+.+|+.+|+|+.|-.+| ++++|+.|++|++|+.
T Consensus       197 ~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a  275 (480)
T KOG0271|consen  197 RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRA  275 (480)
T ss_pred             cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEc
Confidence            3 778999999976     56799999999999999999999999999999999999997654 8999999999999998


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeC-----------C-----------------------CCceEEEEe
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIG-----------S-----------------------FNSIIISCS  200 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~-----------------------~~~~l~s~~  200 (387)
                                  ..+.....+.+|...|+.++++.+           +                       .+..|++|+
T Consensus       276 ------------~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs  343 (480)
T KOG0271|consen  276 ------------LDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS  343 (480)
T ss_pred             ------------cchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence                        677888999999999999988611           1                       123699999


Q ss_pred             CCCcEEEEeCCCCc-EEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEE
Q 035621          201 MDCTCKFWRLLNGT-HLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS  278 (387)
Q Consensus       201 ~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  278 (387)
                      .|.++.+|+....+ ++.... |..-|+.+.|+||++++++++.|..|++|+.+++         +....+.+|-+.|..
T Consensus       344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---------k~lasfRGHv~~VYq  414 (480)
T KOG0271|consen  344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---------KFLASFRGHVAAVYQ  414 (480)
T ss_pred             CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---------chhhhhhhccceeEE
Confidence            99999999976543 555554 7889999999999999999999999999999984         333445689999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621          279 VMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       279 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  328 (387)
                      ++|+.|.++|++|+.|.++++|++++.++...+.+|.+ +|.++.+++..
T Consensus       415 vawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~D-EVf~vDwspDG  463 (480)
T KOG0271|consen  415 VAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHAD-EVFAVDWSPDG  463 (480)
T ss_pred             EEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCc-eEEEEEecCCC
Confidence            99999999999999999999999999999999998855 88888776643

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-50  Score=325.27  Aligned_cols=275  Identities=18%  Similarity=0.257  Sum_probs=255.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ..||+|++.||||+.+|.++||+..+...+++|.+|...|.++.|+|..  ....+++++.||++++|++.+..++..+.
T Consensus       181 ~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvklw~~~~e~~l~~l~  258 (459)
T KOG0272|consen  181 CSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKLWKLSQETPLQDLE  258 (459)
T ss_pred             eEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCC--CccceeeeccCCceeeeccCCCcchhhhh
Confidence            4699999999999999999999999999999999999999999999942  13467789999999999999988888887


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                       |...|..++|+|+|++|++++.|.+-++||+++++.+...++|...|.+++|+|||.++++|+.|..-+|||+      
T Consensus       259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl------  332 (459)
T KOG0272|consen  259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL------  332 (459)
T ss_pred             cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec------
Confidence             6678999999999999999999999999999999998888999999999999999999999999999999999      


Q ss_pred             CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCC-CCCeEE
Q 035621          161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDP-TETDFF  238 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~  238 (387)
                            .++.++..+.+|..+|.+++|+|++  ..|+||+.|++++|||++..+++..+. |.+-|+.+.|+| .|.+|+
T Consensus       333 ------Rtgr~im~L~gH~k~I~~V~fsPNG--y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~  404 (459)
T KOG0272|consen  333 ------RTGRCIMFLAGHIKEILSVAFSPNG--YHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLV  404 (459)
T ss_pred             ------ccCcEEEEecccccceeeEeECCCc--eEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEE
Confidence                  6888999999999999999999985  999999999999999999999998888 778899999999 678999


Q ss_pred             EEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       239 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      +++.|+++++|...+         ..+...+.+|.+.|.++..++++.+++|++.|.++++|.
T Consensus       405 TasyD~t~kiWs~~~---------~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  405 TASYDNTVKIWSTRT---------WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EcccCcceeeecCCC---------cccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999999999887         344445569999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.6e-49  Score=311.78  Aligned_cols=277  Identities=18%  Similarity=0.295  Sum_probs=248.9

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCce-eEeccCCCCCceeEEEcCccce-eeeccccCCCCCeEEEEEccCCCcccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAI-LAHFSGSRSPRRGLTFAGKPFI-AASHISPTTGSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~d~~v~vw~~~~~~~~~~   79 (387)
                      ++|||||+.||+|+.||+|++||.++|+. ...+.+|...|++++|.|-... ...++++++.||.++|||+..+.++..
T Consensus       163 vawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~  242 (480)
T KOG0271|consen  163 VAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT  242 (480)
T ss_pred             EEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE
Confidence            68999999999999999999999999876 4678999999999999984332 234688899999999999999988887


Q ss_pred             cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEc-----------CCC----------
Q 035621           80 IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKIS-----------PDG----------  137 (387)
Q Consensus        80 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-----------~~~----------  137 (387)
                      +. |..+|+|+.|--+| +|++|+.|++|++|+...|.+.+.+++|...|+.++.+           |.+          
T Consensus       243 lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~  321 (480)
T KOG0271|consen  243 LSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ  321 (480)
T ss_pred             eccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence            76 77899999998765 89999999999999999999999999999999999887           222          


Q ss_pred             ---------------CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC
Q 035621          138 ---------------SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD  202 (387)
Q Consensus       138 ---------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  202 (387)
                                     ..|++|+.|.++.+|+-.           ...+++..+.+|+.-|+.+.|+|++  +++++++.|
T Consensus       322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~-----------~~kkpi~rmtgHq~lVn~V~fSPd~--r~IASaSFD  388 (480)
T KOG0271|consen  322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPF-----------KSKKPITRMTGHQALVNHVSFSPDG--RYIASASFD  388 (480)
T ss_pred             HHHHHHHHHhhccCcceeEEecCCceEEEeccc-----------ccccchhhhhchhhheeeEEECCCc--cEEEEeecc
Confidence                           359999999999999873           3556788899999999999999996  999999999


Q ss_pred             CcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE
Q 035621          203 CTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM  281 (387)
Q Consensus       203 ~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  281 (387)
                      ..|++||.++|+.+.+|. |-..|..++|+.|.++|++|+.|.++++|++++         +.+..-+.+|...|.++.|
T Consensus       389 kSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t---------kKl~~DLpGh~DEVf~vDw  459 (480)
T KOG0271|consen  389 KSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT---------KKLKQDLPGHADEVFAVDW  459 (480)
T ss_pred             cceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee---------eeecccCCCCCceEEEEEe
Confidence            999999999999999999 789999999999999999999999999999997         4445556689999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEE
Q 035621          282 MNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       282 s~~~~~l~s~~~dg~i~iwd  301 (387)
                      +|||..+++|+.|..+++|.
T Consensus       460 spDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  460 SPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cCCCceeecCCCceEEEeec
Confidence            99999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.3e-45  Score=279.30  Aligned_cols=272  Identities=17%  Similarity=0.218  Sum_probs=244.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC--C----
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--T----   75 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~----   75 (387)
                      +.|++|.++|++++.||.+.|||.-|...+..++-....|..++|+|.+.+.    +.|+-|+...||++.+.  +    
T Consensus        61 ~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~V----AcGGLdN~Csiy~ls~~d~~g~~~  136 (343)
T KOG0286|consen   61 MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFV----ACGGLDNKCSIYPLSTRDAEGNVR  136 (343)
T ss_pred             eEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeE----EecCcCceeEEEecccccccccce
Confidence            5799999999999999999999999998888888888899999999955544    45999999999999754  2    


Q ss_pred             cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 035621           76 PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVP  153 (387)
Q Consensus        76 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd  153 (387)
                      ..+.+. |.+-+.|+.|.+| ..|++++.|.+..+||+++++.+..|.+|.+.|.++.++| +++.+++|+.|+..++||
T Consensus       137 v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD  215 (343)
T KOG0286|consen  137 VSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWD  215 (343)
T ss_pred             eeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeee
Confidence            222233 6788999999986 4688999999999999999999999999999999999999 999999999999999999


Q ss_pred             CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC---CceeEEEe
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP---CAIMGLAL  230 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~  230 (387)
                      +            +...+.+.|.+|...|+++.|.|++  .-|++|+.|++.++||++..+.+..+.++   .+|++++|
T Consensus       216 ~------------R~~~c~qtF~ghesDINsv~ffP~G--~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~F  281 (343)
T KOG0286|consen  216 V------------RSGQCVQTFEGHESDINSVRFFPSG--DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAF  281 (343)
T ss_pred             c------------cCcceeEeecccccccceEEEccCC--CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEE
Confidence            9            5778999999999999999999996  89999999999999999999999998854   58999999


Q ss_pred             CCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      +..|++|++|..|..+.+||.-.+         +....+.+|.+.|+++..+|||..++||+.|.+++||.
T Consensus       282 S~SGRlLfagy~d~~c~vWDtlk~---------e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  282 SKSGRLLFAGYDDFTCNVWDTLKG---------ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cccccEEEeeecCCceeEeecccc---------ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999999999999998763         33344569999999999999999999999999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.2e-44  Score=267.82  Aligned_cols=282  Identities=19%  Similarity=0.302  Sum_probs=241.7

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc--ccccC-CCCC
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP--LHNIP-VPEP   85 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~--~~~~~-~~~~   85 (387)
                      -+|++++.|-+|++|...+|.+.++++...+.|+.+...|++..++     +.....|++||++++++  +..+. |...
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LA-----aa~~qhvRlyD~~S~np~Pv~t~e~h~kN   85 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLA-----AAGNQHVRLYDLNSNNPNPVATFEGHTKN   85 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhh-----hccCCeeEEEEccCCCCCceeEEeccCCc
Confidence            5899999999999999999999999997788899999999766554     45678899999988754  66666 5588


Q ss_pred             eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621           86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDK  165 (387)
Q Consensus        86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  165 (387)
                      |..+.|..+|+++++|+.||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+..         
T Consensus        86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~---------  155 (311)
T KOG0315|consen   86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE---------  155 (311)
T ss_pred             eEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccC---------
Confidence            9999999999999999999999999999977766665 779999999999999999999999999999943         


Q ss_pred             CCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc------EEEEEe-cCCceeEEEeCCCCCeE
Q 035621          166 NPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT------HLSTVT-FPCAIMGLALDPTETDF  237 (387)
Q Consensus       166 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l  237 (387)
                         ..+...+ +....+|.++.+.|++  .+++.+...|..++|++-+.+      ++..++ |...+..+.+|||+++|
T Consensus       156 ---~~c~~~liPe~~~~i~sl~v~~dg--sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l  230 (311)
T KOG0315|consen  156 ---NSCTHELIPEDDTSIQSLTVMPDG--SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL  230 (311)
T ss_pred             ---CccccccCCCCCcceeeEEEcCCC--cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence               2222222 2334688999999885  999999999999999997654      344454 67889999999999999


Q ss_pred             EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCC
Q 035621          238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAG  317 (387)
Q Consensus       238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  317 (387)
                      ++++.|..++||+....        ......+.+|...++.++||.||+||+||+.|+.+++|++..++.++...+|+..
T Consensus       231 at~ssdktv~iwn~~~~--------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~  302 (311)
T KOG0315|consen  231 ATCSSDKTVKIWNTDDF--------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA  302 (311)
T ss_pred             EeecCCceEEEEecCCc--------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence            99999999999999872        2333445689999999999999999999999999999999999999999999874


Q ss_pred             C
Q 035621          318 S  318 (387)
Q Consensus       318 ~  318 (387)
                      .
T Consensus       303 ~  303 (311)
T KOG0315|consen  303 A  303 (311)
T ss_pred             c
Confidence            3

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-42  Score=265.68  Aligned_cols=276  Identities=16%  Similarity=0.252  Sum_probs=235.1

Q ss_pred             CcEEEeeCCCCcEEEEeCC-----CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621            8 NEVILTSSPEGPITAYNPS-----SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-   81 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-   81 (387)
                      .+.+++++.|.++.+|++.     .|..++.+.+|...|..++.++++.+..+    ++.|+++++||+.+++..+.+. 
T Consensus        28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS----~swD~~lrlWDl~~g~~t~~f~G  103 (315)
T KOG0279|consen   28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS----ASWDGTLRLWDLATGESTRRFVG  103 (315)
T ss_pred             CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe----ccccceEEEEEecCCcEEEEEEe
Confidence            5689999999999999875     46778999999999999999997665554    9999999999999998877776 


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCC--CCCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCcc
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH--DKPVSCLKISPD--GSLLISGGDDGVIATVPIFQL  157 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~  157 (387)
                      |...|.+++|++|.+.+++|+.|.+|.+||... .+..++..+  .+.|+|+.|+|+  ..++++++.|+++++||+   
T Consensus       104 H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl---  179 (315)
T KOG0279|consen  104 HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNL---  179 (315)
T ss_pred             cCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEcc---
Confidence            778899999999999999999999999999854 444455433  789999999997  679999999999999999   


Q ss_pred             cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeE
Q 035621          158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDF  237 (387)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l  237 (387)
                               ...+....+.+|++.++.++++|++  .+.++|+.||.+.+||++.++.+..+.+...|.+++|+|+.-.|
T Consensus       180 ---------~~~~l~~~~~gh~~~v~t~~vSpDG--slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL  248 (315)
T KOG0279|consen  180 ---------RNCQLRTTFIGHSGYVNTVTVSPDG--SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWL  248 (315)
T ss_pred             ---------CCcchhhccccccccEEEEEECCCC--CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeE
Confidence                     5667778899999999999999995  99999999999999999999999999999999999999997666


Q ss_pred             EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      +.+.. ..|+|||+.+.......+................+++|++||..|++|..|+.|++|.+.
T Consensus       249 ~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  249 CAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             eeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            66654 459999999876554443332222222334456788999999999999999999999875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-44  Score=290.65  Aligned_cols=266  Identities=19%  Similarity=0.233  Sum_probs=240.4

Q ss_pred             cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccC--CCEEEEecCCCcEEEEe
Q 035621           35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTAD--GSYLFTGGLSGNVYAIS  111 (387)
Q Consensus        35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d  111 (387)
                      .+...||..+.|+.+.    ..++||+-+|.+++|+..+...+..+. |...+.++.|+|.  +..+++++.||++++|+
T Consensus       172 ~gd~rPis~~~fS~ds----~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~  247 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDS----KHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK  247 (459)
T ss_pred             ccCCCcceeeEeecCC----CeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence            3567789999999954    455569999999999999998888777 7789999999996  66899999999999999


Q ss_pred             CCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC
Q 035621          112 VPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS  191 (387)
Q Consensus       112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  191 (387)
                      +.+..++..+.+|...|..++|+|+|++|++++.|.+-++||+            .+...+....+|..+|.+++|.+++
T Consensus       248 ~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~------------~tk~ElL~QEGHs~~v~~iaf~~DG  315 (459)
T KOG0272|consen  248 LSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDL------------ETKSELLLQEGHSKGVFSIAFQPDG  315 (459)
T ss_pred             cCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccc------------ccchhhHhhcccccccceeEecCCC
Confidence            9999999999999999999999999999999999999999999            6677777889999999999999985


Q ss_pred             CCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecc
Q 035621          192 FNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLAN  270 (387)
Q Consensus       192 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  270 (387)
                        .+++||+.|..-+|||++++.++..+. |-.+|.+++|+|+|..|++|+.|++++|||++.-         .......
T Consensus       316 --SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---------~~ly~ip  384 (459)
T KOG0272|consen  316 --SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---------SELYTIP  384 (459)
T ss_pred             --ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---------ccceecc
Confidence              999999999999999999999999888 7789999999999999999999999999999972         2244556


Q ss_pred             cccccEEEEEEec-CCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621          271 RHDGVVVSVMMMN-EGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       271 ~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  328 (387)
                      +|.+-|+.++|+| .|.+|+|++.|++++||...++.+++.+.+|.. .|-++.+++.+
T Consensus       385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~-kV~s~Dis~d~  442 (459)
T KOG0272|consen  385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG-KVISLDISPDS  442 (459)
T ss_pred             cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc-ceEEEEeccCC
Confidence            8999999999998 788999999999999999999999999999854 88777776544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5e-44  Score=287.03  Aligned_cols=277  Identities=19%  Similarity=0.256  Sum_probs=246.4

Q ss_pred             CccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            1 LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++.|.|+|+.|++|+..|.+.+|+..+......++.|..+|+++.|++++.    ++++|+.+|.|++|+..-.......
T Consensus       101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~----wmiSgD~gG~iKyWqpnmnnVk~~~  176 (464)
T KOG0284|consen  101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGT----WMISGDKGGMIKYWQPNMNNVKIIQ  176 (464)
T ss_pred             eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCC----EEEEcCCCceEEecccchhhhHHhh
Confidence            478999999999999999999999866665566789999999999999554    4555999999999998655544444


Q ss_pred             CCC-CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccc
Q 035621           81 PVP-EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVD  159 (387)
Q Consensus        81 ~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  159 (387)
                      .+. +.|++++|+|+...+++++.||+|+|||....+....+.+|.-.|.+++|+|...++++++.|..|++||.     
T Consensus       177 ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDp-----  251 (464)
T KOG0284|consen  177 AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP-----  251 (464)
T ss_pred             HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecC-----
Confidence            454 89999999999999999999999999999998888889999999999999999999999999999999999     


Q ss_pred             cCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCC-CeE
Q 035621          160 EHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTE-TDF  237 (387)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l  237 (387)
                             .++.++.++..|...|..+.|.+++  ++|+++|.|..++++|+++.+.+..++ |...++++.|+|-. .++
T Consensus       252 -------rSg~cl~tlh~HKntVl~~~f~~n~--N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lf  322 (464)
T KOG0284|consen  252 -------RSGSCLATLHGHKNTVLAVKFNPNG--NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLF  322 (464)
T ss_pred             -------CCcchhhhhhhccceEEEEEEcCCC--CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccce
Confidence                   6888999999999999999999986  999999999999999999988888888 88999999999965 567


Q ss_pred             EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      .+|+.||.|..|.+..        ..++.....+|...|++++|+|-|..|++|+.|.++++|.-.
T Consensus       323 tsgg~Dgsvvh~~v~~--------~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  323 TSGGSDGSVVHWVVGL--------EEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eeccCCCceEEEeccc--------cccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            7788999999999884        234444556899999999999999999999999999999743

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-41  Score=260.66  Aligned_cols=263  Identities=21%  Similarity=0.281  Sum_probs=224.9

Q ss_pred             ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-----CCcccccC-CCCCeeeEEeccCCCEEEEec
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-----STPLHNIP-VPEPVAPLATTADGSYLFTGG  102 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  102 (387)
                      ....++++|++.|+.++..+.   ....+.+++.|..+.+|++..     |.+++.+. |...|..+..++||++.++++
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~---~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s   82 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIK---NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS   82 (315)
T ss_pred             eeeeeecCCCceEEEEEeecC---CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc
Confidence            456678999999999999874   233455689999999999854     44555555 677899999999999999999


Q ss_pred             CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc--CC
Q 035621          103 LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH--ND  180 (387)
Q Consensus       103 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~  180 (387)
                      .|+.+++||+.+++..+.|.+|...|.+++|+||.+.+++|+.|.+|++|++             .+.+..+...+  .+
T Consensus        83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt-------------~g~ck~t~~~~~~~~  149 (315)
T KOG0279|consen   83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT-------------LGVCKYTIHEDSHRE  149 (315)
T ss_pred             ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee-------------cccEEEEEecCCCcC
Confidence            9999999999999999999999999999999999999999999999999998             33444444443  78


Q ss_pred             CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc
Q 035621          181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM  259 (387)
Q Consensus       181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  259 (387)
                      .|.++.|+|+....+|++++.|+++++||+++.+....+. |...++.++++|||..+++|+.||.+.+||++..     
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~-----  224 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG-----  224 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-----
Confidence            8999999999777999999999999999999999888876 7789999999999999999999999999999973     


Q ss_pred             cccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCC
Q 035621          260 HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGS  318 (387)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  318 (387)
                         ..+..+  .|...|.+++|+|+.-.|+.+ .+..|+|||+++++++..++....++
T Consensus       225 ---k~lysl--~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~  277 (315)
T KOG0279|consen  225 ---KNLYSL--EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP  277 (315)
T ss_pred             ---ceeEec--cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc
Confidence               333333  688999999999986666555 55569999999999999888665544

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.4e-41  Score=257.27  Aligned_cols=271  Identities=18%  Similarity=0.281  Sum_probs=239.1

Q ss_pred             eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-CCeeeEEeccCCCEEEEecCCCcEEE
Q 035621           31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-EPVAPLATTADGSYLFTGGLSGNVYA  109 (387)
Q Consensus        31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i  109 (387)
                      .+++++|...|.++.|+++..    ++++++.||.+.|||.-+....+.++.+ ..|..++|+|.|+++|+|+.|+...|
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr----~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi  123 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSR----RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI  123 (343)
T ss_pred             EEEecccccceeeeEecCCcC----eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence            478999999999999999544    4555999999999999999888888866 57999999999999999999999999


Q ss_pred             EeCCCC------ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeE
Q 035621          110 ISVPKG------DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVT  183 (387)
Q Consensus       110 ~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  183 (387)
                      |++.+.      +..+.+.+|.+.+.|+.|-+| ..|++++.|.+..+||+            +++..+..+.+|.+.|.
T Consensus       124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDi------------e~g~~~~~f~GH~gDV~  190 (343)
T KOG0286|consen  124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDI------------ETGQQTQVFHGHTGDVM  190 (343)
T ss_pred             EecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEc------------ccceEEEEecCCcccEE
Confidence            999755      345678899999999999975 57999999999999999            78889999999999999


Q ss_pred             EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccc
Q 035621          184 AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG  262 (387)
Q Consensus       184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  262 (387)
                      ++.++|. +++.+++|+-|++.++||++.+.+.++|. |...|+++.|.|+|.-+++|+.|+..++||++.......+. 
T Consensus       191 slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-  268 (343)
T KOG0286|consen  191 SLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-  268 (343)
T ss_pred             EEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-
Confidence            9999995 36999999999999999999999999998 78999999999999999999999999999999843222111 


Q ss_pred             ceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          263 QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       263 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                            ...-..+|++++||..|++|++|..|.++.+||.-.++.+..+.+|.+ .|+++.+++.
T Consensus       269 ------~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN-RvScl~~s~D  326 (343)
T KOG0286|consen  269 ------HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN-RVSCLGVSPD  326 (343)
T ss_pred             ------cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC-eeEEEEECCC
Confidence                  112345799999999999999999999999999999999999999855 9998877653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.3e-41  Score=274.91  Aligned_cols=274  Identities=20%  Similarity=0.293  Sum_probs=245.6

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      |+|+.+|.+||+|+.||.++||+. +|.++.+|..|.+||.++.|+.++    .++++++.|+++.+||..++...+.+.
T Consensus       241 L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G----~yilS~~vD~ttilwd~~~g~~~q~f~  315 (524)
T KOG0273|consen  241 LDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKG----TYILSGGVDGTTILWDAHTGTVKQQFE  315 (524)
T ss_pred             EEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCC----CEEEeccCCccEEEEeccCceEEEeee
Confidence            689999999999999999999995 799999999999999999999954    455569999999999999999999888


Q ss_pred             CCCCe-eeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           82 VPEPV-APLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        82 ~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                      ..+.. ..+.|-.+ ..+++.+.|+.|+++.+....++.++.+|.++|.++.|+|.+.+|++++.|++++||..      
T Consensus       316 ~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~------  388 (524)
T KOG0273|consen  316 FHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM------  388 (524)
T ss_pred             eccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec------
Confidence            66544 77888765 46888899999999999999999999999999999999999999999999999999998      


Q ss_pred             CCCCCCCCccceEeeeccCCCeEEEEEeeCCC-------CceEEEEeCCCcEEEEeCCCCcEEEEE-ecCCceeEEEeCC
Q 035621          161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF-------NSIIISCSMDCTCKFWRLLNGTHLSTV-TFPCAIMGLALDP  232 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~  232 (387)
                            ........+.+|...|..+.|+|.+.       +..+++++.|++|++||+..+.++..| .|..+|.+++|+|
T Consensus       389 ------~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~  462 (524)
T KOG0273|consen  389 ------GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP  462 (524)
T ss_pred             ------CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC
Confidence                  56778888999999999999998753       458999999999999999999999999 5899999999999


Q ss_pred             CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          233 TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       233 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      +|+++++|+.||.|.+|+.+++...        .. . ...+.|..++|+.+|..|..+-.|+.+++-|++
T Consensus       463 ~g~ylAsGs~dg~V~iws~~~~~l~--------~s-~-~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  463 NGRYLASGSLDGCVHIWSTKTGKLV--------KS-Y-QGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCcEEEecCCCCeeEeccccchhee--------Ee-e-cCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            9999999999999999999984322        22 2 346679999999999999999999999999875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4e-41  Score=289.24  Aligned_cols=335  Identities=19%  Similarity=0.235  Sum_probs=272.7

Q ss_pred             CccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc-ccc
Q 035621            1 LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP-LHN   79 (387)
Q Consensus         1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~-~~~   79 (387)
                      +++|+|.+.+|++|+.||.++|||+..+.+...|++|.+.|.++.|+|....  ..+++|..|+++++||+++... +..
T Consensus       110 ~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~--~lL~sg~~D~~v~vwnl~~~~tcl~~  187 (775)
T KOG0319|consen  110 TMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNR--WLLASGATDGTVRVWNLNDKRTCLHT  187 (775)
T ss_pred             EEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccch--hheeecCCCceEEEEEcccCchHHHH
Confidence            3689999999999999999999999999999999999999999999996543  4567799999999999986654 444


Q ss_pred             cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc------------------------------------------
Q 035621           80 IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD------------------------------------------  116 (387)
Q Consensus        80 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------------------------------  116 (387)
                      .. |.+.|++++|++|+..+++++.|..+.+||+.+.+                                          
T Consensus       188 ~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~  267 (775)
T KOG0319|consen  188 MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDS  267 (775)
T ss_pred             HHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEec
Confidence            44 77889999998888888888888888888862211                                          


Q ss_pred             --------------------------------------------------------------------------------
Q 035621          117 --------------------------------------------------------------------------------  116 (387)
Q Consensus       117 --------------------------------------------------------------------------------  116 (387)
                                                                                                      
T Consensus       268 es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~  347 (775)
T KOG0319|consen  268 ESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPE  347 (775)
T ss_pred             ccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCc
Confidence                                                                                            


Q ss_pred             ---------eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621          117 ---------ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC  187 (387)
Q Consensus       117 ---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  187 (387)
                               ....+.+|...|.++....+|.+|++|+.|.++++|.+.+.        .....++....+|...|.++++
T Consensus       348 lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~--------~~~~~~~a~~~gH~~svgava~  419 (775)
T KOG0319|consen  348 LRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN--------CSKSLCVAQANGHTNSVGAVAG  419 (775)
T ss_pred             eEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC--------cchhhhhhhhcccccccceeee
Confidence                     01123467777888875557789999999999999987221        1344566777899999999999


Q ss_pred             eeCCCCceEEEEeCCCcEEEEeCCCCcE---EEEE-------ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621          188 CIGSFNSIIISCSMDCTCKFWRLLNGTH---LSTV-------TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ  257 (387)
Q Consensus       188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  257 (387)
                      +..+ ..+|+++|.|+++++|++...+.   ...+       .|...|++++++|+.+.+++|+.|.+.++|++..    
T Consensus       420 ~~~~-asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~----  494 (775)
T KOG0319|consen  420 SKLG-ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ----  494 (775)
T ss_pred             cccC-ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC----
Confidence            7665 58999999999999999986221   1112       2778999999999999999999999999999985    


Q ss_pred             cccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeE--------EEEecCC
Q 035621          258 QMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEM--------VIATGIG  329 (387)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~  329 (387)
                           ..+...+.+|...|+++.|+|..+.++|++.|++|+||.+++..++++|.+|.. .|...        .++.+.+
T Consensus       495 -----~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~-aVlra~F~~~~~qliS~~ad  568 (775)
T KOG0319|consen  495 -----LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTS-AVLRASFIRNGKQLISAGAD  568 (775)
T ss_pred             -----ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccc-eeEeeeeeeCCcEEEeccCC
Confidence                 355566779999999999999999999999999999999999999999999966 55444        5677888


Q ss_pred             CceeeEEEecCCCCCCCCCcceeeecc
Q 035621          330 GSRGCGVVKTGKAGNDSGGGVFEMYGE  356 (387)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (387)
                      +..++|.++++.+....+.+.-+++.-
T Consensus       569 GliKlWnikt~eC~~tlD~H~DrvWaL  595 (775)
T KOG0319|consen  569 GLIKLWNIKTNECEMTLDAHNDRVWAL  595 (775)
T ss_pred             CcEEEEeccchhhhhhhhhccceeEEE
Confidence            888999999998877666665554443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=7.6e-40  Score=271.16  Aligned_cols=308  Identities=16%  Similarity=0.227  Sum_probs=247.8

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEecc---CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFS---GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      +.|||||+++|+++.||+|.+||-.+|+.+..+.   +|.+.|.++.|+|    ...++++++.|.++++||+.+.++++
T Consensus       196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP----Ds~~~~T~SaDkt~KIWdVs~~slv~  271 (603)
T KOG0318|consen  196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP----DSTQFLTVSADKTIKIWDVSTNSLVS  271 (603)
T ss_pred             EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC----CCceEEEecCCceEEEEEeeccceEE
Confidence            5799999999999999999999999999999997   8999999999999    45666779999999999999999998


Q ss_pred             ccCCCCCe----eeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621           79 NIPVPEPV----APLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        79 ~~~~~~~v----~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  154 (387)
                      ++.....+    ..+-|.  +..|++.+.+|.|.+++......+..+.+|...|+++..+|++++|++|+.||.|.-|+.
T Consensus       272 t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~  349 (603)
T KOG0318|consen  272 TWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS  349 (603)
T ss_pred             EeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence            88865443    334444  668999999999999999999999999999999999999999999999999999999998


Q ss_pred             CcccccCCCCCC-----------------------------------------------------CC-ccc-------eE
Q 035621          155 FQLVDEHTDDKN-----------------------------------------------------PD-DLM-------LQ  173 (387)
Q Consensus       155 ~~~~~~~~~~~~-----------------------------------------------------~~-~~~-------~~  173 (387)
                      ............                                                     .. ...       +.
T Consensus       350 ~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv  429 (603)
T KOG0318|consen  350 GSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIV  429 (603)
T ss_pred             CCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEE
Confidence            543222110000                                                     00 000       00


Q ss_pred             eeecc--------CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE---EEEEecCCceeEEEeCCCCCeEEEEcc
Q 035621          174 KFVAH--------NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH---LSTVTFPCAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       174 ~~~~~--------~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~  242 (387)
                      .++.+        .-...+++++|++  +.++.|+.|+.|++|.+.....   .....|..++++++|+||+.+|+++..
T Consensus       430 ~l~~~~~~~~~~~~y~~s~vAv~~~~--~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da  507 (603)
T KOG0318|consen  430 LLQDQTKVSSIPIGYESSAVAVSPDG--SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA  507 (603)
T ss_pred             EEecCCcceeeccccccceEEEcCCC--CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc
Confidence            01111        1124567778775  8999999999999999987553   344568999999999999999999999


Q ss_pred             CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeE
Q 035621          243 DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEM  322 (387)
Q Consensus       243 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  322 (387)
                      .+.+.+||..+...        ......-|...|.+++|+|+..++|||+.|-.|.||+++.....-.+++.+.+.|+.+
T Consensus       508 ~rkvv~yd~~s~~~--------~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v  579 (603)
T KOG0318|consen  508 SRKVVLYDVASREV--------KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSV  579 (603)
T ss_pred             CCcEEEEEcccCce--------ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeE
Confidence            99999999987432        1111224999999999999999999999999999999998766666776666679998


Q ss_pred             EEE
Q 035621          323 VIA  325 (387)
Q Consensus       323 ~~~  325 (387)
                      .|.
T Consensus       580 ~wl  582 (603)
T KOG0318|consen  580 AWL  582 (603)
T ss_pred             EEe
Confidence            664

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.7e-41  Score=266.88  Aligned_cols=275  Identities=17%  Similarity=0.267  Sum_probs=246.4

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC-Ccccc-c
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-TPLHN-I   80 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-~~~~~-~   80 (387)
                      -|+|+-.++++++.|++|++||..+++....+++|...+..+.|+..+.    .+++++.|-.+++||.++. ++++. +
T Consensus       115 ~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk----~l~tcSsDl~~~LWd~~~~~~c~ks~~  190 (406)
T KOG0295|consen  115 IFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGK----YLATCSSDLSAKLWDFDTFFRCIKSLI  190 (406)
T ss_pred             eeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCcc----EEEecCCccchhheeHHHHHHHHHHhc
Confidence            4789999999999999999999999999999999999999999999554    4555999999999999763 44443 3


Q ss_pred             CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                      .|...|.+++|-|.|.++++++.|.+|+.|++.++.++.++.+|...|..++.+.||.++++++.|.++++|-+      
T Consensus       191 gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~------  264 (406)
T KOG0295|consen  191 GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVV------  264 (406)
T ss_pred             CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEe------
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999988      


Q ss_pred             CCCCCCCCccceEeeeccCCCeEEEEEeeCCC-------------CceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCcee
Q 035621          161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF-------------NSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIM  226 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~  226 (387)
                            ....+...+..|..+|.+++|.|...             ++++.+++.|++|++||+.++.++.++. |...|.
T Consensus       265 ------~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr  338 (406)
T KOG0295|consen  265 ------ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR  338 (406)
T ss_pred             ------ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence                  56667788889999999999976521             3599999999999999999999999987 788999


Q ss_pred             EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621          227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  302 (387)
                      .++|+|.|+||+++..|+++++||++..        .... ....|..-|+++.|..+..+++||+-|.++++|..
T Consensus       339 ~~af~p~Gkyi~ScaDDktlrvwdl~~~--------~cmk-~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  339 GVAFSPGGKYILSCADDKTLRVWDLKNL--------QCMK-TLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeEEcCCCeEEEEEecCCcEEEEEeccc--------eeee-ccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            9999999999999999999999999982        2333 33489999999999999999999999999999974

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.4e-40  Score=263.10  Aligned_cols=281  Identities=17%  Similarity=0.256  Sum_probs=245.8

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      +++.|.+..|++|+.|++|+|||+.+|++..++.+|...|..+++++..    .++++++.|+.|+.||++.++.++.+.
T Consensus       157 vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH----pYlFs~gedk~VKCwDLe~nkvIR~Yh  232 (460)
T KOG0285|consen  157 VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH----PYLFSAGEDKQVKCWDLEYNKVIRHYH  232 (460)
T ss_pred             EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC----ceEEEecCCCeeEEEechhhhhHHHhc
Confidence            5788999999999999999999999999999999999999999999944    444559999999999999999988776


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                       |-..|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++||+      
T Consensus       233 GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl------  306 (460)
T KOG0285|consen  233 GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDL------  306 (460)
T ss_pred             cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeee------
Confidence             6689999999999999999999999999999999999999999999999999998888999999999999999      


Q ss_pred             CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEE
Q 035621          161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFA  239 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~  239 (387)
                            ..++....+..|...+.+++.+|..  ..+++++.| .|+-|++..+..+..+. +..-+++++.+.|+ ++++
T Consensus       307 ------~agkt~~tlt~hkksvral~lhP~e--~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~  376 (460)
T KOG0285|consen  307 ------RAGKTMITLTHHKKSVRALCLHPKE--NLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS  376 (460)
T ss_pred             ------ccCceeEeeecccceeeEEecCCch--hhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEE
Confidence                  6777888899999999999999985  788888876 49999999999888876 66778889888775 8889


Q ss_pred             EccCCcEEEEeccccccccccccc-eeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          240 AGSDGLIYKGLLKYQSRQQMHKGQ-ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       240 ~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      |+.+|.+.+||.+++...+..... .+..+  ..+..|.+.+|...|..|++|..|.+|++|.-+.
T Consensus       377 G~dng~~~fwdwksg~nyQ~~~t~vqpGSl--~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  377 GGDNGSIMFWDWKSGHNYQRGQTIVQPGSL--ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             cCCceEEEEEecCcCcccccccccccCCcc--ccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence            999999999999987654432111 11111  2356799999999999999999999999997543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.5e-39  Score=268.11  Aligned_cols=360  Identities=17%  Similarity=0.195  Sum_probs=261.1

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCC----------------------------------------------CceeEecc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSS----------------------------------------------GAILAHFS   35 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~----------------------------------------------~~~~~~~~   35 (387)
                      ..|||.|.++|+|...|+|+|||...                                              |..+.++.
T Consensus        65 AkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~  144 (603)
T KOG0318|consen   65 AKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEIT  144 (603)
T ss_pred             EEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceee
Confidence            46899999999999999999999743                                              11222344


Q ss_pred             CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC
Q 035621           36 GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK  114 (387)
Q Consensus        36 ~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  114 (387)
                      +|...|+++.|-|.+.+   ++++++.|++|.+|.-.-.+....+. |..-|.|+.|+|||.++++.+.||++.+||-.+
T Consensus       145 GhSr~ins~~~KpsRPf---Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt  221 (603)
T KOG0318|consen  145 GHSRRINSVDFKPSRPF---RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT  221 (603)
T ss_pred             ccceeEeeeeccCCCce---EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence            55555666666553222   46779999999999765445444454 667899999999999999999999999999999


Q ss_pred             CceeEEcc---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCC---------------------------
Q 035621          115 GDILRSFS---AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDD---------------------------  164 (387)
Q Consensus       115 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------------  164 (387)
                      ++.+..+.   +|++.|.+++|+||++.+++++.|.+++|||+..........                           
T Consensus       222 ge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~  301 (603)
T KOG0318|consen  222 GEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT  301 (603)
T ss_pred             ccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence            99999998   899999999999999999999999999999985421100000                           


Q ss_pred             ----CCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-------------------------
Q 035621          165 ----KNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-------------------------  215 (387)
Q Consensus       165 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------------------  215 (387)
                          .......++.+.+|...|+++..++++  .+|++|+.||.|.-||..++..                         
T Consensus       302 in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~--~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t  379 (603)
T KOG0318|consen  302 INYLNPSDPSVLKVISGHNKSITALTVSPDG--KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT  379 (603)
T ss_pred             EEEecccCCChhheecccccceeEEEEcCCC--CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence                002233667788999999999999986  9999999999999999865431                         


Q ss_pred             ------EEEE---------------------------------------------------ecCCceeEEEeCCCCCeEE
Q 035621          216 ------LSTV---------------------------------------------------TFPCAIMGLALDPTETDFF  238 (387)
Q Consensus       216 ------~~~~---------------------------------------------------~~~~~v~~~~~~~~~~~l~  238 (387)
                            ++.+                                                   ...-...+++++|++..++
T Consensus       380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va  459 (603)
T KOG0318|consen  380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA  459 (603)
T ss_pred             EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence                  0000                                                   0111356789999999999


Q ss_pred             EEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCC
Q 035621          239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGS  318 (387)
Q Consensus       239 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  318 (387)
                      +|+.|+.+++|.+........       .....|.++|+++++|||+.|||+|...+.+.+||+.+++.....-.-+...
T Consensus       460 VGG~Dgkvhvysl~g~~l~ee-------~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak  532 (603)
T KOG0318|consen  460 VGGQDGKVHVYSLSGDELKEE-------AKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK  532 (603)
T ss_pred             EecccceEEEEEecCCcccce-------eeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee
Confidence            999999999999987443211       1123799999999999999999999999999999999998854433434568


Q ss_pred             ceeEEEEecC--------CCceeeEEEecCCC------CCCCCCccee-eeccceeccccccchhhhcee
Q 035621          319 ISEMVIATGI--------GGSRGCGVVKTGKA------GNDSGGGVFE-MYGEKLLDLSIKNTIELENVM  373 (387)
Q Consensus       319 v~~~~~~~~~--------~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  373 (387)
                      |.+|++++..        +.++.+|-++....      .+..+..... +-....++..+|-.++.|++.
T Consensus       533 I~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  533 INCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence            8888776533        33345555443221      1111111111 122234445577788888753

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.7e-39  Score=244.50  Aligned_cols=280  Identities=19%  Similarity=0.229  Sum_probs=229.9

Q ss_pred             ccccCC-CcEEEeeCCCCcEEEEeCCC---CceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC--
Q 035621            2 LHHLPC-NEVILTSSPEGPITAYNPSS---GAILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--   74 (387)
Q Consensus         2 l~~s~~-~~~l~~~~~dg~i~iwd~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--   74 (387)
                      ++|+|- |..||+++.|+.|+||+...   ..+...+ .+|...|++++|+|.+.++    ++++.|.++.||.-..+  
T Consensus        20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~L----a~aSFD~t~~Iw~k~~~ef   95 (312)
T KOG0645|consen   20 VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYL----ASASFDATVVIWKKEDGEF   95 (312)
T ss_pred             EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEE----EEeeccceEEEeecCCCce
Confidence            689998 89999999999999999874   3344444 4799999999999965544    45999999999987654  


Q ss_pred             CcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC---ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 035621           75 TPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG---DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIA  150 (387)
Q Consensus        75 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  150 (387)
                      +++..++ |...|.|++|+++|++||+++.|..|.||.+..+   ++...++.|...|..+.|+|...+|++++.|.+|+
T Consensus        96 ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk  175 (312)
T KOG0645|consen   96 ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIK  175 (312)
T ss_pred             eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEE
Confidence            4556665 6789999999999999999999999999998744   56778899999999999999999999999999999


Q ss_pred             EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEe
Q 035621          151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLAL  230 (387)
Q Consensus       151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~  230 (387)
                      +|+-..         .....++.++.+|...|.+++|.+.+  ..|++++.|++++||...+.   ....+...+..+.|
T Consensus       176 ~~~~~~---------dddW~c~~tl~g~~~TVW~~~F~~~G--~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W  241 (312)
T KOG0645|consen  176 VYRDED---------DDDWECVQTLDGHENTVWSLAFDNIG--SRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPW  241 (312)
T ss_pred             EEeecC---------CCCeeEEEEecCccceEEEEEecCCC--ceEEEecCCcceEeeeeccC---cchhcccceEeeee
Confidence            998731         14567899999999999999999885  89999999999999986522   11235678889999


Q ss_pred             CCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC-CCEEEEEeCCCcEEEEECC
Q 035621          231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE-GKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~  303 (387)
                      .  ...|++++.|+.|++|..........  -..+......|...|++++|.|. .++|++|+.||.|++|.+.
T Consensus       242 ~--~~~IaS~ggD~~i~lf~~s~~~d~p~--~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  242 D--NGVIASGGGDDAIRLFKESDSPDEPS--WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             c--ccceEeccCCCEEEEEEecCCCCCch--HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            8  56899999999999997764221111  12222234579999999999995 6799999999999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.8e-39  Score=241.98  Aligned_cols=252  Identities=18%  Similarity=0.257  Sum_probs=214.0

Q ss_pred             eccccCCCCCeEEEEEccCCCcccccCCC-CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc--eeEEccCCCCCeEEE
Q 035621           55 SHISPTTGSGSVHLYNLWSSTPLHNIPVP-EPVAPLATTADGSYLFTGGLSGNVYAISVPKGD--ILRSFSAHDKPVSCL  131 (387)
Q Consensus        55 ~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~  131 (387)
                      ..|++++.|.+|++|...+|.+..+++|+ ..|+.+...|+++.||+++. -.|++||+++++  ++.++.+|...|+++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            34566999999999999999999999987 57999999999999999875 459999998775  588999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC
Q 035621          132 KISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL  211 (387)
Q Consensus       132 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  211 (387)
                      .|..+|+++++|++||+++|||++.            . .......|..+|+++..+|+.  ..|++|..+|.|++||+.
T Consensus        90 gF~~dgrWMyTgseDgt~kIWdlR~------------~-~~qR~~~~~spVn~vvlhpnQ--teLis~dqsg~irvWDl~  154 (311)
T KOG0315|consen   90 GFQCDGRWMYTGSEDGTVKIWDLRS------------L-SCQRNYQHNSPVNTVVLHPNQ--TELISGDQSGNIRVWDLG  154 (311)
T ss_pred             EEeecCeEEEecCCCceEEEEeccC------------c-ccchhccCCCCcceEEecCCc--ceEEeecCCCcEEEEEcc
Confidence            9999999999999999999999953            2 233444577999999999885  789999999999999999


Q ss_pred             CCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEE
Q 035621          212 NGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLV  289 (387)
Q Consensus       212 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  289 (387)
                      +..+...+.  ....+.++...|||.+++++...|+.++|++.......   ...+...++.|.+.+..+.+|||+++||
T Consensus       155 ~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s---~l~P~~k~~ah~~~il~C~lSPd~k~la  231 (311)
T KOG0315|consen  155 ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS---ELEPVHKFQAHNGHILRCLLSPDVKYLA  231 (311)
T ss_pred             CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc---cceEhhheecccceEEEEEECCCCcEEE
Confidence            887776664  34689999999999999999999999999998733222   2334444678999999999999999999


Q ss_pred             EEeCCCcEEEEECCCc-cEEEEeecccCCCceeEEEEe
Q 035621          290 SAAEDGSVYIWEIEKR-QVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       290 s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      +++.|.+++||+.++. +....+++|. +-+.+-+|+.
T Consensus       232 t~ssdktv~iwn~~~~~kle~~l~gh~-rWvWdc~FS~  268 (311)
T KOG0315|consen  232 TCSSDKTVKIWNTDDFFKLELVLTGHQ-RWVWDCAFSA  268 (311)
T ss_pred             eecCCceEEEEecCCceeeEEEeecCC-ceEEeeeecc
Confidence            9999999999999998 6667777764 4666666654

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.6e-39  Score=262.62  Aligned_cols=296  Identities=20%  Similarity=0.325  Sum_probs=251.3

Q ss_pred             ccccCCCc-EEEeeCCCCcEEEEeCCCC----ceeEecc------C----CCCCceeEEEcCccceeeeccccCCCCCeE
Q 035621            2 LHHLPCNE-VILTSSPEGPITAYNPSSG----AILAHFS------G----SRSPRRGLTFAGKPFIAASHISPTTGSGSV   66 (387)
Q Consensus         2 l~~s~~~~-~l~~~~~dg~i~iwd~~~~----~~~~~~~------~----~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v   66 (387)
                      .+|+|-.. ++++|+.|-..++|++...    .....|+      +    ....|++++|+.++    +.|++|+.||.+
T Consensus       184 ~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G----~~LatG~~~G~~  259 (524)
T KOG0273|consen  184 CAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG----TLLATGSEDGEA  259 (524)
T ss_pred             EecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC----CeEEEeecCcEE
Confidence            46899766 9999999999999998641    1111111      1    23459999999954    455569999999


Q ss_pred             EEEEccCCCccccc-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC
Q 035621           67 HLYNLWSSTPLHNI-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD  145 (387)
Q Consensus        67 ~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  145 (387)
                      ++|+.. |.++..+ .|.++|.++.|+..|.||++++.|+++.+||..+++....+.-|..+-..+.|-.+ ..+++++.
T Consensus       260 riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~t  337 (524)
T KOG0273|consen  260 RIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSST  337 (524)
T ss_pred             EEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCC
Confidence            999974 5555555 48899999999999999999999999999999999999999988888778888754 46999999


Q ss_pred             CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCc
Q 035621          146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCA  224 (387)
Q Consensus       146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~  224 (387)
                      |+.|+++.+            ....++.++.+|.++|.++.|.|.+  .+|++++.|++++||.+........+. |...
T Consensus       338 d~~i~V~kv------------~~~~P~~t~~GH~g~V~alk~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske  403 (524)
T KOG0273|consen  338 DGCIHVCKV------------GEDRPVKTFIGHHGEVNALKWNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE  403 (524)
T ss_pred             CceEEEEEe------------cCCCcceeeecccCceEEEEECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccc
Confidence            999999999            6778999999999999999999985  999999999999999999888888777 7788


Q ss_pred             eeEEEeCCCC---------CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621          225 IMGLALDPTE---------TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG  295 (387)
Q Consensus       225 v~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  295 (387)
                      |..+.|+|+|         ..+++++.|+.|++||+..        +.++.. +..|..+|.+++|+|+|+++|+|+.||
T Consensus       404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~--------gv~i~~-f~kH~~pVysvafS~~g~ylAsGs~dg  474 (524)
T KOG0273|consen  404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES--------GVPIHT-LMKHQEPVYSVAFSPNGRYLASGSLDG  474 (524)
T ss_pred             eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC--------CceeEe-eccCCCceEEEEecCCCcEEEecCCCC
Confidence            9999999875         4689999999999999997        444444 447999999999999999999999999


Q ss_pred             cEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621          296 SVYIWEIEKRQVVMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       296 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  328 (387)
                      .|.+|+.+++++++...+.  +.|..++|....
T Consensus       475 ~V~iws~~~~~l~~s~~~~--~~Ifel~Wn~~G  505 (524)
T KOG0273|consen  475 CVHIWSTKTGKLVKSYQGT--GGIFELCWNAAG  505 (524)
T ss_pred             eeEeccccchheeEeecCC--CeEEEEEEcCCC
Confidence            9999999999999999865  468888887655

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.1e-40  Score=284.94  Aligned_cols=269  Identities=19%  Similarity=0.253  Sum_probs=227.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-cc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NI   80 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~   80 (387)
                      ..||+|+.+||.|-.|..|++|.+... .++.+++. ..+..             +-+.+.|-.+.+.|-....... ..
T Consensus       384 a~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~-~~l~~-------------~d~~sad~~~~~~D~~~~~~~~~L~  448 (707)
T KOG0263|consen  384 AEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDA-SDLSN-------------IDTESADVDVDMLDDDSSGTSRTLY  448 (707)
T ss_pred             EeecCCcchhhccccccEEEEEecchh-hhccccch-hhhcc-------------ccccccchhhhhccccCCceeEEee
Confidence            358899999999999999999998644 33334321 11111             1113334445555555444333 45


Q ss_pred             CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                      .|.++|..+.|+|+.++|++++.|+++++|.+.+..++..+++|..+|..+.|+|.|-++++++.|++.++|..      
T Consensus       449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~------  522 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST------  522 (707)
T ss_pred             cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec------
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999998      


Q ss_pred             CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEE
Q 035621          161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFA  239 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~  239 (387)
                            ....+.+.+.+|.+.|.|+.|+|+.  .++++||.|.++|+||..+|..++.|. |..+|.+++|+|+|++|++
T Consensus       523 ------d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS  594 (707)
T KOG0263|consen  523 ------DHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS  594 (707)
T ss_pred             ------ccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence                  5567888999999999999999996  999999999999999999999999998 8899999999999999999


Q ss_pred             EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621          240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV  308 (387)
Q Consensus       240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  308 (387)
                      |+.||.|.+||+..+.         +...+.+|.+.|.++.|+.+|..||+|+.|.+|++||+..-...
T Consensus       595 g~ed~~I~iWDl~~~~---------~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  595 GDEDGLIKIWDLANGS---------LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             cccCCcEEEEEcCCCc---------chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            9999999999999843         33334589999999999999999999999999999998765444

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=9.3e-41  Score=263.43  Aligned_cols=275  Identities=15%  Similarity=0.249  Sum_probs=237.4

Q ss_pred             ccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-C
Q 035621            4 HLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-V   82 (387)
Q Consensus         4 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~   82 (387)
                      .--|...+++|..|++|+|||.++..+...+.||++.|.|+.|...      .+++|+.|.+|++||+++++++.++- |
T Consensus       203 lQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r------viisGSSDsTvrvWDv~tge~l~tlihH  276 (499)
T KOG0281|consen  203 LQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER------VIVSGSSDSTVRVWDVNTGEPLNTLIHH  276 (499)
T ss_pred             EEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce------EEEecCCCceEEEEeccCCchhhHHhhh
Confidence            3346678999999999999999999999999999999999999874      44559999999999999999999877 4


Q ss_pred             CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc---eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccc
Q 035621           83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD---ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVD  159 (387)
Q Consensus        83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  159 (387)
                      -+.|..+.|+.  .++++++.|.++.+||+....   +.+.+.+|...|+.+.|+  .+++++++.|.+|++|++     
T Consensus       277 ceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~-----  347 (499)
T KOG0281|consen  277 CEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST-----  347 (499)
T ss_pred             cceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec-----
Confidence            57899999975  589999999999999997664   334567999999999994  569999999999999999     


Q ss_pred             cCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEE
Q 035621          160 EHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFF  238 (387)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~  238 (387)
                             .+...++.+.+|...|.|+.+.    ++++++|+.|.+|++||+..|.+++.++ |+.-|.++.|  +.+.++
T Consensus       348 -------st~efvRtl~gHkRGIAClQYr----~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIV  414 (499)
T KOG0281|consen  348 -------STCEFVRTLNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIV  414 (499)
T ss_pred             -------cceeeehhhhcccccceehhcc----CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceee
Confidence                   7888999999999999988763    5899999999999999999999999998 6778999999  467899


Q ss_pred             EEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621          239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV  308 (387)
Q Consensus       239 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  308 (387)
                      +|+.||.|++||+..+.................|.+.|..+.|  |...+++++.|.+|.|||+.++-.-
T Consensus       415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence            9999999999999986554443333344445679999999999  5678999999999999999887654

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.3e-38  Score=269.27  Aligned_cols=303  Identities=17%  Similarity=0.292  Sum_probs=258.1

Q ss_pred             ccccCCCcEEEeeCCC-CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNEVILTSSPE-GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++|+..|+.||.|+.. |.+-||+.++...+...++|...+++++++|++.+.    ++|+.||.|++||..++-+..++
T Consensus       313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~i----aTG~eDgKVKvWn~~SgfC~vTF  388 (893)
T KOG0291|consen  313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLI----ATGAEDGKVKVWNTQSGFCFVTF  388 (893)
T ss_pred             EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEE----EeccCCCcEEEEeccCceEEEEe
Confidence            4677889999998764 799999999999899999999999999999965554    45999999999999999999988


Q ss_pred             C-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCC-CCCeEEEEEcCCCCEEEEEeCCC-cEEEEeCCcc
Q 035621           81 P-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH-DKPVSCLKISPDGSLLISGGDDG-VIATVPIFQL  157 (387)
Q Consensus        81 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~  157 (387)
                      . |...|+.+.|+..|+.+++.+.||+|+.||+...+..+++... .-...|++..|.|..++.|+.|. .|.+|++   
T Consensus       389 teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~---  465 (893)
T KOG0291|consen  389 TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSV---  465 (893)
T ss_pred             ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEe---
Confidence            7 7789999999999999999999999999999999998888743 34568999999999999999886 5999999   


Q ss_pred             cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-cEEEEEecCCceeEEEeCCCCCe
Q 035621          158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-THLSTVTFPCAIMGLALDPTETD  236 (387)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~  236 (387)
                               ++++.+..+.+|.+||.+++|+|.+  +.|+++|+|.+|++||+-.. ....+++....+..++|+|+|+.
T Consensus       466 ---------qTGqllDiLsGHEgPVs~l~f~~~~--~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~e  534 (893)
T KOG0291|consen  466 ---------QTGQLLDILSGHEGPVSGLSFSPDG--SLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKE  534 (893)
T ss_pred             ---------ecCeeeehhcCCCCcceeeEEcccc--CeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCe
Confidence                     7889999999999999999999986  89999999999999998654 46677888999999999999999


Q ss_pred             EEEEccCCcEEEEecccccccccccc-----------ceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621          237 FFAAGSDGLIYKGLLKYQSRQQMHKG-----------QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       237 l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  305 (387)
                      +++++-||.|.+||.+.........+           ..............+.+++++||.+|++||..+.|++|++.++
T Consensus       535 laVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~  614 (893)
T KOG0291|consen  535 LAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG  614 (893)
T ss_pred             EEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence            99999999999999987543321111           1111111233467999999999999999999999999999999


Q ss_pred             cEEEEeecccCCCceeE
Q 035621          306 QVVMVLKNELAGSISEM  322 (387)
Q Consensus       306 ~~~~~~~~~~~~~v~~~  322 (387)
                      -+++.+.-..+-+..++
T Consensus       615 vllkkfqiS~N~sLdg~  631 (893)
T KOG0291|consen  615 VLLKKFQISDNRSLDGV  631 (893)
T ss_pred             heeeeEEeccccchhHH
Confidence            99999876544444443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.9e-39  Score=244.87  Aligned_cols=277  Identities=19%  Similarity=0.318  Sum_probs=247.0

Q ss_pred             cCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCC
Q 035621            5 LPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPE   84 (387)
Q Consensus         5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~   84 (387)
                      .|+|-+|++++.||.-.+-+-.+|..+.+|.+|.+.|++...+.+    +..-++++.|-+.++||.-+|..++.+.|..
T Consensus        26 tp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~n----a~~aasaaadftakvw~a~tgdelhsf~hkh  101 (334)
T KOG0278|consen   26 TPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKN----ATRAASAAADFTAKVWDAVTGDELHSFEHKH  101 (334)
T ss_pred             CCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCch----hhhhhhhcccchhhhhhhhhhhhhhhhhhhh
Confidence            368999999999999999999999999999999999999999884    4455569999999999999999999999999


Q ss_pred             CeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621           85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGD-ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      -|..++|+.|.++|++|+.+..+++||++..+ +...+.+|.+.|..+.|....+.+++++.|++|++||.         
T Consensus       102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~---------  172 (334)
T KOG0278|consen  102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH---------  172 (334)
T ss_pred             eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe---------
Confidence            99999999999999999999999999997653 56678899999999999998899999999999999999         


Q ss_pred             CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC
Q 035621          164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD  243 (387)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  243 (387)
                         .++..++++. ...+|+++.+++++  ++ ++-...+.|.+||..+...++.+..+..|.+..++|+...+++|++|
T Consensus       173 ---rTgt~v~sL~-~~s~VtSlEvs~dG--~i-lTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged  245 (334)
T KOG0278|consen  173 ---RTGTEVQSLE-FNSPVTSLEVSQDG--RI-LTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGED  245 (334)
T ss_pred             ---ccCcEEEEEe-cCCCCcceeeccCC--CE-EEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcc
Confidence               5666677665 46789999999885  55 45556788999999999999999999999999999999999999999


Q ss_pred             CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEE
Q 035621          244 GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVM  309 (387)
Q Consensus       244 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  309 (387)
                      ..++.||..++        .++....++|.++|.|+.|+|+|...++|++||+|++|....++...
T Consensus       246 ~~~~kfDy~Tg--------eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~  303 (334)
T KOG0278|consen  246 FKVYKFDYNTG--------EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYG  303 (334)
T ss_pred             eEEEEEeccCC--------ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchh
Confidence            99999999984        44444456899999999999999999999999999999988776553

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.7e-38  Score=243.85  Aligned_cols=272  Identities=17%  Similarity=0.236  Sum_probs=233.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCC-CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPS-SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      +.|+|+|.+||+|+.|..|.+|++. .-+....+++|.++|..+.|.++    .+.+++++.|.+++.||.++|+..+.+
T Consensus        53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d----~s~i~S~gtDk~v~~wD~~tG~~~rk~  128 (338)
T KOG0265|consen   53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD----GSHILSCGTDKTVRGWDAETGKRIRKH  128 (338)
T ss_pred             EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC----CCEEEEecCCceEEEEecccceeeehh
Confidence            4799999999999999999999954 44567788999999999999994    455666999999999999999999888


Q ss_pred             C-CCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621           81 P-VPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        81 ~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                      + |..-|+.+.-+.-| .++.+++.|+++++||+++.+.++++. .+..++++.|..++..+++|+-|+.|++||+    
T Consensus       129 k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~----  203 (338)
T KOG0265|consen  129 KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDL----  203 (338)
T ss_pred             ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeecc----
Confidence            8 45567777744444 456678899999999999999888875 4678999999999999999999999999999    


Q ss_pred             ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC----cEEEEEe-----cCCceeEEE
Q 035621          159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG----THLSTVT-----FPCAIMGLA  229 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~-----~~~~v~~~~  229 (387)
                              ........+.+|.++|+.+..++++  .++.+-+.|.++++||++..    .++..+.     .......++
T Consensus       204 --------r~~d~~~~lsGh~DtIt~lsls~~g--s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs  273 (338)
T KOG0265|consen  204 --------RKNDGLYTLSGHADTITGLSLSRYG--SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS  273 (338)
T ss_pred             --------ccCcceEEeecccCceeeEEeccCC--CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence                    5667889999999999999999885  89999999999999999853    3355554     234567889


Q ss_pred             eCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          230 LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       230 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      |+|++..+-+|+.|..+++||...         ..+...+.+|.+.|++++|+|...+|.+++.|.+|++=+
T Consensus       274 wsp~~~~i~ags~dr~vyvwd~~~---------r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  274 WSPNGTKITAGSADRFVYVWDTTS---------RRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             ccCCCCccccccccceEEEeeccc---------ccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            999999999999999999999886         355556679999999999999999999999999998743

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.2e-39  Score=267.32  Aligned_cols=273  Identities=15%  Similarity=0.235  Sum_probs=233.4

Q ss_pred             ccccC-CCcEEEeeCCCCcEEEEeCCC-CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621            2 LHHLP-CNEVILTSSPEGPITAYNPSS-GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         2 l~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~   79 (387)
                      +.|.| .+.+|++++.|+.|+||++.. +.+++++.+|..+|.+++|++    ....+.+++.|+.+++||+++|+++..
T Consensus       220 i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~----~g~~fLS~sfD~~lKlwDtETG~~~~~  295 (503)
T KOG0282|consen  220 IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN----CGTSFLSASFDRFLKLWDTETGQVLSR  295 (503)
T ss_pred             hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc----cCCeeeeeecceeeeeeccccceEEEE
Confidence            46777 789999999999999999976 899999999999999999999    445566699999999999999999999


Q ss_pred             cCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621           80 IPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        80 ~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                      +.....++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++++++++.+.|+++++|+.+.  
T Consensus       296 f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~--  373 (503)
T KOG0282|consen  296 FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI--  373 (503)
T ss_pred             EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC--
Confidence            9999999999999988 8899999999999999999999999999999999999999999999999999999999843  


Q ss_pred             ccCCCCCCCCccceEe-eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE---EEEe---cCCceeEEEeC
Q 035621          159 DEHTDDKNPDDLMLQK-FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL---STVT---FPCAIMGLALD  231 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~---~~~~v~~~~~~  231 (387)
                                ...++. ...+.....++..+|..  .+++.-+.|..|.+|.+...-.+   ..+.   ..+.-..+.||
T Consensus       374 ----------~v~ik~i~~~~~hsmP~~~~~P~~--~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS  441 (503)
T KOG0282|consen  374 ----------PVPIKNIADPEMHTMPCLTLHPNG--KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS  441 (503)
T ss_pred             ----------CccchhhcchhhccCcceecCCCC--CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence                      222221 22233456678888875  89999999999999987543222   1222   35667889999


Q ss_pred             CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCCCcEEEEE
Q 035621          232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWE  301 (387)
Q Consensus       232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd  301 (387)
                      |||.+|++|+.||.+.+||.++         ..+...+..|.+++..+.|+|.. ..+||++.||.|++|+
T Consensus       442 pDG~~l~SGdsdG~v~~wdwkt---------~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  442 PDGRTLCSGDSDGKVNFWDWKT---------TKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCCCeEEeecCCccEEEeechh---------hhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            9999999999999999999998         33444456899999999999964 5899999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.7e-37  Score=261.13  Aligned_cols=273  Identities=22%  Similarity=0.381  Sum_probs=239.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|+|++++|++++.||.|++|+..+++....+..|...+..+.|.++.    ..+++++.+|.+++|++.+++....+.
T Consensus        15 ~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~~~~i~i~~~~~~~~~~~~~   90 (289)
T cd00200          15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG----TYLASGSSDKTIRLWDLETGECVRTLT   90 (289)
T ss_pred             EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC----CEEEEEcCCCeEEEEEcCcccceEEEe
Confidence            5799999999999999999999999988888889999999999999965    344558889999999999877766665


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                       +...+.++.|+++++++++++.+|.+.+||+++++....+..|...+.+++|+|++.++++++.|+.|++||+      
T Consensus        91 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~------  164 (289)
T cd00200          91 GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL------  164 (289)
T ss_pred             ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc------
Confidence             4568999999999888988888999999999989888888889999999999999989988888999999999      


Q ss_pred             CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE-ecCCceeEEEeCCCCCeEEE
Q 035621          161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV-TFPCAIMGLALDPTETDFFA  239 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~  239 (387)
                            ........+..|...+.++.|+|++  +.+++++.|+.+++||+++++.+..+ .+...+.+++|+|++.++++
T Consensus       165 ------~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  236 (289)
T cd00200         165 ------RTGKCVATLTGHTGEVNSVAFSPDG--EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS  236 (289)
T ss_pred             ------cccccceeEecCccccceEEECCCc--CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence                  4455667777888899999999885  78888888999999999999988888 47779999999999888888


Q ss_pred             EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      ++.+|.|++|++...         .....+..|...|.+++|+|++++|++++.||.|++|+
T Consensus       237 ~~~~~~i~i~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         237 GSEDGTIRVWDLRTG---------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EcCCCcEEEEEcCCc---------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            888999999999862         22222347888999999999999999999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.8e-38  Score=251.23  Aligned_cols=256  Identities=21%  Similarity=0.351  Sum_probs=227.8

Q ss_pred             CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCc
Q 035621           28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGN  106 (387)
Q Consensus        28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~  106 (387)
                      .+..+.+++|.+.|.|+++.|.    ..++++|+.|++++|||+.++++..++. |-+.|..+++++-..|+++++.|+.
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~----n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~  216 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPG----NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ  216 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCC----ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe
Confidence            3455677899999999999994    4566679999999999999999998888 7789999999999999999999999


Q ss_pred             EEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEE
Q 035621          107 VYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAIT  186 (387)
Q Consensus       107 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  186 (387)
                      |+.||++..+.++.+.+|-..|.|++.+|.-+.|++|+.|.++++||+            .....+..+.+|..+|.++.
T Consensus       217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDi------------Rtr~~V~~l~GH~~~V~~V~  284 (460)
T KOG0285|consen  217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDI------------RTRASVHVLSGHTNPVASVM  284 (460)
T ss_pred             eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeee------------cccceEEEecCCCCcceeEE
Confidence            999999999999999999999999999999999999999999999999            57778899999999999999


Q ss_pred             EeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccccee
Q 035621          187 CCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQEL  265 (387)
Q Consensus       187 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  265 (387)
                      +.|..  ..+++|+.|++|++||++.++....+. |...+.+++.+|....+++++.| .|+-|++..+..        +
T Consensus       285 ~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f--------~  353 (460)
T KOG0285|consen  285 CQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEF--------L  353 (460)
T ss_pred             eecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccch--------h
Confidence            98774  789999999999999999999888877 67889999999999888888876 688899887432        2


Q ss_pred             EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      .. +.+|...|++++...|+ ++++|+..|.+.+||.++|...+.+.
T Consensus       354 ~n-lsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~  398 (460)
T KOG0285|consen  354 QN-LSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQ  398 (460)
T ss_pred             hc-cccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccc
Confidence            22 45899999999998775 88999999999999999997776653

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.2e-38  Score=270.16  Aligned_cols=367  Identities=17%  Similarity=0.206  Sum_probs=284.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccC-CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSG-SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++.+||+++|++++..+.+++|++.+++.++.++. |+.||.-++|+|..    ..+++|+.|+.+++||+..+.+...+
T Consensus        68 ~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g----~LlAtggaD~~v~VWdi~~~~~th~f  143 (775)
T KOG0319|consen   68 LALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG----TLLATGGADGRVKVWDIKNGYCTHSF  143 (775)
T ss_pred             eeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCC----ceEEeccccceEEEEEeeCCEEEEEe
Confidence            46789999999999999999999999999999988 99999999999954    45556999999999999999999999


Q ss_pred             C-CCCCeeeEEeccCCC--EEEEecCCCcEEEEeCCCCc-eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621           81 P-VPEPVAPLATTADGS--YLFTGGLSGNVYAISVPKGD-ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        81 ~-~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      + |++.|..+.|+|+-+  .|++|..|+.+++||+++.. ++..+..|...|++++|.+|+..+++++.|..+.+||+.+
T Consensus       144 kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~  223 (775)
T KOG0319|consen  144 KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ  223 (775)
T ss_pred             cCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh
Confidence            8 589999999999754  58899999999999998554 4788889999999999999999999999999999999842


Q ss_pred             ccccCCC------------------------------------------------C-CC---------------------
Q 035621          157 LVDEHTD------------------------------------------------D-KN---------------------  166 (387)
Q Consensus       157 ~~~~~~~------------------------------------------------~-~~---------------------  166 (387)
                      .......                                                + ..                     
T Consensus       224 ~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQ  303 (775)
T KOG0319|consen  224 YKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQ  303 (775)
T ss_pred             hhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccc
Confidence            2100000                                                0 00                     


Q ss_pred             -------------------------------------------------CCccceEeeeccCCCeEEEEEeeCCCCceEE
Q 035621          167 -------------------------------------------------PDDLMLQKFVAHNDSVTAITCCIGSFNSIII  197 (387)
Q Consensus       167 -------------------------------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  197 (387)
                                                                       ......+.+.+|...|.++....+  |.+|+
T Consensus       304 nl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~--g~lla  381 (775)
T KOG0319|consen  304 NLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSS--GDLLA  381 (775)
T ss_pred             eEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeeccc--CcEEE
Confidence                                                             000111234678888888884444  47999


Q ss_pred             EEeCCCcEEEEeCCCCcEE----EEEe-cCCceeEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeeccc
Q 035621          198 SCSMDCTCKFWRLLNGTHL----STVT-FPCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANR  271 (387)
Q Consensus       198 s~~~d~~i~iwd~~~~~~~----~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  271 (387)
                      ||+.|.++++|.++++...    .... |...|.+++++..+ .++++++.|+++++|++....................
T Consensus       382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a  461 (775)
T KOG0319|consen  382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA  461 (775)
T ss_pred             EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence            9999999999988554332    2222 77899999998766 6788899999999999987322221111122223457


Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe--------cCCCceeeEEEecCCCC
Q 035621          272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT--------GIGGSRGCGVVKTGKAG  343 (387)
Q Consensus       272 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~~~~~  343 (387)
                      |...|++++.+|+.+++|||+.|.+.+||+++..+++..+.+|.. .|.++-|++        +.|..+++|-+.++..-
T Consensus       462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl  540 (775)
T KOG0319|consen  462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL  540 (775)
T ss_pred             hcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc-ceEEEEeccccceeEeccCCceEEEEEeccceee
Confidence            999999999999999999999999999999999999999999965 677775554        34555799988877653


Q ss_pred             CCCCCcc-------eeeeccceeccccccchhhhceeee
Q 035621          344 NDSGGGV-------FEMYGEKLLDLSIKNTIELENVMTV  375 (387)
Q Consensus       344 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  375 (387)
                      .+..++.       +.--+.+.++..+++.+++|+.-+-
T Consensus       541 kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~  579 (775)
T KOG0319|consen  541 KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN  579 (775)
T ss_pred             eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence            3222222       2234556777779999999998543

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.4e-37  Score=276.02  Aligned_cols=275  Identities=21%  Similarity=0.349  Sum_probs=239.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc-cCCCccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL-WSSTPLH   78 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~-~~~~~~~   78 (387)
                      +.|+|+|+.+++++.++.+++|+..+.+  ....+.+|...|.+++|+|++.    .+++++.|+++++||+ ..+..++
T Consensus       165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~----~l~s~s~D~tiriwd~~~~~~~~~  240 (456)
T KOG0266|consen  165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS----YLLSGSDDKTLRIWDLKDDGRNLK  240 (456)
T ss_pred             EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc----EEEEecCCceEEEeeccCCCeEEE
Confidence            4799999999999999999999998877  7888899999999999999665    4555999999999999 5557777


Q ss_pred             ccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621           79 NIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL  157 (387)
Q Consensus        79 ~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  157 (387)
                      .+. |...|++++|+|+++++++|+.|++|++||+++++++..+.+|...|++++|++++++|++++.|+.|++||+.  
T Consensus       241 ~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~--  318 (456)
T KOG0266|consen  241 TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE--  318 (456)
T ss_pred             EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECC--
Confidence            775 78899999999999999999999999999999999999999999999999999999999999999999999993  


Q ss_pred             cccCCCCCCCCcc--ceEeeeccCCC--eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCC---ceeEEE
Q 035621          158 VDEHTDDKNPDDL--MLQKFVAHNDS--VTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPC---AIMGLA  229 (387)
Q Consensus       158 ~~~~~~~~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~---~v~~~~  229 (387)
                                ...  +...+..+...  ++++.|+|++  .++++++.|+.+++||+..+.....+. +..   .+.+..
T Consensus       319 ----------~~~~~~~~~~~~~~~~~~~~~~~fsp~~--~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  319 ----------TGSKLCLKLLSGAENSAPVTSVQFSPNG--KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             ----------CCceeeeecccCCCCCCceeEEEECCCC--cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence                      344  34566666555  9999999885  999999999999999999998888876 333   344556


Q ss_pred             eCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccc-cccEEEEEEecCCCEEEEEe--CCCcEEEEECC
Q 035621          230 LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH-DGVVVSVMMMNEGKNLVSAA--EDGSVYIWEIE  303 (387)
Q Consensus       230 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~  303 (387)
                      .++.+.++++|+.|+.|++|++.+..         ....+.+| ...+..+.++|..+++++++  .|+.+++|..+
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s~~---------~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSSGG---------ILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCccc---------hhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            68899999999999999999999732         22334478 88899999999999999988  78999999754

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.3e-37  Score=243.96  Aligned_cols=288  Identities=16%  Similarity=0.224  Sum_probs=238.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++.+|+.++++||+.|..-.+|+..++....++.+|...|+++.|+.++.+    ++||..+|.|+||+..++.....+.
T Consensus        70 vsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgtl----LATGdmsG~v~v~~~stg~~~~~~~  145 (399)
T KOG0296|consen   70 VSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTL----LATGDMSGKVLVFKVSTGGEQWKLD  145 (399)
T ss_pred             EEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceE----EEecCCCccEEEEEcccCceEEEee
Confidence            467899999999999999999999999999999999999999999996555    4559999999999999998877775


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                       .-+.+.-+.|+|.+..|++|+.||.+.+|.+.+....+.+.+|+.++++=.|.|+|+.++++..||+|++|++......
T Consensus       146 ~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~  225 (399)
T KOG0296|consen  146 QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPL  225 (399)
T ss_pred             cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCcee
Confidence             4467888999999999999999999999999998888999999999999999999999999999999999999654222


Q ss_pred             CCCCC-------------------------------CCCccceEeee--------ccCCCeEEEEEeeCCC-CceEEEEe
Q 035621          161 HTDDK-------------------------------NPDDLMLQKFV--------AHNDSVTAITCCIGSF-NSIIISCS  200 (387)
Q Consensus       161 ~~~~~-------------------------------~~~~~~~~~~~--------~~~~~i~~~~~~~~~~-~~~l~s~~  200 (387)
                      .....                               ...++.+....        .+...+.++.+.|... =.+.++|+
T Consensus       226 ~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~  305 (399)
T KOG0296|consen  226 HKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS  305 (399)
T ss_pred             EEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc
Confidence            11110                               00111111111        2223333444333321 15788999


Q ss_pred             CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEE
Q 035621          201 MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVM  280 (387)
Q Consensus       201 ~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  280 (387)
                      -||+|.|||+...+..+...|+.+|..+.|-+ ..+|++++.+|.|+.||.+++         .+...+.+|...|.+++
T Consensus       306 vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG---------~l~~~y~GH~~~Il~f~  375 (399)
T KOG0296|consen  306 VDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG---------QLKFTYTGHQMGILDFA  375 (399)
T ss_pred             ccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeecccc---------ceEEEEecCchheeEEE
Confidence            99999999999999988999999999999999 889999999999999999983         33444569999999999


Q ss_pred             EecCCCEEEEEeCCCcEEEEECC
Q 035621          281 MMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       281 ~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      ++|++++++|++.|++.+||++.
T Consensus       376 ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  376 LSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EcCCCcEEEEecCCCeEEEEecC
Confidence            99999999999999999999875

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.6e-38  Score=264.50  Aligned_cols=284  Identities=14%  Similarity=0.183  Sum_probs=251.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      +.|+|....++++-.+|.|.|||.++...++.+.-..-||++..|-+    --.++++|+.|..|++|+.++++.+..+.
T Consensus        19 Vd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia----RknWiv~GsDD~~IrVfnynt~ekV~~Fe   94 (794)
T KOG0276|consen   19 VDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA----RKNWIVTGSDDMQIRVFNYNTGEKVKTFE   94 (794)
T ss_pred             eecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee----ccceEEEecCCceEEEEecccceeeEEee
Confidence            57899999999999999999999999999999998889999999988    34566679999999999999999999998


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCccc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                       |++-|.+++.+|...++++++.|-.|++||.+.. .+.+++.+|...|.+++|+| |.+.+++++-|++|++|.+    
T Consensus        95 AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl----  170 (794)
T KOG0276|consen   95 AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL----  170 (794)
T ss_pred             ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc----
Confidence             7889999999999999999999999999999765 67889999999999999999 6779999999999999999    


Q ss_pred             ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeE
Q 035621          159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDF  237 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l  237 (387)
                              ....+..++.+|...|+++.+-+.++..+|++|+.|.+++|||..+.+|++++. |...|..+.|+|.-..+
T Consensus       171 --------gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii  242 (794)
T KOG0276|consen  171 --------GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPII  242 (794)
T ss_pred             --------CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEE
Confidence                    677788999999999999999999888999999999999999999999999998 78899999999999999


Q ss_pred             EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEe
Q 035621          238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVL  311 (387)
Q Consensus       238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (387)
                      ++|+.||++++|...+...         ...+.-.-.++++++-.+.++.++.|..+|.|. ..+...++...+
T Consensus       243 isgsEDGTvriWhs~Ty~l---------E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP~vsM  306 (794)
T KOG0276|consen  243 ISGSEDGTVRIWNSKTYKL---------EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEPAVSM  306 (794)
T ss_pred             EEecCCccEEEecCcceeh---------hhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCCceee
Confidence            9999999999999887322         222334567899999998888888888777654 344444444333

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.6e-38  Score=248.13  Aligned_cols=273  Identities=17%  Similarity=0.234  Sum_probs=238.6

Q ss_pred             ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNV  107 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i  107 (387)
                      ...+.+.+|..+|+.+-|+|...+.+    +++.|++|++||..+++....++ |.+.+..++|+..|+++++++.|-.+
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~----~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~  174 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVV----SASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSA  174 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEE----EecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence            34556678999999999999655554    48899999999999999988877 66789999999999999999999999


Q ss_pred             EEEeCCC-CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEE
Q 035621          108 YAISVPK-GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAIT  186 (387)
Q Consensus       108 ~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  186 (387)
                      .+||..+ .++++.+.+|...|.++.|-|.|.++++++.|.+|+.|++            .++.++.++.+|...|..++
T Consensus       175 ~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~------------~tg~cv~t~~~h~ewvr~v~  242 (406)
T KOG0295|consen  175 KLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWEC------------DTGYCVKTFPGHSEWVRMVR  242 (406)
T ss_pred             hheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEec------------ccceeEEeccCchHhEEEEE
Confidence            9999876 5677888899999999999999999999999999999999            78889999999999999988


Q ss_pred             EeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCC---------------CCeEEEEccCCcEEEEe
Q 035621          187 CCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPT---------------ETDFFAAGSDGLIYKGL  250 (387)
Q Consensus       187 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~i~d  250 (387)
                      ...+  |.++++++.|.++++|-+.++++...+. |+.+|.+++|.|.               +.++.+++.|+.|++||
T Consensus       243 v~~D--Gti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd  320 (406)
T KOG0295|consen  243 VNQD--GTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD  320 (406)
T ss_pred             ecCC--eeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence            7665  5999999999999999999998877776 7788899998763               25899999999999999


Q ss_pred             ccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCC
Q 035621          251 LKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIG  329 (387)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  329 (387)
                      +.++         .+.-.+.+|...|..++|+|.|+||+++..|+++++||++++++...+..| ..-++++.|....+
T Consensus       321 v~tg---------~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah-~hfvt~lDfh~~~p  389 (406)
T KOG0295|consen  321 VSTG---------MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH-EHFVTSLDFHKTAP  389 (406)
T ss_pred             ccCC---------eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC-cceeEEEecCCCCc
Confidence            9983         333445689999999999999999999999999999999999999999866 44777776654443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.2e-37  Score=228.37  Aligned_cols=274  Identities=16%  Similarity=0.189  Sum_probs=236.4

Q ss_pred             eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEE
Q 035621           30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVY  108 (387)
Q Consensus        30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~  108 (387)
                      ....+..+.++|+++.|+.++.+..    +++.|.+|++|+...+.+++++. |...|..++.+.|+..+++|+.|..+.
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~l----tcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~   84 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCL----TCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQ   84 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEE----EcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEE
Confidence            4566788999999999999665554    49999999999999999999998 667899999999999999999999999


Q ss_pred             EEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEe
Q 035621          109 AISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC  188 (387)
Q Consensus       109 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  188 (387)
                      +||+++|+.++.+.+|.+.|+.++|+.+...+++|+.|.++++||.+.          ...++++.+......|.++.+.
T Consensus        85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS----------~s~ePiQildea~D~V~Si~v~  154 (307)
T KOG0316|consen   85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS----------RSFEPIQILDEAKDGVSSIDVA  154 (307)
T ss_pred             EEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc----------CCCCccchhhhhcCceeEEEec
Confidence            999999999999999999999999999999999999999999999976          5667888888888999999875


Q ss_pred             eCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEee
Q 035621          189 IGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL  268 (387)
Q Consensus       189 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  268 (387)
                      .    ..+++|+.||+++.||++.|+....+ ...+|++++|+++++..++++.|+.+++.|-.+++.....        
T Consensus       155 ~----heIvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY--------  221 (307)
T KOG0316|consen  155 E----HEIVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY--------  221 (307)
T ss_pred             c----cEEEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHh--------
Confidence            3    67999999999999999999765433 6789999999999999999999999999999886544333        


Q ss_pred             ccccccc--EEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCc
Q 035621          269 ANRHDGV--VVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGS  331 (387)
Q Consensus       269 ~~~~~~~--v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  331 (387)
                       .+|...  -..++++.....+++|++||.|++||+.+...+..+..+..-.++.+.+-+..+..
T Consensus       222 -kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f  285 (307)
T KOG0316|consen  222 -KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDF  285 (307)
T ss_pred             -cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccce
Confidence             355543  34567777778999999999999999999999999987765447777766655553

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-36  Score=231.09  Aligned_cols=286  Identities=15%  Similarity=0.200  Sum_probs=238.9

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      +.|+.+|.+|.+++.|.++.||-..+|+.+.++.+|.+.|+++..+.    ....+++|+.|.++++||+++|+++..++
T Consensus        16 iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~----~s~~liTGSAD~t~kLWDv~tGk~la~~k   91 (327)
T KOG0643|consen   16 IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW----DSKHLITGSADQTAKLWDVETGKQLATWK   91 (327)
T ss_pred             EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC----CcceeeeccccceeEEEEcCCCcEEEEee
Confidence            46888999999999999999999889999999999999999999988    45567779999999999999999999999


Q ss_pred             CCCCeeeEEeccCCCEEEEec-----CCCcEEEEeCC-------CCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 035621           82 VPEPVAPLATTADGSYLFTGG-----LSGNVYAISVP-------KGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVI  149 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~-----~dg~i~i~d~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  149 (387)
                      .+.+|..+.|+++|++++...     ..+.|.++|++       ..++...+..+...++.+-|.|-+++|++|.+||.|
T Consensus        92 ~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~i  171 (327)
T KOG0643|consen   92 TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSI  171 (327)
T ss_pred             cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcE
Confidence            999999999999999888765     34679999997       445677788888999999999999999999999999


Q ss_pred             EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEE
Q 035621          150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLA  229 (387)
Q Consensus       150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~  229 (387)
                      ..||+++           ....+..-..|...|+.+.++++.  .++++++.|.+-++||+++.+.++++....++++.+
T Consensus       172 s~~da~~-----------g~~~v~s~~~h~~~Ind~q~s~d~--T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa  238 (327)
T KOG0643|consen  172 SIYDART-----------GKELVDSDEEHSSKINDLQFSRDR--TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA  238 (327)
T ss_pred             EEEEccc-----------CceeeechhhhccccccccccCCc--ceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence            9999942           234556667899999999999885  999999999999999999999999999999999999


Q ss_pred             eCCCCCeEEEEccCCcEEEE--eccccccccc----cccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          230 LDPTETDFFAAGSDGLIYKG--LLKYQSRQQM----HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       230 ~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      ++|....++.|+.....-+=  +.+.+.....    .-..++. -.++|-++|++++|+|+|+..++|++||.|++..++
T Consensus       239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig-rvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG-RVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc-cccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence            99998888887653322221  1111100000    0011222 235899999999999999999999999999998766


Q ss_pred             Cc
Q 035621          304 KR  305 (387)
Q Consensus       304 ~~  305 (387)
                      ..
T Consensus       318 ~~  319 (327)
T KOG0643|consen  318 SN  319 (327)
T ss_pred             cc
Confidence            43

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.8e-36  Score=258.26  Aligned_cols=284  Identities=16%  Similarity=0.240  Sum_probs=241.8

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeecccc-CCCCCeEEEEEccCCCcccccC
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISP-TTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      +|++..++||+|-..|...+|++....+++.+.-...+|..++|+..+    .+++. ++.-|++-||++++...+...+
T Consensus       272 ~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG----DWiA~g~~klgQLlVweWqsEsYVlKQQ  347 (893)
T KOG0291|consen  272 AFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG----DWIAFGCSKLGQLLVWEWQSESYVLKQQ  347 (893)
T ss_pred             eccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC----CEEEEcCCccceEEEEEeeccceeeecc
Confidence            688889999999999999999999999999998888899999999733    33333 4455899999999887766555


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                       |-..+.+++++|||+++++|+.||.|++||..++-|+.++..|+..|+.+.|+..++.+++++-||+|+.||+      
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl------  421 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL------  421 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee------
Confidence             6789999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             CCCCCCCCccceEeeeccC-CCeEEEEEeeCCCCceEEEEeCCC-cEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeE
Q 035621          161 HTDDKNPDDLMLQKFVAHN-DSVTAITCCIGSFNSIIISCSMDC-TCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDF  237 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l  237 (387)
                            ......+++.... ....+++..|.  |.+++.|+.|. .|.+|++++|+.+-.+. |.++|.+++|+|++..|
T Consensus       422 ------kRYrNfRTft~P~p~QfscvavD~s--GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~L  493 (893)
T KOG0291|consen  422 ------KRYRNFRTFTSPEPIQFSCVAVDPS--GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLL  493 (893)
T ss_pred             ------cccceeeeecCCCceeeeEEEEcCC--CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeE
Confidence                  4555556654332 23446666555  58888888876 59999999999999887 88999999999999999


Q ss_pred             EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621          238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      ++++.|.+|++||+-...        ...+.+ .+...+..++|+|+|+-|++++.||.|.+||.+.+..+..+.+
T Consensus       494 aS~SWDkTVRiW~if~s~--------~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg  560 (893)
T KOG0291|consen  494 ASGSWDKTVRIWDIFSSS--------GTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG  560 (893)
T ss_pred             EeccccceEEEEEeeccC--------ceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence            999999999999997632        112222 4677899999999999999999999999999999888766654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6.5e-36  Score=284.77  Aligned_cols=282  Identities=17%  Similarity=0.217  Sum_probs=225.1

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCC----c----eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSG----A----ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS   73 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~----~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~   73 (387)
                      ++|+|+|++||+|+.|+.|+|||..+.    .    ....+. +...+.+++|++.   ....+++++.||+|++||+.+
T Consensus       489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~---~~~~las~~~Dg~v~lWd~~~  564 (793)
T PLN00181        489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSY---IKSQVASSNFEGVVQVWDVAR  564 (793)
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccC---CCCEEEEEeCCCeEEEEECCC
Confidence            579999999999999999999997532    1    122333 3457899999873   123456689999999999998


Q ss_pred             CCcccccC-CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEc-CCCCEEEEEeCCCcEE
Q 035621           74 STPLHNIP-VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKIS-PDGSLLISGGDDGVIA  150 (387)
Q Consensus        74 ~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~  150 (387)
                      ++.+..+. |...|.+++|+| ++.+|++|+.||.|++||+++++.+..+..+ ..+.++.|+ +++.+|++|+.||.|+
T Consensus       565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~  643 (793)
T PLN00181        565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVY  643 (793)
T ss_pred             CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEE
Confidence            88777765 778899999997 7899999999999999999999988888754 679999995 5789999999999999


Q ss_pred             EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC------cEEEEEe-cCC
Q 035621          151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG------THLSTVT-FPC  223 (387)
Q Consensus       151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~-~~~  223 (387)
                      +||++.           .......+.+|...|.++.|.+   +.+|++++.|++|++||++.+      .++..+. |..
T Consensus       644 iwD~~~-----------~~~~~~~~~~h~~~V~~v~f~~---~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~  709 (793)
T PLN00181        644 YYDLRN-----------PKLPLCTMIGHSKTVSYVRFVD---SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN  709 (793)
T ss_pred             EEECCC-----------CCccceEecCCCCCEEEEEEeC---CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC
Confidence            999942           1224566778999999999963   378999999999999999753      4566665 667


Q ss_pred             ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc---ccee-EeecccccccEEEEEEecCCCEEEEEeCCCcEEE
Q 035621          224 AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK---GQEL-VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYI  299 (387)
Q Consensus       224 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  299 (387)
                      .+.+++|+|++.+|++|+.|+.|++|+...........   .... ......|...|.+++|+|++..|++|+.||.|+|
T Consensus       710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i  789 (793)
T PLN00181        710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKI  789 (793)
T ss_pred             CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence            88999999999999999999999999976532211100   0000 0012345678999999999999999999999999


Q ss_pred             EEC
Q 035621          300 WEI  302 (387)
Q Consensus       300 wd~  302 (387)
                      |++
T Consensus       790 ~~~  792 (793)
T PLN00181        790 LEM  792 (793)
T ss_pred             Eec
Confidence            986

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.8e-36  Score=246.65  Aligned_cols=306  Identities=29%  Similarity=0.487  Sum_probs=251.6

Q ss_pred             EeeCCCC-cEEEEeCCCCceeEeccCC-CCCceeEE-EcCccceeeeccccCCCCCeEEEEEccCCCccc-ccCCCCCee
Q 035621           12 LTSSPEG-PITAYNPSSGAILAHFSGS-RSPRRGLT-FAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NIPVPEPVA   87 (387)
Q Consensus        12 ~~~~~dg-~i~iwd~~~~~~~~~~~~~-~~~v~~~~-~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~~~~~v~   87 (387)
                      .+++.|. ++.+||+.||....++++. ...-.++. ..+...+.+     ......+.+|.+....... .+..++++.
T Consensus        11 sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsa-----q~~rp~l~vw~i~k~~~~~q~~v~Pg~v~   85 (476)
T KOG0646|consen   11 SSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSA-----QLKRPLLHVWEILKKDQVVQYIVLPGPVH   85 (476)
T ss_pred             eccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeee-----cccCccccccccCchhhhhhhccccccee
Confidence            3444444 4999999999999888765 32222332 222222222     2345589999997765554 455789999


Q ss_pred             eEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621           88 PLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP  167 (387)
Q Consensus        88 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  167 (387)
                      +++-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|-..|+|+.|+.|+.+|++|+.||.|.+|.+.........   .
T Consensus        86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~---~  162 (476)
T KOG0646|consen   86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND---H  162 (476)
T ss_pred             eeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC---C
Confidence            9999999999999999999999999999999999999999999999999999999999999999998665444322   2


Q ss_pred             CccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEE
Q 035621          168 DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY  247 (387)
Q Consensus       168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  247 (387)
                      ...+...+..|.-+|+++...+.+...+++|+|.|.++++||+..+..+.++..+..+.+++.+|.+..+++|+.+|.|.
T Consensus       163 ~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~  242 (476)
T KOG0646|consen  163 SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIF  242 (476)
T ss_pred             CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEE
Confidence            66788999999999999999988777899999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccccccccc-------cccceeEeecccccc--cEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCC
Q 035621          248 KGLLKYQSRQQM-------HKGQELVTLANRHDG--VVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGS  318 (387)
Q Consensus       248 i~d~~~~~~~~~-------~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  318 (387)
                      +.++........       .........+.+|.+  .|+|++.+-||..|++|+.||.|+|||+.+.++++++.. ..++
T Consensus       243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~-~kgp  321 (476)
T KOG0646|consen  243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT-SKGP  321 (476)
T ss_pred             eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh-hccc
Confidence            998876542211       112233344568888  999999999999999999999999999999999999874 5679


Q ss_pred             ceeEEEEe
Q 035621          319 ISEMVIAT  326 (387)
Q Consensus       319 v~~~~~~~  326 (387)
                      |+.+.+.+
T Consensus       322 VtnL~i~~  329 (476)
T KOG0646|consen  322 VTNLQINP  329 (476)
T ss_pred             cceeEeec
Confidence            99998844

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-36  Score=257.14  Aligned_cols=266  Identities=18%  Similarity=0.224  Sum_probs=237.5

Q ss_pred             EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC-CCCeeeEEeccCCCEEEEecCCCcEEEE
Q 035621           32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV-PEPVAPLATTADGSYLFTGGLSGNVYAI  110 (387)
Q Consensus        32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~  110 (387)
                      +.+..++..|.++.++|    ...++.++-.+|.|.|||.++...++.+.. ..||.+..|-+..+++++|+.|..|++|
T Consensus         7 rk~~~rSdRVKsVd~HP----tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf   82 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHP----TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF   82 (794)
T ss_pred             hHhhccCCceeeeecCC----CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence            45566889999999999    333444467899999999999999999985 4689999999999999999999999999


Q ss_pred             eCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeC
Q 035621          111 SVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIG  190 (387)
Q Consensus       111 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  190 (387)
                      +..+++.++.|.+|...|++++.+|...++++++.|-.|++||..+           ...+.+.+.+|...|++++|.|.
T Consensus        83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~-----------~wa~~qtfeGH~HyVMqv~fnPk  151 (794)
T KOG0276|consen   83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-----------EWACEQTFEGHEHYVMQVAFNPK  151 (794)
T ss_pred             ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC-----------ceeeeeEEcCcceEEEEEEecCC
Confidence            9999999999999999999999999999999999999999999853           55678899999999999999998


Q ss_pred             CCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCC--CeEEEEccCCcEEEEeccccccccccccceeEe
Q 035621          191 SFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTE--TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVT  267 (387)
Q Consensus       191 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  267 (387)
                      . .+.+++++.|++|++|.+.+..+..+++ |...|+++.+-+.|  .+|++|+.|..|++||.++         +.+.+
T Consensus       152 D-~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt---------k~CV~  221 (794)
T KOG0276|consen  152 D-PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT---------KSCVQ  221 (794)
T ss_pred             C-ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch---------HHHHH
Confidence            4 6899999999999999999999998888 78899999999865  7999999999999999998         34455


Q ss_pred             ecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEE
Q 035621          268 LANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMV  323 (387)
Q Consensus       268 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  323 (387)
                      .+.+|...|..+.|+|.-..+++|++||++|||+..+-++...+.-... .++++.
T Consensus       222 TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle-RvW~I~  276 (794)
T KOG0276|consen  222 TLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE-RVWCIA  276 (794)
T ss_pred             HhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc-eEEEEe
Confidence            5679999999999999999999999999999999999988887765543 777775

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.1e-37  Score=249.08  Aligned_cols=274  Identities=18%  Similarity=0.230  Sum_probs=228.8

Q ss_pred             CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC
Q 035621           37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG  115 (387)
Q Consensus        37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  115 (387)
                      -..+|..+.|.|+    +..|++|+..|.+.+|+...-.....+ .|..+|.++.|+++|.++++|+.+|.|++|+....
T Consensus        95 vkc~V~~v~WtPe----GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn  170 (464)
T KOG0284|consen   95 VKCPVNVVRWTPE----GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN  170 (464)
T ss_pred             cccceeeEEEcCC----CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence            3456999999994    445566999999999998544333333 38899999999999999999999999999997544


Q ss_pred             ceeEEccCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCc
Q 035621          116 DILRSFSAH-DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS  194 (387)
Q Consensus       116 ~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  194 (387)
                      . ++.+.+| ...|++++|+|+...+++++.||+|+|||.            ...+.-..+.+|.-.|.+++|+|..  .
T Consensus       171 n-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf------------~~~kee~vL~GHgwdVksvdWHP~k--g  235 (464)
T KOG0284|consen  171 N-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF------------RMPKEERVLRGHGWDVKSVDWHPTK--G  235 (464)
T ss_pred             h-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec------------cCCchhheeccCCCCcceeccCCcc--c
Confidence            4 4455554 489999999999999999999999999999            3444556678999999999999996  8


Q ss_pred             eEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeeccccc
Q 035621          195 IIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHD  273 (387)
Q Consensus       195 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  273 (387)
                      ++++++.|..|++||.++++++.++. |...|..+.|+|++++|++++.|..++++|+++..        ++ ..+++|.
T Consensus       236 LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk--------El-~~~r~Hk  306 (464)
T KOG0284|consen  236 LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK--------EL-FTYRGHK  306 (464)
T ss_pred             eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH--------HH-HHhhcch
Confidence            99999999999999999999999887 78899999999999999999999999999999632        22 2235899


Q ss_pred             ccEEEEEEecC-CCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeE-------EEEecCCCc-eeeEEEe
Q 035621          274 GVVVSVMMMNE-GKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEM-------VIATGIGGS-RGCGVVK  338 (387)
Q Consensus       274 ~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-------~~~~~~~~~-~~~~~~~  338 (387)
                      ..|+++.|+|- ..+|.+|+.||.|..|.+...+++..+...+.+.|++|       .+++++.+. +..|.-.
T Consensus       307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             hhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            99999999995 45888999999999999998899999988888999988       445555443 4666544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.6e-37  Score=246.33  Aligned_cols=274  Identities=15%  Similarity=0.163  Sum_probs=226.1

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCC---ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSG---AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      +.||++|++||+++.|.+..||++...   +...++.+|..+|..+.|+|+..+    +++++.+..+.+||+.+|....
T Consensus       230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdry----LlaCg~~e~~~lwDv~tgd~~~  305 (519)
T KOG0293|consen  230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRY----LLACGFDEVLSLWDVDTGDLRH  305 (519)
T ss_pred             EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCe----EEecCchHheeeccCCcchhhh
Confidence            679999999999999999999998644   447888999999999999995444    4458999999999999999999


Q ss_pred             ccCCC--CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621           79 NIPVP--EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHD-KPVSCLKISPDGSLLISGGDDGVIATVPIF  155 (387)
Q Consensus        79 ~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  155 (387)
                      .+++.  ..+.+++|.|||..+++|+.|+.+..||+. |+....+++-. ..|.+++..+||+++++.+.|..|++++..
T Consensus       306 ~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e  384 (519)
T KOG0293|consen  306 LYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE  384 (519)
T ss_pred             hcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechh
Confidence            88865  789999999999999999999999999984 55555555433 569999999999999999999999999883


Q ss_pred             cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCC
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDP  232 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~  232 (387)
                      .            .... .+.....+|++++.+.++  .++++.-.+..+++||++....++.+..   ...+..-||--
T Consensus       385 ~------------~~dr-~lise~~~its~~iS~d~--k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg  449 (519)
T KOG0293|consen  385 A------------RVDR-GLISEEQPITSFSISKDG--KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG  449 (519)
T ss_pred             h------------hhhh-ccccccCceeEEEEcCCC--cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence            2            2121 133455789999888774  8888888999999999998877777652   23455556654


Q ss_pred             -CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCCCcEEEEECCC
Q 035621          233 -TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       233 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~  304 (387)
                       +..++++|+.|+.|++|+..+         ..+...+.+|...|++++|+|.. .++|+++.||+||||....
T Consensus       450 ~~~~fiaSGSED~kvyIWhr~s---------gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  450 GNDKFIASGSEDSKVYIWHRIS---------GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CCcceEEecCCCceEEEEEccC---------CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence             458999999999999999987         34455567999999999999954 5899999999999998764

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.5e-37  Score=240.74  Aligned_cols=272  Identities=17%  Similarity=0.275  Sum_probs=238.7

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEecc--------CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFS--------GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS   74 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~   74 (387)
                      .|||||++|++|+.||-|.+||..+|+....++        -+..+|.|+.|+.+    ...+++|+.||.|++|.+++|
T Consensus       220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD----sEMlAsGsqDGkIKvWri~tG  295 (508)
T KOG0275|consen  220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD----SEMLASGSQDGKIKVWRIETG  295 (508)
T ss_pred             eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc----HHHhhccCcCCcEEEEEEecc
Confidence            599999999999999999999999998765543        36788999999994    445666999999999999999


Q ss_pred             CcccccC--CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621           75 TPLHNIP--VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATV  152 (387)
Q Consensus        75 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  152 (387)
                      .+++.+.  |...|+|+.|+.|+..+++++.|.++++.-+++|++++.+++|...|+...|.++|..+++++.||+|++|
T Consensus       296 ~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW  375 (508)
T KOG0275|consen  296 QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVW  375 (508)
T ss_pred             hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEe
Confidence            9999987  77899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCcccccCCCCCCCCccceEeeec--cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCcee
Q 035621          153 PIFQLVDEHTDDKNPDDLMLQKFVA--HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIM  226 (387)
Q Consensus       153 d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~  226 (387)
                      +.            .+..++.+++.  ...+|+++...|.. ...++.|....++.|.++ .|+.++++.    ..+...
T Consensus       376 ~~------------KtteC~~Tfk~~~~d~~vnsv~~~PKn-peh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi  441 (508)
T KOG0275|consen  376 HG------------KTTECLSTFKPLGTDYPVNSVILLPKN-PEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFI  441 (508)
T ss_pred             cC------------cchhhhhhccCCCCcccceeEEEcCCC-CceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceE
Confidence            98            55666666654  44578888888875 577888889999999997 477888886    345678


Q ss_pred             EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      +.+.+|.|.++++.+.|+.++.|...++.         +...+..|...|..++-+|..+.||+-++||.+++|.
T Consensus       442 ~~~lSpkGewiYcigED~vlYCF~~~sG~---------LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  442 NAILSPKGEWIYCIGEDGVLYCFSVLSGK---------LERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEecCCCcEEEEEccCcEEEEEEeecCc---------eeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            88999999999999999999999988743         3334457899999999999999999999999999995

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.6e-36  Score=261.77  Aligned_cols=286  Identities=15%  Similarity=0.213  Sum_probs=238.1

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|+|....++++-..|.|++||..-+.++..|..|.++|+.++|+|...    .+++|+.|-.|++|+..+.+++.++.
T Consensus        15 lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qp----lFVSGGDDykIkVWnYk~rrclftL~   90 (1202)
T KOG0292|consen   15 LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQP----LFVSGGDDYKIKVWNYKTRRCLFTLL   90 (1202)
T ss_pred             eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCC----eEEecCCccEEEEEecccceehhhhc
Confidence            68999999999999999999999999999999999999999999999544    44559999999999999999988776


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                       |-+-|..+.|++.-.++++++.|.+|+||+..+++++..+.+|...|.|.+|+|....++++|-|.+|++||+..+...
T Consensus        91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk  170 (1202)
T KOG0292|consen   91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKK  170 (1202)
T ss_pred             cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhcc
Confidence             6688999999999999999999999999999999999999999999999999999999999999999999999654333


Q ss_pred             CCCCC-----------------CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE--EE-e
Q 035621          161 HTDDK-----------------NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS--TV-T  220 (387)
Q Consensus       161 ~~~~~-----------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~-~  220 (387)
                      ...+.                 .......+.+.+|...|+-++|+|.-  .++++|+.|+.|++|.+...+.-.  +. .
T Consensus       171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl--pliVSG~DDRqVKlWrmnetKaWEvDtcrg  248 (1202)
T KOG0292|consen  171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL--PLIVSGADDRQVKLWRMNETKAWEVDTCRG  248 (1202)
T ss_pred             CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc--ceEEecCCcceeeEEEeccccceeehhhhc
Confidence            22221                 01122345578999999999999986  899999999999999987655322  22 2


Q ss_pred             cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEE
Q 035621          221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIW  300 (387)
Q Consensus       221 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw  300 (387)
                      |.+.|.++-|+|..+.+++.+.|+.|++||+..-..         ...+......-+.++-+|..+++++| .|+-+.+|
T Consensus       249 H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~---------v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VF  318 (1202)
T KOG0292|consen  249 HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS---------VQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVF  318 (1202)
T ss_pred             ccCCcceEEecCccceeEecCCCccEEEEecccccc---------eeeeeccCCeEEEEEecCCcceeeee-cCCceEEE
Confidence            778999999999999999999999999999987322         22223345667778888877776665 44456666


Q ss_pred             ECC
Q 035621          301 EIE  303 (387)
Q Consensus       301 d~~  303 (387)
                      .++
T Consensus       319 kle  321 (1202)
T KOG0292|consen  319 KLE  321 (1202)
T ss_pred             EEc
Confidence            655

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.9e-34  Score=220.22  Aligned_cols=270  Identities=15%  Similarity=0.205  Sum_probs=221.6

Q ss_pred             ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC---cccccC--CCCCeeeEEeccCCCEEEEecC
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST---PLHNIP--VPEPVAPLATTADGSYLFTGGL  103 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~---~~~~~~--~~~~v~~~~~~~~~~~l~~~~~  103 (387)
                      ..++.+++|.+.+..++|+|..   +..+++++.|..|++|+...+.   +...+.  |...|..++|+|.|++|++++.
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~---g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF   81 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGK---GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF   81 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCC---ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence            3467789999999999999951   2345569999999999987533   222222  7789999999999999999999


Q ss_pred             CCcEEEEeCCCC--ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC
Q 035621          104 SGNVYAISVPKG--DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS  181 (387)
Q Consensus       104 dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (387)
                      |.++.||.-..+  +++..+++|...|.|++|+++|++|++++.|++|-+|.+...         ....+...++.|...
T Consensus        82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded---------dEfec~aVL~~HtqD  152 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED---------DEFECIAVLQEHTQD  152 (312)
T ss_pred             cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC---------CcEEEEeeecccccc
Confidence            999999987654  678889999999999999999999999999999999988421         355678889999999


Q ss_pred             eEEEEEeeCCCCceEEEEeCCCcEEEEeCC---CCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621          182 VTAITCCIGSFNSIIISCSMDCTCKFWRLL---NGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ  257 (387)
Q Consensus       182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  257 (387)
                      |..+.|+|..  .+|++++.|.+|++|+-.   ...+..++. +...|.+++|++.|..|++++.|+.++||...+.   
T Consensus       153 VK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---  227 (312)
T KOG0645|consen  153 VKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---  227 (312)
T ss_pred             ccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---
Confidence            9999999986  899999999999999876   335777777 6679999999999999999999999999986531   


Q ss_pred             cccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc------cEEEEeecccCCCceeEEEEec
Q 035621          258 QMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR------QVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                                +..-|...+..+.|.  ...|++++.|+.|++|.-...      +++......+.-.|+++.+.++
T Consensus       228 ----------~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~  291 (312)
T KOG0645|consen  228 ----------LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK  291 (312)
T ss_pred             ----------cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC
Confidence                      122588899999998  458999999999999986643      2333333344457888877763

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.8e-36  Score=260.39  Aligned_cols=224  Identities=20%  Similarity=0.257  Sum_probs=204.6

Q ss_pred             eeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEe
Q 035621           13 TSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLAT   91 (387)
Q Consensus        13 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~   91 (387)
                      +.+.|-.+...|-.+.....++.+|.++|....|+|+..++    ++++.|+++++|.+.+...+-.++ |..||.++.|
T Consensus       426 ~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfL----lScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F  501 (707)
T KOG0263|consen  426 TESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFL----LSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQF  501 (707)
T ss_pred             ccccchhhhhccccCCceeEEeecCCCceeeeeecccccce----eeccCCcceeeeecccceeEEEecCCCcceeeEEe
Confidence            44555557777877777788899999999999999965544    459999999999999998877777 6689999999


Q ss_pred             ccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccc
Q 035621           92 TADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLM  171 (387)
Q Consensus        92 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  171 (387)
                      +|.|-++|+++.|++.++|......+.+.+.+|.+.|.|+.|+|+..++++|+.|.++++||+            .++..
T Consensus       502 ~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv------------~~G~~  569 (707)
T KOG0263|consen  502 APRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDV------------STGNS  569 (707)
T ss_pred             cCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEc------------CCCcE
Confidence            999999999999999999999999999999999999999999999999999999999999999            67888


Q ss_pred             eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEe
Q 035621          172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGL  250 (387)
Q Consensus       172 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  250 (387)
                      ++.|.+|.++|.+++|+|.+  .+|++|+.||.|.+||+.+++.+..+. |.+.|.++.|+.+|..|++|+.|..|++||
T Consensus       570 VRiF~GH~~~V~al~~Sp~G--r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD  647 (707)
T KOG0263|consen  570 VRIFTGHKGPVTALAFSPCG--RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD  647 (707)
T ss_pred             EEEecCCCCceEEEEEcCCC--ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence            99999999999999999975  999999999999999999999887776 788999999999999999999999999999


Q ss_pred             cccc
Q 035621          251 LKYQ  254 (387)
Q Consensus       251 ~~~~  254 (387)
                      +...
T Consensus       648 ~~~~  651 (707)
T KOG0263|consen  648 LTKV  651 (707)
T ss_pred             chhh
Confidence            9763

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-35  Score=219.31  Aligned_cols=268  Identities=15%  Similarity=0.243  Sum_probs=225.5

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      +.|+-||++.++++.|.+|++||+..|.+++++.+|...|..++.+.    ..+.+++++.|..+.+||+++|+..+.+.
T Consensus        23 vryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~----Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r   98 (307)
T KOG0316|consen   23 VRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS----DNSKFASCGGDKAVQVWDVNTGKVDRRFR   98 (307)
T ss_pred             EEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc----cccccccCCCCceEEEEEcccCeeeeecc
Confidence            56889999999999999999999999999999999999999999887    44567779999999999999999999988


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC--ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG--DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                       |...|+.+.|+.+...+++|+.|..+++||.++.  ++++.+......|.++..+  +..+++|+.||+++.||++   
T Consensus        99 gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR---  173 (307)
T KOG0316|consen   99 GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIR---  173 (307)
T ss_pred             cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEee---
Confidence             6789999999999999999999999999999765  6788888888899999985  5679999999999999994   


Q ss_pred             ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cC--CceeEEEeCCCCC
Q 035621          159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FP--CAIMGLALDPTET  235 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~--~~v~~~~~~~~~~  235 (387)
                               .+......  -..+|++++|++++  +..+.++.|+++++.|-.+|+.+..+. |.  ..-..++++....
T Consensus       174 ---------~G~l~sDy--~g~pit~vs~s~d~--nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt  240 (307)
T KOG0316|consen  174 ---------KGTLSSDY--FGHPITSVSFSKDG--NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT  240 (307)
T ss_pred             ---------cceeehhh--cCCcceeEEecCCC--CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence                     33333333  34689999999986  889999999999999999999998887 33  2345678888889


Q ss_pred             eEEEEccCCcEEEEeccccccccccccceeEeeccccccc-EEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGV-VVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      .+++|++||.+++||+...        ..+.. +..+... |.++.++|.-..|+++. ++.+..|-
T Consensus       241 hV~sgSEDG~Vy~wdLvd~--------~~~sk-~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~  297 (307)
T KOG0316|consen  241 HVFSGSEDGKVYFWDLVDE--------TQISK-LSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY  297 (307)
T ss_pred             eEEeccCCceEEEEEeccc--------eeeee-eccCCceeEEeeecccCccceeEec-CCceecee
Confidence            9999999999999999873        22222 3345555 89999999887777775 34566664

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2e-34  Score=255.98  Aligned_cols=265  Identities=22%  Similarity=0.390  Sum_probs=222.4

Q ss_pred             eccCC-CCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--ccccc-CCCCCeeeEEeccCCCEEEEecCCCcEE
Q 035621           33 HFSGS-RSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PLHNI-PVPEPVAPLATTADGSYLFTGGLSGNVY  108 (387)
Q Consensus        33 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~  108 (387)
                      .+..| ...|.++.|++++...+    +++.++.+++|+....+  ....+ .|...|.+++|+|+++++++++.|++|+
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~----~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir  228 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALA----AASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR  228 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEE----EccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEE
Confidence            34343 67799999999665544    48999999999997776  55554 4778899999999999999999999999


Q ss_pred             EEeC-CCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621          109 AISV-PKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC  187 (387)
Q Consensus       109 i~d~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  187 (387)
                      +||+ ..+..++++++|...|++++|+|+++++++|+.|++|++||+            ....+...+.+|.+.|++++|
T Consensus       229 iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~------------~~~~~~~~l~~hs~~is~~~f  296 (456)
T KOG0266|consen  229 IWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV------------RTGECVRKLKGHSDGISGLAF  296 (456)
T ss_pred             EeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEec------------cCCeEEEeeeccCCceEEEEE
Confidence            9999 555889999999999999999999999999999999999999            668899999999999999999


Q ss_pred             eeCCCCceEEEEeCCCcEEEEeCCCCc--EEEEEe-cCC--ceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccc
Q 035621          188 CIGSFNSIIISCSMDCTCKFWRLLNGT--HLSTVT-FPC--AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG  262 (387)
Q Consensus       188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~-~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  262 (387)
                      .+++  ++|++++.|+.|++||+.++.  +...+. ...  .+++++|+|++.++++++.|+.+++||+......     
T Consensus       297 ~~d~--~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-----  369 (456)
T KOG0266|consen  297 SPDG--NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-----  369 (456)
T ss_pred             CCCC--CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce-----
Confidence            9885  999999999999999999999  455554 222  6899999999999999999999999999974322     


Q ss_pred             ceeEeecccccc---cEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEE
Q 035621          263 QELVTLANRHDG---VVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVI  324 (387)
Q Consensus       263 ~~~~~~~~~~~~---~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  324 (387)
                         .. ..+|..   .+.+...++.+.++++|+.|+.|++||+.++..+..+.+|....+..+.+
T Consensus       370 ---~~-~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~  430 (456)
T KOG0266|consen  370 ---GT-YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSS  430 (456)
T ss_pred             ---ee-ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecccc
Confidence               22 224444   34455567899999999999999999999999999999884435544433

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7.9e-35  Score=225.47  Aligned_cols=275  Identities=20%  Similarity=0.288  Sum_probs=226.5

Q ss_pred             eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC-Cccccc-CCCCCeeeEEeccCCCEEEEecCCCcEE
Q 035621           31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-TPLHNI-PVPEPVAPLATTADGSYLFTGGLSGNVY  108 (387)
Q Consensus        31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~  108 (387)
                      +..+.+|.+.|+.+.|+|+    .+.+++++.|..|.+|++... +-...+ .|.+.|..+.|.+|++.+++++.|.+++
T Consensus        40 ~m~l~gh~geI~~~~F~P~----gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~  115 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPD----GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR  115 (338)
T ss_pred             hhhcCCCcceEEEEEECCC----CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence            4456899999999999994    455666999999999996332 233333 3788999999999999999999999999


Q ss_pred             EEeCCCCceeEEccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621          109 AISVPKGDILRSFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC  187 (387)
Q Consensus       109 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  187 (387)
                      .||+++|+.++.+++|..-|+++.-+.-| .++.+++.||++++||++            ....++.+. ....++++.|
T Consensus       116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R------------~k~~~~t~~-~kyqltAv~f  182 (338)
T KOG0265|consen  116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR------------KKEAIKTFE-NKYQLTAVGF  182 (338)
T ss_pred             EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec------------ccchhhccc-cceeEEEEEe
Confidence            99999999999999999999999855434 477788999999999994            333444432 3456888888


Q ss_pred             eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeE
Q 035621          188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELV  266 (387)
Q Consensus       188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  266 (387)
                      ...+  ..+.+|+-|+.|++||++....+..+. |..+|+.+..+|+|.++.+-+.|..+++||++....     .+..+
T Consensus       183 ~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p-----~~R~v  255 (338)
T KOG0265|consen  183 KDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP-----SQRCV  255 (338)
T ss_pred             cccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC-----CCceE
Confidence            7775  789999999999999999999999888 788999999999999999999999999999987432     22323


Q ss_pred             eeccccc----ccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCC
Q 035621          267 TLANRHD----GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGG  330 (387)
Q Consensus       267 ~~~~~~~----~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  330 (387)
                      ..+.+|.    .....++|+|++..+..|+.|..+++||......+..+++| .+.|.++.|-+-.+-
T Consensus       256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh-~gsvn~~~Fhp~e~i  322 (338)
T KOG0265|consen  256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH-YGSVNEVDFHPTEPI  322 (338)
T ss_pred             EEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc-ceeEEEeeecCCCcE
Confidence            3333332    23567799999999999999999999999999999999998 469999988775543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.5e-35  Score=247.80  Aligned_cols=275  Identities=21%  Similarity=0.299  Sum_probs=238.2

Q ss_pred             CccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            1 LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++.|+ ..+.||+|.. ..|++|+..++........+...|+++.|++++.    .|+.|..+|.|.|||..+.+.+..+
T Consensus       182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~----~LavG~~~g~v~iwD~~~~k~~~~~  255 (484)
T KOG0305|consen  182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGS----HLAVGTSDGTVQIWDVKEQKKTRTL  255 (484)
T ss_pred             Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCC----EEEEeecCCeEEEEehhhccccccc
Confidence            46788 4456777654 5799999999987666665688899999999554    4455999999999999988888777


Q ss_pred             CC--CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE-ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621           81 PV--PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS-FSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL  157 (387)
Q Consensus        81 ~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  157 (387)
                      ..  ...|-+++|.  +..+.+|+.++.|..+|++..+.... +.+|...|..+.|++|++++++|+.|+.+.|||.   
T Consensus       256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~---  330 (484)
T KOG0305|consen  256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG---  330 (484)
T ss_pred             cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC---
Confidence            64  6789999998  57899999999999999998876655 8899999999999999999999999999999999   


Q ss_pred             cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe--CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCC
Q 035621          158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS--MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTET  235 (387)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  235 (387)
                               ....+...+..|...|.+++|+|.. ..+||+|+  .|+.|++||..++..+..+.....|.++.|++..+
T Consensus       331 ---------~~~~p~~~~~~H~aAVKA~awcP~q-~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~k  400 (484)
T KOG0305|consen  331 ---------LSPEPKFTFTEHTAAVKALAWCPWQ-SGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYK  400 (484)
T ss_pred             ---------CCccccEEEeccceeeeEeeeCCCc-cCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCC
Confidence                     5667888999999999999999986 57888876  49999999999999999999999999999999998


Q ss_pred             eEEEEc--cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621          236 DFFAAG--SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       236 ~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  305 (387)
                      .|+++.  .++.|.||+..+         ......+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus       401 Ei~sthG~s~n~i~lw~~ps---------~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  401 ELLSTHGYSENQITLWKYPS---------MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEEecCCCCCcEEEEeccc---------cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            888753  478999999987         2333445689999999999999999999999999999998875

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=8.7e-36  Score=244.79  Aligned_cols=279  Identities=20%  Similarity=0.255  Sum_probs=237.7

Q ss_pred             ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CCcccccC-CCCCeeeEEeccCCCEEEEecCCCc
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-STPLHNIP-VPEPVAPLATTADGSYLFTGGLSGN  106 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~  106 (387)
                      +.+..+.+|+..|.++.|.|.   .+.++++++.|+.|+||++.. +++++++. |..+|..++|+++|..+++++.|+.
T Consensus       205 k~~~~~~gH~kgvsai~~fp~---~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPK---KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF  281 (503)
T ss_pred             hheeeccCCccccchhhhccc---eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence            456788999999999999993   334455699999999999976 78888888 6689999999999999999999999


Q ss_pred             EEEEeCCCCceeEEccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEE
Q 035621          107 VYAISVPKGDILRSFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAI  185 (387)
Q Consensus       107 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  185 (387)
                      |++||.++|+++..+.. ...++|+.|+|++ +.+++|+.|+.|+.||+            +.+..++.+..|-+.|..+
T Consensus       282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi------------Rs~kvvqeYd~hLg~i~~i  348 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI------------RSGKVVQEYDRHLGAILDI  348 (503)
T ss_pred             eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEec------------cchHHHHHHHhhhhheeee
Confidence            99999999999999863 5678999999988 89999999999999999            5777889999999999999


Q ss_pred             EEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccc
Q 035621          186 TCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ  263 (387)
Q Consensus       186 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  263 (387)
                      .|.+.+  ..+++.+.|++++||+.+...++..+.  ......++..+|+++++++-+.|+.|.++.+...-+...    
T Consensus       349 ~F~~~g--~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk----  422 (503)
T KOG0282|consen  349 TFVDEG--RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK----  422 (503)
T ss_pred             EEccCC--ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCH----
Confidence            999885  999999999999999999888776665  345677899999999999999999999998765322211    


Q ss_pred             eeEeeccccc--ccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCce
Q 035621          264 ELVTLANRHD--GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSR  332 (387)
Q Consensus       264 ~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  332 (387)
                        ...+.+|.  +.-..+.|||||++|++|+.||.+.+||.++-+++..++.| ++++..+.+-+.....+
T Consensus       423 --kK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e~Skv  490 (503)
T KOG0282|consen  423 --KKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQPCIGVDWHPVEPSKV  490 (503)
T ss_pred             --hhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-CcceEEEEecCCCccee
Confidence              11233554  45678899999999999999999999999999999999988 55788887766655543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.7e-35  Score=256.33  Aligned_cols=283  Identities=18%  Similarity=0.219  Sum_probs=241.9

Q ss_pred             eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEe
Q 035621           33 HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAIS  111 (387)
Q Consensus        33 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  111 (387)
                      .+...+..|.+++|+|..    .++.++-..|.|++||.+-+.++..+. |.++|..++|+|++.++++|+.|-.|++|+
T Consensus         4 kfEskSsRvKglsFHP~r----PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKR----PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hhhcccccccceecCCCC----CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEe
Confidence            345566779999999944    344457789999999999999998887 889999999999999999999999999999


Q ss_pred             CCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC
Q 035621          112 VPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS  191 (387)
Q Consensus       112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  191 (387)
                      ..+.+++.++.+|...|+.+.|++.-.+++++|.|.+|+||+.            .+..++..+.+|...|+|..|+|..
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw------------qsr~~iavltGHnHYVMcAqFhptE  147 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW------------QSRKCIAVLTGHNHYVMCAQFHPTE  147 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEec------------cCCceEEEEecCceEEEeeccCCcc
Confidence            9999999999999999999999999999999999999999999            7888999999999999999999985


Q ss_pred             CCceEEEEeCCCcEEEEeCCCCc---------------------------EE--EEEe-cCCceeEEEeCCCCCeEEEEc
Q 035621          192 FNSIIISCSMDCTCKFWRLLNGT---------------------------HL--STVT-FPCAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       192 ~~~~l~s~~~d~~i~iwd~~~~~---------------------------~~--~~~~-~~~~v~~~~~~~~~~~l~~~~  241 (387)
                        .+++++|-|.+||+||+...+                           .+  ..+. |...|+-++|+|.-..+++|+
T Consensus       148 --DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~  225 (1202)
T KOG0292|consen  148 --DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA  225 (1202)
T ss_pred             --ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence              899999999999999985211                           01  1112 667899999999999999999


Q ss_pred             cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCce-
Q 035621          242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSIS-  320 (387)
Q Consensus       242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-  320 (387)
                      .|..|++|.++.....      +. ....+|.+.|.++-|+|...++++.++|++|+|||+..++.+++++..++ .-+ 
T Consensus       226 DDRqVKlWrmnetKaW------Ev-DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend-RFW~  297 (1202)
T KOG0292|consen  226 DDRQVKLWRMNETKAW------EV-DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND-RFWI  297 (1202)
T ss_pred             CcceeeEEEeccccce------ee-hhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC-eEEE
Confidence            9999999998763322      22 22458999999999999999999999999999999999999999975433 333 


Q ss_pred             ------eEEEEecCCCceeeEEEecCC
Q 035621          321 ------EMVIATGIGGSRGCGVVKTGK  341 (387)
Q Consensus       321 ------~~~~~~~~~~~~~~~~~~~~~  341 (387)
                            --.|+.|++.+..+.-.+..+
T Consensus       298 laahP~lNLfAAgHDsGm~VFkleREr  324 (1202)
T KOG0292|consen  298 LAAHPELNLFAAGHDSGMIVFKLERER  324 (1202)
T ss_pred             EEecCCcceeeeecCCceEEEEEcccC
Confidence                  337888999988777666443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.4e-33  Score=236.75  Aligned_cols=269  Identities=23%  Similarity=0.397  Sum_probs=229.4

Q ss_pred             eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEE
Q 035621           31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYA  109 (387)
Q Consensus        31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i  109 (387)
                      +.++++|..+|.+++|+|++.    .+++++.+|.+++|++.+++....+. +...+..+.|+|+++++++++.+|.|++
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~----~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i   77 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGK----LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRL   77 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCC----EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence            346778999999999999643    34447889999999998887666555 5567889999999999999999999999


Q ss_pred             EeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee
Q 035621          110 ISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI  189 (387)
Q Consensus       110 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  189 (387)
                      ||+.+++.+..+..|...+.++.|+|+++++++++.|+.+.+||+            ........+..|...+.++.++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~~~~~i~~~~~~~  145 (289)
T cd00200          78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV------------ETGKCLTTLRGHTDWVNSVAFSP  145 (289)
T ss_pred             EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC------------CCcEEEEEeccCCCcEEEEEEcC
Confidence            999988888888889999999999999888888888999999999            34556677778999999999998


Q ss_pred             CCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEee
Q 035621          190 GSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL  268 (387)
Q Consensus       190 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  268 (387)
                      ++  .++++++.|+.|++||+++++.+..+. +...+.+++|+|+++.+++++.++.+++||+....         ....
T Consensus       146 ~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---------~~~~  214 (289)
T cd00200         146 DG--TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK---------CLGT  214 (289)
T ss_pred             cC--CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc---------eecc
Confidence            73  788888889999999999888888877 45689999999999999999999999999998622         2222


Q ss_pred             cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          269 ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       269 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      ...|...+.+++|+|++.++++++.||.|++|++.+++.+..+..+ ...+.++.|.+.
T Consensus       215 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~  272 (289)
T cd00200         215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVTSLAWSPD  272 (289)
T ss_pred             hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcEEEEEECCC
Confidence            3367889999999999889998888999999999999999988855 447888888764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=6.4e-34  Score=226.02  Aligned_cols=268  Identities=18%  Similarity=0.263  Sum_probs=224.4

Q ss_pred             ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNV  107 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i  107 (387)
                      ..+..|..|..+|.+++.+|+    ..+.+||+.|....+|++.++.....+. |.+.|+++.|+.+|.+||+|+.+|.|
T Consensus        55 dS~~tF~~H~~svFavsl~P~----~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v  130 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPN----NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKV  130 (399)
T ss_pred             cceeehhhcCCceEEEEeCCC----CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccE
Confidence            346678999999999999994    4455569999999999999998776665 88999999999999999999999999


Q ss_pred             EEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621          108 YAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC  187 (387)
Q Consensus       108 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  187 (387)
                      ++|+..++.....+...-..+.-+.|+|.+..|+.|+.||.+.+|.+            ++....+.+.+|+.++++-.|
T Consensus       131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i------------p~~~~~kv~~Gh~~~ct~G~f  198 (399)
T KOG0296|consen  131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI------------PSQALCKVMSGHNSPCTCGEF  198 (399)
T ss_pred             EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC------------CCcceeeEecCCCCCcccccc
Confidence            99999999888888655678889999999999999999999999999            566788899999999999999


Q ss_pred             eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec--CC------------------------------------------
Q 035621          188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF--PC------------------------------------------  223 (387)
Q Consensus       188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~------------------------------------------  223 (387)
                      .|++  +.++++..||+|++||+.+++++..+..  ..                                          
T Consensus       199 ~pdG--Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~  276 (399)
T KOG0296|consen  199 IPDG--KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP  276 (399)
T ss_pred             cCCC--ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence            9984  9999999999999999999988766541  00                                          


Q ss_pred             -----------ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621          224 -----------AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA  292 (387)
Q Consensus       224 -----------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  292 (387)
                                 .|-++.++..-.+.|+|+-||+|.|||+....         ++.. -.|...|+.+.|-+ ..+|++++
T Consensus       277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~---------~R~~-c~he~~V~~l~w~~-t~~l~t~c  345 (399)
T KOG0296|consen  277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST---------LRHI-CEHEDGVTKLKWLN-TDYLLTAC  345 (399)
T ss_pred             cccccchhhhhhhhhcccccccchhhcccccceEEEEecccch---------hhee-ccCCCceEEEEEcC-cchheeec
Confidence                       01112222233466778889999999987632         2222 26889999999998 78999999


Q ss_pred             CCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          293 EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       293 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      .+|.|+.||.++|+++..+.+|.. .|.++++++
T Consensus       346 ~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~  378 (399)
T KOG0296|consen  346 ANGKVRQWDARTGQLKFTYTGHQM-GILDFALSP  378 (399)
T ss_pred             cCceEEeeeccccceEEEEecCch-heeEEEEcC
Confidence            999999999999999999999976 787777765

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=6.4e-34  Score=216.30  Aligned_cols=274  Identities=14%  Similarity=0.184  Sum_probs=235.9

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEe--ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAH--FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~   79 (387)
                      ++|+.+|..|++|+.|+++.+|++........  ..+|.+.|-.++|+|.   ....+++++.|.+|++||+..+++...
T Consensus        26 v~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~---~~d~~atas~dk~ir~wd~r~~k~~~~  102 (313)
T KOG1407|consen   26 VAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK---HPDLFATASGDKTIRIWDIRSGKCTAR  102 (313)
T ss_pred             EEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC---CCcceEEecCCceEEEEEeccCcEEEE
Confidence            68999999999999999999999987755543  4789999999999984   233555689999999999999999999


Q ss_pred             cCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccc
Q 035621           80 IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVD  159 (387)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  159 (387)
                      +.....-..+.|+|+|+++++++.|..|.+.|.++.+.....+ ....+.-+.|+.++.+++.....|.|.|...     
T Consensus       103 i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy-----  176 (313)
T KOG1407|consen  103 IETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSY-----  176 (313)
T ss_pred             eeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEec-----
Confidence            9888877889999999999999999999999999888776654 3556788999988888888888899999887     


Q ss_pred             cCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEE
Q 035621          160 EHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFF  238 (387)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~  238 (387)
                             +..+++..+++|.....||.|.|++  ++|++|+.|-.+.+||+...-+++.+. +.-+|..+.|+.+|++|+
T Consensus       177 -------psLkpv~si~AH~snCicI~f~p~G--ryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA  247 (313)
T KOG1407|consen  177 -------PSLKPVQSIKAHPSNCICIEFDPDG--RYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA  247 (313)
T ss_pred             -------cccccccccccCCcceEEEEECCCC--ceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence                   7788999999999888888888885  999999999999999999999999987 788999999999999999


Q ss_pred             EEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC---------CcEEEEECC
Q 035621          239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED---------GSVYIWEIE  303 (387)
Q Consensus       239 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~~  303 (387)
                      +++.|..|-|-+.+++.        .+...  .+.++...++|+|...+||-++.|         |.|++|-+.
T Consensus       248 SaSEDh~IDIA~vetGd--------~~~eI--~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  248 SASEDHFIDIAEVETGD--------RVWEI--PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             ccCccceEEeEecccCC--------eEEEe--eccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            99999999999988844        44333  578999999999999999977765         456665443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.6e-35  Score=234.01  Aligned_cols=268  Identities=18%  Similarity=0.232  Sum_probs=222.6

Q ss_pred             CCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc
Q 035621           38 RSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD  116 (387)
Q Consensus        38 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  116 (387)
                      ...|.|+.+..+      .+++|..|++|++||.++..+...+. |.+.|.|+.|.  .+.+++|+.|.+|++||+++++
T Consensus       197 skgVYClQYDD~------kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge  268 (499)
T KOG0281|consen  197 SKGVYCLQYDDE------KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE  268 (499)
T ss_pred             CCceEEEEecch------hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence            445888888764      44558999999999999888887766 77899999985  4699999999999999999999


Q ss_pred             eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE
Q 035621          117 ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII  196 (387)
Q Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  196 (387)
                      ++.++-.|...|..+.|+  +.++++++.|.++.+||+...         ......+.+.+|...|+.+.|.    .+++
T Consensus       269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sp---------s~it~rrVLvGHrAaVNvVdfd----~kyI  333 (499)
T KOG0281|consen  269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASP---------TDITLRRVLVGHRAAVNVVDFD----DKYI  333 (499)
T ss_pred             hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCc---------hHHHHHHHHhhhhhheeeeccc----cceE
Confidence            999999999999999996  458999999999999999442         2233556678999999999885    3699


Q ss_pred             EEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeeccccccc
Q 035621          197 ISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGV  275 (387)
Q Consensus       197 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  275 (387)
                      ++++.|.+|++|++.+++.++++. |...|.|+.+  .++++++|+.|.+|++||+..+.         +...+.+|+.-
T Consensus       334 VsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~---------cLRvLeGHEeL  402 (499)
T KOG0281|consen  334 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA---------CLRVLEGHEEL  402 (499)
T ss_pred             EEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccH---------HHHHHhchHHh
Confidence            999999999999999999999987 7788888877  57899999999999999999843         33445689999


Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCccEE---------EEeecccCCCceeE------EEEecCCCceeeEEEecC
Q 035621          276 VVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV---------MVLKNELAGSISEM------VIATGIGGSRGCGVVKTG  340 (387)
Q Consensus       276 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~v~~~------~~~~~~~~~~~~~~~~~~  340 (387)
                      |.++.|  |.+.+++|+.||+|++||+..+...         ..+.. +.|.|..+      .+++..++.+.+|.+..+
T Consensus       403 vRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~-hsgRVFrLQFD~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  403 VRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE-HSGRVFRLQFDEFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             hhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhh-ccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence            999999  5678999999999999999887533         23332 45677776      446778888888887766


Q ss_pred             CC
Q 035621          341 KA  342 (387)
Q Consensus       341 ~~  342 (387)
                      ..
T Consensus       480 ~~  481 (499)
T KOG0281|consen  480 PP  481 (499)
T ss_pred             Cc
Confidence            55

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=1.9e-33  Score=228.19  Aligned_cols=273  Identities=21%  Similarity=0.320  Sum_probs=234.8

Q ss_pred             cCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-ccCCC
Q 035621            5 LPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NIPVP   83 (387)
Q Consensus         5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~~~   83 (387)
                      .|....+++|+.|..+.++|..+.+.+..++||...|+.+.++++    ...+++++.|..|++|......... ...|.
T Consensus       228 ~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~----~~~v~~aSad~~i~vws~~~~s~~~~~~~h~  303 (506)
T KOG0289|consen  228 IPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKD----LDTVITASADEIIRVWSVPLSSEPTSSRPHE  303 (506)
T ss_pred             cCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccc----hhheeecCCcceEEeeccccccCcccccccc
Confidence            344578999999999999999999999999999999999999994    3444558999999999987665444 44488


Q ss_pred             CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA--HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                      ++|+.+..+|.|.||++++.|+...+.|++++..+.....  ..-.+++.+|+|||.+|.+|..||.+++||+       
T Consensus       304 ~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl-------  376 (506)
T KOG0289|consen  304 EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL-------  376 (506)
T ss_pred             ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc-------
Confidence            9999999999999999999999999999999998776653  2345899999999999999999999999999       


Q ss_pred             CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCC--ceeEEEeCCCCCeEEE
Q 035621          162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC--AIMGLALDPTETDFFA  239 (387)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~  239 (387)
                           .....+..|.+|.++|..++|+.++  .+|+++..|+.|++||++..+...++..+.  .+.++.|.+.|.+|+.
T Consensus       377 -----ks~~~~a~Fpght~~vk~i~FsENG--Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~  449 (506)
T KOG0289|consen  377 -----KSQTNVAKFPGHTGPVKAISFSENG--YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI  449 (506)
T ss_pred             -----CCccccccCCCCCCceeEEEeccCc--eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe
Confidence                 5666888999999999999999874  999999999999999999999888887543  6999999999999999


Q ss_pred             EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621          240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  302 (387)
                      ++.+=.|++++-.+..       ......+..|.+..+.+.|....+++++++.|..++++.+
T Consensus       450 ~g~~l~Vy~~~k~~k~-------W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  450 AGSDLQVYICKKKTKS-------WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ecceeEEEEEeccccc-------ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            9888888887755432       2333334568889999999999999999999999988764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=9e-34  Score=220.78  Aligned_cols=275  Identities=17%  Similarity=0.230  Sum_probs=228.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCC-----------------C-ceeEeccCCCCCceeEEEcCccceeeeccccCCCC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSS-----------------G-AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS   63 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~-----------------~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d   63 (387)
                      -+|||||.++|+|+.|-.|+|.|++.                 + -.++++-.|..+|+++.|+|...++.+    ++.|
T Consensus       118 aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS----~srD  193 (430)
T KOG0640|consen  118 AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS----GSRD  193 (430)
T ss_pred             eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe----ccCC
Confidence            36999999999999999999999851                 1 246788889999999999996655554    9999


Q ss_pred             CeEEEEEccCCCcc---cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc---CCCCCeEEEEEcCCC
Q 035621           64 GSVHLYNLWSSTPL---HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS---AHDKPVSCLKISPDG  137 (387)
Q Consensus        64 ~~v~vw~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~  137 (387)
                      ++|+++|+......   +.++...+|.++.|+|.|.+|++|.....+++||+++.++...-.   .|.+.|+++.+++.+
T Consensus       194 ~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~  273 (430)
T KOG0640|consen  194 NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG  273 (430)
T ss_pred             CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc
Confidence            99999999765433   345566899999999999999999999999999999988765543   689999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee-ccC-CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE
Q 035621          138 SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHN-DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH  215 (387)
Q Consensus       138 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  215 (387)
                      ++.++++.||.|++||-            -..+++.++. +|. ..|.+..|..+  ++++++.+.|..+++|.+.++++
T Consensus       274 ~lYvTaSkDG~IklwDG------------VS~rCv~t~~~AH~gsevcSa~Ftkn--~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  274 SLYVTASKDGAIKLWDG------------VSNRCVRTIGNAHGGSEVCSAVFTKN--GKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             cEEEEeccCCcEEeecc------------ccHHHHHHHHhhcCCceeeeEEEccC--CeEEeecCCcceeeeeeecCCce
Confidence            99999999999999997            4566666653 454 46788888776  49999999999999999999999


Q ss_pred             EEEEecCC------ceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEE
Q 035621          216 LSTVTFPC------AIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNL  288 (387)
Q Consensus       216 ~~~~~~~~------~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  288 (387)
                      +..+...+      --+...|+....+++.-.. .+.+.-||.++..+.        ..+..+|.+.+..+.-||.+.-+
T Consensus       340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~--------~l~slgHn~a~R~i~HSP~~p~F  411 (430)
T KOG0640|consen  340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV--------ALLSLGHNGAVRWIVHSPVEPAF  411 (430)
T ss_pred             EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh--------hhcccCCCCCceEEEeCCCCCce
Confidence            99987321      2345667777888777665 688999999985443        22334899999999999999999


Q ss_pred             EEEeCCCcEEEEEC
Q 035621          289 VSAAEDGSVYIWEI  302 (387)
Q Consensus       289 ~s~~~dg~i~iwd~  302 (387)
                      ++|+.|..+++|--
T Consensus       412 mTcsdD~raRFWyr  425 (430)
T KOG0640|consen  412 MTCSDDFRARFWYR  425 (430)
T ss_pred             eeecccceeeeeee
Confidence            99999999999964

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.7e-34  Score=216.22  Aligned_cols=277  Identities=14%  Similarity=0.219  Sum_probs=221.4

Q ss_pred             ccccCC-CcEEEeeC-------CCCcEEEEeCCCCceeEeccC--CCCCceeEEEcCccceeeeccccCCCCCeEEEEEc
Q 035621            2 LHHLPC-NEVILTSS-------PEGPITAYNPSSGAILAHFSG--SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL   71 (387)
Q Consensus         2 l~~s~~-~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~   71 (387)
                      +.|||- .++||.+.       ..|++.|.++...+-+.++..  -.+.+..++|++.   ....+++++.||++++||+
T Consensus        14 vqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~---~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   14 VQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSEN---HENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             eEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCC---CcceEEEEecCceEEEecc
Confidence            467873 23444332       468999999875555554432  3556999999984   3345556899999999996


Q ss_pred             cCC-CcccccC-CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCC
Q 035621           72 WSS-TPLHNIP-VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDG  147 (387)
Q Consensus        72 ~~~-~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg  147 (387)
                      ... .++..++ |..+|.++.|++ ++..+++++.|++|++|+....+-+.++++|..-|...+|+| .++.+++++.|+
T Consensus        91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~  170 (311)
T KOG0277|consen   91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG  170 (311)
T ss_pred             CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence            433 4666665 778999999998 566788889999999999999999999999999999999999 678999999999


Q ss_pred             cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEEe-cCCce
Q 035621          148 VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTVT-FPCAI  225 (387)
Q Consensus       148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~v  225 (387)
                      .+++||++.           .++. ..+..|...|.++.|+... .++++||+.|+.|++||+++.+ ++..+. |.-.|
T Consensus       171 ~l~lwdvr~-----------~gk~-~~i~ah~~Eil~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AV  237 (311)
T KOG0277|consen  171 TLRLWDVRS-----------PGKF-MSIEAHNSEILCCDWSKYN-HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAV  237 (311)
T ss_pred             eEEEEEecC-----------CCce-eEEEeccceeEeecccccC-CcEEEecCCCceEEEEehhhccccceeecCCceEE
Confidence            999999953           2333 3388999999999998764 6899999999999999999754 455555 67789


Q ss_pred             eEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEEeCCCcEEEEEC
Q 035621          226 MGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       226 ~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~  302 (387)
                      ..+.|+|.. ..|++++.|-++++||...+.        ...+....|+.-+..+.|++ ++.++|+.+.|+.++||+.
T Consensus       238 Rkvk~Sph~~~lLaSasYDmT~riw~~~~~d--------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  238 RKVKFSPHHASLLASASYDMTVRIWDPERQD--------SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEEecCcchhhHhhhccccceEEecccccch--------hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            999999975 678888999999999998632        33333446888999999986 5679999999999999984

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-33  Score=231.96  Aligned_cols=264  Identities=21%  Similarity=0.310  Sum_probs=224.3

Q ss_pred             CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC
Q 035621           37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG  115 (387)
Q Consensus        37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  115 (387)
                      ...+|.+++|+|.......    ....-.+.+|+..+....+.+. +...++++.|-.||++|++|...|.|++||+.+.
T Consensus        25 e~~~vssl~fsp~~P~d~a----Vt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFA----VTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             ccCcceeEecCCCCCCceE----EecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence            3456999999994332221    3456689999998887777554 7889999999999999999999999999998777


Q ss_pred             ceeEEccCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCc
Q 035621          116 DILRSFSAHDKPVSCLKISPD-GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS  194 (387)
Q Consensus       116 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  194 (387)
                      ..++.+.+|+.++..+.|+|+ +..+++|+.|+.+++||+            .+......+.+|.+.|.+.+++|.. +.
T Consensus       101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~------------s~a~v~~~l~~htDYVR~g~~~~~~-~h  167 (487)
T KOG0310|consen  101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL------------STAYVQAELSGHTDYVRCGDISPAN-DH  167 (487)
T ss_pred             HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc------------CCcEEEEEecCCcceeEeeccccCC-Ce
Confidence            788889999999999999995 457788888999999999            3444456889999999999999985 67


Q ss_pred             eEEEEeCCCcEEEEeCCCC-cEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeeccccc
Q 035621          195 IIISCSMDCTCKFWRLLNG-THLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHD  273 (387)
Q Consensus       195 ~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  273 (387)
                      +++||+.||.|++||++.. ..+.++.|..+|..+.+-|.|..+++++. ..+++||+..+        .........|.
T Consensus       168 ivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G--------~qll~~~~~H~  238 (487)
T KOG0310|consen  168 IVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTG--------GQLLTSMFNHN  238 (487)
T ss_pred             EEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCC--------ceehhhhhccc
Confidence            9999999999999999987 88889999999999999999999988875 48999999973        33333334599


Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621          274 GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       274 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  328 (387)
                      ..|+|+++..++..|++|+-|+.|++||+.+.+.+..+.-  +++|-+++++++.
T Consensus       239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~--~~pvLsiavs~dd  291 (487)
T KOG0310|consen  239 KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY--PGPVLSIAVSPDD  291 (487)
T ss_pred             ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec--ccceeeEEecCCC
Confidence            9999999999999999999999999999999999998874  5789999888844

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=5.5e-33  Score=221.79  Aligned_cols=269  Identities=17%  Similarity=0.203  Sum_probs=219.5

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc-----cCC
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-----IPV   82 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~-----~~~   82 (387)
                      ++.+++|+.||.++|||. .|+....+.+|.++|.+++|..... ....+++++.|.++++|.++.++....     -.|
T Consensus       115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~-~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH  192 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNS-SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGH  192 (423)
T ss_pred             CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCC-ccceEEEecCCceEEEEEecCchhhhhHHhHhccc
Confidence            679999999999999996 6999999999999999888864211 112577799999999999987754322     247


Q ss_pred             CCCeeeEEeccCCCEEEEecCCCcEEEEeCCC-------------------------CceeEEccCCCCCeEEEEEcCCC
Q 035621           83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPK-------------------------GDILRSFSAHDKPVSCLKISPDG  137 (387)
Q Consensus        83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~  137 (387)
                      ...|-++...++|..+++|+.|..|.+|+.++                         +.++..+.+|..+|.++.|++ .
T Consensus       193 k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~  271 (423)
T KOG0313|consen  193 KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A  271 (423)
T ss_pred             ccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-C
Confidence            78999999999999999999999999999321                         235667889999999999997 6


Q ss_pred             CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc---
Q 035621          138 SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT---  214 (387)
Q Consensus       138 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---  214 (387)
                      ..+++++.|.+|+.||+            .......++. ....+.++.++|..  .+|++|+.|..|++||.+++.   
T Consensus       272 ~v~yS~SwDHTIk~WDl------------etg~~~~~~~-~~ksl~~i~~~~~~--~Ll~~gssdr~irl~DPR~~~gs~  336 (423)
T KOG0313|consen  272 TVIYSVSWDHTIKVWDL------------ETGGLKSTLT-TNKSLNCISYSPLS--KLLASGSSDRHIRLWDPRTGDGSV  336 (423)
T ss_pred             CceEeecccceEEEEEe------------ecccceeeee-cCcceeEeeccccc--ceeeecCCCCceeecCCCCCCCce
Confidence            68999999999999999            4555555544 45678899999875  899999999999999999864   


Q ss_pred             EEEEE-ecCCceeEEEeCCCCC-eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621          215 HLSTV-TFPCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA  292 (387)
Q Consensus       215 ~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  292 (387)
                      ...++ .|.+-|.++.|+|... +|++++.|+.+++||++.        .......+.+|...|.++.|. ++..|++||
T Consensus       337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS--------~k~plydI~~h~DKvl~vdW~-~~~~IvSGG  407 (423)
T KOG0313|consen  337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS--------TKAPLYDIAGHNDKVLSVDWN-EGGLIVSGG  407 (423)
T ss_pred             eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc--------CCCcceeeccCCceEEEEecc-CCceEEecc
Confidence            22333 3788999999999765 567788899999999998        333334445899999999997 467999999


Q ss_pred             CCCcEEEEECC
Q 035621          293 EDGSVYIWEIE  303 (387)
Q Consensus       293 ~dg~i~iwd~~  303 (387)
                      .|.+|+|+.-.
T Consensus       408 aD~~l~i~~~~  418 (423)
T KOG0313|consen  408 ADNKLRIFKGS  418 (423)
T ss_pred             CcceEEEeccc
Confidence            99999998643

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=2.3e-33  Score=248.27  Aligned_cols=272  Identities=18%  Similarity=0.303  Sum_probs=233.6

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEe-ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCC
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAH-FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEP   85 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~   85 (387)
                      ..++++++.+++|++||..++..+.. +.+|.+.|.++++..    ....+++|+.|.++++||..++++...+. |.+.
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~----~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st  293 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS----GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS  293 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec----CCCEEEEEecCCcEEeEecCCCcEEEEecCCCce
Confidence            56889999999999999999999888 999999999999985    23344558999999999999999999998 7788


Q ss_pred             eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621           86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDK  165 (387)
Q Consensus        86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  165 (387)
                      +.++...+  .++++|+.|.+|++|++.++.++..+.+|.++|+++..+  +.++++|+.|++|++||+           
T Consensus       294 v~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~-----------  358 (537)
T KOG0274|consen  294 VRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDP-----------  358 (537)
T ss_pred             EEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEh-----------
Confidence            88888755  478889999999999999999999999999999999997  789999999999999999           


Q ss_pred             CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-cEEEEEecCCceeEEEeCCCCCeEEEEccCC
Q 035621          166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-THLSTVTFPCAIMGLALDPTETDFFAAGSDG  244 (387)
Q Consensus       166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  244 (387)
                       ...++++.+.+|...|.++.+...   ..+++|+.|++|++||+++. +++..+.++..+. -.+...+++|++++.|+
T Consensus       359 -~~~~cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs~~aD~  433 (537)
T KOG0274|consen  359 -RTGKCLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVSSSADG  433 (537)
T ss_pred             -hhceeeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCcccc-cccccccceeEeccccc
Confidence             678899999999999999977543   68999999999999999999 8998888554433 33444678999999999


Q ss_pred             cEEEEeccccccccccccceeEeeccc-ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          245 LIYKGLLKYQSRQQMHKGQELVTLANR-HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       245 ~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      .|++||...+..         ...+.+ |...|..+++.  ...+++++.||++++||++++++.+.+-.+
T Consensus       434 ~Ik~WD~~~~~~---------~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~  493 (537)
T KOG0274|consen  434 TIKLWDAEEGEC---------LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLST  493 (537)
T ss_pred             cEEEeecccCce---------eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence            999999988432         222233 66888888886  467888999999999999999999877433

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.9e-33  Score=240.75  Aligned_cols=277  Identities=19%  Similarity=0.245  Sum_probs=237.2

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      +++|.+...+++|+. +.|+||+..+.++++++...  -+.+..|-|..    .+++.|...|.+.+||+.+...+.+++
T Consensus       379 l~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd----~~Iv~G~k~Gel~vfdlaS~~l~Eti~  451 (888)
T KOG0306|consen  379 LCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCG--YILASKFVPGD----RYIVLGTKNGELQVFDLASASLVETIR  451 (888)
T ss_pred             EEeecCceeeeecCC-CcEEEEEccCcceeEEeccc--cEEEEEecCCC----ceEEEeccCCceEEEEeehhhhhhhhh
Confidence            578888888888764 78999999999999999643  68888999943    444559999999999999998888877


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC-----CceeE--Ecc-----CCCCCeEEEEEcCCCCEEEEEeCCCc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK-----GDILR--SFS-----AHDKPVSCLKISPDGSLLISGGDDGV  148 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~--~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~  148 (387)
                       |.+.+..++.+||+..+++|+.|.+|++||..-     +...+  .+.     .-...|.|+.+|||+++|+++--|.+
T Consensus       452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnT  531 (888)
T KOG0306|consen  452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNT  531 (888)
T ss_pred             ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCe
Confidence             788999999999999999999999999999731     21111  111     23567999999999999999999999


Q ss_pred             EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeE
Q 035621          149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMG  227 (387)
Q Consensus       149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~  227 (387)
                      +++|-+            .+-+....+.+|.-||.|+..+|++  .+++|||.|..|++|-+.-|.|-+++- |...|.+
T Consensus       532 VkVyfl------------DtlKFflsLYGHkLPV~smDIS~DS--klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~  597 (888)
T KOG0306|consen  532 VKVYFL------------DTLKFFLSLYGHKLPVLSMDISPDS--KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS  597 (888)
T ss_pred             EEEEEe------------cceeeeeeecccccceeEEeccCCc--CeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence            999988            5666778899999999999999996  999999999999999999999888775 8899999


Q ss_pred             EEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccE
Q 035621          228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  307 (387)
                      +.|-|....+++++.|+.|+-||-..         ......+.+|...|++++.+|+|.++++++.|.+|++|.-....+
T Consensus       598 V~F~P~~~~FFt~gKD~kvKqWDg~k---------Fe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  598 VQFLPKTHLFFTCGKDGKVKQWDGEK---------FEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             EEEcccceeEEEecCcceEEeechhh---------hhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence            99999999999999999999999876         233344568999999999999999999999999999999766444


Q ss_pred             E
Q 035621          308 V  308 (387)
Q Consensus       308 ~  308 (387)
                      +
T Consensus       669 ~  669 (888)
T KOG0306|consen  669 I  669 (888)
T ss_pred             e
Confidence            3

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.3e-32  Score=257.13  Aligned_cols=273  Identities=14%  Similarity=0.155  Sum_probs=217.1

Q ss_pred             CCcEEEEeCCCCceeEe-----ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC----C----cccccCCC
Q 035621           17 EGPITAYNPSSGAILAH-----FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS----T----PLHNIPVP   83 (387)
Q Consensus        17 dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~----~----~~~~~~~~   83 (387)
                      +|.+++|+..+......     +..|...|.+++|+|++.    .+++++.|+.|++|+....    .    +...+.+.
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~----~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~  532 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGE----FFATAGVNKKIKIFECESIIKDGRDIHYPVVELASR  532 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCC----EEEEEeCCCEEEEEECCcccccccccccceEEeccc
Confidence            67788888876554433     345889999999999654    4555999999999997542    1    12233345


Q ss_pred             CCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           84 EPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        84 ~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                      ..+.+++|++ ++.+|++++.||.|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.|+.|++||+       
T Consensus       533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~-------  605 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI-------  605 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC-------
Confidence            6789999987 478999999999999999999999999999999999999997 7889999999999999999       


Q ss_pred             CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEEe-cCCceeEEEeCCCCCeEEE
Q 035621          162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTVT-FPCAIMGLALDPTETDFFA  239 (387)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~  239 (387)
                           .....+..+..+ ..+.++.|.+. ++.+|++|+.|+.|++||+++.+ .+..+. |...|.++.|. ++.++++
T Consensus       606 -----~~~~~~~~~~~~-~~v~~v~~~~~-~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs  677 (793)
T PLN00181        606 -----NQGVSIGTIKTK-ANICCVQFPSE-SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVS  677 (793)
T ss_pred             -----CCCcEEEEEecC-CCeEEEEEeCC-CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEE
Confidence                 344455566544 67889998654 26899999999999999998765 344444 77889999997 6789999


Q ss_pred             EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEe
Q 035621          240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVL  311 (387)
Q Consensus       240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (387)
                      ++.|+.|++||+.......   .......+.+|...+..++|+|++.+|++|+.|+.|++|+......+..+
T Consensus       678 ~s~D~~ikiWd~~~~~~~~---~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~  746 (793)
T PLN00181        678 SSTDNTLKLWDLSMSISGI---NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY  746 (793)
T ss_pred             EECCCEEEEEeCCCCcccc---CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence            9999999999997532110   11223345589999999999999999999999999999998877655444

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.1e-32  Score=236.32  Aligned_cols=295  Identities=15%  Similarity=0.235  Sum_probs=247.3

Q ss_pred             EEEeeCCCCcEEEEeCCCCcee---------EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621           10 VILTSSPEGPITAYNPSSGAIL---------AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      .|++ -.++++..|.++.....         .++.+|...|++++++.+..+.+     .+..+.+++|+..+.++++++
T Consensus       337 ~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~-----Sga~~SikiWn~~t~kciRTi  410 (888)
T KOG0306|consen  337 TLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLA-----SGAGESIKIWNRDTLKCIRTI  410 (888)
T ss_pred             eEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeee-----ecCCCcEEEEEccCcceeEEe
Confidence            3444 55678988887652111         35678999999999999777666     356789999999999999999


Q ss_pred             CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                      ... -+.+..|-|.++++++|..+|.+.+||+.+...+.++++|.+.|.+++.+||++.+++|+.|.+|++||..-... 
T Consensus       411 ~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-  488 (888)
T KOG0306|consen  411 TCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-  488 (888)
T ss_pred             ccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-
Confidence            876 788999999999999999999999999999999999999999999999999999999999999999999843322 


Q ss_pred             CCCCCCCCccceE-----eeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCC
Q 035621          161 HTDDKNPDDLMLQ-----KFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTE  234 (387)
Q Consensus       161 ~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~  234 (387)
                      ...    +...+.     ..-.-...|.|+.++|++  .+|+.+=-|.++++|-+.+.+..-++. |.-+|.|+.++||+
T Consensus       489 ~~g----t~~k~lsl~~~rtLel~ddvL~v~~Spdg--k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS  562 (888)
T KOG0306|consen  489 VPG----TQKKVLSLKHTRTLELEDDVLCVSVSPDG--KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS  562 (888)
T ss_pred             cCc----ccceeeeeccceEEeccccEEEEEEcCCC--cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc
Confidence            111    111111     111235678999999985  999999999999999999988776665 88899999999999


Q ss_pred             CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          235 TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       235 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      +.+++|+.|.+|++|-+..++..         ..+.+|...|+++.|.|+..++.++|.|+.|+-||-+.-+.++.+.+|
T Consensus       563 klivTgSADKnVKiWGLdFGDCH---------KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H  633 (888)
T KOG0306|consen  563 KLIVTGSADKNVKIWGLDFGDCH---------KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH  633 (888)
T ss_pred             CeEEeccCCCceEEeccccchhh---------hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc
Confidence            99999999999999999884432         223489999999999999999999999999999999999999999999


Q ss_pred             cCCCceeEEEEecC
Q 035621          315 LAGSISEMVIATGI  328 (387)
Q Consensus       315 ~~~~v~~~~~~~~~  328 (387)
                      +. .|.+++.++..
T Consensus       634 ~~-ev~cLav~~~G  646 (888)
T KOG0306|consen  634 HS-EVWCLAVSPNG  646 (888)
T ss_pred             hh-eeeeeEEcCCC
Confidence            76 89999887764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=7e-33  Score=221.21  Aligned_cols=273  Identities=16%  Similarity=0.191  Sum_probs=220.1

Q ss_pred             CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCC---CEEEEecCCCcEEEEeCC
Q 035621           37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADG---SYLFTGGLSGNVYAISVP  113 (387)
Q Consensus        37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~  113 (387)
                      |.+.|.++...+      .++++|+.||.+++||...........|.+++..++|.-..   ..+++++.|.++++|..+
T Consensus       104 hdDWVSsv~~~~------~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~  177 (423)
T KOG0313|consen  104 HDDWVSSVKGAS------KWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN  177 (423)
T ss_pred             chhhhhhhcccC------ceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence            566666666554      35556899999999998544444444588899988875433   359999999999999988


Q ss_pred             CCcee----EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC-------------CCCCCCCccceEeee
Q 035621          114 KGDIL----RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH-------------TDDKNPDDLMLQKFV  176 (387)
Q Consensus       114 ~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~~~~~  176 (387)
                      .++..    ..-++|...|-++...+++..+++|+.|.+|++|+........             .........++..+.
T Consensus       178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~  257 (423)
T KOG0313|consen  178 VGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE  257 (423)
T ss_pred             CchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec
Confidence            77543    3345999999999999999999999999999999932211100             111123456788899


Q ss_pred             ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccc
Q 035621          177 AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSR  256 (387)
Q Consensus       177 ~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  256 (387)
                      +|..+|.++.|++.   ..+++++.|.+|+.||+.++....++..+..++++.++|..++|++|+.|..|++||.+.+. 
T Consensus       258 GHt~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~-  333 (423)
T KOG0313|consen  258 GHTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD-  333 (423)
T ss_pred             ccccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCC-
Confidence            99999999999874   79999999999999999999999999999999999999999999999999999999999864 


Q ss_pred             ccccccceeEeecccccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCcc-EEEEeecccCCCceeEEEE
Q 035621          257 QQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAAEDGSVYIWEIEKRQ-VVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~  325 (387)
                           +..+...+.+|.+.|.++.|+|... +|++|+.|+++++||+++-+ ++..+..|.+ .|-++.+.
T Consensus       334 -----gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D-Kvl~vdW~  398 (423)
T KOG0313|consen  334 -----GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND-KVLSVDWN  398 (423)
T ss_pred             -----CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc-eEEEEecc
Confidence                 3445555679999999999999765 67899999999999999988 9999998844 66655443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=9.1e-33  Score=216.67  Aligned_cols=253  Identities=21%  Similarity=0.305  Sum_probs=219.5

Q ss_pred             CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC---------CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621           37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP---------VPEPVAPLATTADGSYLFTGGLSGNV  107 (387)
Q Consensus        37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i  107 (387)
                      ...-+.|..|+|++.++    ++++.||-|.+||..+|+..+.++         +..+|.|+.|+.|...+++|+.||.|
T Consensus       212 ~KSh~EcA~FSPDgqyL----vsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI  287 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYL----VSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI  287 (508)
T ss_pred             cccchhheeeCCCCceE----eeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence            44558899999966554    459999999999999998766554         45789999999999999999999999


Q ss_pred             EEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEE
Q 035621          108 YAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAIT  186 (387)
Q Consensus       108 ~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  186 (387)
                      ++|.+++|++++.|. +|...|+|+.|+.|+..+++++.|.++++.-+            ..+++++.+.+|.+.|+...
T Consensus       288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl------------KSGK~LKEfrGHsSyvn~a~  355 (508)
T KOG0275|consen  288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL------------KSGKCLKEFRGHSSYVNEAT  355 (508)
T ss_pred             EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc------------ccchhHHHhcCccccccceE
Confidence            999999999999997 89999999999999999999999999999988            78899999999999999999


Q ss_pred             EeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCC-CeEEEEccCCcEEEEecccccccccccc
Q 035621          187 CCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKG  262 (387)
Q Consensus       187 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~  262 (387)
                      |.+++  ..+++++.||+|++|+.++.+++.+|+.   ..+|+++..-|.+ ..++++...+++++-++..         
T Consensus       356 ft~dG--~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG---------  424 (508)
T KOG0275|consen  356 FTDDG--HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG---------  424 (508)
T ss_pred             EcCCC--CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc---------
Confidence            99885  9999999999999999999999999873   4578888887755 6788888899999988874         


Q ss_pred             ceeEeecc--cccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccC
Q 035621          263 QELVTLAN--RHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA  316 (387)
Q Consensus       263 ~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  316 (387)
                      +.+..+..  ...+...+.+.+|.|.++.+.++|+.++.|.+.+|++.+.+..|..
T Consensus       425 QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk  480 (508)
T KOG0275|consen  425 QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK  480 (508)
T ss_pred             eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc
Confidence            23333322  2345577788999999999999999999999999999999987755

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.8e-33  Score=221.47  Aligned_cols=279  Identities=18%  Similarity=0.225  Sum_probs=226.3

Q ss_pred             ccccCCC-cEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCN-EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      |+=+|.. ..+++|+.||.|+|||+...++..+++.|.+.|..|++...      .+++++.|.+|+.|.++. .+++++
T Consensus        72 lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~------~~~tvgdDKtvK~wk~~~-~p~~ti  144 (433)
T KOG0268|consen   72 LAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT------SFFTVGDDKTVKQWKIDG-PPLHTI  144 (433)
T ss_pred             hhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc------ceEEecCCcceeeeeccC-Ccceee
Confidence            3445555 67899999999999999999999999999999999999873      344588999999999865 477777


Q ss_pred             CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccc
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVD  159 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~  159 (387)
                      .....+..+.-+..++.++++|.  .|.|||..-..++..+.-....|.++.|+|.. ..|+++++|+.|.+||++    
T Consensus       145 lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R----  218 (433)
T KOG0268|consen  145 LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR----  218 (433)
T ss_pred             eccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc----
Confidence            77888888888888888988875  49999998888999888777889999999954 577888899999999994    


Q ss_pred             cCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEEe-cCCceeEEEeCCCCCeE
Q 035621          160 EHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTVT-FPCAIMGLALDPTETDF  237 (387)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l  237 (387)
                              ...+++.+. ....-+.|+|+|.  ...++++++|..++.||++..+ ++..+. |.+.|.++.|+|.|+.+
T Consensus       219 --------~~~Pl~KVi-~~mRTN~IswnPe--afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef  287 (433)
T KOG0268|consen  219 --------QASPLKKVI-LTMRTNTICWNPE--AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF  287 (433)
T ss_pred             --------cCCccceee-eeccccceecCcc--ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence                    344444432 2344567999995  4789999999999999999764 344443 77899999999999999


Q ss_pred             EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      ++|+.|.+|+||..+.+.......        ...-..|.++.||.|.+++++|+.|+.|++|.....+.+..+.
T Consensus       288 vsgsyDksIRIf~~~~~~SRdiYh--------tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t  354 (433)
T KOG0268|consen  288 VSGSYDKSIRIFPVNHGHSRDIYH--------TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVIT  354 (433)
T ss_pred             ccccccceEEEeecCCCcchhhhh--------HhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCC
Confidence            999999999999988743222111        1223569999999999999999999999999988777665554

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.7e-30  Score=229.97  Aligned_cols=226  Identities=15%  Similarity=0.213  Sum_probs=183.1

Q ss_pred             CCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCC-------ceeEEccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEE
Q 035621           81 PVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKG-------DILRSFSAHDKPVSCLKISPDG-SLLISGGDDGVIAT  151 (387)
Q Consensus        81 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i  151 (387)
                      .|.+.|.+++|+| ++++|++|+.|++|++||+.++       +++..+.+|...|.+++|+|++ ++|++++.|+.|++
T Consensus        73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI  152 (493)
T PTZ00421         73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV  152 (493)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence            3778999999999 8899999999999999999765       3467788999999999999975 69999999999999


Q ss_pred             EeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCC-ceeEEE
Q 035621          152 VPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPC-AIMGLA  229 (387)
Q Consensus       152 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~-~v~~~~  229 (387)
                      ||+            ........+..|...|.+++|+|++  .+|++++.|++|++||+++++.+..+. |.. ....+.
T Consensus       153 WDl------------~tg~~~~~l~~h~~~V~sla~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~  218 (493)
T PTZ00421        153 WDV------------ERGKAVEVIKCHSDQITSLEWNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL  218 (493)
T ss_pred             EEC------------CCCeEEEEEcCCCCceEEEEEECCC--CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEE
Confidence            999            4556677888999999999999985  899999999999999999999888876 333 345788


Q ss_pred             eCCCCCeEEEEc----cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe-CCCcEEEEECCC
Q 035621          230 LDPTETDFFAAG----SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA-EDGSVYIWEIEK  304 (387)
Q Consensus       230 ~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~  304 (387)
                      |.+++..+++++    .|+.|++||++....       ........+...+....|++++++|++++ .|+.|++||+.+
T Consensus       219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-------p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-------PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             EcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-------ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            999888887654    478999999986321       11111112334566678899999999887 599999999999


Q ss_pred             ccEEEEeecccCCCceeEEEEec
Q 035621          305 RQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       305 ~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      ++++.........++.+++|.+-
T Consensus       292 ~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        292 ERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             CceEEEeeccCCCCCcceEeccc
Confidence            99888776555556777766653

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-30  Score=201.68  Aligned_cols=277  Identities=16%  Similarity=0.193  Sum_probs=221.1

Q ss_pred             ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-CCeeeEEeccCCCEEEEecC--CC
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-EPVAPLATTADGSYLFTGGL--SG  105 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~--dg  105 (387)
                      ++.+.+..-...|+++.|++++..+.    +++.|.++++||..++++++.+..+ -.+..++|....+.++.++.  |.
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~li----tss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~   80 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLI----TSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDD   80 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEE----EecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCC
Confidence            34455555677899999999655544    4889999999999999999988855 46888888887777777765  78


Q ss_pred             cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEE
Q 035621          106 NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAI  185 (387)
Q Consensus       106 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  185 (387)
                      +|+..++.+.+.++-+.+|...|++++.+|-+..+++++.|++|++||++            ...+...+.....+  .+
T Consensus        81 tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR------------~~~cqg~l~~~~~p--i~  146 (311)
T KOG1446|consen   81 TIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR------------VKKCQGLLNLSGRP--IA  146 (311)
T ss_pred             ceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEec------------CCCCceEEecCCCc--ce
Confidence            99999999999999999999999999999988999999999999999994            33444444333333  46


Q ss_pred             EEeeCCCCceEEEEeCCCcEEEEeCCCC--cEEEEEec----CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc
Q 035621          186 TCCIGSFNSIIISCSMDCTCKFWRLLNG--THLSTVTF----PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM  259 (387)
Q Consensus       186 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  259 (387)
                      +|.|.+  -++|++.....|++||++.-  .+..++..    ....+.+.|+|||++|+.++..+.+++.|.-.+.....
T Consensus       147 AfDp~G--LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t  224 (311)
T KOG1446|consen  147 AFDPEG--LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKST  224 (311)
T ss_pred             eECCCC--cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeee
Confidence            777774  88888888779999999864  45555552    46789999999999999999999999999888653332


Q ss_pred             cccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCc
Q 035621          260 HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGS  331 (387)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  331 (387)
                      ....      .....-....+|+||++++++|+.||+|.+|++++++.+..+.+...++++++.|.|.....
T Consensus       225 fs~~------~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf  290 (311)
T KOG1446|consen  225 FSGY------PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMF  290 (311)
T ss_pred             Eeec------cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeee
Confidence            2111      11111236778999999999999999999999999999999999878899999877765444

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.7e-32  Score=210.29  Aligned_cols=275  Identities=19%  Similarity=0.246  Sum_probs=232.2

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc------cCC-------
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL------WSS-------   74 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~------~~~-------   74 (387)
                      ...+.+++.|.+.+||.+++|.++.++.+|.+.|++++|++.+.+.    ++++.|++..||..      ...       
T Consensus       160 qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~----lTaSGD~taHIW~~av~~~vP~~~a~~~hS  235 (481)
T KOG0300|consen  160 QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLL----LTASGDETAHIWKAAVNWEVPSNNAPSDHS  235 (481)
T ss_pred             CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceE----EEccCCcchHHHHHhhcCcCCCCCCCCCCC
Confidence            3478899999999999999999999999999999999999965554    45999999999972      110       


Q ss_pred             -C--------------------------cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCC
Q 035621           75 -T--------------------------PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDK  126 (387)
Q Consensus        75 -~--------------------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  126 (387)
                       +                          ++..+. |...|.+..|...|+.+++++.|.+..+||+++++++..+.+|..
T Consensus       236 sEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~  315 (481)
T KOG0300|consen  236 SEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS  315 (481)
T ss_pred             chhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcch
Confidence             0                          011111 445677888989999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEE
Q 035621          127 PVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCK  206 (387)
Q Consensus       127 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~  206 (387)
                      ..+.++-+|..+++++++.|.+.++||++.           .-..+..|++|...|++..|..+   ..+++|+.|.+|+
T Consensus       316 ELtHcstHptQrLVvTsSrDtTFRLWDFRe-----------aI~sV~VFQGHtdtVTS~vF~~d---d~vVSgSDDrTvK  381 (481)
T KOG0300|consen  316 ELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-----------AIQSVAVFQGHTDTVTSVVFNTD---DRVVSGSDDRTVK  381 (481)
T ss_pred             hccccccCCcceEEEEeccCceeEeccchh-----------hcceeeeecccccceeEEEEecC---CceeecCCCceEE
Confidence            999999999999999999999999999963           34467789999999999999876   6899999999999


Q ss_pred             EEeCCCC-cEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC
Q 035621          207 FWRLLNG-THLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG  285 (387)
Q Consensus       207 iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  285 (387)
                      +||+++. .++.++...++++.++.+..+..|+.-..+..|++||++.......     +.....+|...|+|++|..+.
T Consensus       382 vWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl-----PrtsRqgHrRMV~c~AW~eeh  456 (481)
T KOG0300|consen  382 VWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL-----PRTSRQGHRRMVTCCAWLEEH  456 (481)
T ss_pred             EeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccC-----CcccccccceeeeeeeccccC
Confidence            9999975 5788999999999999999999999999999999999986433222     122235899999999998543


Q ss_pred             --CEEEEEeCCCcEEEEECCCc
Q 035621          286 --KNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       286 --~~l~s~~~dg~i~iwd~~~~  305 (387)
                        .-|++++.|..+.=|++...
T Consensus       457 p~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  457 PACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             cccccccccccceeeeeEeccc
Confidence              35889999999999998754

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-30  Score=202.71  Aligned_cols=276  Identities=15%  Similarity=0.185  Sum_probs=225.5

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCc--cceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGK--PFIAASHISPTTGSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~   79 (387)
                      +.|+++|.+|++++.|.+++|||..+++.+.++..+.-.+..+.|...  ..+.+    +.-.|.+|+..++.+++.++.
T Consensus        20 l~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~s----Stk~d~tIryLsl~dNkylRY   95 (311)
T KOG1446|consen   20 LDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHS----STKEDDTIRYLSLHDNKYLRY   95 (311)
T ss_pred             EEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEc----cCCCCCceEEEEeecCceEEE
Confidence            579999999999999999999999999999999888778888888652  22221    234588999999999999999


Q ss_pred             cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621           80 IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        80 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                      +. |...|..++.+|-+..+++++.|++|++||++..++...+..  ..-..++|.|+|-++|++.....|++||++.. 
T Consensus        96 F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~-  172 (311)
T KOG1446|consen   96 FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSF-  172 (311)
T ss_pred             cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCCCcEEEEecCCCeEEEEEeccc-
Confidence            98 778999999999999999999999999999998887766653  23346799999999999998889999999764 


Q ss_pred             ccCCCCCCCCccceEeee---ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC----CceeEEEeC
Q 035621          159 DEHTDDKNPDDLMLQKFV---AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP----CAIMGLALD  231 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~v~~~~~~  231 (387)
                               ...+...+.   ......+.+.|+|++  ++++.++..+.+++.|.-+|..+.++...    .-....+|.
T Consensus       173 ---------dkgPF~tf~i~~~~~~ew~~l~FS~dG--K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  173 ---------DKGPFTTFSITDNDEAEWTDLEFSPDG--KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             ---------CCCCceeEccCCCCccceeeeEEcCCC--CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence                     223333333   335678899999985  88898999999999999999998888732    123688999


Q ss_pred             CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621          232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  305 (387)
                      ||++++++|+.||.|.+|++++        +.+...+...+.+++.++.|+|.-.+++++  +..+-+|=....
T Consensus       242 Pds~Fvl~gs~dg~i~vw~~~t--------g~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~  305 (311)
T KOG1446|consen  242 PDSKFVLSGSDDGTIHVWNLET--------GKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDED  305 (311)
T ss_pred             CCCcEEEEecCCCcEEEEEcCC--------CcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecccc
Confidence            9999999999999999999987        445555554578899999999987777776  456888865543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1.6e-32  Score=221.41  Aligned_cols=274  Identities=16%  Similarity=0.253  Sum_probs=226.5

Q ss_pred             eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--cccccCC-CCCeeeEEeccCCCEEEEecCCCcE
Q 035621           31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PLHNIPV-PEPVAPLATTADGSYLFTGGLSGNV  107 (387)
Q Consensus        31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i  107 (387)
                      ...+..|.+.+..+.|-+    ....+++++.|..|++|++...+  .+.++.. .++++.+.|.++++++++++.|+.+
T Consensus       168 ~~~ld~h~gev~~v~~l~----~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~  243 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLR----NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL  243 (459)
T ss_pred             hhhhhccccccceeEEcc----CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence            445667999999999998    44566779999999999997666  3444443 4679999999999999999999999


Q ss_pred             EEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621          108 YAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC  187 (387)
Q Consensus       108 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  187 (387)
                      ++|++.+.+...++.+|...|+++.|......+++|+.|.+|++||+.            ...+.++.. ....+..|..
T Consensus       244 r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~------------k~~C~kt~l-~~S~cnDI~~  310 (459)
T KOG0288|consen  244 RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ------------KAYCSKTVL-PGSQCNDIVC  310 (459)
T ss_pred             eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhh------------hhheecccc-ccccccceEe
Confidence            999999999999999999999999998877679999999999999993            334444332 2344556665


Q ss_pred             eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEe
Q 035621          188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVT  267 (387)
Q Consensus       188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  267 (387)
                      .    ...+++|..|++|++||.++..+....+..+.|+++..++++..+.+++.|.++.++|+++......+.....  
T Consensus       311 ~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~--  384 (459)
T KOG0288|consen  311 S----ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF--  384 (459)
T ss_pred             c----ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc--
Confidence            4    2578999999999999999999999999999999999999999999999999999999998554433322111  


Q ss_pred             ecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCC-CceeEEEEecCCC
Q 035621          268 LANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAG-SISEMVIATGIGG  330 (387)
Q Consensus       268 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~  330 (387)
                         ......+.+.|||++.|+++|+.||.|+||++.++++...+...... .|+++.|.+...+
T Consensus       385 ---k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~  445 (459)
T KOG0288|consen  385 ---KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG  445 (459)
T ss_pred             ---ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence               12334899999999999999999999999999999999999876654 6888888875544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=221.98  Aligned_cols=270  Identities=17%  Similarity=0.178  Sum_probs=225.5

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~   79 (387)
                      +.|-++...|++|+.|..|++|++...+  .+.++.+..++|+++.|.++..    ++++++.|+.+++|++...+...+
T Consensus       181 v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~----~~iAas~d~~~r~Wnvd~~r~~~T  256 (459)
T KOG0288|consen  181 VEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNK----HVIAASNDKNLRLWNVDSLRLRHT  256 (459)
T ss_pred             eEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCc----eEEeecCCCceeeeeccchhhhhh
Confidence            4577888899999999999999987655  6788888899999999998433    333378999999999999998888


Q ss_pred             cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621           80 IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        80 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                      +. |.+.|+++.|......+++|+.|.+|+.||+....+.+++-. ...+..|..+  ...+++|-.|+.|++||+    
T Consensus       257 LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~----  329 (459)
T KOG0288|consen  257 LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDI----  329 (459)
T ss_pred             hcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEec----
Confidence            87 778999999998877799999999999999999888777642 3455666665  457899999999999999    


Q ss_pred             ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-----cCCceeEEEeCCC
Q 035621          159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-----FPCAIMGLALDPT  233 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~  233 (387)
                              ....+......+. .|+++..++++  ..+.+++.|.++.+.|+++.+....+.     .....+.+.|+|+
T Consensus       330 --------Rs~~~~~sv~~gg-~vtSl~ls~~g--~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd  398 (459)
T KOG0288|consen  330 --------RSADKTRSVPLGG-RVTSLDLSMDG--LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD  398 (459)
T ss_pred             --------cCCceeeEeecCc-ceeeEeeccCC--eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence                    4566667776665 99999999885  788888999999999999998888876     2456899999999


Q ss_pred             CCeEEEEccCCcEEEEeccccccccccccceeEeecccccc-cEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDG-VVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      +.|+++|+.||.|+||++.++...        ......+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus       399 ~~YvaAGS~dgsv~iW~v~tgKlE--------~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  399 GSYVAAGSADGSVYIWSVFTGKLE--------KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CceeeeccCCCcEEEEEccCceEE--------EEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            999999999999999999984432        222223333 799999999999999999999999993

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.5e-32  Score=238.40  Aligned_cols=243  Identities=14%  Similarity=0.151  Sum_probs=194.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCC------------------------------------------------------
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSS------------------------------------------------------   27 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~------------------------------------------------------   27 (387)
                      +.||+||+|||+|+.|+.|+||.+..                                                      
T Consensus       273 mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~  352 (712)
T KOG0283|consen  273 MKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPL  352 (712)
T ss_pred             EEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCC
Confidence            57999999999999999999998744                                                      


Q ss_pred             ------CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEecc-CCCEEEE
Q 035621           28 ------GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTA-DGSYLFT  100 (387)
Q Consensus        28 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  100 (387)
                            .++++.|.||.+.|..+.|+.+.+++.     ++.|.+|++|++...+++..|.|++-|+|++|+| |.+|+++
T Consensus       353 ~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLS-----SSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiS  427 (712)
T KOG0283|consen  353 KAFVFSEKPFCEFKGHTADILDLSWSKNNFLLS-----SSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFIS  427 (712)
T ss_pred             ccccccccchhhhhccchhheecccccCCeeEe-----ccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEee
Confidence                  013346678999999999998765554     7999999999999999999999999999999999 7899999


Q ss_pred             ecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC
Q 035621          101 GGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND  180 (387)
Q Consensus       101 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (387)
                      |+-||.|+||++...+.+.-. .-..-|++++|.|||+..++|+.+|.+++|+...+...........  ..+. ..|. 
T Consensus       428 GSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~--~~Kk-~~~~-  502 (712)
T KOG0283|consen  428 GSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH--NKKK-KQGK-  502 (712)
T ss_pred             cccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec--cCcc-ccCc-
Confidence            999999999999877765444 3457899999999999999999999999999854321100000000  0000 1123 


Q ss_pred             CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCCCeEEEEccCCcEEEEeccccc
Q 035621          181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQS  255 (387)
Q Consensus       181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  255 (387)
                      .|+.+.|.|... ..++..+.|..|||||.++..++..|+.   ...-....|+.||++|++++.|..||+|+.....
T Consensus       503 rITG~Q~~p~~~-~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  503 RITGLQFFPGDP-DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             eeeeeEecCCCC-CeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            899999998763 4566778899999999988888887772   2345677899999999999999999999986533

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=4.4e-31  Score=230.63  Aligned_cols=294  Identities=18%  Similarity=0.250  Sum_probs=237.1

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-CCe
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-EPV   86 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~~v   86 (387)
                      =+.++.|+.+|.+.+||+.+++.+.+++++...|+++.-+|    ....++.|..+|+|.++|+..++.+..+++. ++|
T Consensus       172 LNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsP----aLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~V  247 (910)
T KOG1539|consen  172 LNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSP----ALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRV  247 (910)
T ss_pred             eeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCC----cceEEEEeccCceEEEEEcccCcEEEEEEccccce
Confidence            36788999999999999999999999999999999999999    5555666999999999999999999999997 999


Q ss_pred             eeEEeccCCCE-EEEecCCCcEEEEeCCCCceeEEc--------------------------------------------
Q 035621           87 APLATTADGSY-LFTGGLSGNVYAISVPKGDILRSF--------------------------------------------  121 (387)
Q Consensus        87 ~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~--------------------------------------------  121 (387)
                      +.++|..||+. +++|+..|.+.+||++..+.+..+                                            
T Consensus       248 tslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~L  327 (910)
T KOG1539|consen  248 TSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLL  327 (910)
T ss_pred             eEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhe
Confidence            99999999875 566667799999999654321111                                            


Q ss_pred             ---cCCCCCeE---------------------------------------------------------------------
Q 035621          122 ---SAHDKPVS---------------------------------------------------------------------  129 (387)
Q Consensus       122 ---~~~~~~v~---------------------------------------------------------------------  129 (387)
                         .+|..+..                                                                     
T Consensus       328 R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R  407 (910)
T KOG1539|consen  328 RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR  407 (910)
T ss_pred             eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch
Confidence               12333333                                                                     


Q ss_pred             ---------------------------------------------EEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCC
Q 035621          130 ---------------------------------------------CLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDD  164 (387)
Q Consensus       130 ---------------------------------------------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  164 (387)
                                                                   +++.++.|++.+.|+..|.|-+|++          
T Consensus       408 E~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm----------  477 (910)
T KOG1539|consen  408 EKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM----------  477 (910)
T ss_pred             hhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc----------
Confidence                                                         3333444444444444444444444          


Q ss_pred             CCCCccceEee---eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc
Q 035621          165 KNPDDLMLQKF---VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       165 ~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  241 (387)
                        +.+.....+   +.|.++|+.++....  ++.+++++.+|.+++||..+...+..+.....+.++.++.....++.+.
T Consensus       478 --QSGi~r~sf~~~~ah~~~V~gla~D~~--n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~  553 (910)
T KOG1539|consen  478 --QSGIHRKSFGDSPAHKGEVTGLAVDGT--NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL  553 (910)
T ss_pred             --ccCeeecccccCccccCceeEEEecCC--CceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence              334444445   589999999988655  5899999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCcee
Q 035621          242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISE  321 (387)
Q Consensus       242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  321 (387)
                      .|-.|.++|..+         ..+.+.+.+|.+.|++++|||||++|++++.|++|++||+.++.++-.+.-.  .+.++
T Consensus       554 ddf~I~vvD~~t---------~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd--~~~~s  622 (910)
T KOG1539|consen  554 DDFSIRVVDVVT---------RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD--SPCTS  622 (910)
T ss_pred             CceeEEEEEchh---------hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC--Cccee
Confidence            999999999987         3455556789999999999999999999999999999999999999888643  46777


Q ss_pred             EEEEecCCC
Q 035621          322 MVIATGIGG  330 (387)
Q Consensus       322 ~~~~~~~~~  330 (387)
                      +.|+|..+-
T Consensus       623 ls~SPngD~  631 (910)
T KOG1539|consen  623 LSFSPNGDF  631 (910)
T ss_pred             eEECCCCCE
Confidence            877776543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-31  Score=214.77  Aligned_cols=268  Identities=14%  Similarity=0.167  Sum_probs=218.8

Q ss_pred             eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc---cccc-CCCCCeeeEEeccCCCEEEEecCCC
Q 035621           30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP---LHNI-PVPEPVAPLATTADGSYLFTGGLSG  105 (387)
Q Consensus        30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg  105 (387)
                      ..+.+..|...|+-+.|++++.+++    +++.|.+..+|.+.....   .+++ .|..+|..+.|+||.++|++++.+.
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLA----saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e  291 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLA----SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE  291 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEe----eccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence            3456778999999999999665555    499999999999865443   2222 3778999999999999999999999


Q ss_pred             cEEEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC-CCeE
Q 035621          106 NVYAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN-DSVT  183 (387)
Q Consensus       106 ~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~  183 (387)
                      .+.+||..+|.+...+. ++...+.+++|.|||..+++|+.|+.+..||+.             +.....+.+-. ..|.
T Consensus       292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-------------gn~~~~W~gvr~~~v~  358 (519)
T KOG0293|consen  292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-------------GNILGNWEGVRDPKVH  358 (519)
T ss_pred             heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-------------cchhhcccccccceeE
Confidence            99999999999888775 345789999999999999999999999999993             33333333332 4688


Q ss_pred             EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccc
Q 035621          184 AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ  263 (387)
Q Consensus       184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  263 (387)
                      ++++.+++  .++++...|..|++|+..+......+..+.+|++++++.+++++++.-.+..+++||+........    
T Consensus       359 dlait~Dg--k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k----  432 (519)
T KOG0293|consen  359 DLAITYDG--KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK----  432 (519)
T ss_pred             EEEEcCCC--cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH----
Confidence            99998885  888888899999999999888777788889999999999999999999999999999986332222    


Q ss_pred             eeEeecccccc--cEEEEEEe-cCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          264 ELVTLANRHDG--VVVSVMMM-NEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       264 ~~~~~~~~~~~--~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                           +.+|..  .+..-||- .+..++++|++|+.|+||+..+++++..+.+|. ..|+++.+.|
T Consensus       433 -----Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs-~~vNcVswNP  492 (519)
T KOG0293|consen  433 -----YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS-KTVNCVSWNP  492 (519)
T ss_pred             -----hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc-ceeeEEecCC
Confidence                 234543  34455665 355799999999999999999999999999995 4888876554

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-31  Score=203.37  Aligned_cols=262  Identities=14%  Similarity=0.199  Sum_probs=204.3

Q ss_pred             ceeEEEcC---ccceee-eccccCCCCCeEEEEEccCCCccc---ccCCCCCeeeEEeccC-CCEEEEecCCCcEEEEeC
Q 035621           41 RRGLTFAG---KPFIAA-SHISPTTGSGSVHLYNLWSSTPLH---NIPVPEPVAPLATTAD-GSYLFTGGLSGNVYAISV  112 (387)
Q Consensus        41 v~~~~~~~---~~~~~~-~~~~~~~~d~~v~vw~~~~~~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~  112 (387)
                      -.++.|+|   +....+ ....--...|++.|.++..++-+.   .+...+.+..++|+++ .+.+++++.||++++||+
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence            35788887   111111 111222457899999997554443   4446788999999995 467888899999999997


Q ss_pred             CC-CceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeC
Q 035621          113 PK-GDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIG  190 (387)
Q Consensus       113 ~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  190 (387)
                      .. ..++..++.|...|.++.|++ +.+.+++++.|++|++|+.            ..+..+.++.+|..-|....|+|.
T Consensus        91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~------------~r~~Sv~Tf~gh~~~Iy~a~~sp~  158 (311)
T KOG0277|consen   91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP------------NRPNSVQTFNGHNSCIYQAAFSPH  158 (311)
T ss_pred             CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecC------------CCCcceEeecCCccEEEEEecCCC
Confidence            43 367889999999999999998 5567888899999999998            566778889999999999999998


Q ss_pred             CCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCC-CCCeEEEEccCCcEEEEeccccccccccccceeEee
Q 035621          191 SFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDP-TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL  268 (387)
Q Consensus       191 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  268 (387)
                      . +++++++|.|+++++||++.......+. |...+.++.|+. +.+.+++|+.|+.|+.||++..        ..+...
T Consensus       159 ~-~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~--------r~pl~e  229 (311)
T KOG0277|consen  159 I-PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL--------RTPLFE  229 (311)
T ss_pred             C-CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc--------ccccee
Confidence            6 7899999999999999998754444466 667999999997 4567888999999999999983        334444


Q ss_pred             cccccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCcc-EEEEeecccCCCceeEEE
Q 035621          269 ANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWEIEKRQ-VVMVLKNELAGSISEMVI  324 (387)
Q Consensus       269 ~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~  324 (387)
                      +.+|.-.|..++|||.. ..|++++.|-+++|||...+. ++.+...|.+ -+-++.+
T Consensus       230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE-Fv~g~Dw  286 (311)
T KOG0277|consen  230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE-FVCGLDW  286 (311)
T ss_pred             ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce-EEecccc
Confidence            57999999999999964 588999999999999998554 4445554433 4444433

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=4.6e-30  Score=227.17  Aligned_cols=256  Identities=14%  Similarity=0.164  Sum_probs=194.9

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCcee-------------EeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEE
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAIL-------------AHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHL   68 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~v   68 (387)
                      ..++++..+++++.+.....|+...+..+             ..+.+|.++|.+++|+| +..    .+++++.|++|++
T Consensus        27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~----~LaSgS~DgtIkI  102 (493)
T PTZ00421         27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ----KLFTASEDGTIMG  102 (493)
T ss_pred             cccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC----EEEEEeCCCEEEE
Confidence            45677666777777777777775433221             23678999999999999 443    3455999999999


Q ss_pred             EEccCCC-------cccccC-CCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE
Q 035621           69 YNLWSST-------PLHNIP-VPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL  139 (387)
Q Consensus        69 w~~~~~~-------~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (387)
                      ||+.++.       ++..+. |...|.+++|+|++ ++|++++.|+.|++||+++++.+..+..|...|.+++|+|++++
T Consensus       103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l  182 (493)
T PTZ00421        103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL  182 (493)
T ss_pred             EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence            9997653       233333 67889999999975 69999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe-EEEEEeeCCCCceEEEEe----CCCcEEEEeCCCCc
Q 035621          140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV-TAITCCIGSFNSIIISCS----MDCTCKFWRLLNGT  214 (387)
Q Consensus       140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~  214 (387)
                      |++++.|+.|++||+            .....+..+.+|.+.. ..+.|.++.  ..+++++    .|+.|++||+++..
T Consensus       183 Latgs~Dg~IrIwD~------------rsg~~v~tl~~H~~~~~~~~~w~~~~--~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        183 LCTTSKDKKLNIIDP------------RDGTIVSSVEAHASAKSQRCLWAKRK--DLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             EEEecCCCEEEEEEC------------CCCcEEEEEecCCCCcceEEEEcCCC--CeEEEEecCCCCCCeEEEEeCCCCC
Confidence            999999999999999            4555677788887653 456677664  5565544    47899999998764


Q ss_pred             -EEEEEe--cCCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621          215 -HLSTVT--FPCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE  284 (387)
Q Consensus       215 -~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  284 (387)
                       ++....  ....+....|+++++++++++. |+.|++||+..+.        ........+..++..++|.|.
T Consensus       249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~--------~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER--------LTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc--------eEEEeeccCCCCCcceEeccc
Confidence             333333  3345667789999999999874 9999999998743        222222235567788888885

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.9e-31  Score=215.25  Aligned_cols=278  Identities=17%  Similarity=0.218  Sum_probs=223.8

Q ss_pred             eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc----c-------------c--CCCCCeeeEEe
Q 035621           31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH----N-------------I--PVPEPVAPLAT   91 (387)
Q Consensus        31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~----~-------------~--~~~~~v~~~~~   91 (387)
                      ...+..|.-++.+++++|    .+.+.++++.+++|.-|++.+++...    .             -  .|...+.+++.
T Consensus       135 ~~~~~~H~~s~~~vals~----d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av  210 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSP----DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV  210 (479)
T ss_pred             ceeeccccCcceEEEeec----cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence            556678999999999999    44555669999999999998876331    1             0  23456899999


Q ss_pred             ccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccc
Q 035621           92 TADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLM  171 (387)
Q Consensus        92 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  171 (387)
                      ++||+||++|+.|..|.||+.++.+.++.+++|.+.|.+++|-.....+++++.|+++++|++            .....
T Consensus       211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~------------~~~s~  278 (479)
T KOG0299|consen  211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSI------------DQLSY  278 (479)
T ss_pred             cCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEeh------------hHhHH
Confidence            999999999999999999999999999999999999999999988889999999999999999            55667


Q ss_pred             eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEec
Q 035621          172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLL  251 (387)
Q Consensus       172 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  251 (387)
                      +.++.+|++.|..|....-.  +.+..|+.|+++++|++.....+....+...+-|++|-.+ ..+++|+.+|.|.+|++
T Consensus       279 vetlyGHqd~v~~IdaL~re--R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  279 VETLYGHQDGVLGIDALSRE--RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSL  355 (479)
T ss_pred             HHHHhCCccceeeechhccc--ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeee
Confidence            78899999999999876553  6666677999999999976655555557778999999754 68999999999999999


Q ss_pred             cccccccccccce-eEeec--ccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc----cEEEEeecccCCCceeEEE
Q 035621          252 KYQSRQQMHKGQE-LVTLA--NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR----QVVMVLKNELAGSISEMVI  324 (387)
Q Consensus       252 ~~~~~~~~~~~~~-~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~  324 (387)
                      ............. +....  ..+..+|++++..|...++++|+.+|.|++|.+..+    .++..++  ..|.|+.++|
T Consensus       356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~~GfVNsl~f  433 (479)
T KOG0299|consen  356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS--LVGFVNSLAF  433 (479)
T ss_pred             cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc--cccEEEEEEE
Confidence            8754433221110 10000  123358999999999999999999999999999988    4444554  6789999998


Q ss_pred             EecCC
Q 035621          325 ATGIG  329 (387)
Q Consensus       325 ~~~~~  329 (387)
                      +.+..
T Consensus       434 ~~sgk  438 (479)
T KOG0299|consen  434 SNSGK  438 (479)
T ss_pred             ccCCC
Confidence            87665

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.8e-29  Score=224.32  Aligned_cols=248  Identities=12%  Similarity=0.089  Sum_probs=186.4

Q ss_pred             cCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCc--------eeEEccCCCCCe
Q 035621           59 PTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGD--------ILRSFSAHDKPV  128 (387)
Q Consensus        59 ~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~v  128 (387)
                      .|+.++.+++|+......+..+. |...|.+++|+|+ +++|++|+.||.|++||+.++.        ++..+.+|...|
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            47788999999987766665555 6789999999996 7899999999999999997642        344677899999


Q ss_pred             EEEEEcCCCCE-EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEE
Q 035621          129 SCLKISPDGSL-LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKF  207 (387)
Q Consensus       129 ~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~i  207 (387)
                      .+++|+|++.. +++++.|+.|++||++            .......+. |...|.+++|+|++  .+|++++.|+.|++
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~------------tg~~~~~i~-~~~~V~SlswspdG--~lLat~s~D~~IrI  193 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIE------------NEKRAFQIN-MPKKLSSLKWNIKG--NLLSGTCVGKHMHI  193 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECC------------CCcEEEEEe-cCCcEEEEEECCCC--CEEEEEecCCEEEE
Confidence            99999998875 5789999999999993            344444444 56789999999885  89999999999999


Q ss_pred             EeCCCCcEEEEEe-cCCcee-----EEEeCCCCCeEEEEccCC----cEEEEeccccccccccccceeEe-ecccccccE
Q 035621          208 WRLLNGTHLSTVT-FPCAIM-----GLALDPTETDFFAAGSDG----LIYKGLLKYQSRQQMHKGQELVT-LANRHDGVV  276 (387)
Q Consensus       208 wd~~~~~~~~~~~-~~~~v~-----~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v  276 (387)
                      ||+++++.+..+. |...+.     ...|++++.+|++++.++    .|++||++...       ..+.. ....+.+.+
T Consensus       194 wD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-------~pl~~~~ld~~~~~L  266 (568)
T PTZ00420        194 IDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-------SALVTMSIDNASAPL  266 (568)
T ss_pred             EECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-------CceEEEEecCCccce
Confidence            9999999988887 444332     234568999999987764    79999998622       11111 112233444


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621          277 VSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       277 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  328 (387)
                      ......++|.++++|+.|+.|++|++..+.+...-......+..+++|.+..
T Consensus       267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence            4444455688999999999999999988754332223344567778777644

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.1e-30  Score=200.78  Aligned_cols=281  Identities=18%  Similarity=0.270  Sum_probs=220.6

Q ss_pred             EEEeeCCCCcEEEEeCCCC------------ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621           10 VILTSSPEGPITAYNPSSG------------AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL   77 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~   77 (387)
                      .|++|+....|.=+++.-.            .++..+..|.+++++++.+.      .++++|+.|-+|+|||+.+...+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~------~~~aSGssDetI~IYDm~k~~ql   76 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSG------PYVASGSSDETIHIYDMRKRKQL   76 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecc------eeEeccCCCCcEEEEeccchhhh
Confidence            4677888777766665311            12556688999999999986      35566999999999999988777


Q ss_pred             cccC-CCCCeeeEEeccCCC--EEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621           78 HNIP-VPEPVAPLATTADGS--YLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        78 ~~~~-~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  154 (387)
                      ..+- |.+.|+++.|.+.-.  .|++|+.||.|.+|+....+++..+++|.+.|+.++.+|.+++.++.+.|+.+++||+
T Consensus        77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL  156 (362)
T KOG0294|consen   77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNL  156 (362)
T ss_pred             cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehh
Confidence            6655 778999999999764  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE  234 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  234 (387)
                      -+            ++.-.... -...-+.+.|+|.+  .+++.++.+ .|-+|.+.+.+....+..+..+.++.|- ++
T Consensus       157 V~------------Gr~a~v~~-L~~~at~v~w~~~G--d~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~  219 (362)
T KOG0294|consen  157 VR------------GRVAFVLN-LKNKATLVSWSPQG--DHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFL-DG  219 (362)
T ss_pred             hc------------Cccceeec-cCCcceeeEEcCCC--CEEEEEecc-EEEEEecccHhHhhhhhccccceeeeec-CC
Confidence            33            22222221 11223348888875  777776654 5899999998888888877778887776 56


Q ss_pred             CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE--ecCCCEEEEEeCCCcEEEEECCCc-----cE
Q 035621          235 TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM--MNEGKNLVSAAEDGSVYIWEIEKR-----QV  307 (387)
Q Consensus       235 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~-----~~  307 (387)
                      ..|++|+.|+.|.+||...         ..+...+.+|..+|.++.+  .|++.+|+|++.||.|+|||++..     ++
T Consensus       220 ~~L~vG~d~~~i~~~D~ds---------~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~  290 (362)
T KOG0294|consen  220 SELLVGGDNEWISLKDTDS---------DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTL  290 (362)
T ss_pred             ceEEEecCCceEEEeccCC---------CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcce
Confidence            7899999999999999886         2333344589999999985  467889999999999999999887     45


Q ss_pred             EEEeecccCCCceeEEE
Q 035621          308 VMVLKNELAGSISEMVI  324 (387)
Q Consensus       308 ~~~~~~~~~~~v~~~~~  324 (387)
                      +..+..  ...++|+..
T Consensus       291 l~e~n~--~~RltCl~~  305 (362)
T KOG0294|consen  291 LAELNT--NVRLTCLRV  305 (362)
T ss_pred             eEEeec--CCccceeee
Confidence            555543  335666543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-30  Score=228.21  Aligned_cols=249  Identities=20%  Similarity=0.335  Sum_probs=196.7

Q ss_pred             eeEecc-CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC--------------------------------C--
Q 035621           30 ILAHFS-GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS--------------------------------S--   74 (387)
Q Consensus        30 ~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~--------------------------------~--   74 (387)
                      ..+.++ .|.+.|+++.|++++.++|+    |+.|+.|+||.+..                                .  
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAs----aGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~  333 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLAS----AGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKIS  333 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeee----cCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccc
Confidence            445666 89999999999997666655    99999999998855                                0  


Q ss_pred             --------------------------CcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCC
Q 035621           75 --------------------------TPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP  127 (387)
Q Consensus        75 --------------------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  127 (387)
                                                +++..+. |...|..+.|+.+ ++|++++.|.+|++|++...++++.|. |...
T Consensus       334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-Hndf  411 (712)
T KOG0283|consen  334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDF  411 (712)
T ss_pred             ccccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCe
Confidence                                      0000111 4456788899876 489999999999999999999999995 9999


Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEE
Q 035621          128 VSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCK  206 (387)
Q Consensus       128 v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~  206 (387)
                      |+|++|+| |.+++++|+-||.++||++             ....+..+..-..-|++++|.|++  +..+.|+.+|.++
T Consensus       412 VTcVaFnPvDDryFiSGSLD~KvRiWsI-------------~d~~Vv~W~Dl~~lITAvcy~PdG--k~avIGt~~G~C~  476 (712)
T KOG0283|consen  412 VTCVAFNPVDDRYFISGSLDGKVRLWSI-------------SDKKVVDWNDLRDLITAVCYSPDG--KGAVIGTFNGYCR  476 (712)
T ss_pred             eEEEEecccCCCcEeecccccceEEeec-------------CcCeeEeehhhhhhheeEEeccCC--ceEEEEEeccEEE
Confidence            99999999 8899999999999999999             233444444555899999999995  9999999999999


Q ss_pred             EEeCCCCcEEEEEe---c------CCceeEEEeCCCCC-eEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621          207 FWRLLNGTHLSTVT---F------PCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV  276 (387)
Q Consensus       207 iwd~~~~~~~~~~~---~------~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  276 (387)
                      +|+....+....+.   +      ...|+.+.|.|... .+++.++|..|+|+|.+.......+++.       .....-
T Consensus       477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~-------~n~~SQ  549 (712)
T KOG0283|consen  477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF-------RNTSSQ  549 (712)
T ss_pred             EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc-------ccCCcc
Confidence            99999887765553   1      23799999998654 5999999999999999764433332221       112234


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621          277 VSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       277 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  306 (387)
                      ....|+.||++|+++++|..|++|+.....
T Consensus       550 ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  550 ISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             eeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            677899999999999999999999985443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2.3e-30  Score=213.38  Aligned_cols=273  Identities=19%  Similarity=0.235  Sum_probs=221.1

Q ss_pred             ccccCCCc-EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNE-VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++|||... -+|+.+. -.+.||+..+......+......+.++.|-.++.+++.    |...|.|+++|..+...++.+
T Consensus        32 l~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~Llaa----GD~sG~V~vfD~k~r~iLR~~  106 (487)
T KOG0310|consen   32 LCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAA----GDESGHVKVFDMKSRVILRQL  106 (487)
T ss_pred             EecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEc----cCCcCcEEEeccccHHHHHHH
Confidence            67888653 3444443 47999999988888888888888999999997766655    999999999997665566666


Q ss_pred             C-CCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCcc
Q 035621           81 P-VPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD-GSLLISGGDDGVIATVPIFQL  157 (387)
Q Consensus        81 ~-~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~  157 (387)
                      . |..++....|+|+ +..+++|+.|+.+++||+.+......+.+|+..|+|.+|+|. +.++++|+.||.|++||++..
T Consensus       107 ~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~  186 (487)
T KOG0310|consen  107 YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL  186 (487)
T ss_pred             hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence            5 7889999999995 456778888899999999998876688999999999999994 558999999999999999531


Q ss_pred             cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEEe-cCCceeEEEeCCCCC
Q 035621          158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTVT-FPCAIMGLALDPTET  235 (387)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~  235 (387)
                                 ...+.+ ..|..+|..+.+.|.+  ..+++++. ..+++||+-+|. .+.... |...|+|+++..++.
T Consensus       187 -----------~~~v~e-lnhg~pVe~vl~lpsg--s~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~  251 (487)
T KOG0310|consen  187 -----------TSRVVE-LNHGCPVESVLALPSG--SLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST  251 (487)
T ss_pred             -----------CceeEE-ecCCCceeeEEEcCCC--CEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCc
Confidence                       133344 4689999999999885  88888874 579999999654 444444 889999999999999


Q ss_pred             eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      .|++++-|+.+++||+.+.        +....+  .-.++|.+++.+|+++.++.|..||.+.+=+...
T Consensus       252 rLlS~sLD~~VKVfd~t~~--------Kvv~s~--~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  252 RLLSGSLDRHVKVFDTTNY--------KVVHSW--KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             eEeecccccceEEEEccce--------EEEEee--ecccceeeEEecCCCceEEEecccceeeeehhhc
Confidence            9999999999999997652        222222  4678999999999999999999999887764433

>PTZ00420 coronin; Provisional

Probab=99.98  E-value=1.8e-29  Score=224.41  Aligned_cols=248  Identities=14%  Similarity=0.131  Sum_probs=189.6

Q ss_pred             eCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc--------cccc-CCCC
Q 035621           14 SSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP--------LHNI-PVPE   84 (387)
Q Consensus        14 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~--------~~~~-~~~~   84 (387)
                      |+.++.|++|+......+..+.+|.++|.+++|+|..   ...+++++.|+.|++||+.++..        +..+ .|..
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~---~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCF---SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCC---CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence            5677889999988777888999999999999999941   23455699999999999976432        1222 3678


Q ss_pred             CeeeEEeccCCCE-EEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621           85 PVAPLATTADGSY-LFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        85 ~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      .|.+++|+|++.. |++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+         
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~---------  196 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDP---------  196 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEEC---------
Confidence            8999999998875 5688999999999999998877775 5678999999999999999999999999999         


Q ss_pred             CCCCCccceEeeeccCCCeEEEEEee---CCCCceEEEEeCCC----cEEEEeCCC-CcEEEEEecCCc---eeEEEeCC
Q 035621          164 DKNPDDLMLQKFVAHNDSVTAITCCI---GSFNSIIISCSMDC----TCKFWRLLN-GTHLSTVTFPCA---IMGLALDP  232 (387)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~l~s~~~d~----~i~iwd~~~-~~~~~~~~~~~~---v~~~~~~~  232 (387)
                         .....+..+.+|.+.+....+..   .+++.++++++.|+    +|++||+++ .+++..+.+...   +......+
T Consensus       197 ---Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~  273 (568)
T PTZ00420        197 ---RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDES  273 (568)
T ss_pred             ---CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCC
Confidence               45667778889988765444322   12347888887764    799999995 566666654432   23333455


Q ss_pred             CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC
Q 035621          233 TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG  285 (387)
Q Consensus       233 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  285 (387)
                      ++.++++|+.|+.|++|++..+..      ..+..  ..+..++.+++|.|..
T Consensus       274 tg~l~lsGkGD~tIr~~e~~~~~~------~~l~~--~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        274 TGLIYLIGKGDGNCRYYQHSLGSI------RKVNE--YKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             CCCEEEEEECCCeEEEEEccCCcE------Eeecc--cccCCCccceEEcccc
Confidence            688899999999999999976421      11111  1366788899999964

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=1.5e-31  Score=212.52  Aligned_cols=265  Identities=17%  Similarity=0.204  Sum_probs=223.4

Q ss_pred             eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEE
Q 035621           31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYA  109 (387)
Q Consensus        31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i  109 (387)
                      +..+.+|.+.|.+++-+|+.   .+.+++|+.||.|++||+...++...++ |.+.|..+++..  ..+++++.|.+|+.
T Consensus        59 v~~L~gHrdGV~~lakhp~~---ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNK---LSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ  133 (433)
T ss_pred             hhhccccccccchhhcCcch---hhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence            45678999999999999963   3567789999999999999999999888 667999999988  56888889999999


Q ss_pred             EeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee
Q 035621          110 ISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI  189 (387)
Q Consensus       110 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  189 (387)
                      |-+.. .+.+++.+ ...+..+.-+..+..+++++.  .|.|||.            ....++..+.-....|.++.|+|
T Consensus       134 wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~------------~R~~Pv~smswG~Dti~svkfNp  197 (433)
T KOG0268|consen  134 WKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDE------------QRDNPVSSMSWGADSISSVKFNP  197 (433)
T ss_pred             eeccC-Ccceeeec-cccccccccccccccccccCc--eeeeccc------------ccCCccceeecCCCceeEEecCC
Confidence            99854 46666653 456777777777788898886  4889999            56678888888888999999999


Q ss_pred             CCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeec
Q 035621          190 GSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA  269 (387)
Q Consensus       190 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  269 (387)
                      .. ..+|++|+.|+.|.+||++++++++.+......+.++|+|.+-.+.+|+.|.+++.||++.        ........
T Consensus       198 vE-TsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~--------l~~p~~v~  268 (433)
T KOG0268|consen  198 VE-TSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRN--------LSRPLNVH  268 (433)
T ss_pred             Cc-chheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhh--------hcccchhh
Confidence            86 5789999999999999999999999999999999999999777888899999999999998        45556666


Q ss_pred             ccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621          270 NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       270 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  325 (387)
                      .+|.+.|.++.|||.|+-|++|+.|.+|+||.+..+.-...+.......|.++.++
T Consensus       269 ~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S  324 (433)
T KOG0268|consen  269 KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYS  324 (433)
T ss_pred             cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEe
Confidence            78999999999999999999999999999999998866555544444456666444

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=1.9e-30  Score=223.28  Aligned_cols=307  Identities=15%  Similarity=0.201  Sum_probs=244.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCcee---EeccCCCCCceeEEEcCc-------cceeeeccccCCCCCeEEEEEc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAIL---AHFSGSRSPRRGLTFAGK-------PFIAASHISPTTGSGSVHLYNL   71 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~d~~v~vw~~   71 (387)
                      +.|+|....|..-..|..++|||+.+-..+   ..+--|...|+.+..-|-       ..+....+.+++.|++|++|++
T Consensus       330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l  409 (1080)
T KOG1408|consen  330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDL  409 (1080)
T ss_pred             EEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeec
Confidence            468888888888889999999999764332   333458888888876551       1223345778999999999998


Q ss_pred             cCCCc--c-----------c-------------------------ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC
Q 035621           72 WSSTP--L-----------H-------------------------NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP  113 (387)
Q Consensus        72 ~~~~~--~-----------~-------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  113 (387)
                      ..+.-  +           .                         .+.....+.+++.+|+|++||+|..-|++++|++.
T Consensus       410 ~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq  489 (1080)
T KOG1408|consen  410 AFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQ  489 (1080)
T ss_pred             ccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEeh
Confidence            65210  0           0                         00012358899999999999999999999999999


Q ss_pred             CCceeEEccCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeC
Q 035621          114 KGDILRSFSAHDKPVSCLKISP---DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIG  190 (387)
Q Consensus       114 ~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  190 (387)
                      +.+....+.+|...|.|+.|+.   ..++|++++.|+.|.+||..           .+..+++++.+|...|+++.|.-.
T Consensus       490 ~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~-----------rny~l~qtld~HSssITsvKFa~~  558 (1080)
T KOG1408|consen  490 ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK-----------RNYDLVQTLDGHSSSITSVKFACN  558 (1080)
T ss_pred             hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc-----------cccchhhhhcccccceeEEEEeec
Confidence            9999999999999999999986   34689999999999999995           355677889999999999999887


Q ss_pred             CCCceEEEEeCCCcEEEEeCCCCcEEEEEe------cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccce
Q 035621          191 SFNSIIISCSMDCTCKFWRLLNGTHLSTVT------FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQE  264 (387)
Q Consensus       191 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  264 (387)
                      +-+..+++++.|..|.+--.+....-..+.      .+..+..++..|..+++++++.|..|+||++..+.....+++  
T Consensus       559 gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg--  636 (1080)
T KOG1408|consen  559 GLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG--  636 (1080)
T ss_pred             CCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc--
Confidence            766889999999987654333221112221      246789999999999999999999999999998654443333  


Q ss_pred             eEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          265 LVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       265 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                          ..+|.+....+...|.|.||++.+.|.++.++|+.+|+++.++.+|.+ .|+++-|.+
T Consensus       637 ----s~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE-~VTG~kF~n  693 (1080)
T KOG1408|consen  637 ----SRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE-AVTGVKFLN  693 (1080)
T ss_pred             ----cccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch-heeeeeecc
Confidence                236778899999999999999999999999999999999999999966 999996654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=1.8e-29  Score=192.14  Aligned_cols=266  Identities=14%  Similarity=0.152  Sum_probs=215.8

Q ss_pred             EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC---CCCCeeeEEecc-CCCEEEEecCCCcE
Q 035621           32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP---VPEPVAPLATTA-DGSYLFTGGLSGNV  107 (387)
Q Consensus        32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~dg~i  107 (387)
                      +.+++|...+.+++|+.+    +..+++++.|+++.+|+++..+......   |.+.|-.++|+| ....+++++.|.+|
T Consensus        14 r~~~~~~~~v~Sv~wn~~----g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~i   89 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCD----GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTI   89 (313)
T ss_pred             HHhhhhhhcceEEEEccc----CceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceE
Confidence            567789999999999984    4556669999999999998775544433   667888899988 56789999999999


Q ss_pred             EEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621          108 YAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC  187 (387)
Q Consensus       108 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  187 (387)
                      ++||.+.++++..+....+. .-+.|+|+|.+++.++.|..|.+.|.++            .+.... ......+.-++|
T Consensus        90 r~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~------------~~~~~~-~~~~~e~ne~~w  155 (313)
T KOG1407|consen   90 RIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDART------------YKIVNE-EQFKFEVNEISW  155 (313)
T ss_pred             EEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecc------------cceeeh-hcccceeeeeee
Confidence            99999999999888754444 4578999999999999999999999943            222222 223445667888


Q ss_pred             eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeE
Q 035621          188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELV  266 (387)
Q Consensus       188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  266 (387)
                      +.+  +++++.....|.|.|......+++..++ |+....|+.|+|+|+++++|+.|-.+.+||+..         -...
T Consensus       156 ~~~--nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E---------LiC~  224 (313)
T KOG1407|consen  156 NNS--NDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE---------LICE  224 (313)
T ss_pred             cCC--CCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH---------hhhh
Confidence            744  3666666667999999999999999998 889999999999999999999999999999986         2233


Q ss_pred             eecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621          267 TLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       267 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  328 (387)
                      +.+..+.=+|..+.|+.||++||+|++|..|-|=++++|..+..++.  .++...+++-|..
T Consensus       225 R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~--~~~t~tVAWHPk~  284 (313)
T KOG1407|consen  225 RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC--EGPTFTVAWHPKR  284 (313)
T ss_pred             eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec--cCCceeEEecCCC
Confidence            33446788999999999999999999999999999999999999874  3456666665433

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.9e-31  Score=223.94  Aligned_cols=273  Identities=18%  Similarity=0.329  Sum_probs=225.6

Q ss_pred             CCCcEEEeeCCCCcEEEEeCCCCc------eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC--Ccc
Q 035621            6 PCNEVILTSSPEGPITAYNPSSGA------ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--TPL   77 (387)
Q Consensus         6 ~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~~~   77 (387)
                      |.+++|.+|+.||.|++|+.....      .+..++.|...|+.++...++.    .+++++.|-+|++|+...+  -+.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~----tlIS~SsDtTVK~W~~~~~~~~c~  110 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK----TLISASSDTTVKVWNAHKDNTFCM  110 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC----ceEEecCCceEEEeecccCcchhH
Confidence            467789999999999999985332      3667889999999999887443    4455899999999999877  455


Q ss_pred             cccC-CCCCeeeEEe-ccCCCEEEEecCCCcEEEEeCCCC--ceeE--------Ecc-CCCCCeEEEEEcCCCCEEEEEe
Q 035621           78 HNIP-VPEPVAPLAT-TADGSYLFTGGLSGNVYAISVPKG--DILR--------SFS-AHDKPVSCLKISPDGSLLISGG  144 (387)
Q Consensus        78 ~~~~-~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~--~~~~--------~~~-~~~~~v~~~~~~~~~~~l~~~~  144 (387)
                      .++. |.+-|.|+++ .++...+|+|+-|+.|.+||++++  +.+.        .+. ++..+|.+++.++.|..+++|+
T Consensus       111 stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGg  190 (735)
T KOG0308|consen  111 STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGG  190 (735)
T ss_pred             hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecC
Confidence            5555 7789999999 778889999999999999999877  2222        223 7888999999999999999999


Q ss_pred             CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCC
Q 035621          145 DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPC  223 (387)
Q Consensus       145 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~  223 (387)
                      ..+.+++||.            .....+..+.+|...|..+..++++  ..+++++.||+|++||+...+++.++. |..
T Consensus       191 tek~lr~wDp------------rt~~kimkLrGHTdNVr~ll~~dDG--t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e  256 (735)
T KOG0308|consen  191 TEKDLRLWDP------------RTCKKIMKLRGHTDNVRVLLVNDDG--TRLLSASSDGTIRLWDLGQQRCLATYIVHKE  256 (735)
T ss_pred             cccceEEecc------------ccccceeeeeccccceEEEEEcCCC--CeEeecCCCceEEeeeccccceeeeEEeccC
Confidence            9999999999            5777888889999999999998885  999999999999999999999999988 777


Q ss_pred             ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          224 AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       224 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      .+.++..+|+-..+++|+.||.|+.=|+++...        .. .......+|..+..+...+-+-+++.|+.|+-|...
T Consensus       257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~--------~t-lick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK--------ST-LICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             ceEEEeeCCCcceEEecCCCCcEEecccCCchh--------he-EeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence            899999999999999999999999999987421        11 112345567777776555555777889999999765


Q ss_pred             Cc
Q 035621          304 KR  305 (387)
Q Consensus       304 ~~  305 (387)
                      -.
T Consensus       328 ~~  329 (735)
T KOG0308|consen  328 PD  329 (735)
T ss_pred             cc
Confidence            43

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=7.8e-30  Score=198.07  Aligned_cols=262  Identities=13%  Similarity=0.132  Sum_probs=204.5

Q ss_pred             ccccC-CCcEEEeeCCCCcEEEEeCCC-Ccee-EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            2 LHHLP-CNEVILTSSPEGPITAYNPSS-GAIL-AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         2 l~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      |+||| ...+++.|+.||+|++|+++. |... +....|.++|.+++|+.++    +.+++++.|+.+++||+.+++...
T Consensus        33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg----skVf~g~~Dk~~k~wDL~S~Q~~~  108 (347)
T KOG0647|consen   33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG----SKVFSGGCDKQAKLWDLASGQVSQ  108 (347)
T ss_pred             eEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC----ceEEeeccCCceEEEEccCCCeee
Confidence            78999 566777999999999999986 3433 3446799999999999954    555569999999999999998877


Q ss_pred             ccCCCCCeeeEEeccCCC--EEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621           79 NIPVPEPVAPLATTADGS--YLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      .-.|..+|.++.|-+...  .|++|+.|.+|+.||++...++.++.- .+.+.++..  ...+++++..++.|.+|++++
T Consensus       109 v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~r~i~vynL~n  185 (347)
T KOG0647|consen  109 VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAERHIAVYNLEN  185 (347)
T ss_pred             eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecCCcEEEEEcCC
Confidence            778999999999988665  899999999999999999998888763 456776655  345788999999999999954


Q ss_pred             ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--EEEEEe-cC---------Cc
Q 035621          157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT--HLSTVT-FP---------CA  224 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~-~~---------~~  224 (387)
                      ....          .......-.-.++++++.++.  ...+.|+.+|.+.|..+..+.  .-..|+ |.         ..
T Consensus       186 ~~te----------~k~~~SpLk~Q~R~va~f~d~--~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa  253 (347)
T KOG0647|consen  186 PPTE----------FKRIESPLKWQTRCVACFQDK--DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA  253 (347)
T ss_pred             Ccch----------hhhhcCcccceeeEEEEEecC--CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence            2111          111111223457899998886  455889999999999998763  333343 22         15


Q ss_pred             eeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621          225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA  291 (387)
Q Consensus       225 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  291 (387)
                      |++++|+|.-..|++++.||.+.+||-....        .+. ....|..+|++.+|+.+|.++|-+
T Consensus       254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~--------kLk-~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDART--------KLK-TSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ecceEeecccceEEEecCCceEEEecchhhh--------hhh-ccCcCCCccceeEecCCCCEEEEE
Confidence            7899999999999999999999999987622        222 223689999999999999988854

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=7.2e-31  Score=198.60  Aligned_cols=282  Identities=16%  Similarity=0.200  Sum_probs=236.3

Q ss_pred             EeccCCCCCceeEEEcC---ccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621           32 AHFSGSRSPRRGLTFAG---KPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNV  107 (387)
Q Consensus        32 ~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i  107 (387)
                      .+-.+|..||..++|+|   ++.+    +++++.|+.-.+-+-++|..+.++. |.+.|...++..+....++++.|=+-
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~f----lisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadfta   83 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYF----LISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTA   83 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceE----EEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchh
Confidence            34578999999999996   4444    4458999999999989999999888 77899999999988888999999999


Q ss_pred             EEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621          108 YAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC  187 (387)
Q Consensus       108 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  187 (387)
                      ++||.-+|..++.+. |+.-|.+++|+.|.++|++|+.+..+++||+.+           ...+...+.+|.+.|..+.|
T Consensus        84 kvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~-----------p~App~E~~ghtg~Ir~v~w  151 (334)
T KOG0278|consen   84 KVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR-----------PKAPPKEISGHTGGIRTVLW  151 (334)
T ss_pred             hhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccC-----------CCCCchhhcCCCCcceeEEE
Confidence            999999999999985 889999999999999999999999999999953           34466788899999999999


Q ss_pred             eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEe
Q 035621          188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVT  267 (387)
Q Consensus       188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  267 (387)
                      +...  +.+++++.|++||+||.+++..++++..+.+|+++.++++|++|.++ ..+.|.+||..+..        .+..
T Consensus       152 c~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~--------~lKs  220 (334)
T KOG0278|consen  152 CHED--KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFG--------LLKS  220 (334)
T ss_pred             eccC--ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEecccccc--------ceee
Confidence            9874  78888899999999999999999999999999999999999877665 45689999998732        2222


Q ss_pred             ecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC--------CCceeeEEEec
Q 035621          268 LANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI--------GGSRGCGVVKT  339 (387)
Q Consensus       268 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~  339 (387)
                      .  .-...|.+...+|+...+++|++|+.++.||..+++.+..+...+.++|.++.|+|+.        ++...+|....
T Consensus       221 ~--k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  221 Y--KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             c--cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence            1  2345688999999999999999999999999999999998744446799999887643        23346666555


Q ss_pred             CCC
Q 035621          340 GKA  342 (387)
Q Consensus       340 ~~~  342 (387)
                      ++.
T Consensus       299 ~~~  301 (334)
T KOG0278|consen  299 GKT  301 (334)
T ss_pred             CCc
Confidence            554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=5.8e-28  Score=206.47  Aligned_cols=286  Identities=13%  Similarity=0.184  Sum_probs=215.0

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCee
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVA   87 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~   87 (387)
                      ++++++++.|+.|++||+.+++.+..+..+.. +.+++|+|++...   +++++.++.|++||..+++....+.....+.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l---~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~   76 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLL---YVCASDSDTIQVIDLATGEVIGTLPSGPDPE   76 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEE---EEEECCCCeEEEEECCCCcEEEeccCCCCcc
Confidence            46789999999999999999998888876544 6789999965432   1236788999999999988777666555567


Q ss_pred             eEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEeCCcccccCCCCC
Q 035621           88 PLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG-VIATVPIFQLVDEHTDDK  165 (387)
Q Consensus        88 ~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~  165 (387)
                      .++|+|+++.++++ ..++.+++||+.+.+.+..+.. ...+.+++|+|+++++++++.++ .+..||..          
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~----------  145 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTK----------  145 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCC----------
Confidence            88999999977655 4688999999998887777653 34568899999999999988775 46677872          


Q ss_pred             CCCccceEeeeccCCCeEEEEEeeCCCCceE-EEEeCCCcEEEEeCCCCcEEEEEecC--------CceeEEEeCCCCCe
Q 035621          166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSII-ISCSMDCTCKFWRLLNGTHLSTVTFP--------CAIMGLALDPTETD  236 (387)
Q Consensus       166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~  236 (387)
                        ......... .......++|++++  +++ +++..++.|++||+.+++.+..+...        .....++|+|++++
T Consensus       146 --~~~~~~~~~-~~~~~~~~~~s~dg--~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~  220 (300)
T TIGR03866       146 --TYEIVDNVL-VDQRPRFAEFTADG--KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT  220 (300)
T ss_pred             --CCeEEEEEE-cCCCccEEEECCCC--CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCE
Confidence              232333222 22345678888875  655 45556999999999999887766521        12456889999998


Q ss_pred             EEEE-ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE-eCCCcEEEEECCCccEEEEeecc
Q 035621          237 FFAA-GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA-AEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       237 l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      ++++ +.++.+.+||..+..        .....  .+...+.+++|+|+|++|+++ +.+|.|++||+.+++++..++..
T Consensus       221 ~~~~~~~~~~i~v~d~~~~~--------~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       221 AFVALGPANRVAVVDAKTYE--------VLDYL--LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG  290 (300)
T ss_pred             EEEEcCCCCeEEEEECCCCc--------EEEEE--EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence            6664 456789999987632        11111  234578999999999999876 56899999999999999999753


Q ss_pred             cCCCceeEEEE
Q 035621          315 LAGSISEMVIA  325 (387)
Q Consensus       315 ~~~~v~~~~~~  325 (387)
                        +.+++++|.
T Consensus       291 --~~~~~~~~~  299 (300)
T TIGR03866       291 --RLPWGVVVR  299 (300)
T ss_pred             --cccceeEeC
Confidence              567887764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=2.4e-29  Score=196.02  Aligned_cols=262  Identities=16%  Similarity=0.221  Sum_probs=208.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      +.|+|.+..|++++.||++++||+........++ |..++.+++|.++.     .+++|+.||.|+.+|+++++....-.
T Consensus        19 v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~-----~~~~G~~dg~vr~~Dln~~~~~~igt   92 (323)
T KOG1036|consen   19 VKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADES-----TIVTGGLDGQVRRYDLNTGNEDQIGT   92 (323)
T ss_pred             EEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCc-----eEEEeccCceEEEEEecCCcceeecc
Confidence            5688999999999999999999998886666665 99999999999843     34458999999999999999888888


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                      |.+++.|+.+++....+++|+.|++|++||.+.......+.. ...|.++..  .++.|++|+.|..+.+||++++....
T Consensus        93 h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~  169 (323)
T KOG1036|consen   93 HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF  169 (323)
T ss_pred             CCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchh
Confidence            999999999999888999999999999999987655555543 347888877  46789999999999999997653321


Q ss_pred             CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC----cEEEEEe-cC---------CceeE
Q 035621          162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG----THLSTVT-FP---------CAIMG  227 (387)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~-~~---------~~v~~  227 (387)
                                ...-..-.-.+.++++.|+.  .=++.++.||.|.+=.+...    +....|+ |.         -+|++
T Consensus       170 ----------q~reS~lkyqtR~v~~~pn~--eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa  237 (323)
T KOG1036|consen  170 ----------QRRESSLKYQTRCVALVPNG--EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA  237 (323)
T ss_pred             ----------hhccccceeEEEEEEEecCC--CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence                      11122234567899999964  66788899999988666654    2333343 21         37999


Q ss_pred             EEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC
Q 035621          228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE  293 (387)
Q Consensus       228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  293 (387)
                      ++|+|-...+++|+.||.|.+||+.+..        .+..+. .....|.+++|+.+|..||.++.
T Consensus       238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~rK--------rl~q~~-~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  238 IAFHPIHGTFATGGSDGIVNIWDLFNRK--------RLKQLA-KYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEeccccceEEecCCCceEEEccCcchh--------hhhhcc-CCCCceEEEEeccCCCeEEEEec
Confidence            9999999999999999999999998733        333332 34667999999999999999864

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=2.7e-30  Score=214.37  Aligned_cols=276  Identities=15%  Similarity=0.152  Sum_probs=206.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCC----ceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSG----AILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP   76 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~   76 (387)
                      |++.|.|.+|++|+.|..|++||++..    +..+.+ ......|++++|++    ....++..+.....+|+|-...+.
T Consensus       173 l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~----Tg~~iLvvsg~aqakl~DRdG~~~  248 (641)
T KOG0772|consen  173 LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV----TGDQILVVSGSAQAKLLDRDGFEI  248 (641)
T ss_pred             eeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC----CCCeEEEEecCcceeEEccCCcee
Confidence            578899999999999999999998633    222233 23445699999999    333444466778889998654333


Q ss_pred             ccccC-------------CCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCc-eeEEcc-----CCCCCeEEEEEcCC
Q 035621           77 LHNIP-------------VPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGD-ILRSFS-----AHDKPVSCLKISPD  136 (387)
Q Consensus        77 ~~~~~-------------~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~-----~~~~~v~~~~~~~~  136 (387)
                      ....+             |-..++|.+|+|.. ..+++++.||++++||+...+ ....++     +..-+++.++|+|+
T Consensus       249 ~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd  328 (641)
T KOG0772|consen  249 VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD  328 (641)
T ss_pred             eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC
Confidence            32222             45678999999964 578899999999999997653 222332     33457899999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC--CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc
Q 035621          137 GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND--SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT  214 (387)
Q Consensus       137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  214 (387)
                      ++++++|+.||+|.+|+.+..         ........-.+|..  .|++|.|++++  ++|++-+.|+++++||+++.+
T Consensus       329 g~~iAagc~DGSIQ~W~~~~~---------~v~p~~~vk~AH~~g~~Itsi~FS~dg--~~LlSRg~D~tLKvWDLrq~k  397 (641)
T KOG0772|consen  329 GKLIAAGCLDGSIQIWDKGSR---------TVRPVMKVKDAHLPGQDITSISFSYDG--NYLLSRGFDDTLKVWDLRQFK  397 (641)
T ss_pred             cchhhhcccCCceeeeecCCc---------ccccceEeeeccCCCCceeEEEecccc--chhhhccCCCceeeeeccccc
Confidence            999999999999999997432         11223334457776  99999999985  999999999999999999764


Q ss_pred             -EEEEEe---cCCceeEEEeCCCCCeEEEEcc------CCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621          215 -HLSTVT---FPCAIMGLALDPTETDFFAAGS------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE  284 (387)
Q Consensus       215 -~~~~~~---~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  284 (387)
                       ++....   ...+-+.++|+|+.+.|++|+.      .|.+++||..+..        .+..+ .-....|..+.|+|.
T Consensus       398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d--------~v~ki-~i~~aSvv~~~Whpk  468 (641)
T KOG0772|consen  398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD--------TVYKI-DISTASVVRCLWHPK  468 (641)
T ss_pred             cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee--------eEEEe-cCCCceEEEEeecch
Confidence             444433   3456788999999999999864      5679999988732        22222 234678999999999


Q ss_pred             CCEEEEEeCCCcEEEEE
Q 035621          285 GKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       285 ~~~l~s~~~dg~i~iwd  301 (387)
                      -+.|..|+.||++++|=
T Consensus       469 LNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  469 LNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             hhheeeecCCCceEEEE
Confidence            99999999999999863

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=3.3e-29  Score=221.97  Aligned_cols=273  Identities=20%  Similarity=0.321  Sum_probs=231.6

Q ss_pred             CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc-cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC
Q 035621           37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK  114 (387)
Q Consensus        37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  114 (387)
                      +...+.+..|.++      .+.+++.++++++|+..++..+.. +. |.+.|.++++..-+.++++|+.|.++++||..+
T Consensus       207 ~~~~~~~~q~~~~------~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLHDG------FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             CcchhhhheeecC------eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence            4455777777743      233478999999999999987776 54 788999999998788999999999999999999


Q ss_pred             CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCc
Q 035621          115 GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS  194 (387)
Q Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  194 (387)
                      |++.+.+.+|...+.++...  ...+++|+.|.+|++|++            +++..+..+.+|.++|.++.+.    +.
T Consensus       281 g~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v------------~n~~~l~l~~~h~~~V~~v~~~----~~  342 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDV------------TNGACLNLLRGHTGPVNCVQLD----EP  342 (537)
T ss_pred             CcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEec------------cCcceEEEeccccccEEEEEec----CC
Confidence            99999999999999999885  457888999999999999            6778888888899999999886    37


Q ss_pred             eEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeeccccc
Q 035621          195 IIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHD  273 (387)
Q Consensus       195 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  273 (387)
                      ++++|+.|++|++||+.++++++.+. |...|.++.+.+. ..+++|+.|+.|++||+....        .....+.+|.
T Consensus       343 ~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--------~c~~tl~~h~  413 (537)
T KOG0274|consen  343 LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--------KCIHTLQGHT  413 (537)
T ss_pred             EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--------hhhhhhcCCc
Confidence            99999999999999999999999998 7889999988766 899999999999999999831        3444556888


Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeE------EEEecCCCceeeEEEecCCCCC
Q 035621          274 GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEM------VIATGIGGSRGCGVVKTGKAGN  344 (387)
Q Consensus       274 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~~~~~~~~~~~~~~~  344 (387)
                      .-+..+.+  .+++|++++.|++|++||..++++++.+.+++.+.|+.+      .++.+.+.....|...++....
T Consensus       414 ~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  414 SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             cccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence            88877766  567999999999999999999999999998544566655      4456677777888888777644

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.7e-29  Score=227.33  Aligned_cols=281  Identities=13%  Similarity=0.110  Sum_probs=221.6

Q ss_pred             ccccCCCcEEEeeC--CCCcEEEEeCCC------------CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEE
Q 035621            2 LHHLPCNEVILTSS--PEGPITAYNPSS------------GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVH   67 (387)
Q Consensus         2 l~~s~~~~~l~~~~--~dg~i~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~   67 (387)
                      ++.+|||..+|||+  .||.+.||+.+.            .+.+.+...|.+.|+|+.|+|++.++++    |+.|+.|.
T Consensus        19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs----GSDD~~v~   94 (942)
T KOG0973|consen   19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS----GSDDRLVM   94 (942)
T ss_pred             EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee----ccCcceEE
Confidence            46799999999999  999999998642            2345566789999999999996655554    99999999


Q ss_pred             EEEccC----------C--------Cccccc-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCe
Q 035621           68 LYNLWS----------S--------TPLHNI-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPV  128 (387)
Q Consensus        68 vw~~~~----------~--------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v  128 (387)
                      +|....          |        +....+ .|...|..++|+|++.+|++++.|++|.+||..+.+.+..+++|.+.|
T Consensus        95 iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~V  174 (942)
T KOG0973|consen   95 IWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLV  174 (942)
T ss_pred             EeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccc
Confidence            999873          0        011122 277899999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc------CCCeEEEEEeeCCCCceEEEEeC-
Q 035621          129 SCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH------NDSVTAITCCIGSFNSIIISCSM-  201 (387)
Q Consensus       129 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~l~s~~~-  201 (387)
                      ..+.|.|-|++|++-+.|++|++|++.+            ....+.+..+      ......+.|+|++  .+|++.-. 
T Consensus       175 KGvs~DP~Gky~ASqsdDrtikvwrt~d------------w~i~k~It~pf~~~~~~T~f~RlSWSPDG--~~las~nA~  240 (942)
T KOG0973|consen  175 KGVSWDPIGKYFASQSDDRTLKVWRTSD------------WGIEKSITKPFEESPLTTFFLRLSWSPDG--HHLASPNAV  240 (942)
T ss_pred             cceEECCccCeeeeecCCceEEEEEccc------------ceeeEeeccchhhCCCcceeeecccCCCc--Ceecchhhc
Confidence            9999999999999999999999999732            2223333222      2356788999985  88887643 


Q ss_pred             ---CCcEEEEeCCCCcEEEEE-ecCCceeEEEeCCC-----CC------------eEEEEccCCcEEEEecccccccccc
Q 035621          202 ---DCTCKFWRLLNGTHLSTV-TFPCAIMGLALDPT-----ET------------DFFAAGSDGLIYKGLLKYQSRQQMH  260 (387)
Q Consensus       202 ---d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~-----~~------------~l~~~~~dg~i~i~d~~~~~~~~~~  260 (387)
                         -.++.|.+-.+.+.-..+ .|..++.++.|+|.     .+            .+|+|+.|+.|.||.....      
T Consensus       241 n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~------  314 (942)
T KOG0973|consen  241 NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP------  314 (942)
T ss_pred             cCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC------
Confidence               246788877666644444 48889999999972     11            5778899999999998652      


Q ss_pred             ccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621          261 KGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV  308 (387)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  308 (387)
                        .++.....-....|..++|+|||..|+.++.||+|.+..++..++=
T Consensus       315 --RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG  360 (942)
T KOG0973|consen  315 --RPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELG  360 (942)
T ss_pred             --CchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhC
Confidence              2222222234678999999999999999999999999999876543

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=9.8e-28  Score=179.27  Aligned_cols=278  Identities=13%  Similarity=0.182  Sum_probs=217.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCC------CCc---------eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeE
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPS------SGA---------ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSV   66 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~------~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v   66 (387)
                      ++|+|.|.+.++|+...+.+|....      .+.         ..+.-+.|.+.|.|.+|+|.+.    .+++|+.|.+|
T Consensus        38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge----liatgsndk~i  113 (350)
T KOG0641|consen   38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE----LIATGSNDKTI  113 (350)
T ss_pred             EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC----eEEecCCCceE
Confidence            6899999999999999999887542      111         1223356889999999999554    45569999999


Q ss_pred             EEEEccCCCc------ccccCCCCCeeeEEeccC----CCEEEEec-CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC
Q 035621           67 HLYNLWSSTP------LHNIPVPEPVAPLATTAD----GSYLFTGG-LSGNVYAISVPKGDILRSFSAHDKPVSCLKISP  135 (387)
Q Consensus        67 ~vw~~~~~~~------~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  135 (387)
                      ++...+...+      +..-.|.+.|..++|..+    +..|++++ .|..|++-|...|+..+.+.+|.+.|.++- +-
T Consensus       114 k~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-sw  192 (350)
T KOG0641|consen  114 KVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SW  192 (350)
T ss_pred             EEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-Ee
Confidence            9987654322      222237789999999653    45677665 466788889999999999999999998873 33


Q ss_pred             CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee--c-----cCCCeEEEEEeeCCCCceEEEEeCCCcEEEE
Q 035621          136 DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV--A-----HNDSVTAITCCIGSFNSIIISCSMDCTCKFW  208 (387)
Q Consensus       136 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iw  208 (387)
                      ++-++++|+.|.+|++||++-            ..++..+.  .     ..+.|.++++.|.+  ++|++|-.|....+|
T Consensus       193 n~~m~~sgsqdktirfwdlrv------------~~~v~~l~~~~~~~glessavaav~vdpsg--rll~sg~~dssc~ly  258 (350)
T KOG0641|consen  193 NGAMFASGSQDKTIRFWDLRV------------NSCVNTLDNDFHDGGLESSAVAAVAVDPSG--RLLASGHADSSCMLY  258 (350)
T ss_pred             cCcEEEccCCCceEEEEeeec------------cceeeeccCcccCCCcccceeEEEEECCCc--ceeeeccCCCceEEE
Confidence            688999999999999999953            22333321  1     23568888888875  999999999999999


Q ss_pred             eCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCE
Q 035621          209 RLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKN  287 (387)
Q Consensus       209 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  287 (387)
                      |++.++.++.+. |...|.++.|+|...++++++.|..|++-|+...-..+     ........|...+..+.|+|..-.
T Consensus       259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e-----l~~~vv~ehkdk~i~~rwh~~d~s  333 (350)
T KOG0641|consen  259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE-----LPIMVVAEHKDKAIQCRWHPQDFS  333 (350)
T ss_pred             EeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhc-----CceEEEEeccCceEEEEecCccce
Confidence            999999999886 77899999999999999999999999999987532211     112223468899999999999989


Q ss_pred             EEEEeCCCcEEEEECC
Q 035621          288 LVSAAEDGSVYIWEIE  303 (387)
Q Consensus       288 l~s~~~dg~i~iwd~~  303 (387)
                      +++.+.|.++.+|-+.
T Consensus       334 fisssadkt~tlwa~~  349 (350)
T KOG0641|consen  334 FISSSADKTATLWALN  349 (350)
T ss_pred             eeeccCcceEEEeccC
Confidence            9999999999999764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=6.7e-29  Score=203.30  Aligned_cols=273  Identities=17%  Similarity=0.188  Sum_probs=226.1

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCcee----Ee------------c--cCCCCCceeEEEcCccceeeeccccCCCC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAIL----AH------------F--SGSRSPRRGLTFAGKPFIAASHISPTTGS   63 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~----~~------------~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~d   63 (387)
                      ++++|++.+.++++.+|+|.=|++.+++..    ..            .  +.|...+.+++.++++.+.+    +|+.|
T Consensus       148 vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla----tgg~d  223 (479)
T KOG0299|consen  148 VALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA----TGGRD  223 (479)
T ss_pred             EEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE----ecCCC
Confidence            568999999999999999999999887633    11            0  26778899999999665554    59999


Q ss_pred             CeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEE
Q 035621           64 GSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLIS  142 (387)
Q Consensus        64 ~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  142 (387)
                      ..|.||+.++.+.++.+. |.+.|.+++|-.....|++++.|+.+++|++.....+.++-+|...|.+|....-++.+.+
T Consensus       224 ~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtV  303 (479)
T KOG0299|consen  224 RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTV  303 (479)
T ss_pred             ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEe
Confidence            999999999999999976 6789999999998889999999999999999999999999999999999998888888888


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--
Q 035621          143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--  220 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--  220 (387)
                      |+.|+++++|++             .......+.+|.+.+.|++|-.+   ..|++|+.+|.|.+|++.+.+++.+..  
T Consensus       304 GgrDrT~rlwKi-------------~eesqlifrg~~~sidcv~~In~---~HfvsGSdnG~IaLWs~~KKkplf~~~~A  367 (479)
T KOG0299|consen  304 GGRDRTVRLWKI-------------PEESQLIFRGGEGSIDCVAFIND---EHFVSGSDNGSIALWSLLKKKPLFTSRLA  367 (479)
T ss_pred             ccccceeEEEec-------------cccceeeeeCCCCCeeeEEEecc---cceeeccCCceEEEeeecccCceeEeecc
Confidence            889999999999             22344567788999999999765   789999999999999999999887765  


Q ss_pred             c---C--------CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEE
Q 035621          221 F---P--------CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLV  289 (387)
Q Consensus       221 ~---~--------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  289 (387)
                      |   +        ..|++++..|...++++|+.+|.|++|-+..+-+..     .+...+ .-.+.|++++|+++|++++
T Consensus       368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i-----~~l~~l-s~~GfVNsl~f~~sgk~iv  441 (479)
T KOG0299|consen  368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI-----NLLYSL-SLVGFVNSLAFSNSGKRIV  441 (479)
T ss_pred             ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc-----ceeeec-ccccEEEEEEEccCCCEEE
Confidence            2   1        268899999999999999999999999998854321     111112 3567899999999999766


Q ss_pred             EE-eCCCcEEEE
Q 035621          290 SA-AEDGSVYIW  300 (387)
Q Consensus       290 s~-~~dg~i~iw  300 (387)
                      +| +....+--|
T Consensus       442 agiGkEhRlGRW  453 (479)
T KOG0299|consen  442 AGIGKEHRLGRW  453 (479)
T ss_pred             Eeccccccccee
Confidence            65 344444334

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=7.9e-29  Score=223.00  Aligned_cols=282  Identities=17%  Similarity=0.138  Sum_probs=224.6

Q ss_pred             CCCCceeEEEcCccceeeeccccCC--CCCeEEEEEccCC------------Cccc-ccCCCCCeeeEEeccCCCEEEEe
Q 035621           37 SRSPRRGLTFAGKPFIAASHISPTT--GSGSVHLYNLWSS------------TPLH-NIPVPEPVAPLATTADGSYLFTG  101 (387)
Q Consensus        37 ~~~~v~~~~~~~~~~~~~~~~~~~~--~d~~v~vw~~~~~------------~~~~-~~~~~~~v~~~~~~~~~~~l~~~  101 (387)
                      +...|.++..+|++    ..+++|+  .|+.+++|+.+.-            +.+. ...|.+.|+|+.|+|||++||+|
T Consensus        12 ~~~~IfSIdv~pdg----~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG   87 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDG----VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG   87 (942)
T ss_pred             CCeeEEEEEecCCc----eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence            34458999999954    4555688  8999999987421            1111 12277899999999999999999


Q ss_pred             cCCCcEEEEeCCC------------------CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621          102 GLSGNVYAISVPK------------------GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus       102 ~~dg~i~i~d~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      +.|+.|.+|....                  .+.+..+.+|...|..++|+|++.+|++++.|++|.+|+.         
T Consensus        88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~---------  158 (942)
T KOG0973|consen   88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNA---------  158 (942)
T ss_pred             cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcc---------
Confidence            9999999999762                  1256778899999999999999999999999999999999         


Q ss_pred             CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec-------CCceeEEEeCCCCCe
Q 035621          164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF-------PCAIMGLALDPTETD  236 (387)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~  236 (387)
                         .+...+..+.+|.+.|..+.|.|-+  ++|++-+.|++|++|++.+....+.+..       ...+..+.|+|||.+
T Consensus       159 ---~tF~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~  233 (942)
T KOG0973|consen  159 ---KTFELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHH  233 (942)
T ss_pred             ---ccceeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCe
Confidence               5567889999999999999999985  9999999999999999888777777752       245889999999999


Q ss_pred             EEEEcc----CCcEEEEeccccccccccccceeEeecccccccEEEEEEecC------C-------C----EEEEEeCCC
Q 035621          237 FFAAGS----DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE------G-------K----NLVSAAEDG  295 (387)
Q Consensus       237 l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~-------~----~l~s~~~dg  295 (387)
                      |++...    -..+.|.+..+         ......+-+|.+++.++.|+|.      .       .    .+|+|+.|+
T Consensus       234 las~nA~n~~~~~~~IieR~t---------Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr  304 (942)
T KOG0973|consen  234 LASPNAVNGGKSTIAIIERGT---------WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR  304 (942)
T ss_pred             ecchhhccCCcceeEEEecCC---------ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence            999754    33566766644         3333334589999999999982      1       1    678999999


Q ss_pred             cEEEEECCCccEEEEeecccCCCceeEEEE--------ecCCCceeeEEEecCCCCCC
Q 035621          296 SVYIWEIEKRQVVMVLKNELAGSISEMVIA--------TGIGGSRGCGVVKTGKAGND  345 (387)
Q Consensus       296 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~  345 (387)
                      +|-||.....+++.....-...+|.+|.++        .+.|+.+.+..++.+..|..
T Consensus       305 SlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~  362 (942)
T KOG0973|consen  305 SLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVA  362 (942)
T ss_pred             cEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcc
Confidence            999999999999988887777788888554        55566666666665555443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.3e-29  Score=197.75  Aligned_cols=214  Identities=21%  Similarity=0.308  Sum_probs=181.7

Q ss_pred             CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC------------C------ceeEEccCCCCCeEEEEEcCCCCEEEE
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPK------------G------DILRSFSAHDKPVSCLKISPDGSLLIS  142 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~  142 (387)
                      .|..++.+.+|++||.++++|+.|..|+|+|++.            +      -.++++-.|...|+++.|+|....|++
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS  189 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS  189 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence            3788999999999999999999999999999851            1      246778889999999999999999999


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--
Q 035621          143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--  220 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--  220 (387)
                      |+.|++|++||+.+.          .-+..........+|.++.|+|.+  .+|+.|....++++||+.+.++...-.  
T Consensus       190 ~srD~tvKlFDfsK~----------saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd  257 (430)
T KOG0640|consen  190 GSRDNTVKLFDFSKT----------SAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPD  257 (430)
T ss_pred             ccCCCeEEEEecccH----------HHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCcc
Confidence            999999999999442          112222233455789999999996  999999999999999999998876654  


Q ss_pred             --cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccc-cEEEEEEecCCCEEEEEeCCCcE
Q 035621          221 --FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDG-VVVSVMMMNEGKNLVSAAEDGSV  297 (387)
Q Consensus       221 --~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i  297 (387)
                        |...|+++.+++.+++.++++.||.|++||--..        ..+..+.+.|.+ .|.+..|..+|+|+++.+.|..+
T Consensus       258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~--------rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v  329 (430)
T KOG0640|consen  258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN--------RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV  329 (430)
T ss_pred             cccccceeEEEecCCccEEEEeccCCcEEeeccccH--------HHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence              6678999999999999999999999999998763        333334446664 69999999999999999999999


Q ss_pred             EEEECCCccEEEEeecc
Q 035621          298 YIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       298 ~iwd~~~~~~~~~~~~~  314 (387)
                      ++|.+.+++++..+.+.
T Consensus       330 kLWEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  330 KLWEISTGRMLKEYTGA  346 (430)
T ss_pred             eeeeecCCceEEEEecC
Confidence            99999999999998764

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=1.3e-28  Score=211.22  Aligned_cols=261  Identities=18%  Similarity=0.329  Sum_probs=215.7

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCcee--EeccCCCCCcee-EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-C
Q 035621            7 CNEVILTSSPEGPITAYNPSSGAIL--AHFSGSRSPRRG-LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-V   82 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~   82 (387)
                      ++..+++++.||++++|+-...+.+  ..+.+|.+-|.. +++.+.   ....+++|+.|.++.+|......+...+. |
T Consensus        24 ~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~---~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH  100 (745)
T KOG0301|consen   24 DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES---DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGH  100 (745)
T ss_pred             CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccc---cCcceEeecccceEEEEecCCCCchhhhhcc
Confidence            3447899999999999997655543  345667776666 676651   11235569999999999999999998887 7


Q ss_pred             CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCC
Q 035621           83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHT  162 (387)
Q Consensus        83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  162 (387)
                      +..|.+++...++. +++|+.|.++++|-  .+++...+.+|+..|.++++-|++ .+++|+.|.+|++|          
T Consensus       101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklW----------  166 (745)
T KOG0301|consen  101 KSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLW----------  166 (745)
T ss_pred             ccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEeccCcceeeec----------
Confidence            78999999888877 99999999999997  467777899999999999999987 89999999999999          


Q ss_pred             CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEc
Q 035621          163 DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  241 (387)
                          ..+..++++.+|.+-|+.+++.++   ..|++|+.||.|+.|++ +++++.++. |...+.++...+++..+++++
T Consensus       167 ----k~~~~l~tf~gHtD~VRgL~vl~~---~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g  238 (745)
T KOG0301|consen  167 ----KGGTLLKTFSGHTDCVRGLAVLDD---SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG  238 (745)
T ss_pred             ----cCCchhhhhccchhheeeeEEecC---CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec
Confidence                456788999999999999999887   57999999999999999 566665554 888999999888999999999


Q ss_pred             cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      .|+++++|+...           +.+...-....|+++.+-++|. +++|+.||.||||....
T Consensus       239 EDrtlriW~~~e-----------~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  239 EDRTLRIWKKDE-----------CVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             CCceEEEeecCc-----------eEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            999999998762           2222222344899999988876 78888999999998773

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.1e-28  Score=191.68  Aligned_cols=280  Identities=14%  Similarity=0.153  Sum_probs=207.6

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCcee--Eec--cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAIL--AHF--SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--   75 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--   75 (387)
                      ++||.||++||+++.|+.|+||++.+....  +.+  .-.-+..+.+.|.|+-   .+.+++.-...++++|.+...+  
T Consensus        92 ~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc---~s~vv~~~~g~~l~vyk~~K~~dG  168 (420)
T KOG2096|consen   92 VAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC---KSVVVSVKRGNKLCVYKLVKKTDG  168 (420)
T ss_pred             eEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc---ceEEEEEccCCEEEEEEeeecccC
Confidence            689999999999999999999999764321  111  1112246788999963   2333345577789999874332  


Q ss_pred             -cccccC----------CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe
Q 035621           76 -PLHNIP----------VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG  144 (387)
Q Consensus        76 -~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  144 (387)
                       ....+-          |.-.+..+....++.+|++++.|..|.+|+++ |+.+..+......-+..+.+|+|+++++++
T Consensus       169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~g  247 (420)
T KOG2096|consen  169 SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSG  247 (420)
T ss_pred             CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEec
Confidence             111111          23356666777788999999999999999997 899988887777778899999999999999


Q ss_pred             CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-------cEEE
Q 035621          145 DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-------THLS  217 (387)
Q Consensus       145 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~  217 (387)
                      ..-.|++|.+--..+    ..-..-..+..+.+|+..|..++|++++  ..+++.+.||++++||+.-.       +.++
T Consensus       248 FTpDVkVwE~~f~kd----G~fqev~rvf~LkGH~saV~~~aFsn~S--~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk  321 (420)
T KOG2096|consen  248 FTPDVKVWEPIFTKD----GTFQEVKRVFSLKGHQSAVLAAAFSNSS--TRAVTVSKDGKWRIWDTDVRYEAGQDPKILK  321 (420)
T ss_pred             CCCCceEEEEEeccC----cchhhhhhhheeccchhheeeeeeCCCc--ceeEEEecCCcEEEeeccceEecCCCchHhh
Confidence            999999998721111    1112344667889999999999999986  89999999999999998521       2223


Q ss_pred             EEe-----cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621          218 TVT-----FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA  292 (387)
Q Consensus       218 ~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  292 (387)
                      ...     ..+....+.++|.|+.|+++.. ..++++..+.+        .....+...|...|.+++|+++|+++++++
T Consensus       322 ~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g--------~~~~~~e~~h~~~Is~is~~~~g~~~atcG  392 (420)
T KOG2096|consen  322 EGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDG--------KDYPELEDIHSTTISSISYSSDGKYIATCG  392 (420)
T ss_pred             cCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccC--------ccchhHHHhhcCceeeEEecCCCcEEeeec
Confidence            321     2345568999999998887653 47888887773        333344457999999999999999999986


Q ss_pred             CCCcEEEEE
Q 035621          293 EDGSVYIWE  301 (387)
Q Consensus       293 ~dg~i~iwd  301 (387)
                       |..++++.
T Consensus       393 -dr~vrv~~  400 (420)
T KOG2096|consen  393 -DRYVRVIR  400 (420)
T ss_pred             -ceeeeeec
Confidence             67888876

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.2e-28  Score=189.16  Aligned_cols=286  Identities=15%  Similarity=0.166  Sum_probs=211.3

Q ss_pred             cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC-Cc--ccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEe
Q 035621           35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-TP--LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAIS  111 (387)
Q Consensus        35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  111 (387)
                      ....+.|.+++|+|.   ....++.++-|++||+|+++.. ..  .....+.++|.+++|+.||..+++|+.|+.+++||
T Consensus        24 ~pP~DsIS~l~FSP~---~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQ---ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD  100 (347)
T ss_pred             CCcccchheeEeccc---cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence            345667999999992   1222334899999999999873 33  23445889999999999999999999999999999


Q ss_pred             CCCCceeEEccCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee
Q 035621          112 VPKGDILRSFSAHDKPVSCLKISPDGS--LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI  189 (387)
Q Consensus       112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  189 (387)
                      +.+++ +..+..|.++|.++.|-+...  .|++|+.|++|+.||.+            ...++.++. -.+.+.++..- 
T Consensus       101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R------------~~~pv~t~~-LPeRvYa~Dv~-  165 (347)
T KOG0647|consen  101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR------------SSNPVATLQ-LPERVYAADVL-  165 (347)
T ss_pred             ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccC------------CCCeeeeee-ccceeeehhcc-
Confidence            99995 566778999999999987655  89999999999999994            444444443 23455555442 


Q ss_pred             CCCCceEEEEeCCCcEEEEeCCCCcEEE-EEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeE
Q 035621          190 GSFNSIIISCSMDCTCKFWRLLNGTHLS-TVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELV  266 (387)
Q Consensus       190 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  266 (387)
                         ..+++.+..++.|.+|+++++.... .+.  ..-.++|++..++....+.|+-+|.+.+..+........+. ....
T Consensus       166 ---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFt-FkCH  241 (347)
T KOG0647|consen  166 ---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFT-FKCH  241 (347)
T ss_pred             ---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCcee-EEEe
Confidence               3688888999999999998764332 222  45678999999999889999999999999888743221111 1111


Q ss_pred             eecc---cccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCce--eeEEEecCC
Q 035621          267 TLAN---RHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSR--GCGVVKTGK  341 (387)
Q Consensus       267 ~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~  341 (387)
                      +...   ..--.|++++|+|.-..|+|+|.||+..+||-+....+...+.+ ..+|++-.|.....-..  ...+...|.
T Consensus       242 R~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~-~qpItcc~fn~~G~ifaYA~gYDWSkGh  320 (347)
T KOG0647|consen  242 RSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH-PQPITCCSFNRNGSIFAYALGYDWSKGH  320 (347)
T ss_pred             ccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC-CCccceeEecCCCCEEEEEeeccccccc
Confidence            1100   01125889999999999999999999999999988888887766 45899888876544332  333334444


Q ss_pred             CC
Q 035621          342 AG  343 (387)
Q Consensus       342 ~~  343 (387)
                      ++
T Consensus       321 e~  322 (347)
T KOG0647|consen  321 EG  322 (347)
T ss_pred             cc
Confidence            43

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.9e-29  Score=210.77  Aligned_cols=290  Identities=14%  Similarity=0.219  Sum_probs=234.1

Q ss_pred             cCCCcEEEeeCCCCcEEEEeCCCC--ceeEeccCCCCCceeEEE-cCccceeeeccccCCCCCeEEEEEccCCC--cccc
Q 035621            5 LPCNEVILTSSPEGPITAYNPSSG--AILAHFSGSRSPRRGLTF-AGKPFIAASHISPTTGSGSVHLYNLWSST--PLHN   79 (387)
Q Consensus         5 s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~~~   79 (387)
                      -.+++.|++++.|-+|++|+...+  -++.++..|..-|.|+++ .++..+.    ++|+-|+.|.+||++++.  .+..
T Consensus        82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lv----aSgGLD~~IflWDin~~~~~l~~s  157 (735)
T KOG0308|consen   82 CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELV----ASGGLDRKIFLWDINTGTATLVAS  157 (735)
T ss_pred             hcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeE----EecCCCccEEEEEccCcchhhhhh
Confidence            346789999999999999999877  577888999999999999 5644444    459999999999999872  3332


Q ss_pred             cC----------CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 035621           80 IP----------VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVI  149 (387)
Q Consensus        80 ~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  149 (387)
                      +.          +..+|++++.++.|..+++|+.++.+++||.++++.+..+++|...|.++..++||+.+++++.||+|
T Consensus       158 ~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtI  237 (735)
T KOG0308|consen  158 FNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTI  237 (735)
T ss_pred             ccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceE
Confidence            22          34679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-cEEEEEecCCceeEE
Q 035621          150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-THLSTVTFPCAIMGL  228 (387)
Q Consensus       150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~v~~~  228 (387)
                      ++||+            ....++.++..|...|+++..+|+-  ..+++|+.||.|..=|+++. +....++...++..+
T Consensus       238 rlWdL------------gqQrCl~T~~vH~e~VWaL~~~~sf--~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l  303 (735)
T KOG0308|consen  238 RLWDL------------GQQRCLATYIVHKEGVWALQSSPSF--THVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKL  303 (735)
T ss_pred             Eeeec------------cccceeeeEEeccCceEEEeeCCCc--ceEEecCCCCcEEecccCCchhheEeecCCCchhhh
Confidence            99999            6788999999999999999998876  89999999999999999984 455555677889999


Q ss_pred             EeCCCCCeEEEEccCCcEEEEecccccccccccc---------ceeEeec------ccccccEEEEEEecCCCEEEEEeC
Q 035621          229 ALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG---------QELVTLA------NRHDGVVVSVMMMNEGKNLVSAAE  293 (387)
Q Consensus       229 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~------~~~~~~v~~~~~s~~~~~l~s~~~  293 (387)
                      ..+...+.+.+++.|+.|.-|.............         .......      ......+...+.-.|.++++|-..
T Consensus       304 ~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa  383 (735)
T KOG0308|consen  304 HLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDA  383 (735)
T ss_pred             hhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecC
Confidence            9987777779999999999998765321111000         0000000      001123444445567889999999


Q ss_pred             CCcEEEEECCCccEEEEee
Q 035621          294 DGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       294 dg~i~iwd~~~~~~~~~~~  312 (387)
                      .|.+.+||+-..+.+..+.
T Consensus       384 ~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  384 KGNVALWDILACVKVEDFG  402 (735)
T ss_pred             CCCEEEEEeeeeeehhhcc
Confidence            9999999999888777664

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=2.3e-28  Score=190.53  Aligned_cols=262  Identities=18%  Similarity=0.235  Sum_probs=207.6

Q ss_pred             CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc
Q 035621           37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD  116 (387)
Q Consensus        37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  116 (387)
                      ....|.++.|+|    ..+.|+.++.||++++|++........+.+..++.+++|.++ ..+++|+.||.|+.+|+.+++
T Consensus        12 P~d~IS~v~f~~----~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   12 PEDGISSVKFSP----SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             ChhceeeEEEcC----cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc
Confidence            356699999998    444455578999999999999988899999999999999985 578999999999999998877


Q ss_pred             eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE
Q 035621          117 ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII  196 (387)
Q Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  196 (387)
                      .. .+..|..+|+|+.+++....+++|+.|++|++||.+.            ......+. ....|.++...    ++.|
T Consensus        87 ~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~------------~~~~~~~d-~~kkVy~~~v~----g~~L  148 (323)
T KOG1036|consen   87 ED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN------------KVVVGTFD-QGKKVYCMDVS----GNRL  148 (323)
T ss_pred             ce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc------------cccccccc-cCceEEEEecc----CCEE
Confidence            54 4567999999999999888999999999999999953            11222222 23377777653    4789


Q ss_pred             EEEeCCCcEEEEeCCCCcEEEEEe---cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeeccccc
Q 035621          197 ISCSMDCTCKFWRLLNGTHLSTVT---FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHD  273 (387)
Q Consensus       197 ~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  273 (387)
                      +.|+.|..+.+||+++........   .+-.+.++++-|++.-+++++-||.|.+=.+...+..+.     ....++.|.
T Consensus       149 vVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s-----kkyaFkCHr  223 (323)
T KOG1036|consen  149 VVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS-----KKYAFKCHR  223 (323)
T ss_pred             EEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh-----hceeEEeee
Confidence            999999999999999876554332   567899999999999999999999999877665421111     111112232


Q ss_pred             ---------ccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          274 ---------GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       274 ---------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                               -+|++++|+|-...|+||+.||.|.+||+.+.+.+..+... +.+|..+.|+..
T Consensus       224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~d  285 (323)
T KOG1036|consen  224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMD  285 (323)
T ss_pred             cccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccC
Confidence                     37999999999999999999999999999999999999766 557888877643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.4e-29  Score=187.80  Aligned_cols=236  Identities=18%  Similarity=0.222  Sum_probs=189.7

Q ss_pred             CCCcEEEeeCCCCcEEEEeCCCC---ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621            6 PCNEVILTSSPEGPITAYNPSSG---AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-   81 (387)
Q Consensus         6 ~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-   81 (387)
                      -.|++|||++.|++|+|+...+.   +++.+|.+|.+||..++|..-.  ....|++++.||.|.||.-+.++-.+... 
T Consensus        21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk--~G~iLAScsYDgkVIiWke~~g~w~k~~e~   98 (299)
T KOG1332|consen   21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPK--FGTILASCSYDGKVIIWKEENGRWTKAYEH   98 (299)
T ss_pred             hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccc--cCcEeeEeecCceEEEEecCCCchhhhhhh
Confidence            35889999999999999998754   5688999999999999997411  34556669999999999998885444443 


Q ss_pred             --CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCC---ceeEEccCCCCCeEEEEEcCC---C-----------CEE
Q 035621           82 --VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKG---DILRSFSAHDKPVSCLKISPD---G-----------SLL  140 (387)
Q Consensus        82 --~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~~l  140 (387)
                        |...|++++|.|.  |-.|++++.||.|.+.+.++.   ...+....|.-.|++++|.|.   |           +.|
T Consensus        99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl  178 (299)
T KOG1332|consen   99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL  178 (299)
T ss_pred             hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence              6788999999985  678999999999999988654   223345689999999999985   4           569


Q ss_pred             EEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC--CCceEEEEeCCCcEEEEeCCCCcEEE-
Q 035621          141 ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS--FNSIIISCSMDCTCKFWRLLNGTHLS-  217 (387)
Q Consensus       141 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~-  217 (387)
                      ++|+.|..|+||+...          .....-..+.+|.+-|+.++|+|..  ....|++|+.||++.||..+...... 
T Consensus       179 vSgGcDn~VkiW~~~~----------~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk  248 (299)
T KOG1332|consen  179 VSGGCDNLVKIWKFDS----------DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK  248 (299)
T ss_pred             eccCCccceeeeecCC----------cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc
Confidence            9999999999999843          1233445588999999999999974  23689999999999999876321111 


Q ss_pred             -EE--ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621          218 -TV--TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       218 -~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                       ++  +++..+..+.|++.|+.|++++.|+.+.+|.-..
T Consensus       249 ~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  249 KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence             11  2578899999999999999999999999997654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=8.2e-29  Score=211.65  Aligned_cols=233  Identities=15%  Similarity=0.215  Sum_probs=200.6

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccC-CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc-
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSG-SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~-   79 (387)
                      +.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|...      .+.+|+.++.|..+|+...+.... 
T Consensus       223 v~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~------~lssGsr~~~I~~~dvR~~~~~~~~  296 (484)
T KOG0305|consen  223 VKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS------VLSSGSRDGKILNHDVRISQHVVST  296 (484)
T ss_pred             EEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCc------eEEEecCCCcEEEEEEecchhhhhh
Confidence            57999999999999999999999999999999998 9999999999953      233489999999999988766555 


Q ss_pred             cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEe--CCCcEEEEeCC
Q 035621           80 IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGG--DDGVIATVPIF  155 (387)
Q Consensus        80 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~dg~i~iwd~~  155 (387)
                      +. |...|..+.|++|+.++|+|+.|+.+.|||....++...+..|.+.|..++|+| ...+||+|+  .|+.|++||. 
T Consensus       297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~-  375 (484)
T KOG0305|consen  297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT-  375 (484)
T ss_pred             hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc-
Confidence            44 778999999999999999999999999999988888999999999999999999 566888875  6999999999 


Q ss_pred             cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEE-EeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCC
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS-CSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPT  233 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~  233 (387)
                                 ..+..+... .....|.++.|++.. +.++.+ |..+..|.||+..+.+.+..+. |...|..++++||
T Consensus       376 -----------~~g~~i~~v-dtgsQVcsL~Wsk~~-kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd  442 (484)
T KOG0305|consen  376 -----------NTGARIDSV-DTGSQVCSLIWSKKY-KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD  442 (484)
T ss_pred             -----------CCCcEeccc-ccCCceeeEEEcCCC-CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCC
Confidence                       444444444 345789999999986 334433 3346789999999988888887 8889999999999


Q ss_pred             CCeEEEEccCCcEEEEecccc
Q 035621          234 ETDFFAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       234 ~~~l~~~~~dg~i~i~d~~~~  254 (387)
                      |..+++|+.|.++++|++-..
T Consensus       443 g~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  443 GETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCEEEEecccCcEEeccccCC
Confidence            999999999999999998763

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=7.8e-28  Score=199.84  Aligned_cols=264  Identities=11%  Similarity=0.121  Sum_probs=197.5

Q ss_pred             eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC----cccccC--CCCCeeeEEeccCCCEEEEecC
Q 035621           30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST----PLHNIP--VPEPVAPLATTADGSYLFTGGL  103 (387)
Q Consensus        30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~----~~~~~~--~~~~v~~~~~~~~~~~l~~~~~  103 (387)
                      ....+++|+..|.++++.|    .+..+++|+.|..|++||+....    ..+.+.  ....|..+.|++.|..|++.+.
T Consensus       159 hEi~l~hgtk~Vsal~~Dp----~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg  234 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDP----SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG  234 (641)
T ss_pred             ceEeccCCceEEEEeeecC----CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence            3456788999999999999    66778889999999999996542    222232  2357999999999999999888


Q ss_pred             CCcEEEEeCCCCceeE------------EccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCcc
Q 035621          104 SGNVYAISVPKGDILR------------SFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDL  170 (387)
Q Consensus       104 dg~i~i~d~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  170 (387)
                      ....+++|-...+...            .-++|...++|.+|+|.. ..+++++.||++++||+.+..           .
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k-----------~  303 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK-----------S  303 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch-----------h
Confidence            8999999954333222            225789999999999955 489999999999999995421           1


Q ss_pred             ceEee-----eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE--EEEEe--cC--CceeEEEeCCCCCeEEE
Q 035621          171 MLQKF-----VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH--LSTVT--FP--CAIMGLALDPTETDFFA  239 (387)
Q Consensus       171 ~~~~~-----~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~--~~--~~v~~~~~~~~~~~l~~  239 (387)
                      ....+     .+..-+++..+|++++  .+|++|..||.|.+|+......  ...+.  |.  ..|+|+.|+++|++|++
T Consensus       304 q~qVik~k~~~g~Rv~~tsC~~nrdg--~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS  381 (641)
T KOG0772|consen  304 QLQVIKTKPAGGKRVPVTSCAWNRDG--KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS  381 (641)
T ss_pred             heeEEeeccCCCcccCceeeecCCCc--chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence            11111     1233467888888885  8899999999999999865432  22222  43  48999999999999999


Q ss_pred             EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC------CCcEEEEECCCccEEEEeec
Q 035621          240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE------DGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~  313 (387)
                      -+.|+.+++||++..........    .+  ...-+-+.++|||+.++|++|..      .|.+.+||..+-+.++++.-
T Consensus       382 Rg~D~tLKvWDLrq~kkpL~~~t----gL--~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i  455 (641)
T KOG0772|consen  382 RGFDDTLKVWDLRQFKKPLNVRT----GL--PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI  455 (641)
T ss_pred             ccCCCceeeeeccccccchhhhc----CC--CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence            99999999999997432111000    00  12234678999999999999853      57899999999999988876


Q ss_pred             ccC
Q 035621          314 ELA  316 (387)
Q Consensus       314 ~~~  316 (387)
                      ...
T Consensus       456 ~~a  458 (641)
T KOG0772|consen  456 STA  458 (641)
T ss_pred             CCc
Confidence            533

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-28  Score=213.95  Aligned_cols=280  Identities=15%  Similarity=0.167  Sum_probs=218.9

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCc----eeEeccCC---CCCceeEEEcCccceeeeccccCCCCCeEEEEEccC--
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGA----ILAHFSGS---RSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS--   73 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~--   73 (387)
                      +..++-..++.++. ..++||.+....    +...++..   .-.+..+.|..   +...++++++..|.|.+||+..  
T Consensus        46 s~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~---~~~NlIAT~s~nG~i~vWdlnk~~  121 (839)
T KOG0269|consen   46 SVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQ---LYSNLIATCSTNGVISVWDLNKSI  121 (839)
T ss_pred             eecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhccccc---chhhhheeecCCCcEEEEecCccc
Confidence            44566666777665 467777765322    11111111   11255677763   3556888999999999999977  


Q ss_pred             -CCcccccC-CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcE
Q 035621           74 -STPLHNIP-VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVI  149 (387)
Q Consensus        74 -~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i  149 (387)
                       .+.+..+. |...++++.|++ ..++|++|+.||.|++||++..+-..++.+....|+.++|+| .+..++++...|.+
T Consensus       122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~l  201 (839)
T KOG0269|consen  122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYL  201 (839)
T ss_pred             cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceE
Confidence             44444554 778999999998 457899999999999999999988888888889999999999 67799999999999


Q ss_pred             EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--EEEEEecCCceeE
Q 035621          150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT--HLSTVTFPCAIMG  227 (387)
Q Consensus       150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~  227 (387)
                      ++||+++           ...+...+.+|.++|.++.|+|+  +.+|+||+.|++|+|||+.+.+  .+.++..-.++.+
T Consensus       202 qlWDlRq-----------p~r~~~k~~AH~GpV~c~nwhPn--r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~r  268 (839)
T KOG0269|consen  202 QLWDLRQ-----------PDRCEKKLTAHNGPVLCLNWHPN--REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGR  268 (839)
T ss_pred             EEeeccC-----------chhHHHHhhcccCceEEEeecCC--CceeeecCCCccEEEEeccCCCccceeEEeecceeee
Confidence            9999974           55677888999999999999996  5999999999999999998654  5666677889999


Q ss_pred             EEeCCCCCe-EEEEcc--CCcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEEeCCCcEEEEECC
Q 035621          228 LALDPTETD-FFAAGS--DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       228 ~~~~~~~~~-l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~  303 (387)
                      +.|-|...+ |++++.  |-.|++||++-        ...+...+..|...++.++|.. |...|.+++.||+|..-.++
T Consensus       269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrR--------PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  269 VKWRPARSYHLATCSMVVDTSVHVWDVRR--------PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             eeeccCccchhhhhhccccceEEEEeecc--------ccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence            999998765 444443  88999999986        3445555668999999999964 45688899999998776666


Q ss_pred             CccE
Q 035621          304 KRQV  307 (387)
Q Consensus       304 ~~~~  307 (387)
                      +...
T Consensus       341 nat~  344 (839)
T KOG0269|consen  341 NATT  344 (839)
T ss_pred             cccC
Confidence            5543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=1e-26  Score=192.76  Aligned_cols=305  Identities=17%  Similarity=0.195  Sum_probs=233.1

Q ss_pred             ccccCC--CcEEEee--CCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621            2 LHHLPC--NEVILTS--SPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL   77 (387)
Q Consensus         2 l~~s~~--~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~   77 (387)
                      ++||+.  |.+|+.-  +.+..+.|||.+.+......+...+.|....|+|.    ...++.....+.+.+|+.+.+...
T Consensus       160 vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPt----d~nliit~Gk~H~~Fw~~~~~~l~  235 (626)
T KOG2106|consen  160 VAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPT----DPNLIITCGKGHLYFWTLRGGSLV  235 (626)
T ss_pred             eeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccC----CCcEEEEeCCceEEEEEccCCceE
Confidence            567763  4555543  34556899999988888888878888999999992    222333567889999999887655


Q ss_pred             ccc---C--CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621           78 HNI---P--VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATV  152 (387)
Q Consensus        78 ~~~---~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  152 (387)
                      +..   +  ....|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++.-.+|.+| +|+.|+.|..|
T Consensus       236 k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~W  313 (626)
T KOG2106|consen  236 KRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILW  313 (626)
T ss_pred             EEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEec
Confidence            433   2  235699999999987 6799999999999998888777777999999999999999755 59999999999


Q ss_pred             eCCcccccCCCCCC-----------------------------CCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621          153 PIFQLVDEHTDDKN-----------------------------PDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC  203 (387)
Q Consensus       153 d~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~  203 (387)
                      |- ........+..                             -.........+|......++.+|+.  +.+++++.|+
T Consensus       314 d~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~--~q~~T~gqdk  390 (626)
T KOG2106|consen  314 DD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK--NQLLTCGQDK  390 (626)
T ss_pred             cc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh--hheeeccCcc
Confidence            93 21111100000                             0111222346788889999999986  8999999999


Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621          204 TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN  283 (387)
Q Consensus       204 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  283 (387)
                      .+++|+  ..+++.+.....+..++.|+|.| .+++|+..|...+.|.++.         .+...... ..+++.++|+|
T Consensus       391 ~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---------~lv~~~~d-~~~ls~v~ysp  457 (626)
T KOG2106|consen  391 HVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---------DLVTIHTD-NEQLSVVRYSP  457 (626)
T ss_pred             eEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccc---------eeEEEEec-CCceEEEEEcC
Confidence            999999  67777787888999999999999 9999999999999999872         23333223 78899999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCC-ccEEEEeecccCCCceeEEEEecC
Q 035621          284 EGKNLVSAAEDGSVYIWEIEK-RQVVMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       284 ~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~  328 (387)
                      +|.+||.|+.|+.|+||.+.. ++.......+...+|+.+.|++.+
T Consensus       458 ~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds  503 (626)
T KOG2106|consen  458 DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS  503 (626)
T ss_pred             CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC
Confidence            999999999999999999876 445555544444688888777654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=6.7e-28  Score=196.09  Aligned_cols=221  Identities=22%  Similarity=0.309  Sum_probs=195.7

Q ss_pred             CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCC
Q 035621           85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDD  164 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  164 (387)
                      .+.++...|....+++|+.|..+.++|...++.+..+++|...|+.+.|+|+...+++++.|..|++|..          
T Consensus       221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~----------  290 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSV----------  290 (506)
T ss_pred             CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecc----------
Confidence            4677777777788999999999999999999999999999999999999999999999999999999998          


Q ss_pred             CCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC---CceeEEEeCCCCCeEEEEc
Q 035621          165 KNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP---CAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~  241 (387)
                        +..........|..+|+.+..+|.+  .||++++.|++..+.|++++..+....+.   -.+++.+|+|||..+.+|.
T Consensus       291 --~~~s~~~~~~~h~~~V~~ls~h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt  366 (506)
T KOG0289|consen  291 --PLSSEPTSSRPHEEPVTGLSLHPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT  366 (506)
T ss_pred             --ccccCccccccccccceeeeeccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC
Confidence              5555667778999999999999985  99999999999999999999999888764   3589999999999999999


Q ss_pred             cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCcee
Q 035621          242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISE  321 (387)
Q Consensus       242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  321 (387)
                      .||.+++||+..+.         ...-+.+|.++|..++|+.+|-+|+++++|+.|++||++.-+...++.......+..
T Consensus       367 ~d~~vkiwdlks~~---------~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s  437 (506)
T KOG0289|consen  367 PDGVVKIWDLKSQT---------NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNS  437 (506)
T ss_pred             CCceEEEEEcCCcc---------ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccccee
Confidence            99999999999833         223345799999999999999999999999999999999999888888766657777


Q ss_pred             EEEEecC
Q 035621          322 MVIATGI  328 (387)
Q Consensus       322 ~~~~~~~  328 (387)
                      +.|...+
T Consensus       438 ~~fD~SG  444 (506)
T KOG0289|consen  438 LSFDQSG  444 (506)
T ss_pred             EEEcCCC
Confidence            7665433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=4.1e-28  Score=198.53  Aligned_cols=249  Identities=17%  Similarity=0.277  Sum_probs=191.3

Q ss_pred             ccCC-CcEEEeeCCCCcEEEEeCCCCc----------eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc
Q 035621            4 HLPC-NEVILTSSPEGPITAYNPSSGA----------ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW   72 (387)
Q Consensus         4 ~s~~-~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~   72 (387)
                      +-|+ ..++|+++..+.|+|||..+..          +-..+.+|...-.++.|++.   ....+++++.|++|++||+.
T Consensus       132 ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~---~~g~Lls~~~d~~i~lwdi~  208 (422)
T KOG0264|consen  132 YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ---QEGTLLSGSDDHTICLWDIN  208 (422)
T ss_pred             hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc---cceeEeeccCCCcEEEEecc
Confidence            3454 4578888999999999986422          12267889998889999984   33456679999999999996


Q ss_pred             CCCcc-------ccc-CCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCC--CCceeEEccCCCCCeEEEEEcC-CCCEE
Q 035621           73 SSTPL-------HNI-PVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVP--KGDILRSFSAHDKPVSCLKISP-DGSLL  140 (387)
Q Consensus        73 ~~~~~-------~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l  140 (387)
                      .....       ..+ .|...|..++|++ +..++++++.|+.+.|||++  +.++.....+|.+.|.|++|+| ++..|
T Consensus       209 ~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~il  288 (422)
T KOG0264|consen  209 AESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFIL  288 (422)
T ss_pred             ccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceE
Confidence            55331       112 2678899999999 55678889999999999999  5566777889999999999999 66789


Q ss_pred             EEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe
Q 035621          141 ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT  220 (387)
Q Consensus       141 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  220 (387)
                      |+|+.|++|++||+|++           ..++..+.+|...|..+.|+|.. ...|++++.|+.+.+||+..-...+.-.
T Consensus       289 AT~S~D~tV~LwDlRnL-----------~~~lh~~e~H~dev~~V~WSPh~-etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  289 ATGSADKTVALWDLRNL-----------NKPLHTFEGHEDEVFQVEWSPHN-ETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             EeccCCCcEEEeechhc-----------ccCceeccCCCcceEEEEeCCCC-CceeEecccCCcEEEEeccccccccChh
Confidence            99999999999999864           34788999999999999999986 6899999999999999986532222100


Q ss_pred             cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC-EEEEEeCCCcEEE
Q 035621          221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAAEDGSVYI  299 (387)
Q Consensus       221 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~i  299 (387)
                               ..          .||                 ..++.-.-.+|...|..+.|+|+.. .|++.++|+.+.|
T Consensus       357 ---------da----------~dg-----------------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI  400 (422)
T KOG0264|consen  357 ---------DA----------EDG-----------------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI  400 (422)
T ss_pred             ---------hh----------ccC-----------------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence                     00          000                 1223333457888999999999876 4667889999999


Q ss_pred             EECC
Q 035621          300 WEIE  303 (387)
Q Consensus       300 wd~~  303 (387)
                      |+..
T Consensus       401 W~~s  404 (422)
T KOG0264|consen  401 WQMA  404 (422)
T ss_pred             eecc
Confidence            9865

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=1.6e-27  Score=184.82  Aligned_cols=280  Identities=15%  Similarity=0.215  Sum_probs=210.8

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCc----------eeE-----eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc
Q 035621            7 CNEVILTSSPEGPITAYNPSSGA----------ILA-----HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL   71 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~----------~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~   71 (387)
                      .|+++++|+.||.|.+||+++..          ...     .-.+|.-.|..+.|-|-   ....+.+++-|.++++||.
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~---DtGmFtssSFDhtlKVWDt  131 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI---DTGMFTSSSFDHTLKVWDT  131 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee---cCceeecccccceEEEeec
Confidence            58999999999999999997532          011     11357778999999982   2234445899999999999


Q ss_pred             cCCCcccccCCCCCeeeEEeccC---CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEeCCC
Q 035621           72 WSSTPLHNIPVPEPVAPLATTAD---GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGGDDG  147 (387)
Q Consensus        72 ~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg  147 (387)
                      ++.+....++.++.|+.-+++|-   ..++|+|..+-.|++-|+.+|...+++.+|.+.|.++.|+|... .|++|+.||
T Consensus       132 nTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg  211 (397)
T KOG4283|consen  132 NTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADG  211 (397)
T ss_pred             ccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCc
Confidence            99999999999999999999993   45788888889999999999999999999999999999999766 578999999


Q ss_pred             cEEEEeCCccccc-CCCCC-C-CCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE-EEe---
Q 035621          148 VIATVPIFQLVDE-HTDDK-N-PDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS-TVT---  220 (387)
Q Consensus       148 ~i~iwd~~~~~~~-~~~~~-~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~---  220 (387)
                      .|++||+++.... ..... + .....++.-..|.+.++.++|..++  .++++++.|..+++|+..+|+... .+.   
T Consensus       212 ~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~--~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~  289 (397)
T KOG4283|consen  212 AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA--RYLASCGTDDRIRVWNMESGRNTLREFGPII  289 (397)
T ss_pred             eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc--hhhhhccCccceEEeecccCccccccccccc
Confidence            9999999864111 00000 0 1222333456899999999998775  899999999999999998875321 111   


Q ss_pred             cC----CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCc
Q 035621          221 FP----CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS  296 (387)
Q Consensus       221 ~~----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  296 (387)
                      ++    -.+. +. +.+...++.--.++.+.++.+-.+         .....+..|...|.+.++-|+-+...+|..|+.
T Consensus       290 ~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sg---------s~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~n  358 (397)
T KOG4283|consen  290 HNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEG---------SFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGN  358 (397)
T ss_pred             ccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCc---------eEEEeeecccceeeEEeecCchhhhhccccCCc
Confidence            11    1111 22 223333333344578888877663         233344578888999999999999999999999


Q ss_pred             EEEEEC
Q 035621          297 VYIWEI  302 (387)
Q Consensus       297 i~iwd~  302 (387)
                      |..|-.
T Consensus       359 i~~w~p  364 (397)
T KOG4283|consen  359 IYMWSP  364 (397)
T ss_pred             cccccc
Confidence            999986

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=4e-27  Score=202.14  Aligned_cols=273  Identities=23%  Similarity=0.305  Sum_probs=217.9

Q ss_pred             CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc--C-CCCCeee-EEecc-CCCEEEEec
Q 035621           28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI--P-VPEPVAP-LATTA-DGSYLFTGG  102 (387)
Q Consensus        28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~--~-~~~~v~~-~~~~~-~~~~l~~~~  102 (387)
                      .+..+.+.+|...|..+++.+..     .+++++.||++++|+-..++.+...  . +.+-+.+ +++.+ ++-.+++|+
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~-----~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~   78 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGV-----CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGG   78 (745)
T ss_pred             ceeEEEeccCccchheeEecCCe-----EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeec
Confidence            35667889999999999887743     4455899999999998666655432  2 3444544 67765 555699999


Q ss_pred             CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621          103 LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV  182 (387)
Q Consensus       103 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  182 (387)
                      .|+.+.+|.+.+..++..+++|+..|.++....++. +++|+.|.++++|..              +.+...+.+|+..|
T Consensus        79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--------------~~l~~~l~gH~asV  143 (745)
T KOG0301|consen   79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--------------GELVYSLQGHTASV  143 (745)
T ss_pred             ccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--------------hhhhcccCCcchhe
Confidence            999999999999999999999999999999887776 999999999999965              44566689999999


Q ss_pred             EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc
Q 035621          183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK  261 (387)
Q Consensus       183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  261 (387)
                      +++...|.   +.++||+.|.+|++|.-  ++.+++|. |...|+.+++-+++ .++++++||.|++|++..        
T Consensus       144 WAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g--------  209 (745)
T KOG0301|consen  144 WAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG--------  209 (745)
T ss_pred             eeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC--------
Confidence            99998887   58999999999999974  77788887 78899999998764 678899999999999954        


Q ss_pred             cceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEE-------EecCCCceee
Q 035621          262 GQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVI-------ATGIGGSRGC  334 (387)
Q Consensus       262 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~~~~  334 (387)
                        .......+|+..|.++...+++..++++++|++++||+..  ++++.+..... +++++.+       ..++|+.+.+
T Consensus       210 --e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt-siWsa~~L~NgDIvvg~SDG~VrV  284 (745)
T KOG0301|consen  210 --EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT-SIWSAKVLLNGDIVVGGSDGRVRV  284 (745)
T ss_pred             --ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc-ceEEEEEeeCCCEEEeccCceEEE
Confidence              2233345899999999988888999999999999999977  77777765432 5665532       3344554566


Q ss_pred             EEEec
Q 035621          335 GVVKT  339 (387)
Q Consensus       335 ~~~~~  339 (387)
                      +....
T Consensus       285 fT~~k  289 (745)
T KOG0301|consen  285 FTVDK  289 (745)
T ss_pred             EEecc
Confidence            55543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.7e-27  Score=195.21  Aligned_cols=279  Identities=17%  Similarity=0.234  Sum_probs=221.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCC--CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPS--SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~   79 (387)
                      +.|+|...+|++|+.||.++||.+.  +...++.+.-...||.+..|.|++.   +.+++++....++.||+++.+....
T Consensus       219 v~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~---~~i~~s~rrky~ysyDle~ak~~k~  295 (514)
T KOG2055|consen  219 VQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH---SVIFTSGRRKYLYSYDLETAKVTKL  295 (514)
T ss_pred             EEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc---eEEEecccceEEEEeeccccccccc
Confidence            6899999999999999999999874  3345666666778899999999543   2445588999999999988865543


Q ss_pred             cC---C-CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621           80 IP---V-PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF  155 (387)
Q Consensus        80 ~~---~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  155 (387)
                      -+   + ...+..+..++++++|+..+..|.|.+....+++.+..++ -.+.|..++|+.+++.|++++.+|.|.+||+ 
T Consensus       296 ~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl-  373 (514)
T KOG2055|consen  296 KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNL-  373 (514)
T ss_pred             cCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEec-
Confidence            33   1 2357788999999999999999999999999999999887 4788999999999999999999999999999 


Q ss_pred             cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC------CcEEEEEe-cCCceeEE
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN------GTHLSTVT-FPCAIMGL  228 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~-~~~~v~~~  228 (387)
                                 ....+++.+.. .+.|....+++..++.+|++|+..|.|.|||..+      .+++..+. ....|+++
T Consensus       374 -----------~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl  441 (514)
T KOG2055|consen  374 -----------RQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL  441 (514)
T ss_pred             -----------CCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence                       44456666653 4556555556555569999999999999999653      34555554 56789999


Q ss_pred             EeCCCCCeEEEEcc--CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          229 ALDPTETDFFAAGS--DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       229 ~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      .|+|+...|+.++.  +..+++-.+.+.......   +..   ...-+.|+|++|+|.+.+||.|..+|.|.+|.+.
T Consensus       442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNf---P~~---n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  442 QFNHDAQILAIASRVKKNALRLVHVPSCTVFSNF---PTS---NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeCcchhhhhhhhhccccceEEEeccceeeeccC---CCC---CCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            99999999998876  677888777663322211   111   2334579999999999999999999999999864

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=9.1e-27  Score=178.12  Aligned_cols=229  Identities=16%  Similarity=0.267  Sum_probs=198.4

Q ss_pred             cccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621           76 PLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF  155 (387)
Q Consensus        76 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  155 (387)
                      ++....|+.+++.+.++.+|.+|++++.|....+|--.+|+.+.++.+|.+.|.|+..+.+.+.+++|+.|.++++||+ 
T Consensus         3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv-   81 (327)
T KOG0643|consen    3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV-   81 (327)
T ss_pred             ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc-
Confidence            3444458889999999999999999999999999998899999999999999999999999999999999999999999 


Q ss_pred             cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-----CCcEEEEeCC-------CCcEEEEEe-cC
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-----DCTCKFWRLL-------NGTHLSTVT-FP  222 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~-------~~~~~~~~~-~~  222 (387)
                                 +.++.+..++ -..+|..+.|++++  ++++.+..     .+.|.++|++       ..++...+. ..
T Consensus        82 -----------~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~  147 (327)
T KOG0643|consen   82 -----------ETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD  147 (327)
T ss_pred             -----------CCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc
Confidence                       6777777765 45789999999885  66665544     3679999998       344566665 56


Q ss_pred             CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621          223 CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       223 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  302 (387)
                      +.++.+.|.|-+++|++|..||.|..||.++        +.+.......|...|+.++++||..++++++.|.+-++||+
T Consensus       148 skit~a~Wg~l~~~ii~Ghe~G~is~~da~~--------g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~  219 (327)
T KOG0643|consen  148 SKITSALWGPLGETIIAGHEDGSISIYDART--------GKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV  219 (327)
T ss_pred             cceeeeeecccCCEEEEecCCCcEEEEEccc--------CceeeechhhhccccccccccCCcceEEecccCccceeeec
Confidence            8899999999999999999999999999998        45566666679999999999999999999999999999999


Q ss_pred             CCccEEEEeecccCCCceeEEEEecCC
Q 035621          303 EKRQVVMVLKNELAGSISEMVIATGIG  329 (387)
Q Consensus       303 ~~~~~~~~~~~~~~~~v~~~~~~~~~~  329 (387)
                      .+-++++++...  .+|++.+++|-.+
T Consensus       220 ~tl~v~Kty~te--~PvN~aaisP~~d  244 (327)
T KOG0643|consen  220 RTLEVLKTYTTE--RPVNTAAISPLLD  244 (327)
T ss_pred             cceeeEEEeeec--ccccceecccccc
Confidence            999999999865  4688888877443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=7.3e-27  Score=206.64  Aligned_cols=273  Identities=15%  Similarity=0.134  Sum_probs=215.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCC-ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSG-AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++|.|+|++|++++.||.|++|+..+. +...++..+...|.+++....      ++++++.+++|.+|.+.+++.-..+
T Consensus        19 i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~------~f~~~s~~~tv~~y~fps~~~~~iL   92 (933)
T KOG1274|consen   19 ICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN------HFLTGSEQNTVLRYKFPSGEEDTIL   92 (933)
T ss_pred             EEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc------ceEEeeccceEEEeeCCCCCcccee
Confidence            689999999999999999999998766 444445447778888887764      5555889999999999888765433


Q ss_pred             -CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccc
Q 035621           81 -PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVD  159 (387)
Q Consensus        81 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  159 (387)
                       +..-++.+++|+.+|+++|.|+.|-.|++.++.+......+++|.++|.++.|+|++++|++.+-||.|++||+.....
T Consensus        93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~  172 (933)
T KOG1274|consen   93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL  172 (933)
T ss_pred             eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh
Confidence             3567899999999999999999999999999999999999999999999999999999999999999999999943221


Q ss_pred             cCCCCCCCCccceEeeec-cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceeEEEeCCCCC
Q 035621          160 EHTDDKNPDDLMLQKFVA-HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT---FPCAIMGLALDPTET  235 (387)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~  235 (387)
                      ......     ....... ....+..++|+|++  ..++....|+.|++|+....+....+.   +...+..++|+|.|+
T Consensus       173 ~~tl~~-----v~k~n~~~~s~i~~~~aW~Pk~--g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~  245 (933)
T KOG1274|consen  173 SKTLTG-----VDKDNEFILSRICTRLAWHPKG--GTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK  245 (933)
T ss_pred             hhhccc-----CCccccccccceeeeeeecCCC--CeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence            111000     0000111 14566788999986  566667789999999999999888876   344599999999999


Q ss_pred             eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEE
Q 035621          236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIW  300 (387)
Q Consensus       236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw  300 (387)
                      |||+++.+|.|.+||..+-.+             ......|.+++|.|+...+-.-...|...+|
T Consensus       246 YiAAs~~~g~I~vWnv~t~~~-------------~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  246 YIAASTLDGQILVWNVDTHER-------------HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             EEeeeccCCcEEEEecccchh-------------ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence            999999999999999987211             1234579999999988766554445544444

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=2.7e-27  Score=196.18  Aligned_cols=270  Identities=15%  Similarity=0.229  Sum_probs=217.0

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCC---ceeEeccC--CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSG---AILAHFSG--SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL   77 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~   77 (387)
                      .+|...+++.||+. |.|+|||+...   .++..+..  ...-|+++...|++.    .+++|+.-.++.|||+....+.
T Consensus       426 tIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr----tLivGGeastlsiWDLAapTpr  500 (705)
T KOG0639|consen  426 TISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR----TLIVGGEASTLSIWDLAAPTPR  500 (705)
T ss_pred             EecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc----eEEeccccceeeeeeccCCCcc
Confidence            45667788999886 88999998632   23334432  234488888888543    3445888999999999776554


Q ss_pred             cccCCC---CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621           78 HNIPVP---EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        78 ~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  154 (387)
                      ...+..   -..++++.+||.+..+++..||.|.|||+.+...++.|++|...+.||..++||..|-+|+-|.+|+.||+
T Consensus       501 ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl  580 (705)
T KOG0639|consen  501 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL  580 (705)
T ss_pred             hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence            433332   35788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE  234 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  234 (387)
                      ++.            ..+... ...+.|.++.++|.+  .+++.|-.++.+.+-.....+......|.+-|.++.|.+.|
T Consensus       581 reg------------rqlqqh-dF~SQIfSLg~cP~~--dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cG  645 (705)
T KOG0639|consen  581 REG------------RQLQQH-DFSSQIFSLGYCPTG--DWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCG  645 (705)
T ss_pred             hhh------------hhhhhh-hhhhhheecccCCCc--cceeeecccCcEEEEecCCccceeecccccEEEEEEecccC
Confidence            542            222221 234678999999985  99999999999999887766655555688999999999999


Q ss_pred             CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621          235 TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       235 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  302 (387)
                      +++++.+.|+.+..|....+.        .+.+.  .....|.++..|.|.++|+||+.|..-.+|.+
T Consensus       646 kwfvStGkDnlLnawrtPyGa--------siFqs--kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  646 KWFVSTGKDNLLNAWRTPYGA--------SIFQS--KESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ceeeecCchhhhhhccCcccc--------ceeec--cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            999999999999999887743        22222  45778999999999999999999998888875

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=8.2e-27  Score=201.12  Aligned_cols=273  Identities=16%  Similarity=0.242  Sum_probs=215.6

Q ss_pred             EEEeeCCCCcEEEEeCCCCc---eeE----------------------------------eccCCCCCceeEEEcCccce
Q 035621           10 VILTSSPEGPITAYNPSSGA---ILA----------------------------------HFSGSRSPRRGLTFAGKPFI   52 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~---~~~----------------------------------~~~~~~~~v~~~~~~~~~~~   52 (387)
                      -++|++.|++|++||+..+.   ..+                                  ..-.....+++++.+|++..
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            48999999999999986421   100                                  00012335899999996554


Q ss_pred             eeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEecc---CCCEEEEecCCCcEEEEeCCC-CceeEEccCCCCC
Q 035621           53 AASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTA---DGSYLFTGGLSGNVYAISVPK-GDILRSFSAHDKP  127 (387)
Q Consensus        53 ~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~  127 (387)
                          +++|..-|.+++|++..-+....+. |...|.|+.|+.   ..++||+++.|..|++||+.. -.++.++.+|...
T Consensus       474 ----LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss  549 (1080)
T KOG1408|consen  474 ----LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS  549 (1080)
T ss_pred             ----ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence                4559999999999999888777776 778999999986   357899999999999999854 4667888999999


Q ss_pred             eEEEEEcCCC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcE
Q 035621          128 VSCLKISPDG--SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC  205 (387)
Q Consensus       128 v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i  205 (387)
                      |+++.|.-+|  ..+++++.|+.|.+ +..+....      ....+..+.......+..+++.|..  .++++++.|..|
T Consensus       550 ITsvKFa~~gln~~MiscGADksimF-r~~qk~~~------g~~f~r~t~t~~ktTlYDm~Vdp~~--k~v~t~cQDrni  620 (1080)
T KOG1408|consen  550 ITSVKFACNGLNRKMISCGADKSIMF-RVNQKASS------GRLFPRHTQTLSKTTLYDMAVDPTS--KLVVTVCQDRNI  620 (1080)
T ss_pred             eeEEEEeecCCceEEEeccCchhhhe-ehhccccC------ceeccccccccccceEEEeeeCCCc--ceEEEEecccce
Confidence            9999998876  68999999998754 33210000      0011111111223567888888875  899999999999


Q ss_pred             EEEeCCCCcEEEEEe----cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE
Q 035621          206 KFWRLLNGTHLSTVT----FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM  281 (387)
Q Consensus       206 ~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  281 (387)
                      +|||+.+++..+.|+    +.+....+...|.|.|+++.+.|.++.++|+.++         ++.....+|...|+.+.|
T Consensus       621 rif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---------EcvA~m~GHsE~VTG~kF  691 (1080)
T KOG1408|consen  621 RIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---------ECVAQMTGHSEAVTGVKF  691 (1080)
T ss_pred             EEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---------hhhhhhcCcchheeeeee
Confidence            999999999999997    4577889999999999999999999999999873         333444589999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCC
Q 035621          282 MNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       282 s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      .+|-+.|++.+.||.|.||.+..
T Consensus       692 ~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  692 LNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cccchhheeecCCceEEEEECch
Confidence            99999999999999999999865

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1e-24  Score=163.16  Aligned_cols=240  Identities=16%  Similarity=0.200  Sum_probs=191.1

Q ss_pred             CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC------CC-----c-----ccccCCCCCeeeEEeccCCCEEEE
Q 035621           37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS------ST-----P-----LHNIPVPEPVAPLATTADGSYLFT  100 (387)
Q Consensus        37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~------~~-----~-----~~~~~~~~~v~~~~~~~~~~~l~~  100 (387)
                      ....|++++|+|.+.+.    +.|+...++++-....      +.     +     .+...|.+.|+|.+|+|+|.++++
T Consensus        31 dsqairav~fhp~g~ly----avgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat  106 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLY----AVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT  106 (350)
T ss_pred             chhheeeEEecCCCceE----EeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence            55679999999955444    3488888888864421      11     1     111126688999999999999999


Q ss_pred             ecCCCcEEEEeCCCCce-----eEEccCCCCCeEEEEEcCC----CCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCcc
Q 035621          101 GGLSGNVYAISVPKGDI-----LRSFSAHDKPVSCLKISPD----GSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDL  170 (387)
Q Consensus       101 ~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~  170 (387)
                      |+.|.+|++.-++...+     -..+.-|.+.|..++|-.+    +.+|++++ .|..|++-|.            ..+.
T Consensus       107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc------------~~g~  174 (350)
T KOG0641|consen  107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC------------GRGQ  174 (350)
T ss_pred             cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec------------CCCC
Confidence            99999999987654322     2356679999999999653    45677765 4677887787            6778


Q ss_pred             ceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe---c-----CCceeEEEeCCCCCeEEEEcc
Q 035621          171 MLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT---F-----PCAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       171 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~-----~~~v~~~~~~~~~~~l~~~~~  242 (387)
                      ..+.+.+|.+.|.++- +.+  +-++++|+.|.+|++||++-..++.++.   +     .+.|.+++..|.|++|++|-.
T Consensus       175 ~~~a~sghtghilaly-swn--~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~  251 (350)
T KOG0641|consen  175 GFHALSGHTGHILALY-SWN--GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA  251 (350)
T ss_pred             cceeecCCcccEEEEE-Eec--CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC
Confidence            8899999999998763 444  4899999999999999999999888875   1     257999999999999999999


Q ss_pred             CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          243 DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       243 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      |....+||++.+         ...+.+..|...|.++.|+|...|+++++.|..|++=|++.
T Consensus       252 dssc~lydirg~---------r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  252 DSSCMLYDIRGG---------RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             CCceEEEEeeCC---------ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            999999999973         33344457999999999999999999999999999999874

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2e-26  Score=180.28  Aligned_cols=231  Identities=14%  Similarity=0.170  Sum_probs=187.0

Q ss_pred             cCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CC
Q 035621            5 LPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VP   83 (387)
Q Consensus         5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~   83 (387)
                      .-++.++|+|+.|-+|+|||..+...+..+-.|.+.|+++.|.+..  ..+.+.+|+.||.|.+|+...-+++..++ |.
T Consensus        50 AVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~--S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~  127 (362)
T KOG0294|consen   50 AVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPL--SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHK  127 (362)
T ss_pred             EecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCc--chhheeeecCCCcEEEEEcCCeEEeeeecccc
Confidence            3478999999999999999999999999999999999999999843  22378889999999999998888888887 66


Q ss_pred             CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621           84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      ..|+.++.+|.+++-++.+.|+.++.||+-.|+.-..++- ...-+.+.|+|.|.+++.++.+ .|-+|.+.        
T Consensus       128 ~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d--------  197 (362)
T KOG0294|consen  128 GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLD--------  197 (362)
T ss_pred             cccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecc--------
Confidence            7899999999999999999999999999988876544432 2223459999999999888876 47788772        


Q ss_pred             CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEe--CCCCCeEEEE
Q 035621          164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLAL--DPTETDFFAA  240 (387)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~--~~~~~~l~~~  240 (387)
                          .......+. ....+.++.|..   +..|++|+.|+.|.+||..+..+...+. |+..|-.+.+  .|++.+|+++
T Consensus       198 ----~A~v~~~i~-~~~r~l~~~~l~---~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTa  269 (362)
T KOG0294|consen  198 ----NASVFREIE-NPKRILCATFLD---GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTA  269 (362)
T ss_pred             ----cHhHhhhhh-ccccceeeeecC---CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEe
Confidence                222222221 224455565543   4799999999999999999988888877 8889998874  4678899999


Q ss_pred             ccCCcEEEEeccccc
Q 035621          241 GSDGLIYKGLLKYQS  255 (387)
Q Consensus       241 ~~dg~i~i~d~~~~~  255 (387)
                      +.||.|++||++...
T Consensus       270 SSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  270 SSDGFIKVWDIDMET  284 (362)
T ss_pred             ccCceEEEEEccccc
Confidence            999999999998753

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.6e-26  Score=179.72  Aligned_cols=277  Identities=13%  Similarity=0.129  Sum_probs=210.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      +.|++.|.+||+|..||.|.|||..|...-+.+.+|..+|.+++|++++..    +++++.|..+.+||+..|.+++.+.
T Consensus        29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~----LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   29 CQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRK----LLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             EEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCE----eeeecCCceeEEEeccCCCceeEEE
Confidence            579999999999999999999999999999999999999999999995544    4459999999999999999999999


Q ss_pred             CCCCeeeEEeccCCC-EEEEecCCCcEEEEeCCCCceeEEccCC----CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621           82 VPEPVAPLATTADGS-YLFTGGLSGNVYAISVPKGDILRSFSAH----DKPVSCLKISPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      .+.+|..+.|+|... ..++.-.+..-.+.++..+.....-...    ...-.+..|.+.|+++++|...|.+.++|.  
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a--  182 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA--  182 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec--
Confidence            999999999999543 3333334444455555443221111111    112234468999999999999999999998  


Q ss_pred             ccccCCCCCCCCccceEeeeccC-CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-------cE--EEEEe---cCC
Q 035621          157 LVDEHTDDKNPDDLMLQKFVAHN-DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-------TH--LSTVT---FPC  223 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~--~~~~~---~~~  223 (387)
                                .+.+++..++... ..|..+.++..+  +.|+.-+.|+.||.|+++.-       ++  .+.++   ...
T Consensus       183 ----------~t~e~vas~rits~~~IK~I~~s~~g--~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~  250 (405)
T KOG1273|consen  183 ----------ETLECVASFRITSVQAIKQIIVSRKG--RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL  250 (405)
T ss_pred             ----------chheeeeeeeechheeeeEEEEeccC--cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence                      5556677666655 788889888774  89999999999999998631       11  11111   234


Q ss_pred             ceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeeccccc-ccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          224 AIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHD-GVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       224 ~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      +-.+++|+.+|.|+++++. ...+|+|....+.         ++..+.+.. .....+.|+|-...+++- ..|.|+||.
T Consensus       251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs---------LVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~  320 (405)
T KOG1273|consen  251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS---------LVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA  320 (405)
T ss_pred             hhhheeecCCccEEEeccccceeEEEEecCCcc---------eeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence            5678999999999999875 6789999988743         333333444 467789999988888877 788999998


Q ss_pred             CCCcc
Q 035621          302 IEKRQ  306 (387)
Q Consensus       302 ~~~~~  306 (387)
                      ...-+
T Consensus       321 ~~~~e  325 (405)
T KOG1273|consen  321 VVQVE  325 (405)
T ss_pred             eeccc
Confidence            65443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=2.6e-26  Score=195.50  Aligned_cols=280  Identities=15%  Similarity=0.211  Sum_probs=202.8

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCce------eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc--
Q 035621            8 NEVILTSSPEGPITAYNPSSGAI------LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN--   79 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~--   79 (387)
                      ..+|+.+.+||.|.++|......      +..+..|...|..+.|.|    ....|++++.|.++++||+++.+....  
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap----ge~~lVsasGDsT~r~Wdvk~s~l~G~~~  139 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP----GESLLVSASGDSTIRPWDVKTSRLVGGRL  139 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC----CceeEEEccCCceeeeeeeccceeeccee
Confidence            35799999999999999865433      355678999999999999    445666799999999999998877664  


Q ss_pred             -cCCCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCc---------------------------eeEEccCCCCCeEE
Q 035621           80 -IPVPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGD---------------------------ILRSFSAHDKPVSC  130 (387)
Q Consensus        80 -~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~---------------------------~~~~~~~~~~~v~~  130 (387)
                       +.|...|..++|.|. ...+++|+.||.|.|||++-..                           .+...+++...|.+
T Consensus       140 ~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~s  219 (720)
T KOG0321|consen  140 NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFS  219 (720)
T ss_pred             ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceee
Confidence             558899999999995 5678899999999999985321                           11122334444555


Q ss_pred             ---EEEcCCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeecc---CCCeEEEEEeeCCCCceEEEEeCCC
Q 035621          131 ---LKISPDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH---NDSVTAITCCIGSFNSIIISCSMDC  203 (387)
Q Consensus       131 ---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~s~~~d~  203 (387)
                         +.+..|...|++++. |+.|++||+++........    ......+..|   .-.+.++..  +..|.+|++.+.|+
T Consensus       220 svTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e----p~~~~~~~t~skrs~G~~nL~l--DssGt~L~AsCtD~  293 (720)
T KOG0321|consen  220 SVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQE----PRGSDKYPTHSKRSVGQVNLIL--DSSGTYLFASCTDN  293 (720)
T ss_pred             eeEEEEEeccceeeeccCCCcceEEEeecccccccccC----CCcccCccCcccceeeeEEEEe--cCCCCeEEEEecCC
Confidence               555668888999887 9999999998754432211    1122222233   224445544  44456666666799


Q ss_pred             cEEEEeCCCCc--EEEEEec---CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEE
Q 035621          204 TCKFWRLLNGT--HLSTVTF---PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS  278 (387)
Q Consensus       204 ~i~iwd~~~~~--~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  278 (387)
                      .|++|++.+..  +...+.+   ...-..-..+|++.++++|+.|...++|.+..        .......+.+|...|++
T Consensus       294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~--------~e~~~~~l~Ght~eVt~  365 (720)
T KOG0321|consen  294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS--------PEAPPALLLGHTREVTT  365 (720)
T ss_pred             cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC--------ccCChhhhhCcceEEEE
Confidence            99999998643  2333321   12233456789999999999999999999987        33444455689999999


Q ss_pred             EEEecCC-CEEEEEeCCCcEEEEECCCc
Q 035621          279 VMMMNEG-KNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       279 ~~~s~~~-~~l~s~~~dg~i~iwd~~~~  305 (387)
                      ++|.|.. .-+++++.|..+++|++.++
T Consensus       366 V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  366 VRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             EeeccccCCCceeeccCcceEEEeccCc
Confidence            9998743 34677799999999999765

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.2e-27  Score=176.12  Aligned_cols=250  Identities=17%  Similarity=0.209  Sum_probs=194.9

Q ss_pred             cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc---ccccC-CCCCeeeEEecc--CCCEEEEecCCCcEE
Q 035621           35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP---LHNIP-VPEPVAPLATTA--DGSYLFTGGLSGNVY  108 (387)
Q Consensus        35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~---~~~~~-~~~~v~~~~~~~--~~~~l~~~~~dg~i~  108 (387)
                      ..|.+.|..+...-    ...+++|++.|++|+|+.+..+..   +.++. |.+||..++|..  .|.+||+++.||.|.
T Consensus         8 t~H~D~IHda~lDy----ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI   83 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDY----YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhHhhhhh----hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence            45777777766554    556778899999999999977654   33333 789999999976  799999999999999


Q ss_pred             EEeCCCCc--eeEEccCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEE
Q 035621          109 AISVPKGD--ILRSFSAHDKPVSCLKISPD--GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTA  184 (387)
Q Consensus       109 i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  184 (387)
                      ||.-++++  .......|...|++++|.|.  |-.|++++.||.|.+.+.+..         ......+....|.-.|++
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~---------g~w~t~ki~~aH~~Gvns  154 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS---------GGWTTSKIVFAHEIGVNS  154 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC---------CCccchhhhhccccccce
Confidence            99987774  34456689999999999995  568999999999999988432         122233455789999999


Q ss_pred             EEEeeCCCC------------ceEEEEeCCCcEEEEeCCCCc--EEEEEe-cCCceeEEEeCCCC----CeEEEEccCCc
Q 035621          185 ITCCIGSFN------------SIIISCSMDCTCKFWRLLNGT--HLSTVT-FPCAIMGLALDPTE----TDFFAAGSDGL  245 (387)
Q Consensus       185 ~~~~~~~~~------------~~l~s~~~d~~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~----~~l~~~~~dg~  245 (387)
                      ++|.|....            ..|++|+.|..|+||+..+++  ...++. |..-|+.++|.|.-    .+|++++.||+
T Consensus       155 Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~  234 (299)
T KOG1332|consen  155 VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT  234 (299)
T ss_pred             eeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence            999987322            469999999999999998863  222344 77889999999964    57999999999


Q ss_pred             EEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          246 IYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       246 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      +.||.........      ...++......+..+.||+.|+.|+.++.|+.|.+|.-.
T Consensus       235 viIwt~~~e~e~w------k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  235 VIIWTKDEEYEPW------KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             EEEEEecCccCcc------cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            9999877421111      112223356789999999999999999999999999744

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=4.8e-26  Score=186.55  Aligned_cols=281  Identities=15%  Similarity=0.192  Sum_probs=215.0

Q ss_pred             ccccCCC--cEEEeeCCCCcEEEEeCCCC----ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC
Q 035621            2 LHHLPCN--EVILTSSPEGPITAYNPSSG----AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST   75 (387)
Q Consensus         2 l~~s~~~--~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~   75 (387)
                      ++|+|..  +++|+|...|.|-+||+.+.    .-+..+..|..+|.++.|+|.   ..+.+++.+.||+|++-|++.+.
T Consensus       192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~---n~s~i~ssSyDGtiR~~D~~~~i  268 (498)
T KOG4328|consen  192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA---NTSQIYSSSYDGTIRLQDFEGNI  268 (498)
T ss_pred             EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC---ChhheeeeccCceeeeeeecchh
Confidence            6899975  58899999999999999422    235567889999999999994   34566678999999999998775


Q ss_pred             cccccCC---CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce-eEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEE
Q 035621           76 PLHNIPV---PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI-LRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIA  150 (387)
Q Consensus        76 ~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~  150 (387)
                      ....+..   ...+..+.|+.+...++++..=|...+||++++.. ...+.-|...|++++++| ...+|++++.|++.+
T Consensus       269 ~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~k  348 (498)
T KOG4328|consen  269 SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAK  348 (498)
T ss_pred             hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCccee
Confidence            4433333   24577888998888888888778999999988754 556677888999999999 456899999999999


Q ss_pred             EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeC----CCCcEEEEEecCC---
Q 035621          151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRL----LNGTHLSTVTFPC---  223 (387)
Q Consensus       151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~----~~~~~~~~~~~~~---  223 (387)
                      |||++++....+        ++.....|...|.+..|+|.+ +. |+|.+.|..|+|||.    ....+...+.|+.   
T Consensus       349 IWD~R~l~~K~s--------p~lst~~HrrsV~sAyFSPs~-gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~  418 (498)
T KOG4328|consen  349 IWDLRQLRGKAS--------PFLSTLPHRRSVNSAYFSPSG-GT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTG  418 (498)
T ss_pred             eeehhhhcCCCC--------cceecccccceeeeeEEcCCC-Cc-eEeeccCCceEEeecccccccCCccceeeccCccc
Confidence            999987643321        355666899999999999997 44 899999999999998    3455666776643   


Q ss_pred             ---ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEE-EEecCCCEEEEE-eCCCcEE
Q 035621          224 ---AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV-MMMNEGKNLVSA-AEDGSVY  298 (387)
Q Consensus       224 ---~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~-~~dg~i~  298 (387)
                         ......|.|+..++++|..-..|-++|-..+        +.+.++.......|.++ .|+|-+..+++| +..|.|+
T Consensus       419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~--------q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~  490 (498)
T KOG4328|consen  419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG--------QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIY  490 (498)
T ss_pred             ccccchhheeCCCccEEEEeccCcceeEEcCCCC--------EEeeeccCccccccccceeecccccceeccCCccceEE
Confidence               3457799999999999999889999998763        22333222223344443 789988855555 5677888


Q ss_pred             EEECC
Q 035621          299 IWEIE  303 (387)
Q Consensus       299 iwd~~  303 (387)
                      ||--+
T Consensus       491 vft~k  495 (498)
T KOG4328|consen  491 VFTNK  495 (498)
T ss_pred             EEecC
Confidence            88644

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=8.3e-26  Score=200.03  Aligned_cols=242  Identities=17%  Similarity=0.234  Sum_probs=202.7

Q ss_pred             CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC-CcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCC
Q 035621           36 GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-TPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVP  113 (387)
Q Consensus        36 ~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  113 (387)
                      .|....+.++|.|++.    .+.+++.||.|++|+.... +....+. +...|.+++..  +.+|++|+.+++|.+|.+.
T Consensus        11 aht~G~t~i~~d~~ge----fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGE----FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hccCceEEEEEcCCCC----EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCC
Confidence            5888889999999654    4556999999999998666 5555555 66777777764  4589999999999999999


Q ss_pred             CCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCC
Q 035621          114 KGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFN  193 (387)
Q Consensus       114 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  193 (387)
                      +++.-..+....-++++++|+.+|++++.|+.|-.|++.++            ......+.+.+|.++|.++.++|.+  
T Consensus        85 s~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~------------~D~s~~~~lrgh~apVl~l~~~p~~--  150 (933)
T KOG1274|consen   85 SGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNL------------DDSSQEKVLRGHDAPVLQLSYDPKG--  150 (933)
T ss_pred             CCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEec------------cccchheeecccCCceeeeeEcCCC--
Confidence            88766556666788999999999999999999999999998            5666778899999999999999985  


Q ss_pred             ceEEEEeCCCcEEEEeCCCCcEEEEEe---------cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccce
Q 035621          194 SIIISCSMDCTCKFWRLLNGTHLSTVT---------FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQE  264 (387)
Q Consensus       194 ~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  264 (387)
                      ++|++.+-||.|++||+.++.+..++.         ....+..++|+|++..+++.+.|+.|.+|+...........   
T Consensus       151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr---  227 (933)
T KOG1274|consen  151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR---  227 (933)
T ss_pred             CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec---
Confidence            999999999999999999988776664         13457789999999999999999999999998854332221   


Q ss_pred             eEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          265 LVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       265 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                          ...+...+..++|+|+|+|||+++.||.|.|||+++
T Consensus       228 ----~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  228 ----DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ----ccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence                123444599999999999999999999999999996

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=8.6e-27  Score=193.22  Aligned_cols=258  Identities=19%  Similarity=0.286  Sum_probs=210.4

Q ss_pred             CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC---CcccccC---CCCCeeeEEeccCCCEEEEecCCCcEEEE
Q 035621           37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS---TPLHNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAI  110 (387)
Q Consensus        37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~---~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  110 (387)
                      |..-|.+++.+...    .+++ .+..|.|+|||+...   .++..+.   ...-+..+.+.|||+.|++|+.-.++.||
T Consensus       418 HGEvVcAvtIS~~t----rhVy-TgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW  492 (705)
T KOG0639|consen  418 HGEVVCAVTISNPT----RHVY-TGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW  492 (705)
T ss_pred             cCcEEEEEEecCCc----ceeE-ecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence            66667777777622    2333 356789999999543   2333333   34568999999999999999999999999


Q ss_pred             eCCCCcee--EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEe
Q 035621          111 SVPKGDIL--RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC  188 (387)
Q Consensus       111 d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  188 (387)
                      |+....+.  ..+....-....++.+||.+..++++.||.|.|||+            .+...++.+++|.+.+.||.++
T Consensus       493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDL------------hnq~~VrqfqGhtDGascIdis  560 (705)
T KOG0639|consen  493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDL------------HNQTLVRQFQGHTDGASCIDIS  560 (705)
T ss_pred             eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEc------------ccceeeecccCCCCCceeEEec
Confidence            99765432  233333345678899999999999999999999999            6788899999999999999999


Q ss_pred             eCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEee
Q 035621          189 IGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL  268 (387)
Q Consensus       189 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  268 (387)
                      +++  ..|-||+-|.+||.||++++..+....+.+.|.++.++|.+.++++|-.++.+.+.......+.          .
T Consensus       561 ~dG--tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky----------q  628 (705)
T KOG0639|consen  561 KDG--TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY----------Q  628 (705)
T ss_pred             CCC--ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccce----------e
Confidence            885  8999999999999999999999999999999999999999999999999999988877653322          2


Q ss_pred             cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621          269 ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       269 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  325 (387)
                      +.-|...|.++.|.+.|+++++.+.|..+..|...-|..+...+..  .+|.+..++
T Consensus       629 lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~--SsVlsCDIS  683 (705)
T KOG0639|consen  629 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES--SSVLSCDIS  683 (705)
T ss_pred             ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc--Ccceeeeec
Confidence            2358999999999999999999999999999999999888777654  356555443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.95  E-value=6.6e-26  Score=187.72  Aligned_cols=283  Identities=13%  Similarity=0.160  Sum_probs=216.1

Q ss_pred             CcEEEEeCCCCceeEeccCCCCC--ceeEEEcCccceeeeccccCCCCCeEEEEEccCC--Cccc-ccCCCCCeeeEEec
Q 035621           18 GPITAYNPSSGAILAHFSGSRSP--RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--TPLH-NIPVPEPVAPLATT   92 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~~~~-~~~~~~~v~~~~~~   92 (387)
                      ..+++||....+....+..|..+  +.++.|+....+   ..++.+.|..+++|.-...  +... .......-.|++..
T Consensus        12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~l---vvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~   88 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFL---VVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACA   88 (673)
T ss_pred             CceEEeecccccCccccccCCCCCcceeeeccccceE---EEeecCCceeEEEecccCCCCccceeeccccchHHHHhhh
Confidence            47999999877666556544433  888899875422   2234788999999975332  1111 11122345566666


Q ss_pred             cCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccce
Q 035621           93 ADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML  172 (387)
Q Consensus        93 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  172 (387)
                      ....++++|+..+.|+|||++...+.+.+++|+..|+++.++-...+|++++..|.|.+..+            .+....
T Consensus        89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~------------~t~~~t  156 (673)
T KOG4378|consen   89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT------------KTKQKT  156 (673)
T ss_pred             hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEec------------ccCccc
Confidence            66689999999999999999977777888999999999999999999999999999999988            333333


Q ss_pred             Eeeecc-CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCC-CeEEEEccCCcEEE
Q 035621          173 QKFVAH-NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTE-TDFFAAGSDGLIYK  248 (387)
Q Consensus       173 ~~~~~~-~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~-~~l~~~~~dg~i~i  248 (387)
                      ..+... ...|.-+.+++.. ..+|.+++.+|.|.+||+....++..+.  |..+...++|+|.. ..|++.+.|..|++
T Consensus       157 t~f~~~sgqsvRll~ys~sk-r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~  235 (673)
T KOG4378|consen  157 TTFTIDSGQSVRLLRYSPSK-RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI  235 (673)
T ss_pred             cceecCCCCeEEEeeccccc-ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence            444333 3456688898886 5788899999999999999888877765  78899999999976 56677799999999


Q ss_pred             EeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc-cEEEEeecccCCCceeEEEEec
Q 035621          249 GLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR-QVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       249 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      ||......        ...+  ....+...++|+++|.+|+.|...|.|..||++.. .++..+..|. ..|++++|-+.
T Consensus       236 yD~~s~~s--------~~~l--~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~-~sVt~vafq~s  304 (673)
T KOG4378|consen  236 YDIRSQAS--------TDRL--TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD-ASVTRVAFQPS  304 (673)
T ss_pred             eecccccc--------ccee--eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc-cceeEEEeeec
Confidence            99986321        1112  34567899999999999999999999999999874 5677776664 48999999876

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=2.9e-26  Score=193.80  Aligned_cols=283  Identities=14%  Similarity=0.150  Sum_probs=217.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccc-----------------------
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHIS-----------------------   58 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------------   58 (387)
                      ++..|.|..|++|+.||+|+||.+.||.++++++ ..+.|.+++|+|...+..-..+                       
T Consensus       406 iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~e  484 (733)
T KOG0650|consen  406 ISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKE  484 (733)
T ss_pred             EEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhh
Confidence            4567899999999999999999999999999887 4557999999985432211111                       


Q ss_pred             ---c----CCCCCeEEEEEccCCC-----cccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCCCceeEEccC
Q 035621           59 ---P----TTGSGSVHLYNLWSST-----PLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPKGDILRSFSA  123 (387)
Q Consensus        59 ---~----~~~d~~v~vw~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~  123 (387)
                         +    ...++.+..|.-....     ....+.+..+|..+.|+..|.||++...+   ..|.|+++.......-|+.
T Consensus       485 ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k  564 (733)
T KOG0650|consen  485 LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK  564 (733)
T ss_pred             hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhh
Confidence               0    1123445566543211     12345578899999999999999987654   4799999987766666766


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621          124 HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC  203 (387)
Q Consensus       124 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~  203 (387)
                      ..+.|.++.|+|...+|++++. ..|++||+            .....++.+......|..++.+|.+  ..|+.++.|+
T Consensus       565 skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL------------~kqelvKkL~tg~kwiS~msihp~G--Dnli~gs~d~  629 (733)
T KOG0650|consen  565 SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDL------------SKQELVKKLLTGSKWISSMSIHPNG--DNLILGSYDK  629 (733)
T ss_pred             cCCceeEEEecCCCceEEEEec-cceEEEeh------------hHHHHHHHHhcCCeeeeeeeecCCC--CeEEEecCCC
Confidence            6788999999999999988876 68999999            4556666676677789999999986  7788999999


Q ss_pred             cEEEEeCCCC-cEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeeccccccc----EE
Q 035621          204 TCKFWRLLNG-THLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGV----VV  277 (387)
Q Consensus       204 ~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~----v~  277 (387)
                      .+..||+.-. ++.+++. |...+++++|++.-.++++|+.||.+.++--.-...............+.+|...    |.
T Consensus       630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVL  709 (733)
T KOG0650|consen  630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVL  709 (733)
T ss_pred             eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceE
Confidence            9999999755 4455555 6789999999999999999999999999865543322222223344455677765    99


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEE
Q 035621          278 SVMMMNEGKNLVSAAEDGSVYIW  300 (387)
Q Consensus       278 ~~~~s~~~~~l~s~~~dg~i~iw  300 (387)
                      .+.|+|...+|++++.||+|++|
T Consensus       710 d~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  710 DTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eecccCCCceEEecCCCceEEee
Confidence            99999999999999999999998

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.8e-26  Score=178.56  Aligned_cols=270  Identities=11%  Similarity=0.174  Sum_probs=217.8

Q ss_pred             ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNV  107 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i  107 (387)
                      ++++.+.+|...|+.++......+.+    +++.|.+.++|.++++.++..+. |.+.|+++.|++.+.++++++.|++-
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~g----tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICG----TASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETA  214 (481)
T ss_pred             eehhhhcccccceeeehhhcCCccee----ecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcch
Confidence            45677889999999998876444444    48999999999999999998887 67899999999999999999999999


Q ss_pred             EEEeC------CCC----------------------------------ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC
Q 035621          108 YAISV------PKG----------------------------------DILRSFSAHDKPVSCLKISPDGSLLISGGDDG  147 (387)
Q Consensus       108 ~i~d~------~~~----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  147 (387)
                      +||..      ...                                  .++..+.+|.+.|.+..|-..|+.+++++.|.
T Consensus       215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR  294 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR  294 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence            99972      110                                  14566788999999999999999999999999


Q ss_pred             cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-cEEEEEe-cCCce
Q 035621          148 VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-THLSTVT-FPCAI  225 (387)
Q Consensus       148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~v  225 (387)
                      +..+||+            +++..+..+.+|....+.++-+|..  +++++.+.|.+.++||++.. ..+..|+ |...|
T Consensus       295 TAnlwDV------------Etge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtV  360 (481)
T KOG0300|consen  295 TANLWDV------------ETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTV  360 (481)
T ss_pred             cceeeee------------ccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeeecccccce
Confidence            9999999            7888999999999999999888875  89999999999999999843 3344555 77899


Q ss_pred             eEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621          226 MGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       226 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  305 (387)
                      +++.|..+. .+++|+.|.+|++||+++..       .++..+  ....+++.++.+..+..|+.--.+..|++||+...
T Consensus       361 TS~vF~~dd-~vVSgSDDrTvKvWdLrNMR-------splATI--RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~  430 (481)
T KOG0300|consen  361 TSVVFNTDD-RVVSGSDDRTVKVWDLRNMR-------SPLATI--RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN  430 (481)
T ss_pred             eEEEEecCC-ceeecCCCceEEEeeecccc-------Ccceee--ecCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence            999998764 68899999999999999732       222222  24678999999988889998888899999999866


Q ss_pred             cEEEEeec---ccCCCceeEEEEe
Q 035621          306 QVVMVLKN---ELAGSISEMVIAT  326 (387)
Q Consensus       306 ~~~~~~~~---~~~~~v~~~~~~~  326 (387)
                      ++-+.-..   .+...|++.+++.
T Consensus       431 RlaRlPrtsRqgHrRMV~c~AW~e  454 (481)
T KOG0300|consen  431 RLARLPRTSRQGHRRMVTCCAWLE  454 (481)
T ss_pred             ccccCCcccccccceeeeeeeccc
Confidence            54432211   1223555555543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.5e-24  Score=186.08  Aligned_cols=276  Identities=21%  Similarity=0.247  Sum_probs=222.5

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc-eeEeccCCCC-CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA-ILAHFSGSRS-PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~   79 (387)
                      ||||.+.+.||.+-.+|.|.||++..+- ....+.++.. .|.+++|.+...     |++.+.+|.|.-||+.++++...
T Consensus        31 lA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R-----LFS~g~sg~i~EwDl~~lk~~~~  105 (691)
T KOG2048|consen   31 LAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR-----LFSSGLSGSITEWDLHTLKQKYN  105 (691)
T ss_pred             EEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe-----EEeecCCceEEEEecccCceeEE
Confidence            6889999999999999999999998653 3445555544 599999996443     33478999999999999999888


Q ss_pred             cCC-CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE--EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621           80 IPV-PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR--SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        80 ~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      +.. .+.|.+++.+|.+..++.|+.||.+..++...++...  .+...++.|.++.|+|++..++.|+.||.|++||...
T Consensus       106 ~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~  185 (691)
T KOG2048|consen  106 IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS  185 (691)
T ss_pred             ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence            874 5789999999999999999999988888887776543  3445568999999999999999999999999999943


Q ss_pred             ccccCCCCCCCCccceEe-------eec-cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeE
Q 035621          157 LVDEHTDDKNPDDLMLQK-------FVA-HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMG  227 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~-------~~~-~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~  227 (387)
                                  +..+..       +.. ...-|+++.+..+   ..+++|..-|+|.+||...+..++.+. |...|.+
T Consensus       186 ------------~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd---~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~  250 (691)
T KOG2048|consen  186 ------------GQTLHIITMQLDRLSKREPTIVWSVLFLRD---STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLA  250 (691)
T ss_pred             ------------CceEEEeeecccccccCCceEEEEEEEeec---CcEEEecCCceEEEEcccCcchhhhhhhhhcceeE
Confidence                        222221       111 2234677777755   689999999999999999999999887 7899999


Q ss_pred             EEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      ++..++++++++++.|+.|..|........     .........|...|.+++..++  .+++|+.|..+.+-....
T Consensus       251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-----wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE-----WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             EEEcCCCCeEEEccCCCceEEEEecCCccc-----eeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence            999999999999999999999988775432     1222223468889999999877  899999999988866554

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.95  E-value=2.4e-25  Score=191.35  Aligned_cols=310  Identities=13%  Similarity=0.147  Sum_probs=229.7

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCc---------------------ee----------EeccCCCCCceeEEEcCccceeeec
Q 035621            8 NEVILTSSPEGPITAYNPSSGA---------------------IL----------AHFSGSRSPRRGLTFAGKPFIAASH   56 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~---------------------~~----------~~~~~~~~~v~~~~~~~~~~~~~~~   56 (387)
                      .-+||+++.|..|+||.+.-+.                     ..          ..+.||.+.|.++.|+|..    ..
T Consensus       206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~----~~  281 (764)
T KOG1063|consen  206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEG----LD  281 (764)
T ss_pred             cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccch----hh
Confidence            3589999999999999873221                     11          1224899999999999954    44


Q ss_pred             cccCCCCCeEEEEEccCCCcc--cccC-----C-CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC---ceeEEccCCC
Q 035621           57 ISPTTGSGSVHLYNLWSSTPL--HNIP-----V-PEPVAPLATTADGSYLFTGGLSGNVYAISVPKG---DILRSFSAHD  125 (387)
Q Consensus        57 ~~~~~~d~~v~vw~~~~~~~~--~~~~-----~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~  125 (387)
                      +.+++.|.++.+|...+..-+  ....     + ........|+|+++.+++-+..|..++|..++.   .+...+.+|.
T Consensus       282 LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~  361 (764)
T KOG1063|consen  282 LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV  361 (764)
T ss_pred             heecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence            556899999999987654211  1111     1 235788999999999999999999999983332   2334567999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc----------------------cc-c----------------------
Q 035621          126 KPVSCLKISPDGSLLISGGDDGVIATVPIFQL----------------------VD-E----------------------  160 (387)
Q Consensus       126 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------~~-~----------------------  160 (387)
                      ..|+.++|+|.|.+|++.+.|.+-|+|--...                      .+ .                      
T Consensus       362 ~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv  441 (764)
T KOG1063|consen  362 DGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV  441 (764)
T ss_pred             ccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence            99999999999999999999988877644200                      00 0                      


Q ss_pred             ---------------------------------CCCCCC--------------------------------CCccceEee
Q 035621          161 ---------------------------------HTDDKN--------------------------------PDDLMLQKF  175 (387)
Q Consensus       161 ---------------------------------~~~~~~--------------------------------~~~~~~~~~  175 (387)
                                                       .....+                                .....++.+
T Consensus       442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL  521 (764)
T KOG1063|consen  442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL  521 (764)
T ss_pred             HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence                                             000000                                000123345


Q ss_pred             eccCCCeEEEEEeeCCCCceEEEEeCCC-----cEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEE
Q 035621          176 VAHNDSVTAITCCIGSFNSIIISCSMDC-----TCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKG  249 (387)
Q Consensus       176 ~~~~~~i~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  249 (387)
                      .+|...|.+++.+|++  ++++++....     .|++|+..+......+. |.-.|+.++|+|||++|++.+.|..+.+|
T Consensus       522 YGHGyEv~~l~~s~~g--nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~  599 (764)
T KOG1063|consen  522 YGHGYEVYALAISPTG--NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY  599 (764)
T ss_pred             ccCceeEEEEEecCCC--CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence            6888999999999885  9999988653     58999999888877776 77899999999999999999999999999


Q ss_pred             eccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc--cEEEE-eecccCCCceeEEEEe
Q 035621          250 LLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR--QVVMV-LKNELAGSISEMVIAT  326 (387)
Q Consensus       250 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~-~~~~~~~~v~~~~~~~  326 (387)
                      ..........    . ....+.|..-|+++.|+|++.+|+|++.|.+|++|.....  +.+.. -...+..+||.+.+.+
T Consensus       600 ~~~~~~~~e~----~-fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  600 EVQEDIKDEF----R-FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             eeecccchhh----h-hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence            9855322111    1 1224689999999999999999999999999999999888  55554 2334566888887766


Q ss_pred             cC
Q 035621          327 GI  328 (387)
Q Consensus       327 ~~  328 (387)
                      -.
T Consensus       675 ~~  676 (764)
T KOG1063|consen  675 VD  676 (764)
T ss_pred             cc
Confidence            43

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.4e-27  Score=205.97  Aligned_cols=257  Identities=16%  Similarity=0.252  Sum_probs=218.3

Q ss_pred             CCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCC
Q 035621            6 PCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPE   84 (387)
Q Consensus         6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~   84 (387)
                      |-+.+++....+-.+++||.+      .+..|...+.++..-.    ....+++|+.|..+-+|.+.....+..+. |..
T Consensus         2 ~~~~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~----s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes   71 (825)
T KOG0267|consen    2 PGMEFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRK----SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES   71 (825)
T ss_pred             Ccccccceeeeeeccccccch------hhhhhhhhhceeeeec----cceeeccCCCceeeccccccCCchhheeeccCC
Confidence            444556666666778888863      3445677777776533    23345568899999999998877777754 778


Q ss_pred             CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCC
Q 035621           85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDD  164 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  164 (387)
                      +|.++.|+++..+|++|..+|+|++||++.++.++++.+|...+.++.|+|-+.+.++|+.|+.+++||+          
T Consensus        72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~----------  141 (825)
T KOG0267|consen   72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI----------  141 (825)
T ss_pred             cceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhh----------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999          


Q ss_pred             CCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccC
Q 035621          165 KNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSD  243 (387)
Q Consensus       165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d  243 (387)
                        ....+.+.+.+|...+..+.|+|++  .+++.++.|.+++|||+..|+.+..|. |...+..+.|+|..-.++.|+.|
T Consensus       142 --Rk~Gc~~~~~s~~~vv~~l~lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d  217 (825)
T KOG0267|consen  142 --RKKGCSHTYKSHTRVVDVLRLSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSD  217 (825)
T ss_pred             --hccCceeeecCCcceeEEEeecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCC
Confidence              5567888999999999999999985  999999999999999999999999998 88999999999999999999999


Q ss_pred             CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621          244 GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG  295 (387)
Q Consensus       244 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  295 (387)
                      +.+++||+++.         ++..........|.+.+|+|+++.+++|..+.
T Consensus       218 ~tv~f~dletf---------e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  218 RTVRFWDLETF---------EVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ceeeeecccee---------EEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            99999999962         22222234467899999999999999987654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=8.9e-26  Score=184.95  Aligned_cols=213  Identities=18%  Similarity=0.169  Sum_probs=169.9

Q ss_pred             ccCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCc----------eeEEccCCCCCeEEEEEcCCC-CEEEEEeCC
Q 035621           79 NIPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGD----------ILRSFSAHDKPVSCLKISPDG-SLLISGGDD  146 (387)
Q Consensus        79 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  146 (387)
                      .+.|++.|+.+.+.|+. ..+++++..+.+.|||.....          +-..+.+|...=.+++|++.. -.|++++.|
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            35578889999999965 556677788999999984321          223677898877889999954 489999999


Q ss_pred             CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC--CcEEEEEe-cCC
Q 035621          147 GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN--GTHLSTVT-FPC  223 (387)
Q Consensus       147 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~-~~~  223 (387)
                      +.|++||+......     .....+...+.+|...|..++|++.. ..+|++++.|+.+.|||+++  .++..... |..
T Consensus       200 ~~i~lwdi~~~~~~-----~~~~~p~~~~~~h~~~VeDV~~h~~h-~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~  273 (422)
T KOG0264|consen  200 HTICLWDINAESKE-----DKVVDPKTIFSGHEDVVEDVAWHPLH-EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA  273 (422)
T ss_pred             CcEEEEeccccccC-----CccccceEEeecCCcceehhhccccc-hhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence            99999999543221     13355677889999999999999986 68999999999999999995  44444444 789


Q ss_pred             ceeEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCCCcEEEEE
Q 035621          224 AIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWE  301 (387)
Q Consensus       224 ~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd  301 (387)
                      .++|++|+|-+ ..||+|+.|++|.+||+++-        ......+.+|...|.++.|+|.. ..||+++.|+.+.|||
T Consensus       274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL--------~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD  345 (422)
T KOG0264|consen  274 EVNCVAFNPFNEFILATGSADKTVALWDLRNL--------NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD  345 (422)
T ss_pred             ceeEEEeCCCCCceEEeccCCCcEEEeechhc--------ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence            99999999965 56777888999999999983        33444556899999999999975 5888999999999999


Q ss_pred             CCCc
Q 035621          302 IEKR  305 (387)
Q Consensus       302 ~~~~  305 (387)
                      +..-
T Consensus       346 ls~i  349 (422)
T KOG0264|consen  346 LSRI  349 (422)
T ss_pred             cccc
Confidence            9763

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.9e-27  Score=205.09  Aligned_cols=220  Identities=17%  Similarity=0.323  Sum_probs=198.1

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCC
Q 035621            7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEP   85 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~   85 (387)
                      .++.+++|+.|-.+-+|.+.....+..|.+|..+|.++.|+....+    ++.|+.+|+|++||++.++.++++. |...
T Consensus        39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~L----laagsasgtiK~wDleeAk~vrtLtgh~~~  114 (825)
T KOG0267|consen   39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERL----LAAGSASGTIKVWDLEEAKIVRTLTGHLLN  114 (825)
T ss_pred             cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhh----hcccccCCceeeeehhhhhhhhhhhccccC
Confidence            4678999999999999999777777789999999999999995444    4449999999999999998888776 6678


Q ss_pred             eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621           86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDK  165 (387)
Q Consensus        86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  165 (387)
                      +..+.|+|-+.+.+.|+.|+.+++||.+...+.+.+++|...+.+++|+|+|++++++++|..+++||+           
T Consensus       115 ~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~-----------  183 (825)
T KOG0267|consen  115 ITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL-----------  183 (825)
T ss_pred             cceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc-----------
Confidence            999999999999999999999999999988999999999999999999999999999999999999999           


Q ss_pred             CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCC
Q 035621          166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDG  244 (387)
Q Consensus       166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg  244 (387)
                       ..++....|..|.+.+.++.|+|..  -++++|+.|+++++||+++.+.+.... ....|.+.+|+|++..+++|....
T Consensus       184 -~agk~~~ef~~~e~~v~sle~hp~e--~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  184 -TAGKLSKEFKSHEGKVQSLEFHPLE--VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             -cccccccccccccccccccccCchh--hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence             6788889999999999999999885  889999999999999999888777765 467899999999999998887643

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.1e-26  Score=201.93  Aligned_cols=232  Identities=18%  Similarity=0.312  Sum_probs=188.0

Q ss_pred             CCcEEEeeCCCCcEEEEeCCC---CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC-
Q 035621            7 CNEVILTSSPEGPITAYNPSS---GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV-   82 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~-   82 (387)
                      +.++|||++..|.|.+||+..   .+.+..|..|...++++.|++.   ....+++|+.||.|++||++..+...++.. 
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~t---ep~iliSGSQDg~vK~~DlR~~~S~~t~~~n  175 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHST---EPNILISGSQDGTVKCWDLRSKKSKSTFRSN  175 (839)
T ss_pred             hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccC---CccEEEecCCCceEEEEeeeccccccccccc
Confidence            467999999999999999976   5667788999999999999983   345566799999999999998887777664 


Q ss_pred             CCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           83 PEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        83 ~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                      .+.|..+.|+| .+.+++++...|.+++||++.. ++...+.+|.++|.|+.|+|++.+|++|+.|+.|+|||...    
T Consensus       176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~----  251 (839)
T KOG0269|consen  176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD----  251 (839)
T ss_pred             chhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC----
Confidence            47899999999 6788999999999999999865 55677889999999999999999999999999999999932    


Q ss_pred             CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC--CCcEEEEeCCCCcE-EEEEe-cCCceeEEEeCC-CCC
Q 035621          161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM--DCTCKFWRLLNGTH-LSTVT-FPCAIMGLALDP-TET  235 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~-~~~~~-~~~~v~~~~~~~-~~~  235 (387)
                            ........+ ....++.++.|.|.. ...|++++.  |-.|+|||++..-. ..++. |...++.++|.. |..
T Consensus       252 ------~~~~~~~tI-nTiapv~rVkWRP~~-~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~  323 (839)
T KOG0269|consen  252 ------SRAKPKHTI-NTIAPVGRVKWRPAR-SYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRI  323 (839)
T ss_pred             ------CCccceeEE-eecceeeeeeeccCc-cchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCce
Confidence                  122222222 235789999999986 467888765  78899999987653 34444 778888999976 446


Q ss_pred             eEEEEccCCcEEEEeccc
Q 035621          236 DFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       236 ~l~~~~~dg~i~i~d~~~  253 (387)
                      .+.+++.||.+..-.++.
T Consensus       324 ~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  324 NLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             eeEeecCccHHHHhhhhc
Confidence            788888899887665554

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.6e-26  Score=187.14  Aligned_cols=231  Identities=17%  Similarity=0.326  Sum_probs=193.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC--------
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS--------   73 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~--------   73 (387)
                      |+-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-.+|+++.|+.+    .+++++++.||.|.+|.+.+        
T Consensus        87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~d----gs~iiTgskDg~V~vW~l~~lv~a~~~~  162 (476)
T KOG0646|consen   87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDD----GSHIITGSKDGAVLVWLLTDLVSADNDH  162 (476)
T ss_pred             eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCC----CcEEEecCCCccEEEEEEEeecccccCC
Confidence            456789999999989999999999999999999999999999999994    45666799999999998732        


Q ss_pred             -CCcccccC-CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 035621           74 -STPLHNIP-VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVI  149 (387)
Q Consensus        74 -~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  149 (387)
                       .++.+.+. |.-+|+++...+.  ..++++++.|.++++||+..+.++.++. ....+.+++.+|-++.++.|+.+|.|
T Consensus       163 ~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I  241 (476)
T KOG0646|consen  163 SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKI  241 (476)
T ss_pred             CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceE
Confidence             23444444 5568999888765  4689999999999999999999988875 46789999999999999999999999


Q ss_pred             EEEeCCcccccCC----CCCCCCccceEeeeccCC--CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 035621          150 ATVPIFQLVDEHT----DDKNPDDLMLQKFVAHND--SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FP  222 (387)
Q Consensus       150 ~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~  222 (387)
                      .+.++.+....+.    .........+..+.+|.+  .|+|++++-++  .+|++|+.||.+.|||+.+.++++++. ..
T Consensus       242 ~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg--tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~k  319 (476)
T KOG0646|consen  242 FQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG--TLLLSGDEDGKVCVWDIYSKQCIRTLQTSK  319 (476)
T ss_pred             EeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc--cEEEeeCCCCCEEEEecchHHHHHHHhhhc
Confidence            9998865442221    222345567778889988  99999999885  999999999999999999999999998 78


Q ss_pred             CceeEEEeCCCCCeEEE
Q 035621          223 CAIMGLALDPTETDFFA  239 (387)
Q Consensus       223 ~~v~~~~~~~~~~~l~~  239 (387)
                      ++|+.+.+.|-.+-.+.
T Consensus       320 gpVtnL~i~~~~~~~~l  336 (476)
T KOG0646|consen  320 GPVTNLQINPLERGIIL  336 (476)
T ss_pred             cccceeEeeccccceec
Confidence            89999999775444333

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.1e-25  Score=177.91  Aligned_cols=280  Identities=19%  Similarity=0.293  Sum_probs=208.0

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC---CC-C
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP---VP-E   84 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~---~~-~   84 (387)
                      ..+|++-..|.|++||..+++.+..+++++..++.+.|....  ....+.+++.||+|++||++.......+.   ++ .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d--s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD--SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCC--CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence            468888899999999999999999999999999999998732  22345568999999999998876665554   22 4


Q ss_pred             CeeeEEeccCCCEEEEec----CCCcEEEEeCCCCce-eEEc-cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcc
Q 035621           85 PVAPLATTADGSYLFTGG----LSGNVYAISVPKGDI-LRSF-SAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQL  157 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~  157 (387)
                      +..+++....++.+++|.    .+-.|.+||++..+. +..+ ..|...|+++.|+| +.++|++|+.||.|.+||+...
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            677888877888888885    356899999998766 5544 57999999999999 6679999999999999999442


Q ss_pred             cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCC-------------c
Q 035621          158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC-------------A  224 (387)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~  224 (387)
                               .....+.....|...|.++.|...+. ..+.+-+..++..+|+++.+.+...+..+.             .
T Consensus       199 ---------~EeDaL~~viN~~sSI~~igw~~~~y-krI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY  268 (376)
T KOG1188|consen  199 ---------NEEDALLHVINHGSSIHLIGWLSKKY-KRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDY  268 (376)
T ss_pred             ---------cchhhHHHhhcccceeeeeeeecCCc-ceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhh
Confidence                     23334555556888899999987752 458888889999999999988665554221             1


Q ss_pred             eeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621          225 IMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       225 v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  302 (387)
                      +...-...+...++.++. -+...++-+........  ...+..+..+|..-|.++.|...+.++.|||+||.+.+|..
T Consensus       269 ~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~--~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  269 VINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSL--LTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             eeecccCCCcceEEEeccccCceeEEEeeecccccc--cCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            222222234455555544 66666665553221111  12333334468888999999988999999999999999996

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.9e-24  Score=168.73  Aligned_cols=268  Identities=15%  Similarity=0.156  Sum_probs=194.2

Q ss_pred             cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc----C-CCCCeeeEEecc--CCCEEEEecCCCcE
Q 035621           35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI----P-VPEPVAPLATTA--DGSYLFTGGLSGNV  107 (387)
Q Consensus        35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~----~-~~~~v~~~~~~~--~~~~l~~~~~dg~i  107 (387)
                      .+|.+-|+++.|.+    .+.++++++.|++++|||.++..-....    + |.+.|..+.|.+  -|+.+|+++.|+++
T Consensus        10 s~h~DlihdVs~D~----~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDF----YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             cCCcceeeeeeecc----cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence            46888899999998    5566777999999999997554332222    2 778899999976  58999999999999


Q ss_pred             EEEeCCCC---------ceeEEccCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee
Q 035621          108 YAISVPKG---------DILRSFSAHDKPVSCLKISP--DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV  176 (387)
Q Consensus       108 ~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  176 (387)
                      .||.-...         ....++......|+.+.|.|  -|-.|++++.||.++||+..+..+..      ......++.
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs------~W~Lq~Ei~  159 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS------QWTLQHEIQ  159 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc------cchhhhhhh
Confidence            99975211         23445666788999999999  46789999999999999985543332      122222222


Q ss_pred             -------ccCCCeEEEEEeeCCC-CceEEEEeCC-----CcEEEEeCCCCc-E---EEEEe-cCCceeEEEeCCCC----
Q 035621          177 -------AHNDSVTAITCCIGSF-NSIIISCSMD-----CTCKFWRLLNGT-H---LSTVT-FPCAIMGLALDPTE----  234 (387)
Q Consensus       177 -------~~~~~i~~~~~~~~~~-~~~l~s~~~d-----~~i~iwd~~~~~-~---~~~~~-~~~~v~~~~~~~~~----  234 (387)
                             .+..+..|+.|+|..- ..+|+.|+.+     +.++||...... .   +.++. +..+|+.++|.|+-    
T Consensus       160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y  239 (361)
T KOG2445|consen  160 NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY  239 (361)
T ss_pred             hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence                   4667788999987642 3567777765     478899876543 2   22232 78899999999963    


Q ss_pred             CeEEEEccCCcEEEEeccccc-----------cccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          235 TDFFAAGSDGLIYKGLLKYQS-----------RQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       235 ~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      ..|++++.|| |+||.+....           .....-..+....+..|.+.|+.+.|+-.|..|++.|.||.||+|...
T Consensus       240 ~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  240 HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            5799999999 9999998421           011111223444567899999999999999999999999999999854


Q ss_pred             C---ccEEEEeec
Q 035621          304 K---RQVVMVLKN  313 (387)
Q Consensus       304 ~---~~~~~~~~~  313 (387)
                      -   .++...++.
T Consensus       319 y~n~~kC~sv~~~  331 (361)
T KOG2445|consen  319 YNNLWKCTSVLKA  331 (361)
T ss_pred             hhhhheeeeEEec
Confidence            3   344545543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=7.9e-24  Score=180.95  Aligned_cols=253  Identities=11%  Similarity=0.108  Sum_probs=185.5

Q ss_pred             ccccCCCcEE-EeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNEVI-LTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|++...   ++++..++.+++||+.+++.+..+
T Consensus        36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l---~~~~~~~~~l~~~d~~~~~~~~~~  111 (300)
T TIGR03866        36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKIL---YIANEDDNLVTVIDIETRKVLAEI  111 (300)
T ss_pred             eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEE---EEEcCCCCeEEEEECCCCeEEeEe
Confidence            5789999876 6677889999999999988887765544 5678899865432   223567899999999988877777


Q ss_pred             CCCCCeeeEEeccCCCEEEEecCCC-cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCccc
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLSG-NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISG-GDDGVIATVPIFQLV  158 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~  158 (387)
                      .....+.+++|+|++++++++..++ .+.+||.++++....+.. ...+.+++|+|++++++++ ..++.|++||+.   
T Consensus       112 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~---  187 (300)
T TIGR03866       112 PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVA---  187 (300)
T ss_pred             eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcC---
Confidence            6666678999999999999988765 567789988877655432 3356789999999988655 468999999994   


Q ss_pred             ccCCCCCCCCccceEeeeccC-----C--CeEEEEEeeCCCCce-EEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEe
Q 035621          159 DEHTDDKNPDDLMLQKFVAHN-----D--SVTAITCCIGSFNSI-IISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLAL  230 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~-----~--~i~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~  230 (387)
                               ....+..+..+.     .  ....++++|++  ++ +++.+.++.+.+||+++++....+.....+.+++|
T Consensus       188 ---------~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg--~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~  256 (300)
T TIGR03866       188 ---------TRKVIKKITFEIPGVHPEAVQPVGIKLTKDG--KTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF  256 (300)
T ss_pred             ---------cceeeeeeeecccccccccCCccceEECCCC--CEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEE
Confidence                     333333322111     1  22357778775  55 44445677899999999888877766778999999


Q ss_pred             CCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621          231 DPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN  283 (387)
Q Consensus       231 ~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  283 (387)
                      +|++++|+++. .+|.|.+||+....        .+..+ . .....+.++++|
T Consensus       257 ~~~g~~l~~~~~~~~~i~v~d~~~~~--------~~~~~-~-~~~~~~~~~~~~  300 (300)
T TIGR03866       257 TPDEKYLLTTNGVSNDVSVIDVAALK--------VIKSI-K-VGRLPWGVVVRP  300 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCc--------EEEEE-E-cccccceeEeCC
Confidence            99999998874 58999999999832        22222 1 234557777764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=9.6e-25  Score=179.02  Aligned_cols=282  Identities=16%  Similarity=0.171  Sum_probs=210.6

Q ss_pred             EeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc-----ccccCCCCCeeeEEecc-CCC
Q 035621           23 YNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP-----LHNIPVPEPVAPLATTA-DGS   96 (387)
Q Consensus        23 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~-----~~~~~~~~~v~~~~~~~-~~~   96 (387)
                      +|+.+-.....++-+.++|++++|+|...  ...+++|...|+|-+||+.+.++     ..-..|..+|.++.|+| +-.
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~--~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s  248 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTEN--RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS  248 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCc--ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh
Confidence            44444555566677889999999999432  13445599999999999953322     22234778999999999 456


Q ss_pred             EEEEecCCCcEEEEeCCCCce--eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621           97 YLFTGGLSGNVYAISVPKGDI--LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK  174 (387)
Q Consensus        97 ~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  174 (387)
                      .+++.+.||+|++-|++.+..  +.........+.++.|+.+...++.+..=|...+||++.           .+.....
T Consensus       249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~-----------~~s~~~~  317 (498)
T KOG4328|consen  249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT-----------DGSEYEN  317 (498)
T ss_pred             heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec-----------CCccchh
Confidence            788999999999999987643  333333456788899998888888888878999999953           3334555


Q ss_pred             eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-----EEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEE
Q 035621          175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-----HLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKG  249 (387)
Q Consensus       175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  249 (387)
                      +.-|...|++++++|-. ..+|+|++.|++++|||++...     .+..+.|...|.+..|+|.+..|++.+.|..|++|
T Consensus       318 ~~lh~kKI~sv~~NP~~-p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~  396 (498)
T KOG4328|consen  318 LRLHKKKITSVALNPVC-PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVF  396 (498)
T ss_pred             hhhhhcccceeecCCCC-chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEe
Confidence            66788899999999986 6899999999999999998643     25566789999999999999889999999999999


Q ss_pred             eccccccccccccceeEeecc--cccc--cEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeE
Q 035621          250 LLKYQSRQQMHKGQELVTLAN--RHDG--VVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEM  322 (387)
Q Consensus       250 d~~~~~~~~~~~~~~~~~~~~--~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  322 (387)
                      |...-...    ......+..  .+..  ......|.|+..++++|-.-..|-|+|-..++.+..+.......|.++
T Consensus       397 dss~~sa~----~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~v  469 (498)
T KOG4328|consen  397 DSSCISAK----DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSV  469 (498)
T ss_pred             eccccccc----CCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccc
Confidence            98521111    111111110  1112  245668999999999999999999999999998988776655445444

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=1.6e-23  Score=183.82  Aligned_cols=357  Identities=19%  Similarity=0.208  Sum_probs=237.0

Q ss_pred             CCCcEEEeeCCCCcEEEEeCCCC-cee----EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            6 PCNEVILTSSPEGPITAYNPSSG-AIL----AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         6 ~~~~~l~~~~~dg~i~iwd~~~~-~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      |=|..++++..++.+.||+..++ +..    ..++.....|+++. +|...  .+.++.|+.+|.+++||+.+++.+.++
T Consensus       122 ~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TY--LNKIvvGs~~G~lql~Nvrt~K~v~~f  198 (910)
T KOG1539|consen  122 PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTY--LNKIVVGSSQGRLQLWNVRTGKVVYTF  198 (910)
T ss_pred             eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhh--eeeEEEeecCCcEEEEEeccCcEEEEe
Confidence            44778888999999999998874 211    11222222266664 44322  245666899999999999999999999


Q ss_pred             C-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCccc
Q 035621           81 P-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        81 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~  158 (387)
                      + +...|+++.-+|-=..++.|..+|+|.+++++.++.+.+++...+.|++++|..||+ .+++|+..|.+.+||+.+..
T Consensus       199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk  278 (910)
T KOG1539|consen  199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK  278 (910)
T ss_pred             cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe
Confidence            8 457899999999888999999999999999999999999985569999999999987 56777778999999994321


Q ss_pred             cc------CCCCC----------------CCCccceEeee-------------ccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621          159 DE------HTDDK----------------NPDDLMLQKFV-------------AHNDSVTAITCCIGSFNSIIISCSMDC  203 (387)
Q Consensus       159 ~~------~~~~~----------------~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~~~l~s~~~d~  203 (387)
                      ..      .....                ..+...+..+.             +|..|..++.|.-.. +..+.+++.|+
T Consensus       279 l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~-g~~ilsa~~Dr  357 (910)
T KOG1539|consen  279 LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ-GHFILSAKQDR  357 (910)
T ss_pred             eeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC-cEEEEecccCc
Confidence            00      00000                00000011111             244444444443221 34455555555


Q ss_pred             cEEEEeCCCC-------c----------------------------------------------------------E-EE
Q 035621          204 TCKFWRLLNG-------T----------------------------------------------------------H-LS  217 (387)
Q Consensus       204 ~i~iwd~~~~-------~----------------------------------------------------------~-~~  217 (387)
                      +++.+++...       +                                                          . ..
T Consensus       358 t~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~  437 (910)
T KOG1539|consen  358 TLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRH  437 (910)
T ss_pred             chhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccE
Confidence            4444433100       0                                                          0 01


Q ss_pred             EEecC------CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621          218 TVTFP------CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA  291 (387)
Q Consensus       218 ~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  291 (387)
                      .+.+.      ..+++++.++.|++.+.|...|.|.+|+++++-....+-      -...|.++|+.++...-++.++++
T Consensus       438 ~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~------~~~ah~~~V~gla~D~~n~~~vsa  511 (910)
T KOG1539|consen  438 VLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG------DSPAHKGEVTGLAVDGTNRLLVSA  511 (910)
T ss_pred             EecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc------cCccccCceeEEEecCCCceEEEc
Confidence            11111      367899999999999999999999999999843221110      024799999999999999999999


Q ss_pred             eCCCcEEEEECCCccEEEEeecccCCCceeE-------EEEecCCCce-eeEEEecCC-------CCCCCCCcceeeecc
Q 035621          292 AEDGSVYIWEIEKRQVVMVLKNELAGSISEM-------VIATGIGGSR-GCGVVKTGK-------AGNDSGGGVFEMYGE  356 (387)
Q Consensus       292 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-------~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~  356 (387)
                      +.+|.+++||..+..++..+.-.  .+++++       .++...++.. .+.+..+..       .+++.....+..-++
T Consensus       512 ~~~Gilkfw~f~~k~l~~~l~l~--~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr  589 (910)
T KOG1539|consen  512 GADGILKFWDFKKKVLKKSLRLG--SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR  589 (910)
T ss_pred             cCcceEEEEecCCcceeeeeccC--CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence            99999999999999888877643  234444       2233334432 333333211       222333344555667


Q ss_pred             ceeccccccchhhhceee
Q 035621          357 KLLDLSIKNTIELENVMT  374 (387)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~  374 (387)
                      -.+..+.|.++++|+..+
T Consensus       590 WlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  590 WLISASMDSTIRTWDLPT  607 (910)
T ss_pred             EEEEeecCCcEEEEeccC
Confidence            788888899999999865

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=1.5e-24  Score=173.66  Aligned_cols=225  Identities=16%  Similarity=0.211  Sum_probs=177.8

Q ss_pred             CCcEEEeeCCCCcEEEEeCC----------------CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEE
Q 035621            7 CNEVILTSSPEGPITAYNPS----------------SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYN   70 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~   70 (387)
                      +..+.|+=+..|.|+|||+.                ..+++.++.+|...-.++.|+|-   ....+++|..-+.|++|.
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~---~~g~LlsGDc~~~I~lw~  240 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI---KTGRLLSGDCVKGIHLWE  240 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc---cccccccCccccceEeee
Confidence            34566777889999999973                23567788899999999999992   344577788889999999


Q ss_pred             ccCCCcc----cccCCCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCC---ceeEEccCCCCCeEEEEEcCCCCEEEE
Q 035621           71 LWSSTPL----HNIPVPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKG---DILRSFSAHDKPVSCLKISPDGSLLIS  142 (387)
Q Consensus        71 ~~~~~~~----~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~  142 (387)
                      ..++.-.    -...|...|..++|+|. ...|++|+.||+|+|||++.+   .++. .++|.+.|+.|.|+.+..+|++
T Consensus       241 ~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLas  319 (440)
T KOG0302|consen  241 PSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLAS  319 (440)
T ss_pred             eccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeee
Confidence            8876432    22337789999999995 468899999999999999988   3333 3789999999999998889999


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--------
Q 035621          143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT--------  214 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--------  214 (387)
                      |+.||+++|||+++.         ....++..++.|..+|+++.|+|.. ...|++++.|..|.+||+..-.        
T Consensus       320 G~DdGt~~iwDLR~~---------~~~~pVA~fk~Hk~pItsieW~p~e-~s~iaasg~D~QitiWDlsvE~D~ee~~~~  389 (440)
T KOG0302|consen  320 GGDDGTLSIWDLRQF---------KSGQPVATFKYHKAPITSIEWHPHE-DSVIAASGEDNQITIWDLSVEADEEEIDQE  389 (440)
T ss_pred             cCCCceEEEEEhhhc---------cCCCcceeEEeccCCeeEEEecccc-CceEEeccCCCcEEEEEeeccCChhhhccc
Confidence            999999999999775         4557889999999999999999986 5788888899999999985321        


Q ss_pred             -----------EEEEEecCCceeEEEeCCCC-CeEEEEccCCc
Q 035621          215 -----------HLSTVTFPCAIMGLALDPTE-TDFFAAGSDGL  245 (387)
Q Consensus       215 -----------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~  245 (387)
                                 ++.....+..+..+.|+++- .++++.+.||.
T Consensus       390 a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  390 AAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             cccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence                       22222235568889999875 45555566664

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.8e-23  Score=179.45  Aligned_cols=306  Identities=12%  Similarity=0.146  Sum_probs=216.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      |+|++ +.+|.+.+.+|.|.-||+.+++....+....++|++++.+|..    ..++.|+.||.+..++...++......
T Consensus        75 L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~----~~l~IgcddGvl~~~s~~p~~I~~~r~  149 (691)
T KOG2048|consen   75 LAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN----TILAIGCDDGVLYDFSIGPDKITYKRS  149 (691)
T ss_pred             EEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc----ceEEeecCCceEEEEecCCceEEEEee
Confidence            57884 4466777788999999999999999999999999999999944    445558999988888877665544332


Q ss_pred             ---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc-------C-CCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 035621           82 ---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS-------A-HDKPVSCLKISPDGSLLISGGDDGVIA  150 (387)
Q Consensus        82 ---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~-~~~~v~~~~~~~~~~~l~~~~~dg~i~  150 (387)
                         ..+.+.+++|+|++..++.|+.||.|++||...+..++...       . ...-|.++.|-.++ .+++|...|+|+
T Consensus       150 l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~  228 (691)
T KOG2048|consen  150 LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVT  228 (691)
T ss_pred             cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEE
Confidence               34789999999999999999999999999999887766221       1 22347788887554 699999999999


Q ss_pred             EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE---------------
Q 035621          151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH---------------  215 (387)
Q Consensus       151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------------  215 (387)
                      +||.            ..+..++.+..|...|.+++..++.  +++++++.|+.|.-|...+...               
T Consensus       229 FWd~------------~~gTLiqS~~~h~adVl~Lav~~~~--d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdv  294 (691)
T KOG2048|consen  229 FWDS------------IFGTLIQSHSCHDADVLALAVADNE--DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDV  294 (691)
T ss_pred             EEcc------------cCcchhhhhhhhhcceeEEEEcCCC--CeEEEccCCCceEEEEecCCccceeeeccccCCcccc
Confidence            9998            5666777777888888888877664  6777777777766655432210               


Q ss_pred             -------------------------------------------------------------------------------E
Q 035621          216 -------------------------------------------------------------------------------L  216 (387)
Q Consensus       216 -------------------------------------------------------------------------------~  216 (387)
                                                                                                     +
T Consensus       295 rs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~L  374 (691)
T KOG2048|consen  295 RSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHL  374 (691)
T ss_pred             eeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhh
Confidence                                                                                           0


Q ss_pred             EEE--ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc-----------------------------------
Q 035621          217 STV--TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----------------------------------  259 (387)
Q Consensus       217 ~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------------------------------  259 (387)
                      ..+  +.+..|.+.+.+|+|+.|+.+.-. ..++|.++.......                                   
T Consensus       375 lkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~l  453 (691)
T KOG2048|consen  375 LKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSL  453 (691)
T ss_pred             eeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEeccccee
Confidence            000  122357889999999999888621 233333332110000                                   


Q ss_pred             -------cccceeEee-cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCC
Q 035621          260 -------HKGQELVTL-ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIG  329 (387)
Q Consensus       260 -------~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  329 (387)
                             ...+++... ..+....|..+..+|+|++||+.+.+|.|.+|++++++.-.... ..+..+|.++|.+...
T Consensus       454 e~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~  530 (691)
T KOG2048|consen  454 EEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVR  530 (691)
T ss_pred             EEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccCcceeeeecccccc
Confidence                   000011111 11244578999999999999999999999999999887654442 2335788777764433

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=5.6e-25  Score=179.73  Aligned_cols=234  Identities=16%  Similarity=0.192  Sum_probs=182.7

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCC---cee------------------EeccCCCCCceeEEEcCccceeeeccccCCCCCe
Q 035621            7 CNEVILTSSPEGPITAYNPSSG---AIL------------------AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGS   65 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~---~~~------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~   65 (387)
                      -|+++|.|+.|..|.|||+.=.   .+.                  ..-.+|+..|.++.|+..   ....|++|+.|.+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~---~~nVLaSgsaD~T  267 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN---FRNVLASGSADKT  267 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc---cceeEEecCCCce
Confidence            3689999999999999998411   000                  112368888999999873   3445667999999


Q ss_pred             EEEEEccCCCcccccC-CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCC-CEEEE
Q 035621           66 VHLYNLWSSTPLHNIP-VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDG-SLLIS  142 (387)
Q Consensus        66 v~vw~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~  142 (387)
                      |++||+.++++...+. |..+|.++.|+| ...+|++|+.|+++.+.|.+........-...+.|-.++|.|.. ..+++
T Consensus       268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~  347 (463)
T KOG0270|consen  268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFV  347 (463)
T ss_pred             EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEE
Confidence            9999999999999999 668999999999 46789999999999999998532222111246789999999954 57888


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec-
Q 035621          143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF-  221 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-  221 (387)
                      +..||.++-+|+|+           .+.++.++++|.++|.++++++.. ..++++++.|+.+++|++....+.....+ 
T Consensus       348 ~tddG~v~~~D~R~-----------~~~~vwt~~AHd~~ISgl~~n~~~-p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~  415 (463)
T KOG0270|consen  348 STDDGTVYYFDIRN-----------PGKPVWTLKAHDDEISGLSVNIQT-PGLLSTASTDKVVKLWKFDVDSPKSVKEHS  415 (463)
T ss_pred             ecCCceEEeeecCC-----------CCCceeEEEeccCCcceEEecCCC-CcceeeccccceEEEEeecCCCCccccccc
Confidence            88999999999974           447899999999999999998775 57999999999999999876544322221 


Q ss_pred             --CCceeEEEeCCCCC-eEEEEccCCcEEEEeccccc
Q 035621          222 --PCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQS  255 (387)
Q Consensus       222 --~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  255 (387)
                        -+...|+++.|+-. .++.|+..+.+++||+.+..
T Consensus       416 ~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  416 FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             ccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence              13367778888765 46667778889999998743

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=5.2e-23  Score=170.96  Aligned_cols=272  Identities=12%  Similarity=0.139  Sum_probs=214.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...++.++.     |+.|..|..|| ..-+.++..+
T Consensus       252 v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-----GgKDRki~~Wd-~~y~k~r~~e  324 (626)
T KOG2106|consen  252 VTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-----GGKDRKIILWD-DNYRKLRETE  324 (626)
T ss_pred             EEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-----cCccceEEecc-cccccccccc
Confidence            57888886 68899999999999988887777779999999999988665543     89999999999 4555555555


Q ss_pred             CC---CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621           82 VP---EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        82 ~~---~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                      .+   +++..++=...+  |++|...+.|..=.++++-.+ ...+|......++.+|+.+.+++++.|+.+++|+-.   
T Consensus       325 lPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~---  398 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH---  398 (626)
T ss_pred             CchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEccCC---
Confidence            44   456666543333  778877777776676665443 344788899999999999999999999999999731   


Q ss_pred             ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEE
Q 035621          159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFF  238 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  238 (387)
                                  .+.-...-..+..++.|+|.+   .++.|...|...+.|.++...+.......+++++.|+|+|.+||
T Consensus       399 ------------k~~wt~~~~d~~~~~~fhpsg---~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lA  463 (626)
T KOG2106|consen  399 ------------KLEWTKIIEDPAECADFHPSG---VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLA  463 (626)
T ss_pred             ------------ceeEEEEecCceeEeeccCcc---eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEE
Confidence                        111122345688899999983   89999999999999999977766666788999999999999999


Q ss_pred             EEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621          239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV  308 (387)
Q Consensus       239 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  308 (387)
                      +|+.|+.|++|.+....       ......-..+..+|+.+.||+|+++|.+-+.|-.|..|....-+.+
T Consensus       464 vgs~d~~iyiy~Vs~~g-------~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~  526 (626)
T KOG2106|consen  464 VGSHDNHIYIYRVSANG-------RKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI  526 (626)
T ss_pred             EecCCCeEEEEEECCCC-------cEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCccc
Confidence            99999999999987643       2333333345589999999999999999999999999954443333

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=1.1e-23  Score=163.66  Aligned_cols=271  Identities=14%  Similarity=0.136  Sum_probs=203.9

Q ss_pred             cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC------------cccccC----CCCCeeeEEecc-CCCE
Q 035621           35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST------------PLHNIP----VPEPVAPLATTA-DGSY   97 (387)
Q Consensus        35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~------------~~~~~~----~~~~v~~~~~~~-~~~~   97 (387)
                      ..|.+.|+++...+.   ...++++|+.||.|.+||++...            ++-..+    |.-.|..+.|-| |...
T Consensus        40 r~HgGsvNsL~id~t---egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLT---EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             ccCCCccceeeeccc---cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence            458899999999882   33455669999999999997643            111111    345788999999 6678


Q ss_pred             EEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621           98 LFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD---GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK  174 (387)
Q Consensus        98 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  174 (387)
                      +.+++.|.++++||..+.+....|+ ..+.|.+-+++|-   ..++++|..|-.|++-|+            ..+...+.
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi------------~SGs~sH~  183 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI------------ASGSFSHT  183 (397)
T ss_pred             eecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEec------------cCCcceee
Confidence            8889999999999999998888876 4677888888883   347888889999999999            78888999


Q ss_pred             eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-cEEEEEe---------------cCCceeEEEeCCCCCeEE
Q 035621          175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-THLSTVT---------------FPCAIMGLALDPTETDFF  238 (387)
Q Consensus       175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~---------------~~~~v~~~~~~~~~~~l~  238 (387)
                      +.+|.+.|.++.|+|.. .-.|++|+.||.|++||++.. .++..+.               |.+.++.++|..++.+++
T Consensus       184 LsGHr~~vlaV~Wsp~~-e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~  262 (397)
T KOG4283|consen  184 LSGHRDGVLAVEWSPSS-EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA  262 (397)
T ss_pred             eccccCceEEEEeccCc-eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhh
Confidence            99999999999999986 578999999999999999865 3333332               446789999999999999


Q ss_pred             EEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCC
Q 035621          239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGS  318 (387)
Q Consensus       239 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  318 (387)
                      +.+.|..+++|+...+.......++...... .|. .+. +. +-+...++---.++.+.++++-+++.++.+..| -..
T Consensus       263 ~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~-~~~-~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h-~k~  337 (397)
T KOG4283|consen  263 SCGTDDRIRVWNMESGRNTLREFGPIIHNQT-TSF-AVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH-LKR  337 (397)
T ss_pred             hccCccceEEeecccCccccccccccccccc-ccc-eEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecc-cce
Confidence            9999999999999886544333222221111 111 111 22 334445555556689999999999999999988 336


Q ss_pred             ceeEEEEec
Q 035621          319 ISEMVIATG  327 (387)
Q Consensus       319 v~~~~~~~~  327 (387)
                      +.+.++-+.
T Consensus       338 i~c~~~~~~  346 (397)
T KOG4283|consen  338 INCAAYRPD  346 (397)
T ss_pred             eeEEeecCc
Confidence            666655443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7e-24  Score=166.45  Aligned_cols=284  Identities=13%  Similarity=0.135  Sum_probs=205.7

Q ss_pred             eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc--cccC---CCCCeeeEEeccCCCEEEEec-CC
Q 035621           31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL--HNIP---VPEPVAPLATTADGSYLFTGG-LS  104 (387)
Q Consensus        31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~-~d  104 (387)
                      +..+++|.+.|++++|+.++..++    +++.|+.|++|++.+....  +.+.   .-+..+.+.|.||-+-++... ..
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~la----t~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g  154 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLA----TISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG  154 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeE----EEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence            346789999999999999665554    5999999999999764321  1111   224678899999987665544 45


Q ss_pred             CcEEEEeCCC---Ccee---------EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccce
Q 035621          105 GNVYAISVPK---GDIL---------RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML  172 (387)
Q Consensus       105 g~i~i~d~~~---~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  172 (387)
                      ..+++|.+..   |...         ..-+.|.-.+..+-...++.++++++.|..|.+|++             .+..+
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~l-------------kGq~L  221 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDL-------------KGQLL  221 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEec-------------CCcee
Confidence            5899998732   2111         112346667777778888899999999999999999             46667


Q ss_pred             EeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC---CCc-----EEEEEe-cCCceeEEEeCCCCCeEEEEccC
Q 035621          173 QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL---NGT-----HLSTVT-FPCAIMGLALDPTETDFFAAGSD  243 (387)
Q Consensus       173 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~-----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d  243 (387)
                      ..+...+..-...+++|++  +++++++.---+++|.+-   .|.     ....+. |.+.|..++|+++...+++.+.|
T Consensus       222 ~~idtnq~~n~~aavSP~G--RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD  299 (420)
T KOG2096|consen  222 QSIDTNQSSNYDAAVSPDG--RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD  299 (420)
T ss_pred             eeeccccccccceeeCCCC--cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecC
Confidence            7777667777778889885  999999999999999863   221     222333 77899999999999999999999


Q ss_pred             CcEEEEecccccc--ccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCcee
Q 035621          244 GLIYKGLLKYQSR--QQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISE  321 (387)
Q Consensus       244 g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  321 (387)
                      |.+++||..-.-.  +.......-...+..-.+....+..+|.|+.|+.+. ...++++..++|+....++.-+.+.|++
T Consensus       300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~  378 (420)
T KOG2096|consen  300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISS  378 (420)
T ss_pred             CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceee
Confidence            9999999864211  000000000011122334445899999999888764 4579999999999999998888889999


Q ss_pred             EEEEecCCCceee
Q 035621          322 MVIATGIGGSRGC  334 (387)
Q Consensus       322 ~~~~~~~~~~~~~  334 (387)
                      +.|++.......|
T Consensus       379 is~~~~g~~~atc  391 (420)
T KOG2096|consen  379 ISYSSDGKYIATC  391 (420)
T ss_pred             EEecCCCcEEeee
Confidence            9998765544433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.93  E-value=4.4e-24  Score=183.23  Aligned_cols=274  Identities=14%  Similarity=0.164  Sum_probs=214.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|-|||..|+.+.. ..+.+||+..|..++++++|.+.|++++|+.++..    +++|+.|..|.+|+.. -+-+..+.
T Consensus        18 ~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkr----FASG~aDK~VI~W~~k-lEG~LkYS   91 (1081)
T KOG1538|consen   18 IAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKR----FASGSADKSVIIWTSK-LEGILKYS   91 (1081)
T ss_pred             eEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCce----eccCCCceeEEEeccc-ccceeeec
Confidence            689999998887754 57999999999999999999999999999996554    4559999999999853 34445677


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                      |.+.|.|+.|+|-...|++++-+ ..-+|........ ..+ ....+.+++|..||++++.|-.+|+|.+-+-..     
T Consensus        92 H~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-----  163 (1081)
T KOG1538|consen   92 HNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-----  163 (1081)
T ss_pred             cCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCC-----
Confidence            99999999999998999988753 3678876543322 121 245688999999999999999999998875411     


Q ss_pred             CCCCCCCccceEeeeccCCCeEEEEEeeCCC---CceEEEEeCCCcEEEEeCCCCcEEE-EEecCCceeEEEeCCCCCeE
Q 035621          162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSF---NSIIISCSMDCTCKFWRLLNGTHLS-TVTFPCAIMGLALDPTETDF  237 (387)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l  237 (387)
                           +....+..--+.+++|.+++|+|...   ...++...+..++.+|.+. |+.+. .-...-...|+.+.++|.++
T Consensus       164 -----Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~  237 (1081)
T KOG1538|consen  164 -----EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYI  237 (1081)
T ss_pred             -----CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEE
Confidence                 12223334445788999999998752   3578888888899988875 44333 33456678899999999999


Q ss_pred             EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621          238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  305 (387)
                      +.|+.|+.+.+|..+.         ..+.+. .....+|+.++..|++++++.|+.||+|..|++-..
T Consensus       238 LiGGsdk~L~~fTR~G---------vrLGTv-g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  238 LLGGSDKQLSLFTRDG---------VRLGTV-GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             EEccCCCceEEEeecC---------eEEeec-cccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence            9999999999986543         233332 235678999999999999999999999999997654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=3.9e-24  Score=177.29  Aligned_cols=256  Identities=14%  Similarity=0.190  Sum_probs=198.7

Q ss_pred             cccCCCcE-EEeeCCCCcEEEEeCCCCc---e--eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621            3 HHLPCNEV-ILTSSPEGPITAYNPSSGA---I--LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP   76 (387)
Q Consensus         3 ~~s~~~~~-l~~~~~dg~i~iwd~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~   76 (387)
                      +|+....+ +++.+.|..+++|.- .|+   .  +....+.  .-.|++...    ..-++++|+..+.|+|||++...+
T Consensus        41 ~w~~~n~lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~~gd--~~~Cv~~~s----~S~y~~sgG~~~~Vkiwdl~~kl~  113 (673)
T KOG4378|consen   41 NWQRRNFLVVASMAGDKVMRIKEK-DGKTPEVPRVRKLTGD--NAFCVACAS----QSLYEISGGQSGCVKIWDLRAKLI  113 (673)
T ss_pred             eccccceEEEeecCCceeEEEecc-cCCCCccceeeccccc--hHHHHhhhh----cceeeeccCcCceeeehhhHHHHH
Confidence            44444432 233456778889973 343   2  2222222  233444333    223556699999999999985555


Q ss_pred             ccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCC-CCCeEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 035621           77 LHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH-DKPVSCLKISPDGS-LLISGGDDGVIATVP  153 (387)
Q Consensus        77 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd  153 (387)
                      .+.++ |...|+++.++....+||+++..|.|.+..+.++.....|... ...|+-+.|+|..+ +|.+++.+|.|.+||
T Consensus       114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD  193 (673)
T KOG4378|consen  114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD  193 (673)
T ss_pred             hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence            55554 7789999999999999999999999999999998877777644 45567899999766 667889999999999


Q ss_pred             CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCC
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPT  233 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  233 (387)
                      +..           ..........|..+...|+|+|.. ..+|++.+.|..|.+||++.......+....+...++|.++
T Consensus       194 v~g-----------~sp~~~~~~~HsAP~~gicfspsn-e~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~  261 (673)
T KOG4378|consen  194 VQG-----------MSPIFHASEAHSAPCRGICFSPSN-EALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSEC  261 (673)
T ss_pred             ccC-----------CCcccchhhhccCCcCcceecCCc-cceEEEecccceEEEeecccccccceeeecCCcceeeecCC
Confidence            932           223344457899999999999985 68999999999999999998888888888899999999999


Q ss_pred             CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC
Q 035621          234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG  285 (387)
Q Consensus       234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  285 (387)
                      |.+|++|...|.|+.||++.        .+.++.....|...|++++|-|..
T Consensus       262 G~~L~aG~s~G~~i~YD~R~--------~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  262 GTYLCAGNSKGELIAYDMRS--------TKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ceEEEeecCCceEEEEeccc--------CCCCceEeeecccceeEEEeeecc
Confidence            99999999999999999998        455666667899999999998764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.7e-23  Score=170.01  Aligned_cols=283  Identities=17%  Similarity=0.178  Sum_probs=200.1

Q ss_pred             ccCCCcEEEeeCCCC-----cEEEEeCCCCceeEeccCC----CCCceeEEEcCc---cceeeeccccCCCCCeEEEEEc
Q 035621            4 HLPCNEVILTSSPEG-----PITAYNPSSGAILAHFSGS----RSPRRGLTFAGK---PFIAASHISPTTGSGSVHLYNL   71 (387)
Q Consensus         4 ~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~---~~~~~~~~~~~~~d~~v~vw~~   71 (387)
                      .-|+.++++.+-.+.     .|+||+-.....   +-.|    .....|++|...   .--.+++++.|+.|..|.|||+
T Consensus       133 V~psDnlIl~ar~eddvs~LEvYVyn~~e~nl---YvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDL  209 (463)
T KOG0270|consen  133 VKPSDNLILCARNEDDVSYLEVYVYNEEEENL---YVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDL  209 (463)
T ss_pred             eccCCcEEEEeeccCCceEEEEEEEcCCCcce---eEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEecc
Confidence            446666666664332     266676433221   1112    122456666431   2224557778999999999998


Q ss_pred             cCCCc---cccc-------------------CCCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCe
Q 035621           72 WSSTP---LHNI-------------------PVPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPV  128 (387)
Q Consensus        72 ~~~~~---~~~~-------------------~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v  128 (387)
                      .-...   ...+                   .|...|..++|+.. .+.||+|+.|.+|.+||+.++++..++..|.+.|
T Consensus       210 DI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~V  289 (463)
T KOG0270|consen  210 DIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKV  289 (463)
T ss_pred             ccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCce
Confidence            52211   0000                   14456778888774 4689999999999999999999999999999999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEE
Q 035621          129 SCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKF  207 (387)
Q Consensus       129 ~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~i  207 (387)
                      .++.|+| ....|++|+.|+++.+.|+|...            .....-.-.+.|-.++|.|.. ...++++..||+++-
T Consensus       290 q~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~------------~s~~~wk~~g~VEkv~w~~~s-e~~f~~~tddG~v~~  356 (463)
T KOG0270|consen  290 QTLEWHPYEPSVLLSGSYDGTVALKDCRDPS------------NSGKEWKFDGEVEKVAWDPHS-ENSFFVSTDDGTVYY  356 (463)
T ss_pred             eEEEecCCCceEEEeccccceEEeeeccCcc------------ccCceEEeccceEEEEecCCC-ceeEEEecCCceEEe
Confidence            9999999 56799999999999999996411            111111235678899999886 567888899999999


Q ss_pred             EeCCCC-cEEEEEe-cCCceeEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621          208 WRLLNG-THLSTVT-FPCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE  284 (387)
Q Consensus       208 wd~~~~-~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  284 (387)
                      +|+|+. +++.++. |..+|.++++++.- .++++++.|+.+++|++............       -.-+...|.++.|+
T Consensus       357 ~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~-------~~~~rl~c~~~~~~  429 (463)
T KOG0270|consen  357 FDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS-------FKLGRLHCFALDPD  429 (463)
T ss_pred             eecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc-------ccccceeecccCCC
Confidence            999975 8888887 88999999999865 56778889999999999764322111000       01123566677776


Q ss_pred             CC-EEEEEeCCCcEEEEECCCccEEE
Q 035621          285 GK-NLVSAAEDGSVYIWEIEKRQVVM  309 (387)
Q Consensus       285 ~~-~l~s~~~dg~i~iwd~~~~~~~~  309 (387)
                      -. +++.|+..+.++|||+.+...+.
T Consensus       430 ~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  430 VAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             cceEEEecCccceEEEeecccChhHH
Confidence            54 67788888899999998877654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.92  E-value=9.3e-24  Score=169.24  Aligned_cols=208  Identities=18%  Similarity=0.197  Sum_probs=163.6

Q ss_pred             CCCCeeeEEeccCC--CEEEEecCCCcEEEEeCCC----------------CceeEEccCCCCCeEEEEEcCC-CCEEEE
Q 035621           82 VPEPVAPLATTADG--SYLFTGGLSGNVYAISVPK----------------GDILRSFSAHDKPVSCLKISPD-GSLLIS  142 (387)
Q Consensus        82 ~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~----------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~  142 (387)
                      |.+.++.+.-++-+  .+.++-+..|.|+||++..                .+++.++.+|...=..++|||- ...|++
T Consensus       150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls  229 (440)
T KOG0302|consen  150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS  229 (440)
T ss_pred             cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence            44556666666644  4556667889999999832                2467788899988899999993 225888


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC---cEEEEE
Q 035621          143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG---THLSTV  219 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~  219 (387)
                      |..-+.|++|.....         .-..-...+.+|...|..++|+|.. ...|++||-||+|+|||++.+   .++.+-
T Consensus       230 GDc~~~I~lw~~~~g---------~W~vd~~Pf~gH~~SVEDLqWSptE-~~vfaScS~DgsIrIWDiRs~~~~~~~~~k  299 (440)
T KOG0302|consen  230 GDCVKGIHLWEPSTG---------SWKVDQRPFTGHTKSVEDLQWSPTE-DGVFASCSCDGSIRIWDIRSGPKKAAVSTK  299 (440)
T ss_pred             CccccceEeeeeccC---------ceeecCccccccccchhhhccCCcc-CceEEeeecCceEEEEEecCCCccceeEee
Confidence            888899999977321         0111223456799999999999987 589999999999999999988   455555


Q ss_pred             ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC-CCEEEEEeCCCcEE
Q 035621          220 TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE-GKNLVSAAEDGSVY  298 (387)
Q Consensus       220 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~  298 (387)
                      .|++.|+.+.|+....+|++|+.||.+.|||++.-.      ...++..+..|..+|+++.|+|. ...|++++.|.+|.
T Consensus       300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~------~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit  373 (440)
T KOG0302|consen  300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK------SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT  373 (440)
T ss_pred             ccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc------CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence            588999999999999999999999999999999743      23455556789999999999985 45788889999999


Q ss_pred             EEECCCc
Q 035621          299 IWEIEKR  305 (387)
Q Consensus       299 iwd~~~~  305 (387)
                      +||+...
T Consensus       374 iWDlsvE  380 (440)
T KOG0302|consen  374 IWDLSVE  380 (440)
T ss_pred             EEEeecc
Confidence            9998643

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=8.1e-23  Score=160.82  Aligned_cols=270  Identities=15%  Similarity=0.185  Sum_probs=197.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCC-------ce-----eEecc-CCCCCceeEEEcC---ccceeeeccccCCCCCe
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSG-------AI-----LAHFS-GSRSPRRGLTFAG---KPFIAASHISPTTGSGS   65 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~-----~~~~~-~~~~~v~~~~~~~---~~~~~~~~~~~~~~d~~   65 (387)
                      ..|||||..|++-+.|..+.+|++...       ..     ..+++ .....|...+|-+   ...-..+++++.+.+.-
T Consensus        55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P  134 (406)
T KOG2919|consen   55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP  134 (406)
T ss_pred             ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence            469999999999999999999998421       10     11111 1223466666653   11113445666899999


Q ss_pred             EEEEEccCCCcccccC---CCC---CeeeEEeccCCCEEEEecCCCcEEEEeC-CCCceeEEc--c-----CCCCCeEEE
Q 035621           66 VHLYNLWSSTPLHNIP---VPE---PVAPLATTADGSYLFTGGLSGNVYAISV-PKGDILRSF--S-----AHDKPVSCL  131 (387)
Q Consensus        66 v~vw~~~~~~~~~~~~---~~~---~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~--~-----~~~~~v~~~  131 (387)
                      |++||.-+|+....+.   |.+   ...+++|+|||..|++| ....|++||+ +.|+....+  .     +..+-+.++
T Consensus       135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~  213 (406)
T KOG2919|consen  135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCF  213 (406)
T ss_pred             eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeee
Confidence            9999999998877665   333   46789999999999987 5678999999 555432211  1     235678999


Q ss_pred             EEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CCcEEEEe
Q 035621          132 KISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DCTCKFWR  209 (387)
Q Consensus       132 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~i~iwd  209 (387)
                      +|+| +.+.++.++....+-||.-            ....++..+.+|.+.|+.+.|++++  +.|.+|+. |-.|..||
T Consensus       214 a~sP~~~~~~a~gsY~q~~giy~~------------~~~~pl~llggh~gGvThL~~~edG--n~lfsGaRk~dkIl~WD  279 (406)
T KOG2919|consen  214 AFSPMDSKTLAVGSYGQRVGIYND------------DGRRPLQLLGGHGGGVTHLQWCEDG--NKLFSGARKDDKILCWD  279 (406)
T ss_pred             eccCCCCcceeeecccceeeeEec------------CCCCceeeecccCCCeeeEEeccCc--CeecccccCCCeEEEEe
Confidence            9999 5568999999888888866            5667888888999999999999996  56776665 78899999


Q ss_pred             CCCC-cEEEEEe-cC---CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621          210 LLNG-THLSTVT-FP---CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE  284 (387)
Q Consensus       210 ~~~~-~~~~~~~-~~---~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  284 (387)
                      ++.. .++..+. +.   ..=.-....|++++|++|+.||.|++||++...        .....+..|...++.++++|-
T Consensus       280 iR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--------n~~sv~~~~sd~vNgvslnP~  351 (406)
T KOG2919|consen  280 IRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--------NEVSVTGNYSDTVNGVSLNPI  351 (406)
T ss_pred             ehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--------CcccccccccccccceecCcc
Confidence            9864 3444443 21   222235567899999999999999999998722        222233468889999999999


Q ss_pred             CCEEEEEeCC
Q 035621          285 GKNLVSAAED  294 (387)
Q Consensus       285 ~~~l~s~~~d  294 (387)
                      -.++++++..
T Consensus       352 mpilatssGq  361 (406)
T KOG2919|consen  352 MPILATSSGQ  361 (406)
T ss_pred             cceeeeccCc
Confidence            8888887654

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5.7e-23  Score=161.14  Aligned_cols=278  Identities=14%  Similarity=0.118  Sum_probs=197.9

Q ss_pred             ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE
Q 035621           41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR  119 (387)
Q Consensus        41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  119 (387)
                      ..|+.|++    .+.+++.|+.+|.|.+||+.+....+.+. |-.+|.+++|+++|+.|++++.|..|.+||+..|.+++
T Consensus        26 a~~~~Fs~----~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   26 AECCQFSR----WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK  101 (405)
T ss_pred             cceEEecc----CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence            68899999    44555569999999999999998777776 66899999999999999999999999999999999998


Q ss_pred             EccCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc------CCCeEEEEEeeCCC
Q 035621          120 SFSAHDKPVSCLKISPDGS-LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH------NDSVTAITCCIGSF  192 (387)
Q Consensus       120 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~  192 (387)
                      .+. ...+|....|+|..+ .+++.-.+..-.+-++..              +.+..-..      +..-.+..|.+.  
T Consensus       102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--------------~~h~~Lp~d~d~dln~sas~~~fdr~--  164 (405)
T KOG1273|consen  102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--------------PKHSVLPKDDDGDLNSSASHGVFDRR--  164 (405)
T ss_pred             EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC--------------CceeeccCCCccccccccccccccCC--
Confidence            886 578999999999443 444443444444555421              11111000      001111234444  


Q ss_pred             CceEEEEeCCCcEEEEeCCCCcEEEEEec--CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc---cccc-cceeE
Q 035621          193 NSIIISCSMDCTCKFWRLLNGTHLSTVTF--PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ---QMHK-GQELV  266 (387)
Q Consensus       193 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~-~~~~~  266 (387)
                      |+++++|...|.+.++|..+.+++..++.  ...|..+.++..|+.++.-+.|..|+.|+++.-...   .... ..++.
T Consensus       165 g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~q  244 (405)
T KOG1273|consen  165 GKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ  244 (405)
T ss_pred             CCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHH
Confidence            69999999999999999999999988873  368999999999999999999999999998742111   0000 00000


Q ss_pred             eecccccccEEEEEEecCCCEEEEEeC-CCcEEEEECCCccEEEEeecccCCCce-------eEEEEecCCCceeeEEEe
Q 035621          267 TLANRHDGVVVSVMMMNEGKNLVSAAE-DGSVYIWEIEKRQVVMVLKNELAGSIS-------EMVIATGIGGSRGCGVVK  338 (387)
Q Consensus       267 ~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~-------~~~~~~~~~~~~~~~~~~  338 (387)
                      ..  -....=.+++|+.+|.|++.++. -..++||.-..|.+++.+.+......-       ...+++-..+.+.+|...
T Consensus       245 Dv--VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~  322 (405)
T KOG1273|consen  245 DV--VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVV  322 (405)
T ss_pred             HH--HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEee
Confidence            00  11223457899999999987764 457999999999999999876422222       223444455556666554


Q ss_pred             cCC
Q 035621          339 TGK  341 (387)
Q Consensus       339 ~~~  341 (387)
                      .-.
T Consensus       323 ~~e  325 (405)
T KOG1273|consen  323 QVE  325 (405)
T ss_pred             ccc
Confidence            433

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.8e-24  Score=194.97  Aligned_cols=239  Identities=20%  Similarity=0.232  Sum_probs=196.2

Q ss_pred             ccccCCCcE----EEeeCCCCcEEEEeCCC---C---ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc
Q 035621            2 LHHLPCNEV----ILTSSPEGPITAYNPSS---G---AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL   71 (387)
Q Consensus         2 l~~s~~~~~----l~~~~~dg~i~iwd~~~---~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~   71 (387)
                      |+|.+.|..    ||.|..||.|.+||...   +   ..+.++..|.++|..+.|++.   ..+.+++|+.||.|.|||+
T Consensus        70 L~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~---q~nlLASGa~~geI~iWDl  146 (1049)
T KOG0307|consen   70 LAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF---QGNLLASGADDGEILIWDL  146 (1049)
T ss_pred             eeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc---CCceeeccCCCCcEEEecc
Confidence            567777655    89999999999999864   2   346677889999999999994   2335667999999999999


Q ss_pred             cCCCcccccC---CCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCceeEEccCCCC--CeEEEEEcCCCC-EEEEEe
Q 035621           72 WSSTPLHNIP---VPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGDILRSFSAHDK--PVSCLKISPDGS-LLISGG  144 (387)
Q Consensus        72 ~~~~~~~~~~---~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~-~l~~~~  144 (387)
                      ...+......   ..+.|.+++|+.. ...|++++.+|.+.|||++..+.+..+..+..  .+..++|+|+.. .+++++
T Consensus       147 nn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As  226 (1049)
T KOG0307|consen  147 NKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS  226 (1049)
T ss_pred             CCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeec
Confidence            8766555442   4578999999984 56788889999999999999888877765544  478899999764 666666


Q ss_pred             CCC---cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec
Q 035621          145 DDG---VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF  221 (387)
Q Consensus       145 ~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  221 (387)
                      .|.   .|.+||+|.           ...+++.+.+|...|.++.|++.. ..+|++++.|+.|.+|+.++++.+..+..
T Consensus       227 ~dd~~PviqlWDlR~-----------assP~k~~~~H~~GilslsWc~~D-~~lllSsgkD~~ii~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  227 GDDSAPVIQLWDLRF-----------ASSPLKILEGHQRGILSLSWCPQD-PRLLLSSGKDNRIICWNPNTGEVLGELPA  294 (1049)
T ss_pred             CCCCCceeEeecccc-----------cCCchhhhcccccceeeeccCCCC-chhhhcccCCCCeeEecCCCceEeeecCC
Confidence            554   599999964           456778889999999999999874 68999999999999999999999999984


Q ss_pred             -CCceeEEEeCCCCC-eEEEEccCCcEEEEeccccc
Q 035621          222 -PCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQS  255 (387)
Q Consensus       222 -~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~  255 (387)
                       ...+..+.|.|... .+++++-||.|.|+.+....
T Consensus       295 ~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  295 QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence             56799999999886 67777889999999998754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.9e-22  Score=156.68  Aligned_cols=214  Identities=12%  Similarity=0.087  Sum_probs=165.3

Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC----ceeEEccCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEeCC
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG----DILRSFSAHDKPVSCLKISP--DGSLLISGGDDGVIATVPIF  155 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~  155 (387)
                      |.+-|.++.|.+.|+.+|+|+.|++++|||.+..    .+....+.|.+.|..+.|.+  -|+.+++++.|+++.||.-.
T Consensus        12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~   91 (361)
T KOG2445|consen   12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQ   91 (361)
T ss_pred             CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeec
Confidence            5567999999999999999999999999997443    45667889999999999976  58999999999999999652


Q ss_pred             cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE------EEEEe--------c
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH------LSTVT--------F  221 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~--------~  221 (387)
                      .   ..............++....+.|+.+.|.|..-|-.|++++.||.+|||+....-.      ...+.        +
T Consensus        92 ~---~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   92 E---KSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             c---cccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            1   11111112445566777788999999999998889999999999999998765332      22232        3


Q ss_pred             CCceeEEEeCCCC---CeEEEEccC-----CcEEEEeccccccccccccceeEeecccccccEEEEEEecCC----CEEE
Q 035621          222 PCAIMGLALDPTE---TDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG----KNLV  289 (387)
Q Consensus       222 ~~~v~~~~~~~~~---~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~  289 (387)
                      ..+..|+.|+|..   .+|++|+.+     +.++||......+.     ......+.+|..+|+.++|.|+-    .+||
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-----w~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-----WLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-----eeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence            4567899999753   678888765     57888887764422     12223345899999999999963    4799


Q ss_pred             EEeCCCcEEEEECCC
Q 035621          290 SAAEDGSVYIWEIEK  304 (387)
Q Consensus       290 s~~~dg~i~iwd~~~  304 (387)
                      +++.|| |+||+++.
T Consensus       244 vA~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKV  257 (361)
T ss_pred             EeecCc-EEEEEEee
Confidence            999999 99999984

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.9e-23  Score=170.60  Aligned_cols=238  Identities=17%  Similarity=0.229  Sum_probs=197.7

Q ss_pred             ccccCCCc-EEEeeCCCCcEEEEeCCCCceeE--eccCCCC-CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621            2 LHHLPCNE-VILTSSPEGPITAYNPSSGAILA--HFSGSRS-PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL   77 (387)
Q Consensus         2 l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~   77 (387)
                      .+|.|+|. .+++++.....+.||+.+.+...  .+.++.. .+.....+++..    .++..+..|.|.+....+++.+
T Consensus       263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~----fia~~G~~G~I~lLhakT~eli  338 (514)
T KOG2055|consen  263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSN----FIAIAGNNGHIHLLHAKTKELI  338 (514)
T ss_pred             eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCC----eEEEcccCceEEeehhhhhhhh
Confidence            46899998 89999999999999999887533  3344443 367778888544    4555899999999999999999


Q ss_pred             cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCe--EEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621           78 HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPV--SCLKISPDGSLLISGGDDGVIATVPIF  155 (387)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~iwd~~  155 (387)
                      ..++.++.|..++|+.+++.|++.+.+|.|.+||++...+++.+.. .+.|  ++++.++++.+|++|+..|.|.|||..
T Consensus       339 ~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  339 TSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             heeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence            9999999999999999999999999999999999999999988864 3333  567778999999999999999999974


Q ss_pred             cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC--CCcEEEEeCCCCcEEEEEecC----CceeEEE
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM--DCTCKFWRLLNGTHLSTVTFP----CAIMGLA  229 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~----~~v~~~~  229 (387)
                      .....      ...+++..+..-...|+++.|+++.  ++|+.+|.  +..+++-.+.+......++..    +.++|++
T Consensus       418 s~~~s------~~PkPik~~dNLtt~Itsl~Fn~d~--qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~a  489 (514)
T KOG2055|consen  418 SCFAS------TNPKPIKTVDNLTTAITSLQFNHDA--QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMA  489 (514)
T ss_pred             hhhcc------CCCCchhhhhhhheeeeeeeeCcch--hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEE
Confidence            43322      4566777777788899999999986  88887775  678999988887777666632    4699999


Q ss_pred             eCCCCCeEEEEccCCcEEEEecc
Q 035621          230 LDPTETDFFAAGSDGLIYKGLLK  252 (387)
Q Consensus       230 ~~~~~~~l~~~~~dg~i~i~d~~  252 (387)
                      |+|.+.++++|..+|.+.+|.+.
T Consensus       490 FSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  490 FSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ecCCCceEEeecCCCceeeEeec
Confidence            99999999999999999999874

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.91  E-value=4.3e-23  Score=162.63  Aligned_cols=285  Identities=16%  Similarity=0.228  Sum_probs=204.4

Q ss_pred             cEEEeeCCCCcEEEEeCCCCc---eeEecc--CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-C
Q 035621            9 EVILTSSPEGPITAYNPSSGA---ILAHFS--GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-V   82 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~---~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~   82 (387)
                      ..+|+.+. +.+.+|+....-   .++.+.  .|......++|.-+..-....++.++.-|.|+|.|+.+++....+. |
T Consensus        56 ~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~gh  134 (385)
T KOG1034|consen   56 QVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGH  134 (385)
T ss_pred             ceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceecc
Confidence            45677665 578888875332   333332  3566677788874322222344558899999999999998887776 7


Q ss_pred             CCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCceeEEc---cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC--c
Q 035621           83 PEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGDILRSF---SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF--Q  156 (387)
Q Consensus        83 ~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~  156 (387)
                      ...|+.+.+.|+ .+++++++.|..|++|++++..++..+   .+|...|.++.|++++.++++++.|.+|++|++.  +
T Consensus       135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~  214 (385)
T KOG1034|consen  135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE  214 (385)
T ss_pred             CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence            789999999996 478999999999999999999998887   4799999999999999999999999999999996  2


Q ss_pred             ccccCCCC----CCCCc---------cce-EeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-Cc-------
Q 035621          157 LVDEHTDD----KNPDD---------LML-QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN-GT-------  214 (387)
Q Consensus       157 ~~~~~~~~----~~~~~---------~~~-~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~-------  214 (387)
                      ........    .+.+.         .+. .+..-|...|.|+.|.    ++++++-+-++.|..|.... .+       
T Consensus       215 f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~----gd~ilSkscenaI~~w~pgkl~e~~~~vkp  290 (385)
T KOG1034|consen  215 FKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF----GDFILSKSCENAIVCWKPGKLEESIHNVKP  290 (385)
T ss_pred             HhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH----hhheeecccCceEEEEecchhhhhhhccCC
Confidence            21110000    00010         111 1234577788888774    47899999999999998721 11       


Q ss_pred             ------EEEEEecC-Ccee--EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC
Q 035621          215 ------HLSTVTFP-CAIM--GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG  285 (387)
Q Consensus       215 ------~~~~~~~~-~~v~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  285 (387)
                            .+..+..+ ..+.  ..+|.|-+++|+.|...|.+++||++..+....   ..+.  .......|...+|+.||
T Consensus       291 ~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~---ttl~--~s~~~~tVRQ~sfS~dg  365 (385)
T KOG1034|consen  291 PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC---TTLT--HSKSGSTVRQTSFSRDG  365 (385)
T ss_pred             CccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC---ceEE--eccccceeeeeeecccC
Confidence                  12233322 2343  456677889999999999999999998543211   1111  11234579999999999


Q ss_pred             CEEEEEeCCCcEEEEECC
Q 035621          286 KNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       286 ~~l~s~~~dg~i~iwd~~  303 (387)
                      ..|+..+.|++|.-||.-
T Consensus       366 s~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  366 SILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cEEEEEeCCCcEEEEEee
Confidence            999999999999999854

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.91  E-value=5.7e-23  Score=175.31  Aligned_cols=263  Identities=17%  Similarity=0.203  Sum_probs=187.2

Q ss_pred             ccccCCCCCeEEEEEccCCCc-------ccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE--ccCCCC
Q 035621           56 HISPTTGSGSVHLYNLWSSTP-------LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS--FSAHDK  126 (387)
Q Consensus        56 ~~~~~~~d~~v~vw~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~  126 (387)
                      .|+.+..||.|.++|.....-       ..-+-|...|..+.|-|....|++++.|.++++||+++.+++..  +.+|.+
T Consensus        66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~  145 (720)
T KOG0321|consen   66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG  145 (720)
T ss_pred             eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc
Confidence            344588999999999865422       12223778999999999777899999999999999999988776  789999


Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccc------------cCC---CCCCCCccceEeeeccCCCeEE---EEE
Q 035621          127 PVSCLKISP-DGSLLISGGDDGVIATVPIFQLVD------------EHT---DDKNPDDLMLQKFVAHNDSVTA---ITC  187 (387)
Q Consensus       127 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~i~~---~~~  187 (387)
                      .|.+++|.| +...|++|+.||.|.|||++-...            ...   ....+..+.+....++...|.+   +.+
T Consensus       146 SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~  225 (720)
T KOG0321|consen  146 SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL  225 (720)
T ss_pred             ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE
Confidence            999999999 456899999999999999964320            000   1111222333444555555555   444


Q ss_pred             eeCCCCceEEEEeC-CCcEEEEeCCCCcEEEEEe---------c---CCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621          188 CIGSFNSIIISCSM-DCTCKFWRLLNGTHLSTVT---------F---PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       188 ~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~---------~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  254 (387)
                      ..+  ...|++++. |+.|+|||+++........         +   ...+.++.....|.+|++.+.|+.|++|++...
T Consensus       226 fkD--e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~  303 (720)
T KOG0321|consen  226 FKD--ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL  303 (720)
T ss_pred             Eec--cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence            444  378998888 9999999999765443321         1   235788888889999999999999999999874


Q ss_pred             ccccccccceeEeeccccccc--EEEEEEecCCCEEEEEeCCCcEEEEECCCccEEE-EeecccCCCceeEEEEecC
Q 035621          255 SRQQMHKGQELVTLANRHDGV--VVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVM-VLKNELAGSISEMVIATGI  328 (387)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~  328 (387)
                      ...       +...+.++...  -..-..+|++.++++|+.|...++|.+.+.+.-- .+.+| ...|+.+.+.+..
T Consensus       304 s~s-------P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Gh-t~eVt~V~w~pS~  372 (720)
T KOG0321|consen  304 SIS-------PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGH-TREVTTVRWLPSA  372 (720)
T ss_pred             CcC-------chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCc-ceEEEEEeecccc
Confidence            321       11112222211  1122468999999999999999999999876543 44454 4578888665543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.91  E-value=1.5e-22  Score=159.37  Aligned_cols=269  Identities=16%  Similarity=0.186  Sum_probs=195.1

Q ss_pred             ceeEEEcCccceeeeccccCCCCCeEEEEEccCC-------Cc-------ccccCCCCCeeeEEec-------cCCCEEE
Q 035621           41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-------TP-------LHNIPVPEPVAPLATT-------ADGSYLF   99 (387)
Q Consensus        41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-------~~-------~~~~~~~~~v~~~~~~-------~~~~~l~   99 (387)
                      ...+.|+|+    .+.+.+-+.|..+.+|++...       ..       ...+...+.|...+|-       |+..+++
T Consensus        52 ~kgckWSPD----GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a  127 (406)
T KOG2919|consen   52 LKGCKWSPD----GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA  127 (406)
T ss_pred             hccceeCCC----CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence            567889994    455556889999999998421       11       1122234567777775       6778999


Q ss_pred             EecCCCcEEEEeCCCCceeEEccC--CCC---CeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621          100 TGGLSGNVYAISVPKGDILRSFSA--HDK---PVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK  174 (387)
Q Consensus       100 ~~~~dg~i~i~d~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  174 (387)
                      +.+.+.-|++||.-+|+....+.+  |..   .-.+++|+|||.+|++|. .+.|++||+.+.-....    ......+.
T Consensus       128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~----vy~t~~~~  202 (406)
T KOG2919|consen  128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCP----VYTTVTKG  202 (406)
T ss_pred             eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCc----chhhhhcc
Confidence            999999999999999998877753  332   346899999999998765 57999999943211100    00011111


Q ss_pred             eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEcc-CCcEEEEecc
Q 035621          175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGS-DGLIYKGLLK  252 (387)
Q Consensus       175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~  252 (387)
                      -.+..+-|.+++|+|.. ...++.++...++-||.-..+.++..+. +.+.|+.++|.++|+.|++|.. +..|..||++
T Consensus       203 k~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  203 KFGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             cccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence            23446778899999985 4689999999999999988888887776 7899999999999999999987 8899999999


Q ss_pred             ccccccccccceeEeecccccc-cEEEEE--EecCCCEEEEEeCCCcEEEEECCC-ccEEEEeecccCCCceeEEEEecC
Q 035621          253 YQSRQQMHKGQELVTLANRHDG-VVVSVM--MMNEGKNLVSAAEDGSVYIWEIEK-RQVVMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~--~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~  328 (387)
                      ...        .++-.+..|.. .=..|.  ..|++++|++|+.||.|++||++. +..+..+..+ ...++.+.+.+.+
T Consensus       282 ~~~--------~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~-sd~vNgvslnP~m  352 (406)
T KOG2919|consen  282 YSR--------DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY-SDTVNGVSLNPIM  352 (406)
T ss_pred             hcc--------chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc-cccccceecCccc
Confidence            732        22222233443 223344  458999999999999999999998 7767666655 3477777766653

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=6.1e-22  Score=170.59  Aligned_cols=289  Identities=18%  Similarity=0.161  Sum_probs=201.6

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc--cc
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH--NI   80 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~--~~   80 (387)
                      .|.|.+ .+|.|. ...|.+||..+......+.+|..+|+|+.|-|...+.+ .+++|+.|+.|.+|.++......  .+
T Consensus        21 sw~~~~-~vafGa-~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a-~~vsG~sD~~v~lW~l~~~~~~~i~~~   97 (764)
T KOG1063|consen   21 SWGPGG-LVAFGA-GPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVA-EMVSGDSDGRVILWKLRDEYLIKIYTI   97 (764)
T ss_pred             cccccc-eEEecC-CceEEEeCcccceeEEeccCCccceEEEEEcccccccc-eEEEccCCCcEEEEEEeehheEEEEee
Confidence            453433 455554 47899999988878889999999999999998655433 78889999999999998443332  33


Q ss_pred             CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC----------------------------------------------
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPK----------------------------------------------  114 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------------------------------------------  114 (387)
                      ++ ....+++++..-....+...|+.+.+||.+.                                              
T Consensus        98 ~g-~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~  176 (764)
T KOG1063|consen   98 QG-HCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSS  176 (764)
T ss_pred             cC-cceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEecc
Confidence            33 2333344433322222223455555555421                                              


Q ss_pred             --C--ceeEEccCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEeCCcccccCCCC---------CCCCccceEe----
Q 035621          115 --G--DILRSFSAHDKPVSCLKISPDG---SLLISGGDDGVIATVPIFQLVDEHTDD---------KNPDDLMLQK----  174 (387)
Q Consensus       115 --~--~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~----  174 (387)
                        .  +.+..+.+|...|.+++|...+   -+|++++.|..|+||.+.-..+.....         ..+.......    
T Consensus       177 ~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~  256 (764)
T KOG1063|consen  177 SADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYR  256 (764)
T ss_pred             CCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEE
Confidence              1  2345667899999999998744   389999999999999984322111000         0011111111    


Q ss_pred             ------eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE--EEEe------cCCceeEEEeCCCCCeEEEE
Q 035621          175 ------FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL--STVT------FPCAIMGLALDPTETDFFAA  240 (387)
Q Consensus       175 ------~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~------~~~~v~~~~~~~~~~~l~~~  240 (387)
                            +.+|.+.|.++.|+|..  ..|++++.|.++.+|...+..-+  ....      .........|+|+++.+++-
T Consensus       257 is~eall~GHeDWV~sv~W~p~~--~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~  334 (764)
T KOG1063|consen  257 ISFEALLMGHEDWVYSVWWHPEG--LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAH  334 (764)
T ss_pred             EehhhhhcCcccceEEEEEccch--hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEe
Confidence                  24899999999999985  78999999999999987654322  2222      12358899999999999999


Q ss_pred             ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      +..|..++|......      .........+|...|..++|+|.|.+|++.+.|.+-|+|-.-
T Consensus       335 g~~Gg~hlWkt~d~~------~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w  391 (764)
T KOG1063|consen  335 GRTGGFHLWKTKDKT------FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW  391 (764)
T ss_pred             cccCcEEEEeccCcc------ceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence            999999999832211      123333456999999999999999999999999999998755

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.91  E-value=1.3e-23  Score=165.55  Aligned_cols=240  Identities=13%  Similarity=0.173  Sum_probs=192.3

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC----CC
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP----VP   83 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~----~~   83 (387)
                      ..++|+|+.-|.|+|.|+.+++....+.+|...|+.+.+.|..   ..++++++.|..|++|++++..++..+.    |.
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~---~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHr  181 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR---PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHR  181 (385)
T ss_pred             CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC---CcEEEEecCCceEEEEeccCCeEEEEeccccccc
Confidence            3578889999999999999999999999999999999999953   2344559999999999999999998876    77


Q ss_pred             CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE----------------------------EccCCCCCeEEEEEcC
Q 035621           84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR----------------------------SFSAHDKPVSCLKISP  135 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------------------~~~~~~~~v~~~~~~~  135 (387)
                      ..|.++.|+++|.++++++.|.+|++|++...+...                            +-.-|...|-|+.|- 
T Consensus       182 deVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-  260 (385)
T KOG1034|consen  182 DEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-  260 (385)
T ss_pred             CcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH-
Confidence            899999999999999999999999999997332100                            112356666677764 


Q ss_pred             CCCEEEEEeCCCcEEEEeCCcccccC--CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC
Q 035621          136 DGSLLISGGDDGVIATVPIFQLVDEH--TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG  213 (387)
Q Consensus       136 ~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  213 (387)
                       |+++++-+-++.|..|...+..+..  ..+.......+.++......|.-+.|..+.-+++|+.|...|.+.+||++..
T Consensus       261 -gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~  339 (385)
T KOG1034|consen  261 -GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN  339 (385)
T ss_pred             -hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence             5789999999999999875443321  1122233445667777778899999888877789999999999999999987


Q ss_pred             cEE--EEEe---cCCceeEEEeCCCCCeEEEEccCCcEEEEecc
Q 035621          214 THL--STVT---FPCAIMGLALDPTETDFFAAGSDGLIYKGLLK  252 (387)
Q Consensus       214 ~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  252 (387)
                      .+.  .++.   ....|...+|+.|+..|+..+.|+.|.-||..
T Consensus       340 ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  340 EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            653  2232   35679999999999999999999999999864

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.6e-23  Score=190.04  Aligned_cols=250  Identities=20%  Similarity=0.237  Sum_probs=190.8

Q ss_pred             CCCeEEEEEcc--CC----CcccccCCCCCeeeEEeccCCCE----EEEecCCCcEEEEeCCC---C---ceeEEccCCC
Q 035621           62 GSGSVHLYNLW--SS----TPLHNIPVPEPVAPLATTADGSY----LFTGGLSGNVYAISVPK---G---DILRSFSAHD  125 (387)
Q Consensus        62 ~d~~v~vw~~~--~~----~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~i~d~~~---~---~~~~~~~~~~  125 (387)
                      .+.++.+|.+.  +.    +....+......+.++|.+.|..    |+.|..||.|.+||...   +   ..+.+...|.
T Consensus        37 t~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~  116 (1049)
T KOG0307|consen   37 TSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT  116 (1049)
T ss_pred             cccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccC
Confidence            34455555443  22    34455556678999999997765    88888999999999854   2   3456677899


Q ss_pred             CCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCc
Q 035621          126 KPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT  204 (387)
Q Consensus       126 ~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~  204 (387)
                      +.|..+.|++.. ++|++|+.||.|.|||+.+.......         . -....+.|.+++|...- ..+|++++.+|+
T Consensus       117 G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~---------~-~~~~~~eI~~lsWNrkv-qhILAS~s~sg~  185 (1049)
T KOG0307|consen  117 GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP---------G-SQAPPSEIKCLSWNRKV-SHILASGSPSGR  185 (1049)
T ss_pred             CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC---------C-CCCCcccceEeccchhh-hHHhhccCCCCC
Confidence            999999999955 59999999999999999653222110         0 22345789999997654 578999999999


Q ss_pred             EEEEeCCCCcEEEEEecC---CceeEEEeCCCC-CeEEEEccC---CcEEEEeccccccccccccceeEeecccccccEE
Q 035621          205 CKFWRLLNGTHLSTVTFP---CAIMGLALDPTE-TDFFAAGSD---GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV  277 (387)
Q Consensus       205 i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~-~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  277 (387)
                      +.|||++..+++..+...   ..+..++|+|+. ..+++++.|   -.|.+||++.        .......+.+|...|.
T Consensus       186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~--------assP~k~~~~H~~Gil  257 (1049)
T KOG0307|consen  186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF--------ASSPLKILEGHQRGIL  257 (1049)
T ss_pred             ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc--------cCCchhhhccccccee
Confidence            999999999888777633   348899999987 456666553   4699999987        3344445568999999


Q ss_pred             EEEEecCC-CEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCc
Q 035621          278 SVMMMNEG-KNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGS  331 (387)
Q Consensus       278 ~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  331 (387)
                      ++.|++.+ ++|++++.|+.|.+|+.++++.+..+... ..-+..+-|++..++-
T Consensus       258 slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~-~nW~fdv~w~pr~P~~  311 (1049)
T KOG0307|consen  258 SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ-GNWCFDVQWCPRNPSV  311 (1049)
T ss_pred             eeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC-CcceeeeeecCCCcch
Confidence            99999866 89999999999999999999999999874 3367777777666543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.7e-20  Score=142.23  Aligned_cols=262  Identities=13%  Similarity=0.161  Sum_probs=189.1

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCC----------CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSS----------GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW   72 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~   72 (387)
                      +++|.+++|++|+.+|.|.+..+++          ...+...++|.++++.++|..+..+       .+.||.|+-|...
T Consensus        17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Ll-------s~gdG~V~gw~W~   89 (325)
T KOG0649|consen   17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLL-------SGGDGLVYGWEWN   89 (325)
T ss_pred             hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhhee-------eccCceEEEeeeh
Confidence            6899999999999999999998753          2335556899999999999964433       3457999999875


Q ss_pred             CCCc------ccccCC--------CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC
Q 035621           73 SSTP------LHNIPV--------PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS  138 (387)
Q Consensus        73 ~~~~------~~~~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  138 (387)
                      ....      +.....        --.|+++-..|..+.++.++.|+.++-||+++|+..+.+++|+..|.++.--....
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~  169 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG  169 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence            4322      111111        12588999999877777777999999999999999999999999999999855556


Q ss_pred             EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee---------ccC-CCeEEEEEeeCCCCceEEEEeCCCcEEEE
Q 035621          139 LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV---------AHN-DSVTAITCCIGSFNSIIISCSMDCTCKFW  208 (387)
Q Consensus       139 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~i~~~~~~~~~~~~~l~s~~~d~~i~iw  208 (387)
                      .+++|++||++++||++.            .+.+..+.         .|. ..|.+++.+    ..++++|+ ...+.+|
T Consensus       170 qilsG~EDGtvRvWd~kt------------~k~v~~ie~yk~~~~lRp~~g~wigala~~----edWlvCGg-Gp~lslw  232 (325)
T KOG0649|consen  170 QILSGAEDGTVRVWDTKT------------QKHVSMIEPYKNPNLLRPDWGKWIGALAVN----EDWLVCGG-GPKLSLW  232 (325)
T ss_pred             ceeecCCCccEEEEeccc------------cceeEEeccccChhhcCcccCceeEEEecc----CceEEecC-CCceeEE
Confidence            799999999999999943            33333332         222 346666643    25666654 5679999


Q ss_pred             eCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CE
Q 035621          209 RLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KN  287 (387)
Q Consensus       209 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~  287 (387)
                      .++..++...|..+..+..+.|..  +.+++++..+.+.-|.+..          .+...........++..|+..- ++
T Consensus       233 hLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G----------vl~a~ip~~s~~c~s~s~~~~p~k~  300 (325)
T KOG0649|consen  233 HLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNHVQSYTLNG----------VLQANIPVESTACYSASWQTSPIKF  300 (325)
T ss_pred             eccCCCceEEEecccceeEeeeec--ceEEEeccccceeeeeecc----------EEEEeccCCccceeeecccCCceEE
Confidence            999999999999999999999964  4788888888888887764          1111111222234444444222 34


Q ss_pred             EEEEeCCCcEEEE
Q 035621          288 LVSAAEDGSVYIW  300 (387)
Q Consensus       288 l~s~~~dg~i~iw  300 (387)
                      |-.++..+.+.|+
T Consensus       301 ~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  301 ISIAGFSNKLHIL  313 (325)
T ss_pred             EEecccceeeeee
Confidence            5555666666665

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.90  E-value=6.6e-20  Score=147.08  Aligned_cols=291  Identities=12%  Similarity=0.163  Sum_probs=209.8

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      +.|+.+...|..|+.|| -++|+................|-.+-|+..-....    .......+++.+...+..+..+.
T Consensus        11 ~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV----~~~qpr~Lkv~~~Kk~~~ICe~~   85 (391)
T KOG2110|consen   11 IGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIV----SIKQPRKLKVVHFKKKTTICEIF   85 (391)
T ss_pred             eeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEE----ecCCCceEEEEEcccCceEEEEe
Confidence            35778888999999987 67888765544332222333466677776432222    23344679999999999999999


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC---CCCCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCc
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA---HDKPVSCLKISPDGSLLISGG--DDGVIATVPIFQ  156 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~  156 (387)
                      .+.+|.++.++.+  .|+++-. ..|+|||+++.++++++..   +...+.++.+++.+.+++.-+  ..|.|.+||+  
T Consensus        86 fpt~IL~VrmNr~--RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~--  160 (391)
T KOG2110|consen   86 FPTSILAVRMNRK--RLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT--  160 (391)
T ss_pred             cCCceEEEEEccc--eEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc--
Confidence            9999999999764  5666544 4499999999999988763   445566777777777888654  4689999999  


Q ss_pred             ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCc-EEEEeCCCCcEEEEEe---cCCceeEEEeCC
Q 035621          157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT-CKFWRLLNGTHLSTVT---FPCAIMGLALDP  232 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~---~~~~v~~~~~~~  232 (387)
                                .+-.++..+..|.+++.+++|++++  .+|+|+|..|+ |||+.+.+|+.+.+|+   ....|.+++|+|
T Consensus       161 ----------~nl~~v~~I~aH~~~lAalafs~~G--~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~  228 (391)
T KOG2110|consen  161 ----------INLQPVNTINAHKGPLAALAFSPDG--TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP  228 (391)
T ss_pred             ----------ccceeeeEEEecCCceeEEEECCCC--CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC
Confidence                      5677888899999999999999985  99999999997 6999999999999997   356799999999


Q ss_pred             CCCeEEEEccCCcEEEEeccccccccccc----------------c---cee-------Eee--cc-cccccEEEEEEe-
Q 035621          233 TETDFFAAGSDGLIYKGLLKYQSRQQMHK----------------G---QEL-------VTL--AN-RHDGVVVSVMMM-  282 (387)
Q Consensus       233 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------~---~~~-------~~~--~~-~~~~~v~~~~~s-  282 (387)
                      ++.+|++.++.++|++|.+..........                .   ..+       ..+  .. ...+.-..+.+. 
T Consensus       229 ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~  308 (391)
T KOG2110|consen  229 DSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSS  308 (391)
T ss_pred             CCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeec
Confidence            99999999999999999987543111100                0   000       000  00 011111223333 


Q ss_pred             -cCCCEEEEEeCCCcEEEEECCC--ccEEEEeecc
Q 035621          283 -NEGKNLVSAAEDGSVYIWEIEK--RQVVMVLKNE  314 (387)
Q Consensus       283 -~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~  314 (387)
                       +...++..++.||.++.|.+.-  |.....++.|
T Consensus       309 ~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h  343 (391)
T KOG2110|consen  309 IQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRH  343 (391)
T ss_pred             cCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEee
Confidence             4677899999999999998754  4444455433

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=2.5e-22  Score=170.23  Aligned_cols=242  Identities=12%  Similarity=0.143  Sum_probs=188.7

Q ss_pred             EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCC--EEEEecCCCcEEE
Q 035621           32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGS--YLFTGGLSGNVYA  109 (387)
Q Consensus        32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i  109 (387)
                      ..+.+|++.|.++...|.    +.++++|+.||+|++|.+.++.++..+...+.|.|++|+|.+.  .||++- ...+.+
T Consensus       394 lvyrGHtg~Vr~iSvdp~----G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~-~~~~~i  468 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPS----GEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAV-GECVLI  468 (733)
T ss_pred             eeEeccCCeEEEEEecCC----cceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEe-cCceEE
Confidence            456899999999999994    4455569999999999999999999999999999999999765  344443 333444


Q ss_pred             EeCCCCc-------------------------------------eeEEccCCCCCeEEEEEcCCCCEEEEEeCC---CcE
Q 035621          110 ISVPKGD-------------------------------------ILRSFSAHDKPVSCLKISPDGSLLISGGDD---GVI  149 (387)
Q Consensus       110 ~d~~~~~-------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i  149 (387)
                      .+..-|.                                     -++..-.|...|+.+.|+..|.||++...+   ..|
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence            4431110                                     012223477889999999999999998764   468


Q ss_pred             EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEE
Q 035621          150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGL  228 (387)
Q Consensus       150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~  228 (387)
                      .|.++.            .......|....+.+.++.|+|..  .+|+.++. ..|+|||+.....++.+. ....|..+
T Consensus       549 liHQLS------------K~~sQ~PF~kskG~vq~v~FHPs~--p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~m  613 (733)
T KOG0650|consen  549 LIHQLS------------KRKSQSPFRKSKGLVQRVKFHPSK--PYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSM  613 (733)
T ss_pred             EEEecc------------cccccCchhhcCCceeEEEecCCC--ceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeee
Confidence            888883            333334455566789999999986  66666654 679999998877666654 44578899


Q ss_pred             EeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          229 ALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       229 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      +.+|.|..|++|+.|+.+..+|+...        ..+...+..|...+++++|++.-.+|++|+.||++.||.
T Consensus       614 sihp~GDnli~gs~d~k~~WfDldls--------skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  614 SIHPNGDNLILGSYDKKMCWFDLDLS--------SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             eecCCCCeEEEecCCCeeEEEEcccC--------cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            99999999999999999999999873        344444567999999999999999999999999999986

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=1.9e-21  Score=166.27  Aligned_cols=193  Identities=17%  Similarity=0.191  Sum_probs=141.7

Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcE
Q 035621          127 PVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC  205 (387)
Q Consensus       127 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i  205 (387)
                      .|+.++|+| |...|++++.||.|++|.+...-.     ......+-..+..|...|+++.|+|-. .+.|++++.|-+|
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl-----~e~~~tPe~~lt~h~eKI~slRfHPLA-advLa~asyd~Ti  702 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGL-----PENEMTPEKILTIHGEKITSLRFHPLA-ADVLAVASYDSTI  702 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCC-----CcccCCcceeeecccceEEEEEecchh-hhHhhhhhcccee
Confidence            367788888 677899999999999999843211     113455667788999999999999986 5899999999999


Q ss_pred             EEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621          206 KFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE  284 (387)
Q Consensus       206 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  284 (387)
                      ++||+.+++....+. |...|..++|+|+|+.+++.+.||.|++|..+..+.... ++...      -...--.+.|.-|
T Consensus       703 ~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~-Eg~gp------vgtRgARi~wacd  775 (1012)
T KOG1445|consen  703 ELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY-EGKGP------VGTRGARILWACD  775 (1012)
T ss_pred             eeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc-cCCCC------ccCcceeEEEEec
Confidence            999999998777776 889999999999999999999999999999887432111 11111      1122345677779


Q ss_pred             CCEEEEEeCC----CcEEEEECCCc--cEEEEeecc--------cCCCceeEEEEecCCCce
Q 035621          285 GKNLVSAAED----GSVYIWEIEKR--QVVMVLKNE--------LAGSISEMVIATGIGGSR  332 (387)
Q Consensus       285 ~~~l~s~~~d----g~i~iwd~~~~--~~~~~~~~~--------~~~~v~~~~~~~~~~~~~  332 (387)
                      |+++++.+.|    ..|.+||.++-  ..+.+..-.        +-..-+++.|.+|-+|..
T Consensus       776 gr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~  837 (1012)
T KOG1445|consen  776 GRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRF  837 (1012)
T ss_pred             CcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCce
Confidence            9999887766    46889987663  333332211        112345677877777764

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.89  E-value=1.5e-21  Score=158.14  Aligned_cols=255  Identities=16%  Similarity=0.210  Sum_probs=188.7

Q ss_pred             CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc---------cc-CCCCCeeeEEeccCCCEEEEecCCCc
Q 035621           37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH---------NI-PVPEPVAPLATTADGSYLFTGGLSGN  106 (387)
Q Consensus        37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~---------~~-~~~~~v~~~~~~~~~~~l~~~~~dg~  106 (387)
                      ...++..+.|.++   ..+.++|++.|..|++|.++.+..-.         .+ .|...|+++.|+|+|..|++|+.+|.
T Consensus        12 ~~~pv~s~dfq~n---~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~   88 (434)
T KOG1009|consen   12 DHEPVYSVDFQKN---SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGE   88 (434)
T ss_pred             CCCceEEEEeccC---cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCce
Confidence            3456888889875   23377889999999999987654433         11 27789999999999999999999999


Q ss_pred             EEEEeCC--------C--------CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCcc
Q 035621          107 VYAISVP--------K--------GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDL  170 (387)
Q Consensus       107 i~i~d~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  170 (387)
                      +.+|...        +        ....+.+.+|...|..++|+|+++++++++.|..+++||+            ..+.
T Consensus        89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv------------~~G~  156 (434)
T KOG1009|consen   89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV------------HAGQ  156 (434)
T ss_pred             EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe------------ccce
Confidence            9999865        2        1123456789999999999999999999999999999999            6788


Q ss_pred             ceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe------------------------cCCcee
Q 035621          171 MLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT------------------------FPCAIM  226 (387)
Q Consensus       171 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------~~~~v~  226 (387)
                      ....+..|...+..++|.|-.  +++++-+.|...+.+.+...+.+....                        .+....
T Consensus       157 l~~~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr  234 (434)
T KOG1009|consen  157 LLAILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR  234 (434)
T ss_pred             eEeeccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence            888899999999999999885  899999988877777765433222111                        123456


Q ss_pred             EEEeCCCCCeEEEEcc----CCc-----EEEEecccccccc---------------------------c-----------
Q 035621          227 GLALDPTETDFFAAGS----DGL-----IYKGLLKYQSRQQ---------------------------M-----------  259 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~----dg~-----i~i~d~~~~~~~~---------------------------~-----------  259 (387)
                      .++|+|+|..+++...    .+.     .|+++-..-.+..                           .           
T Consensus       235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv  314 (434)
T KOG1009|consen  235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV  314 (434)
T ss_pred             hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence            7888999988887542    222     2444332111000                           0           


Q ss_pred             --------------cccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621          260 --------------HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV  308 (387)
Q Consensus       260 --------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  308 (387)
                                    ....++....+-|-..++.++|++||.+|+..+.||...+--++..++-
T Consensus       315 faiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  315 FAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             EEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence                          0011222233457888999999999999999999999888888777665

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=6.5e-21  Score=171.75  Aligned_cols=289  Identities=14%  Similarity=0.180  Sum_probs=212.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCC---CceeEEEcCccceeeeccccCCCCCeEEEEEcc-CC---
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRS---PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW-SS---   74 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~-~~---   74 (387)
                      +.|+|-...++++...-.|+|||.+.++.+..|..+..   .|+.+.+-.+.  ..+.+.+++.||.|+||+-- ++   
T Consensus      1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~--D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQ--DDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred             eeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeeccc--chhheeeeccCceEEEecccccccCC
Confidence            56788888899998778999999999999888865443   48888887532  33466779999999999642 22   


Q ss_pred             -CcccccC-------C-CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC-CCCCeEEEEEcC-CCCEEEEE
Q 035621           75 -TPLHNIP-------V-PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA-HDKPVSCLKISP-DGSLLISG  143 (387)
Q Consensus        75 -~~~~~~~-------~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~  143 (387)
                       +.+....       . .+.-.-+.|.....+|+++|.-..|+|||.....++..+.. ....|+++.-+- .|+.+++|
T Consensus      1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred             ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEe
Confidence             1111111       1 11123456777666777777788999999988877777653 344567765443 57899999


Q ss_pred             eCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC--eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 035621          144 GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS--VTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-  220 (387)
Q Consensus       144 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-  220 (387)
                      ..||.|++||.+-.         .....+.....|+..  |..+.+.+.+.+ .|++|+.||.|++||++.......+. 
T Consensus      1228 faDGsvRvyD~R~a---------~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~~~~e~~~~i 1297 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMA---------PPDSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRMSSKETFLTI 1297 (1387)
T ss_pred             ecCCceEEeecccC---------CccccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecccCccccccee
Confidence            99999999999643         233466777888887  999999887754 79999999999999999853222222 


Q ss_pred             -----cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621          221 -----FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG  295 (387)
Q Consensus       221 -----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  295 (387)
                           ..+..+++..++....+++|+. +.|.||++...........   ..+.....+.+.+++|+|..-++|+|+.|.
T Consensus      1298 v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n---~~F~~q~~gs~scL~FHP~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1298 VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYN---PGFMGQRIGSVSCLAFHPHRLLLAAGSADS 1373 (1387)
T ss_pred             eeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccC---cccccCcCCCcceeeecchhHhhhhccCCc
Confidence                 1345999999999999999998 9999999976433222111   122233456689999999999999999999


Q ss_pred             cEEEEECCCcc
Q 035621          296 SVYIWEIEKRQ  306 (387)
Q Consensus       296 ~i~iwd~~~~~  306 (387)
                      +|.||....++
T Consensus      1374 ~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1374 TVSIYSCEKPR 1384 (1387)
T ss_pred             eEEEeecCCcC
Confidence            99999987654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.88  E-value=8.2e-19  Score=157.64  Aligned_cols=299  Identities=24%  Similarity=0.412  Sum_probs=221.6

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc-eeEeccCCCC-CceeEEE-cCccceeeeccccCCCCCeEEEEEccC-CCcc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA-ILAHFSGSRS-PRRGLTF-AGKPFIAASHISPTTGSGSVHLYNLWS-STPL   77 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~~   77 (387)
                      +.+.+.+..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ .++..  ......+..|+.+.+|+... ....
T Consensus        71 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~  148 (466)
T COG2319          71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN--SILLASSSLDGTVKLWDLSTPGKLI  148 (466)
T ss_pred             EEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcc--eEEeccCCCCccEEEEEecCCCeEE
Confidence            3577889999999999999999998776 6666766443 6777776 55332  11122245599999999987 4444


Q ss_pred             c-ccCCCCCeeeEEeccCCCEEEEecC-CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEeC
Q 035621           78 H-NIPVPEPVAPLATTADGSYLFTGGL-SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGGDDGVIATVPI  154 (387)
Q Consensus        78 ~-~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~  154 (387)
                      . ...+...+..++|+|++..++.++. ++.+++|+...+..+..+..|...+.+++|+|++. .+++++.|+.|++||.
T Consensus       149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~  228 (466)
T COG2319         149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL  228 (466)
T ss_pred             EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEEC
Confidence            4 4447788999999999998888885 99999999998888899999999999999999998 5555599999999987


Q ss_pred             CcccccCCCCCCCCccceE-eeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-EEEE-ecCCceeEEEeC
Q 035621          155 FQLVDEHTDDKNPDDLMLQ-KFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-LSTV-TFPCAIMGLALD  231 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~v~~~~~~  231 (387)
                                  ....... .+..|.... ...|++++  .++++++.|+.+++|++..... +..+ .+...+.++.|+
T Consensus       229 ------------~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  293 (466)
T COG2319         229 ------------STGKLLRSTLSGHSDSV-VSSFSPDG--SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS  293 (466)
T ss_pred             ------------CCCcEEeeecCCCCcce-eEeECCCC--CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence                        3334444 577777775 33777775  7888999999999999987664 4443 357889999999


Q ss_pred             CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE-eCCCcEEEEECCCccEEEE
Q 035621          232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA-AEDGSVYIWEIEKRQVVMV  310 (387)
Q Consensus       232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~  310 (387)
                      |++..+++++.|+.+.+|+...........       ...|...+..+.|.+++..++.+ ..|+.+.+|++........
T Consensus       294 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  366 (466)
T COG2319         294 PDGKLLASGSSDGTVRLWDLETGKLLSSLT-------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT  366 (466)
T ss_pred             CCCCEEEEeeCCCcEEEEEcCCCceEEEee-------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEE
Confidence            998888888889889999887633211110       23577789999994332556655 6889999999998873333


Q ss_pred             eecccCCCceeEEEEe
Q 035621          311 LKNELAGSISEMVIAT  326 (387)
Q Consensus       311 ~~~~~~~~v~~~~~~~  326 (387)
                      .....  .+..+.+..
T Consensus       367 ~~~~~--~~~~~~~~~  380 (466)
T COG2319         367 LEGHS--NVLSVSFSP  380 (466)
T ss_pred             ecCCc--eEEEEEECC
Confidence            32221  155555544

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=7.1e-22  Score=166.47  Aligned_cols=257  Identities=18%  Similarity=0.188  Sum_probs=189.6

Q ss_pred             EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC--------CcccccC-CCCCeeeEEeccCCCEEEEec
Q 035621           32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--------TPLHNIP-VPEPVAPLATTADGSYLFTGG  102 (387)
Q Consensus        32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  102 (387)
                      .++..|...|+.++|.|    ....+++++.||.+.+|+++..        +++.++. |.++|.|+++.+++..+++|+
T Consensus       288 ~tl~s~~d~ir~l~~~~----sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg  363 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHP----SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG  363 (577)
T ss_pred             eeeecchhhhhhhhcCC----CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence            35667888999999999    5566677999999999999432        2344444 789999999999999999999


Q ss_pred             CCCcEEEEeCCCC----------ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccce
Q 035621          103 LSGNVYAISVPKG----------DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML  172 (387)
Q Consensus       103 ~dg~i~i~d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  172 (387)
                      .||+|+.|++...          .....+.+|.+.|+.+++++....|++++.||+++.|+....            .+ 
T Consensus       364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~------------~~-  430 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE------------SP-  430 (577)
T ss_pred             cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc------------Cc-
Confidence            9999999976422          233457799999999999999899999999999999987321            11 


Q ss_pred             Eeeecc--CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec--------CCceeEEEeCCCCCeEEEEcc
Q 035621          173 QKFVAH--NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF--------PCAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       173 ~~~~~~--~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~  242 (387)
                      ..+...  .+.-.++.+-... ....++...-+.-.++++...+.+..+..        ...+..+.++|.+...+++..
T Consensus       431 ~~f~~~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he  509 (577)
T KOG0642|consen  431 CTFGEPKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE  509 (577)
T ss_pred             cccCCccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc
Confidence            112111  1122233332221 12233333334444555555555555541        145788999999999999999


Q ss_pred             CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc
Q 035621          243 DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL  315 (387)
Q Consensus       243 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  315 (387)
                      |+.|+++|..++..         ......|...++++++.|+|.+|++++.||.+++|.+....++.....|.
T Consensus       510 d~~Ir~~dn~~~~~---------l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  510 DRSIRFFDNKTGKI---------LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             CCceeccccccccc---------chheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            99999999987432         22234788999999999999999999999999999999888887776553

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=6.7e-20  Score=148.28  Aligned_cols=290  Identities=11%  Similarity=0.027  Sum_probs=208.5

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCC------CCceeEecc-CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPS------SGAILAHFS-GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS   74 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~------~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~   74 (387)
                      +.||.++++|++|+.|..+++|++.      +.+++.... .|...|.|++|.....    .+.+|..+++|.+.|+++.
T Consensus        62 lqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~----~~~SG~~~~~VI~HDiEt~  137 (609)
T KOG4227|consen   62 LQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR----FLYSGERWGTVIKHDIETK  137 (609)
T ss_pred             eeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe----eEecCCCcceeEeeecccc
Confidence            6799999999999999999999985      335555443 3557899999997433    3445999999999999999


Q ss_pred             CcccccCCCC---CeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-eeE--EccCCCCCeEEEEEcCC-CCEEEEEeCCC
Q 035621           75 TPLHNIPVPE---PVAPLATTADGSYLFTGGLSGNVYAISVPKGD-ILR--SFSAHDKPVSCLKISPD-GSLLISGGDDG  147 (387)
Q Consensus        75 ~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~dg  147 (387)
                      +.+..+.+..   .|+.+..+|..+.|++.+.++.|.+||.+..+ .+.  .+........++.|+|. ..+|++.+..+
T Consensus       138 qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~  217 (609)
T KOG4227|consen  138 QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETG  217 (609)
T ss_pred             eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccC
Confidence            9988888765   89999999999999999999999999997665 221  12234556788999994 56888899999


Q ss_pred             cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-EEEEecC----
Q 035621          148 VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-LSTVTFP----  222 (387)
Q Consensus       148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~----  222 (387)
                      -+-+||++.......     .......++.....-.++.|+|++  +.|++--....-.+||+.+..+ +..+.|.    
T Consensus       218 G~~~~D~R~~~~~~~-----~~~~~~~L~~~~~~~M~~~~~~~G--~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY  290 (609)
T KOG4227|consen  218 GPNVFDRRMQARPVY-----QRSMFKGLPQENTEWMGSLWSPSG--NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY  290 (609)
T ss_pred             CCCceeeccccchHH-----hhhccccCcccchhhhheeeCCCC--CeehhhhccCCCEEeeeecccceeEeccCCCCcc
Confidence            999999965321110     001111222223334677888875  6666655555556788876443 3344432    


Q ss_pred             ---CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc--------------cccceeEeecccccccEEEEEEecCC
Q 035621          223 ---CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM--------------HKGQELVTLANRHDGVVVSVMMMNEG  285 (387)
Q Consensus       223 ---~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~s~~~  285 (387)
                         ..+.+++|..|- .+++|+.+-.|++|.+.......-              .-.......+++|..-++.+.|+|..
T Consensus       291 ~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~  369 (609)
T KOG4227|consen  291 CNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHN  369 (609)
T ss_pred             eeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCc
Confidence               246677777554 489999999999999865322110              00122334567999999999999999


Q ss_pred             CEEEEEeCCCcEEEEECC
Q 035621          286 KNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       286 ~~l~s~~~dg~i~iwd~~  303 (387)
                      .+|++.+..+.++||.-.
T Consensus       370 ~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  370 NLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ceEeccchhhheeccccc
Confidence            999999999999999743

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.3e-19  Score=158.17  Aligned_cols=297  Identities=14%  Similarity=0.189  Sum_probs=217.0

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV   82 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~   82 (387)
                      .||+|+++++.... ..|.||...|++++..+.+|..++..+.+.|.... +.++.+++.+|.|++||...+.+++.+..
T Consensus        23 vfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~-~~~~~~~sl~G~I~vwd~~~~~Llkt~~~  100 (792)
T KOG1963|consen   23 VFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSEN-ANYLIVCSLDGTIRVWDWSDGELLKTFDN  100 (792)
T ss_pred             ccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCcc-ceEEEEEecCccEEEecCCCcEEEEEEec
Confidence            48999998887664 68999999999999999999999999999985432 34556689999999999988877766653


Q ss_pred             CCCeeeEE-----------------------------------------------------------eccCCCEEEEecC
Q 035621           83 PEPVAPLA-----------------------------------------------------------TTADGSYLFTGGL  103 (387)
Q Consensus        83 ~~~v~~~~-----------------------------------------------------------~~~~~~~l~~~~~  103 (387)
                      ..++..+.                                                           +++.|.+.... .
T Consensus       101 ~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~  179 (792)
T KOG1963|consen  101 NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-H  179 (792)
T ss_pred             CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-E
Confidence            33322222                                                           22222222222 1


Q ss_pred             CCcEEEEeCCCCceeE----EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC
Q 035621          104 SGNVYAISVPKGDILR----SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN  179 (387)
Q Consensus       104 dg~i~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (387)
                      +..+.+|+.+++....    .-..|...+++.+++|++++++++..||.|.+|.-...        .........+.-|.
T Consensus       180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~--------~~~~~t~t~lHWH~  251 (792)
T KOG1963|consen  180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS--------SDDSETCTLLHWHH  251 (792)
T ss_pred             eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc--------ccccccceEEEecc
Confidence            2235566655533110    01246667899999999999999999999999965221        12334456677799


Q ss_pred             CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc
Q 035621          180 DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM  259 (387)
Q Consensus       180 ~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  259 (387)
                      .+|++++|++++  .+|++|+..+.+.+|.+.+++...--+..++|..+.++||+.+.+....|+.|.+....+......
T Consensus       252 ~~V~~L~fS~~G--~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t  329 (792)
T KOG1963|consen  252 DEVNSLSFSSDG--AYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST  329 (792)
T ss_pred             cccceeEEecCC--ceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence            999999999985  999999999999999999998433334789999999999999999999999999998765433322


Q ss_pred             cccceeE--eecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          260 HKGQELV--TLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       260 ~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      ..+....  .......+-.+.++++|.-+.++-.+..|.|.+||+.+.+.+..+.
T Consensus       330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~  384 (792)
T KOG1963|consen  330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ  384 (792)
T ss_pred             ccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence            2221111  0011235567888999977778888899999999999988877664

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.86  E-value=3.1e-19  Score=138.82  Aligned_cols=283  Identities=13%  Similarity=0.179  Sum_probs=200.1

Q ss_pred             ceeEeccCCCCCceeEEEcCccceeeeccccCC----CCCeEEEEEcc--CCCcc--cccCCCCCeeeEEeccCCC----
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTT----GSGSVHLYNLW--SSTPL--HNIPVPEPVAPLATTADGS----   96 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~d~~v~vw~~~--~~~~~--~~~~~~~~v~~~~~~~~~~----   96 (387)
                      +.+..+.. .-++.++.|+.... ..-+++.|+    ..+.|.+-.+.  +++.+  ..+.|+-+++.+.|.|+..    
T Consensus        36 ~eiy~Y~a-p~~lya~~Ws~~~~-~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~p  113 (364)
T KOG0290|consen   36 KEIYTYNA-PWPLYAMNWSVRPD-KKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYP  113 (364)
T ss_pred             ceEEEecC-CCceeeeccccCCC-cceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCc
Confidence            34445543 33478888883110 111122222    34666666553  34333  3467889999999999763    


Q ss_pred             -EEEEecCCCcEEEEeCCC--Cce--eEEc-----cCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621           97 -YLFTGGLSGNVYAISVPK--GDI--LRSF-----SAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDK  165 (387)
Q Consensus        97 -~l~~~~~dg~i~i~d~~~--~~~--~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  165 (387)
                       +||+.+  ..+++|.+..  .+.  ...+     ..+..++++..|+. +.+++.+++-|-+..+||+...        
T Consensus       114 dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~--------  183 (364)
T KOG0290|consen  114 DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG--------  183 (364)
T ss_pred             chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec--------
Confidence             565543  4699999863  221  1111     24567899999988 7789999999999999999331        


Q ss_pred             CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe---c-CCceeEEEeCCCC-CeEEEE
Q 035621          166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT---F-PCAIMGLALDPTE-TDFFAA  240 (387)
Q Consensus       166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~-~~~v~~~~~~~~~-~~l~~~  240 (387)
                       ........+.+|...|..++|...+ .+.|++.+.||.+|+||++..+.-..+.   . ..+...++|++.. +++++-
T Consensus       184 -~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf  261 (364)
T KOG0290|consen  184 -VSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATF  261 (364)
T ss_pred             -cccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhh
Confidence             1233456788999999999999854 5899999999999999999877655543   2 4578899999866 566665


Q ss_pred             cc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCccE------EEEee
Q 035621          241 GS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWEIEKRQV------VMVLK  312 (387)
Q Consensus       241 ~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~------~~~~~  312 (387)
                      .. ...|.+.|++.        .......+.+|.+.|+.++|.|.. ..|++++.|..+.+||+...-.      +..+.
T Consensus       262 ~~dS~~V~iLDiR~--------P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~  333 (364)
T KOG0290|consen  262 AMDSNKVVILDIRV--------PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT  333 (364)
T ss_pred             hcCCceEEEEEecC--------CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh
Confidence            54 56799999997        445555667999999999999964 5899999999999999976322      22222


Q ss_pred             cccCCCceeEEEEecCCCceeeE
Q 035621          313 NELAGSISEMVIATGIGGSRGCG  335 (387)
Q Consensus       313 ~~~~~~v~~~~~~~~~~~~~~~~  335 (387)
                        ..++|+.+.+++..++...+.
T Consensus       334 --a~~EVNqi~Ws~~~~Dwiai~  354 (364)
T KOG0290|consen  334 --AGGEVNQIQWSSSQPDWIAIC  354 (364)
T ss_pred             --ccceeeeeeecccCCCEEEEE
Confidence              456899999998888877554

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.86  E-value=1.1e-19  Score=160.38  Aligned_cols=271  Identities=17%  Similarity=0.173  Sum_probs=191.2

Q ss_pred             CcEEEEeCCCC-ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc--cc-----ccCCCCCeeeE
Q 035621           18 GPITAYNPSSG-AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP--LH-----NIPVPEPVAPL   89 (387)
Q Consensus        18 g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~--~~-----~~~~~~~v~~~   89 (387)
                      +.+.||++... .+...+. -..+|.++.|+|.   ....++.|..+|+|.+||+..+..  ..     ...|..++..+
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~---~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPF---DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV  297 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccC---CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence            47999999876 3333343 5667999999983   334455599999999999987754  22     23377899999


Q ss_pred             EeccCCC--EEEEecCCCcEEEEeCCCCcee------EEcc------CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 035621           90 ATTADGS--YLFTGGLSGNVYAISVPKGDIL------RSFS------AHDKPVSCLKISP-DGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        90 ~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~------~~~~------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~  154 (387)
                      .|..+..  -+++++.||.|..|+++.-...      ....      .-...++++.|.+ +...+++|+.+|.|.-=+-
T Consensus       298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r  377 (555)
T KOG1587|consen  298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR  377 (555)
T ss_pred             EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence            9987544  4999999999999987543221      0011      1134688999988 5668999999998865222


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-CCcEEEEEe-cCCceeEEEeCC
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL-NGTHLSTVT-FPCAIMGLALDP  232 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~  232 (387)
                      ......    .....+....+..|.++|.++.++|-. ...+++++ |.+++||... ...++..+. ....+++++|||
T Consensus       378 ~g~~~~----~~~~~~~~~~~~~h~g~v~~v~~nPF~-~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSp  451 (555)
T KOG1587|consen  378 KGYTPA----PEVSYKGHSTFITHIGPVYAVSRNPFY-PKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSP  451 (555)
T ss_pred             cCCccc----ccccccccccccccCcceEeeecCCCc-cceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcC
Confidence            111000    001123345667889999999999987 34555555 9999999987 666666665 456699999999


Q ss_pred             CCC-eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621          233 TET-DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       233 ~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  305 (387)
                      ... .++++..+|.+.+||+.......       ......+....+.+.|++.|+.|++|...|.+++|++...
T Consensus       452 trpavF~~~d~~G~l~iWDLl~~~~~P-------v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  452 TRPAVFATVDGDGNLDIWDLLQDDEEP-------VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             cCceEEEEEcCCCceehhhhhccccCC-------cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            875 55666779999999998743221       1111223556778888999999999999999999998643

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.86  E-value=4.4e-20  Score=143.38  Aligned_cols=263  Identities=16%  Similarity=0.173  Sum_probs=181.4

Q ss_pred             cccCC-CcEEEeeCCC-------CcEEEEeCCCC---------ceeEecc-CCCCCceeEEEcCccceeeeccccCCCCC
Q 035621            3 HHLPC-NEVILTSSPE-------GPITAYNPSSG---------AILAHFS-GSRSPRRGLTFAGKPFIAASHISPTTGSG   64 (387)
Q Consensus         3 ~~s~~-~~~l~~~~~d-------g~i~iwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~d~   64 (387)
                      +-+|- .++|+++..+       ..+.||.+...         +.+..+. .+-+.|.|+.|.|+..-+++     -.|.
T Consensus        70 as~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas-----m~dn  144 (370)
T KOG1007|consen   70 ASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS-----MDDN  144 (370)
T ss_pred             hcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE-----eccC
Confidence            34563 4566665432       23788987532         3334443 45668999999996655553     3589


Q ss_pred             eEEEEEccCCCc-ccccC------CCCCeeeEEecc--CCCEEEEecCCCcEEEEeCCCCceeEEcc-CCCCCeEEEEEc
Q 035621           65 SVHLYNLWSSTP-LHNIP------VPEPVAPLATTA--DGSYLFTGGLSGNVYAISVPKGDILRSFS-AHDKPVSCLKIS  134 (387)
Q Consensus        65 ~v~vw~~~~~~~-~~~~~------~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~  134 (387)
                      .|.+|+++.+.. ...+.      +....++-+|+|  +++.+++. .|+++..||+++.++...++ +|...|..+.|+
T Consensus       145 ~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfN  223 (370)
T KOG1007|consen  145 NIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFN  223 (370)
T ss_pred             ceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCC
Confidence            999999987755 33332      334577888998  77777776 58899999999888777665 788899999999


Q ss_pred             CCCC-EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC
Q 035621          135 PDGS-LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG  213 (387)
Q Consensus       135 ~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  213 (387)
                      |+.+ +|++++.||.|++||.++           ...+++.+.+|...|.++.|.|.. .+++++++.|..|.+|....-
T Consensus       224 pnkq~~lvt~gDdgyvriWD~R~-----------tk~pv~el~~HsHWvW~VRfn~~h-dqLiLs~~SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  224 PNKQHILVTCGDDGYVRIWDTRK-----------TKFPVQELPGHSHWVWAVRFNPEH-DQLILSGGSDSAVNLSCASSV  291 (370)
T ss_pred             CCceEEEEEcCCCccEEEEeccC-----------CCccccccCCCceEEEEEEecCcc-ceEEEecCCCceeEEEecccc
Confidence            9766 788999999999999974           667889999999999999999987 589999999999999987643


Q ss_pred             cEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC-EEEEEe
Q 035621          214 THLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAA  292 (387)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~  292 (387)
                      .....+........   .++.        |         ..++.. .-.......+..|...|.+++||.-.. .||+-+
T Consensus       292 SSE~qi~~~~dese---~e~~--------d---------seer~k-pL~dg~l~tydehEDSVY~~aWSsadPWiFASLS  350 (370)
T KOG1007|consen  292 SSEQQIEFEDDESE---SEDE--------D---------SEERVK-PLQDGQLETYDEHEDSVYALAWSSADPWIFASLS  350 (370)
T ss_pred             cccccccccccccc---Ccch--------h---------hHHhcc-cccccccccccccccceEEEeeccCCCeeEEEec
Confidence            32222221110000   0000        0         000000 001122233457999999999986555 667889


Q ss_pred             CCCcEEEEECCC
Q 035621          293 EDGSVYIWEIEK  304 (387)
Q Consensus       293 ~dg~i~iwd~~~  304 (387)
                      .||.+.|=.+..
T Consensus       351 YDGRviIs~V~r  362 (370)
T KOG1007|consen  351 YDGRVIISSVPR  362 (370)
T ss_pred             cCceEEeecCCh
Confidence            999998866553

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.86  E-value=4e-21  Score=158.35  Aligned_cols=271  Identities=18%  Similarity=0.182  Sum_probs=218.9

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      +.++.+|+.|+.|+..|.|..+|..++++..++. -...|.++.|..+..+.+     ......+.||| ..|..++.++
T Consensus       135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~A-----VAQK~y~yvYD-~~GtElHClk  207 (545)
T KOG1272|consen  135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFA-----VAQKKYVYVYD-NNGTELHCLK  207 (545)
T ss_pred             eeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHH-----hhhhceEEEec-CCCcEEeehh
Confidence            4578899999999999999999999999998886 345589999987555444     56788999999 4788888888


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                      ....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+|-+..+-+|...|+|.+|..       
T Consensus       208 ~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP-------  280 (545)
T KOG1272|consen  208 RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP-------  280 (545)
T ss_pred             hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC-------
Confidence            8899999999999999999999999999999999999999888899999999999999999999999999987       


Q ss_pred             CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc
Q 035621          162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  241 (387)
                           ....++..+..|.++|.+|++.+++  ++++|.+.|..++|||++....+.++..+.+...+++|..|  +++.+
T Consensus       281 -----~skePLvKiLcH~g~V~siAv~~~G--~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~  351 (545)
T KOG1272|consen  281 -----NSKEPLVKILCHRGPVSSIAVDRGG--RYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALS  351 (545)
T ss_pred             -----CCcchHHHHHhcCCCcceEEECCCC--cEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeee
Confidence                 5677888888999999999999885  99999999999999999999888888778888889998765  44555


Q ss_pred             cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEE
Q 035621          242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYI  299 (387)
Q Consensus       242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  299 (387)
                      ....+.+|.-......    ............++|..+.|.|-...|-.|-..|.-.|
T Consensus       352 ~G~~v~iw~d~~~~s~----~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi  405 (545)
T KOG1272|consen  352 YGDHVQIWKDALKGSG----HGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI  405 (545)
T ss_pred             cCCeeeeehhhhcCCC----CCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence            5567888853321110    00001111122458999999997666666655554333

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.86  E-value=3.7e-18  Score=147.31  Aligned_cols=274  Identities=14%  Similarity=0.178  Sum_probs=176.3

Q ss_pred             EEeeCCCCcEEEEeCCC-Cc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CCc--ccccCCCC
Q 035621           11 ILTSSPEGPITAYNPSS-GA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-STP--LHNIPVPE   84 (387)
Q Consensus        11 l~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~--~~~~~~~~   84 (387)
                      +++...++.|.+|++.+ ++  .+..+. +.+....++++|++..+..   ++..++.|.+|+++. ++.  ........
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv---~~~~~~~i~~~~~~~~g~l~~~~~~~~~~   80 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYV---GVRPEFRVLSYRIADDGALTFAAESPLPG   80 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEE---EECCCCcEEEEEECCCCceEEeeeecCCC
Confidence            44456789999999964 43  445554 3455778999996543321   134678999999963 332  23333445


Q ss_pred             CeeeEEeccCCCEEEEecC-CCcEEEEeCCC-C---ceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCccc
Q 035621           85 PVAPLATTADGSYLFTGGL-SGNVYAISVPK-G---DILRSFSAHDKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLV  158 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~  158 (387)
                      ....++++|+++++++++. ++.|.+|++.+ +   +.+..+. +.....+++++|+++++++++ .++.|.+||+....
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence            6778999999999888764 78999999864 3   2223332 234567889999999886555 56999999994311


Q ss_pred             ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CCcEEEEeCCC--Cc--EEEEEe-cC------Ccee
Q 035621          159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DCTCKFWRLLN--GT--HLSTVT-FP------CAIM  226 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~--~~--~~~~~~-~~------~~v~  226 (387)
                      ...     .......... .......++|+|++  ++++++.. +++|.+|++..  ++  .+..+. .+      ....
T Consensus       160 ~l~-----~~~~~~~~~~-~g~~p~~~~~~pdg--~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  231 (330)
T PRK11028        160 HLV-----AQEPAEVTTV-EGAGPRHMVFHPNQ--QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA  231 (330)
T ss_pred             ccc-----ccCCCceecC-CCCCCceEEECCCC--CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence            000     0000001111 12345678998875  77766665 89999999973  32  233332 11      1234


Q ss_pred             EEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC-CCcEEEEECC
Q 035621          227 GLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE-DGSVYIWEIE  303 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~  303 (387)
                      .+.++|++++++++.. ++.|.+|++.......     .+...... ......+.++|+|++|+++.. +++|.+|+++
T Consensus       232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-----~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        232 DIHITPDGRHLYACDRTASLISVFSVSEDGSVL-----SFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             eEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-----EEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            6889999999999865 7899999996532110     11111111 124567899999999997765 8999999874

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=1.4e-17  Score=149.72  Aligned_cols=275  Identities=24%  Similarity=0.425  Sum_probs=210.8

Q ss_pred             ccccCCCcEEEeeCC-CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-c
Q 035621            2 LHHLPCNEVILTSSP-EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-N   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~   79 (387)
                      ++|+|++..+++++. |+.+++|+..++..+..+.+|...|.+++|+|+..   ..+++++.|+.+++||...+.... .
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~d~~i~~wd~~~~~~~~~~  237 (466)
T COG2319         161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG---LLIASGSSDGTIRLWDLSTGKLLRST  237 (466)
T ss_pred             EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc---eEEEEecCCCcEEEEECCCCcEEeee
Confidence            579999998888885 99999999998889999999999999999998654   122225899999999988776666 3


Q ss_pred             cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce-eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621           80 IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI-LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL  157 (387)
Q Consensus        80 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  157 (387)
                      +. +.... ...|++++.++++++.++.+++|+...... ...+..|...+.++.|+|++..+++++.|+.+.+||..  
T Consensus       238 ~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~--  314 (466)
T COG2319         238 LSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE--  314 (466)
T ss_pred             cCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC--
Confidence            44 33443 338999998899999999999999987664 44446788999999999988888889999999999883  


Q ss_pred             cccCCCCCCCCccceEee--eccCCCeEEEEEeeCCCCceEEEE-eCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621          158 VDEHTDDKNPDDLMLQKF--VAHNDSVTAITCCIGSFNSIIISC-SMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE  234 (387)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  234 (387)
                                ........  ..|...+..+.+ + .++..++.+ ..|+.+.+|++..............+..+.+.+ .
T Consensus       315 ----------~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  381 (466)
T COG2319         315 ----------TGKLLSSLTLKGHEGPVSSLSF-S-PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D  381 (466)
T ss_pred             ----------CCceEEEeeecccCCceEEEEE-C-CCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C
Confidence                      33333333  367778899988 5 322445555 678999999999887333333344488999999 6


Q ss_pred             CeEEE-EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          235 TDFFA-AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       235 ~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      ..+.. +..++.+.+|+......        ..... .+...+....+++++..+++++.++.+++|+..+
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         382 GRVVSSGSTDGTVRLWDLSTGSL--------LRNLD-GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CCEEEEecCCCceEEEecccCee--------eeecc-CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            44444 57899999999987322        11111 1117889999999999999999999999999998

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.85  E-value=1.1e-18  Score=135.76  Aligned_cols=271  Identities=13%  Similarity=0.140  Sum_probs=190.0

Q ss_pred             CcEEEeeC----CCCcEEEEeCC--CCceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--c--
Q 035621            8 NEVILTSS----PEGPITAYNPS--SGAILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--P--   76 (387)
Q Consensus         8 ~~~l~~~~----~dg~i~iwd~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~--   76 (387)
                      +.+||.|+    ..+.|.|-.+.  +++.+..- ..|.-+++.+.|.|+..-....+. ++.+..+++|.+...+  .  
T Consensus        59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL-ATs~D~LRlWri~~ee~~~~~  137 (364)
T KOG0290|consen   59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL-ATSSDFLRLWRIGDEESRVEL  137 (364)
T ss_pred             ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh-hcccCeEEEEeccCcCCceeh
Confidence            35788887    34567765543  44443322 358899999999996532222222 3345689999986321  1  


Q ss_pred             cc------ccCCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCce---eEEccCCCCCeEEEEEcCCC-CEEEEEeC
Q 035621           77 LH------NIPVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDI---LRSFSAHDKPVSCLKISPDG-SLLISGGD  145 (387)
Q Consensus        77 ~~------~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~  145 (387)
                      ..      .-++..+++++.|+. +-+++.+.+-|-+..|||++++..   ...+-+|...|..++|...+ +.+++.+.
T Consensus       138 ~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvga  217 (364)
T KOG0290|consen  138 QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGA  217 (364)
T ss_pred             hhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecC
Confidence            11      112456899999987 678999999999999999998733   45667899999999999855 48899999


Q ss_pred             CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-CcEEEEeCCCC-cEEEEEe-cC
Q 035621          146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-CTCKFWRLLNG-THLSTVT-FP  222 (387)
Q Consensus       146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~-~~~~~~~-~~  222 (387)
                      ||++++||++.+         .....+.+-.....+...++|++.. .+++++-..| ..|.|.|++.. .++..++ |.
T Consensus       218 DGSvRmFDLR~l---------eHSTIIYE~p~~~~pLlRLswnkqD-pnymATf~~dS~~V~iLDiR~P~tpva~L~~H~  287 (364)
T KOG0290|consen  218 DGSVRMFDLRSL---------EHSTIIYEDPSPSTPLLRLSWNKQD-PNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ  287 (364)
T ss_pred             CCcEEEEEeccc---------ccceEEecCCCCCCcceeeccCcCC-chHHhhhhcCCceEEEEEecCCCcceehhhcCc
Confidence            999999999765         2222333333335677788887764 5777776655 57999999864 4555565 88


Q ss_pred             CceeEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEEeC
Q 035621          223 CAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSAAE  293 (387)
Q Consensus       223 ~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~  293 (387)
                      ..|+.++|.|.. ..|++++.|....+||+....+....  .++...  .-.+.|+.+.|++ .+.+|+.+..
T Consensus       288 a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~--dPilay--~a~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  288 ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE--DPILAY--TAGGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             ccccceEecCCCCceeeecCCcceEEEEecccccccCCC--Cchhhh--hccceeeeeeecccCCCEEEEEec
Confidence            999999999975 67899999999999999875542111  112221  3567899999996 4567777643

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.85  E-value=4.7e-20  Score=141.38  Aligned_cols=254  Identities=15%  Similarity=0.146  Sum_probs=184.2

Q ss_pred             eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621           30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPVAPLATTADGSYLFTGGLSGNV  107 (387)
Q Consensus        30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i  107 (387)
                      +...+++|.+.|+++.|..+..     +.++...|.|++|++++......+.  +...|+.+.-.|+ ..+.+-+.|+.+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-----L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L   79 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-----LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL   79 (323)
T ss_pred             CeeEeccccchheehhhccchh-----hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence            4556778999999999987443     5558999999999999988877776  4567888988887 467788899999


Q ss_pred             EEEeCCCCceeEE--------------c---------------------------------------cCCCCCeEEEEEc
Q 035621          108 YAISVPKGDILRS--------------F---------------------------------------SAHDKPVSCLKIS  134 (387)
Q Consensus       108 ~i~d~~~~~~~~~--------------~---------------------------------------~~~~~~v~~~~~~  134 (387)
                      .+|++..+..+..              +                                       .+..+.+.|..+.
T Consensus        80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~  159 (323)
T KOG0322|consen   80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD  159 (323)
T ss_pred             EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence            9999855221100              0                                       0012334444432


Q ss_pred             C-CCC--EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC
Q 035621          135 P-DGS--LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL  211 (387)
Q Consensus       135 ~-~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  211 (387)
                      . ++.  ++++|.++|.+.+||+.....  ........+.......|..+|.++.+.+..  +.=++|+.+..+..|++.
T Consensus       160 ~~c~s~~lllaGyEsghvv~wd~S~~~~--~~~~~~~~kv~~~~ash~qpvlsldyas~~--~rGisgga~dkl~~~Sl~  235 (323)
T KOG0322|consen  160 HACGSTFLLLAGYESGHVVIWDLSTGDK--IIQLPQSSKVESPNASHKQPVLSLDYASSC--DRGISGGADDKLVMYSLN  235 (323)
T ss_pred             ccccceEEEEEeccCCeEEEEEccCCce--eeccccccccccchhhccCcceeeeechhh--cCCcCCCccccceeeeec
Confidence            2 222  567888999999999943200  000112224445556799999999998664  455677888889999886


Q ss_pred             CC--cEE--EEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC
Q 035621          212 NG--THL--STVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK  286 (387)
Q Consensus       212 ~~--~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  286 (387)
                      ..  .+.  ..+. .+..+..+.+-||++.+++++.|+.|++|..++.         .....+.-|.+.|++++|+|+..
T Consensus       236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---------~pLAVLkyHsagvn~vAfspd~~  306 (323)
T KOG0322|consen  236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAGVNAVAFSPDCE  306 (323)
T ss_pred             cccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---------CchhhhhhhhcceeEEEeCCCCc
Confidence            43  222  2222 3457889999999999999999999999999983         33444567999999999999999


Q ss_pred             EEEEEeCCCcEEEEEC
Q 035621          287 NLVSAAEDGSVYIWEI  302 (387)
Q Consensus       287 ~l~s~~~dg~i~iwd~  302 (387)
                      .+|+++.|++|.+|++
T Consensus       307 lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  307 LMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhccCCceEEeeec
Confidence            9999999999999986

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.85  E-value=6.2e-20  Score=140.73  Aligned_cols=232  Identities=16%  Similarity=0.147  Sum_probs=171.0

Q ss_pred             ccCCCcEEEeeCCCCcEEEEeCCCCceeEecc-CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc----
Q 035621            4 HLPCNEVILTSSPEGPITAYNPSSGAILAHFS-GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH----   78 (387)
Q Consensus         4 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~----   78 (387)
                      |-.++ +|.+|...|.|++|++++......+. .|...|+.+...|+..     +.+-+.|+.+.+|++..+..+.    
T Consensus        22 fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~-----l~tqgRd~~L~lw~ia~s~~i~i~Si   95 (323)
T KOG0322|consen   22 FQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS-----LDTQGRDPLLILWTIAYSAFISIHSI   95 (323)
T ss_pred             hccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc-----hhhcCCCceEEEEEccCcceEEEeee
Confidence            33344 58899999999999999998888887 5677799888888433     3346899999999886411100    


Q ss_pred             -----------------------ccC---------------------------CCCCeeeEEecc-CCC--EEEEecCCC
Q 035621           79 -----------------------NIP---------------------------VPEPVAPLATTA-DGS--YLFTGGLSG  105 (387)
Q Consensus        79 -----------------------~~~---------------------------~~~~v~~~~~~~-~~~--~l~~~~~dg  105 (387)
                                             .+.                           ..+.+.|..+.. ++.  ++++|..+|
T Consensus        96 ~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsg  175 (323)
T KOG0322|consen   96 VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESG  175 (323)
T ss_pred             eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCC
Confidence                                   000                           001233333222 222  567788999


Q ss_pred             cEEEEeCCCCce----------eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee
Q 035621          106 NVYAISVPKGDI----------LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF  175 (387)
Q Consensus       106 ~i~i~d~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  175 (387)
                      .+.+||+.++..          +.....|..+|.++.|.+.-..=++|+.+..+..|.+....        ..-......
T Consensus       176 hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~--------gslq~~~e~  247 (323)
T KOG0322|consen  176 HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST--------GSLQIRKEI  247 (323)
T ss_pred             eEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc--------CcccccceE
Confidence            999999988733          33445689999999999876677888888899999884311        011111222


Q ss_pred             eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEec
Q 035621          176 VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLL  251 (387)
Q Consensus       176 ~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  251 (387)
                      .-..-.|..+.+.|++  ++++|+++|+.||+|..++..++..++ |...|++++|+|+...+++++.|+.|.+|++
T Consensus       248 ~lknpGv~gvrIRpD~--KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  248 TLKNPGVSGVRIRPDG--KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EecCCCccceEEccCC--cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            3334567778888885  999999999999999999999999988 7789999999999999999999999999986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.84  E-value=2.2e-19  Score=150.87  Aligned_cols=206  Identities=17%  Similarity=0.300  Sum_probs=160.0

Q ss_pred             ccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEc
Q 035621           56 HISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKIS  134 (387)
Q Consensus        56 ~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  134 (387)
                      .++.++.||.+.+.+- .++..+.+. |.+.+.+-.|+|||.-|++++.||.|++|. ++|-+..++.....+|.|++|.
T Consensus        77 ~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~  154 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA  154 (737)
T ss_pred             eEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC
Confidence            3445788999998874 444444444 778899999999999999999999999998 5676666666667899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc
Q 035621          135 PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT  214 (387)
Q Consensus       135 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  214 (387)
                      |+.+.++.+.. +.+.+=.+            .....+..+++|.+-|.++.|++..  +++++|++|-..++||-....
T Consensus       155 p~S~~vl~c~g-~h~~IKpL------------~~n~k~i~WkAHDGiiL~~~W~~~s--~lI~sgGED~kfKvWD~~G~~  219 (737)
T KOG1524|consen  155 PNSNSIVFCQG-GHISIKPL------------AANSKIIRWRAHDGLVLSLSWSTQS--NIIASGGEDFRFKIWDAQGAN  219 (737)
T ss_pred             CCCCceEEecC-CeEEEeec------------ccccceeEEeccCcEEEEeecCccc--cceeecCCceeEEeecccCcc
Confidence            98776555433 45555544            3445567789999999999999886  899999999999999976544


Q ss_pred             EEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC
Q 035621          215 HLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED  294 (387)
Q Consensus       215 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  294 (387)
                      ....-.+..+|++++|+|+ ..++.++.+ ..+                    +.....+.|..++||+||..+++|+..
T Consensus       220 Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R--------------------~~~p~~GSifnlsWS~DGTQ~a~gt~~  277 (737)
T KOG1524|consen  220 LFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR--------------------FSSPRVGSIFNLSWSADGTQATCGTST  277 (737)
T ss_pred             cccCChhccceeeeeeccc-cceeeeeee-eee--------------------ecCCCccceEEEEEcCCCceeeccccC
Confidence            4445558899999999999 566655532 111                    223567889999999999999999999


Q ss_pred             CcEEEE
Q 035621          295 GSVYIW  300 (387)
Q Consensus       295 g~i~iw  300 (387)
                      |.+.+=
T Consensus       278 G~v~~A  283 (737)
T KOG1524|consen  278 GQLIVA  283 (737)
T ss_pred             ceEEEe
Confidence            987653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=1.9e-19  Score=145.60  Aligned_cols=207  Identities=13%  Similarity=0.187  Sum_probs=159.7

Q ss_pred             EccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEE
Q 035621          120 SFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS  198 (387)
Q Consensus       120 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s  198 (387)
                      .+.+|+++|..++|+| +...+++|++|.+|.+|.+.......     .-..++..+.+|+..|.-++|+|.. .+.|++
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-----~ltepvv~L~gH~rrVg~V~wHPtA-~NVLls  149 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-----DLTEPVVELYGHQRRVGLVQWHPTA-PNVLLS  149 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-----CcccceEEEeecceeEEEEeecccc-hhhHhh
Confidence            4568999999999999 66789999999999999995432221     2336788899999999999999986 689999


Q ss_pred             EeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccc-cEE
Q 035621          199 CSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDG-VVV  277 (387)
Q Consensus       199 ~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~  277 (387)
                      ++.|.+|.+||+.+++.+.++.|+..|.++.|+.+|.++++.+.|..|++||.+.+....         ...+|.+ .-.
T Consensus       150 ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~---------e~~~heG~k~~  220 (472)
T KOG0303|consen  150 AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS---------EGVAHEGAKPA  220 (472)
T ss_pred             ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee---------ecccccCCCcc
Confidence            999999999999999999999999999999999999999999999999999999844322         2235554 345


Q ss_pred             EEEEecCCCEEEEEe---CCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCceeeEEEecCCCC
Q 035621          278 SVMMMNEGKNLVSAA---EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVVKTGKAG  343 (387)
Q Consensus       278 ~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  343 (387)
                      .+.|-.+|..+.||-   .+..+-+||..+-+.-..+..  -..-+++.|.--.+|...+++|..|+..
T Consensus       221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e--lDtSnGvl~PFyD~dt~ivYl~GKGD~~  287 (472)
T KOG0303|consen  221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE--LDTSNGVLLPFYDPDTSIVYLCGKGDSS  287 (472)
T ss_pred             eeEEeccCceeeeccccccccceeccCcccccCcceeEE--eccCCceEEeeecCCCCEEEEEecCCcc
Confidence            666778888555553   578899999876443322221  1133456666666666667777766653

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=4e-18  Score=151.40  Aligned_cols=309  Identities=13%  Similarity=0.178  Sum_probs=207.9

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCC--C--ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSS--G--AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL   77 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~   77 (387)
                      .++||+++++|+|..||.|.+|.--.  +  .....+.=|..+|.+++|+++    +.++.+|+..+.+.+|.+.+++..
T Consensus       211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~----G~~LlSGG~E~VLv~Wq~~T~~kq  286 (792)
T KOG1963|consen  211 VALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD----GAYLLSGGREGVLVLWQLETGKKQ  286 (792)
T ss_pred             EEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC----CceEeecccceEEEEEeecCCCcc
Confidence            57899999999999999999997432  1  224455668889999999994    455666999999999999999844


Q ss_pred             cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC-----------CCCCeEEEEEcCCCCEEEEEeCC
Q 035621           78 HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA-----------HDKPVSCLKISPDGSLLISGGDD  146 (387)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d  146 (387)
                      ..-+...+|..+.++||+.+.+....|..|.+....+.+...++.+           ..+-.+.++++|..+.++-.+..
T Consensus       287 fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~  366 (792)
T KOG1963|consen  287 FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHP  366 (792)
T ss_pred             cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCC
Confidence            4445778999999999999999999999999998866654444332           13446778999977788888999


Q ss_pred             CcEEEEeCCcccccCCCCCCCCccceEeeec------cCCCeEEEEEeeCCCCceEEEEeC--------C--CcEEEEeC
Q 035621          147 GVIATVPIFQLVDEHTDDKNPDDLMLQKFVA------HNDSVTAITCCIGSFNSIIISCSM--------D--CTCKFWRL  210 (387)
Q Consensus       147 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~s~~~--------d--~~i~iwd~  210 (387)
                      |.|.+||+.+.....       ...+.....      +.-.++.++.+..  +++++|.-.        |  -.+++|-.
T Consensus       367 g~vQ~ydl~td~~i~-------~~~v~~~n~~~~~~n~~v~itav~~~~~--gs~maT~E~~~d~~~~~~~e~~LKFW~~  437 (792)
T KOG1963|consen  367 GHVQFYDLYTDSTIY-------KLQVCDENYSDGDVNIQVGITAVARSRF--GSWMATLEARIDKFNFFDGEVSLKFWQY  437 (792)
T ss_pred             ceEEEEeccccceee-------eEEEEeecccCCcceeEEeeeeehhhcc--ceEEEEeeeeehhhhccCceEEEEEEEE
Confidence            999999994321110       001111111      2223455554444  578877642        3  35788876


Q ss_pred             CCCc----EEEEEe--cCCceeEEEeC-CCCC-eEEEEccCCcEEEEecccccccc-ccccceeEeecccccccEEEEEE
Q 035621          211 LNGT----HLSTVT--FPCAIMGLALD-PTET-DFFAAGSDGLIYKGLLKYQSRQQ-MHKGQELVTLANRHDGVVVSVMM  281 (387)
Q Consensus       211 ~~~~----~~~~~~--~~~~v~~~~~~-~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~  281 (387)
                      ....    ....+.  |...+...++. |... .+++++.||.+++|-+....... ......+...-.-|..++++++|
T Consensus       438 n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f  517 (792)
T KOG1963|consen  438 NPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF  517 (792)
T ss_pred             cCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence            5443    233333  44444444443 3333 78999999999999985533221 11233344333347889999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEE
Q 035621          282 MNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVI  324 (387)
Q Consensus       282 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  324 (387)
                      +.||..|+. +.|++|.+||..+...+....+....++..+++
T Consensus       518 s~dGslla~-s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~  559 (792)
T KOG1963|consen  518 SQDGSLLAV-SFDDTITIWDYDTKNELLCTEGSRNWPIAELLF  559 (792)
T ss_pred             cCCCcEEEE-ecCCEEEEecCCChhhhhccccccccchHhHhh
Confidence            999976655 478899999999843333333333444444433

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=2.2e-18  Score=139.49  Aligned_cols=226  Identities=15%  Similarity=0.152  Sum_probs=170.6

Q ss_pred             CCCCCeEEEEEc-cCCCcccccC----CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCC-------ceeEEccCCCC
Q 035621           60 TTGSGSVHLYNL-WSSTPLHNIP----VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKG-------DILRSFSAHDK  126 (387)
Q Consensus        60 ~~~d~~v~vw~~-~~~~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~  126 (387)
                      ++..|...+.-+ ++|+.-..+.    |..+|..++|.| +.+.||+|+.|.+|.||++..+       +++..+.+|..
T Consensus        53 asgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~r  132 (472)
T KOG0303|consen   53 ASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQR  132 (472)
T ss_pred             cCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecce
Confidence            444455555444 2343333332    778999999999 5678999999999999999765       45677889999


Q ss_pred             CeEEEEEcCC-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcE
Q 035621          127 PVSCLKISPD-GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC  205 (387)
Q Consensus       127 ~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i  205 (387)
                      .|-.++|+|. .+.|++++.|..|.+|++            .++..+.++. |...|.++.|+.++  .+|++.+.|..|
T Consensus       133 rVg~V~wHPtA~NVLlsag~Dn~v~iWnv------------~tgeali~l~-hpd~i~S~sfn~dG--s~l~TtckDKkv  197 (472)
T KOG0303|consen  133 RVGLVQWHPTAPNVLLSAGSDNTVSIWNV------------GTGEALITLD-HPDMVYSMSFNRDG--SLLCTTCKDKKV  197 (472)
T ss_pred             eEEEEeecccchhhHhhccCCceEEEEec------------cCCceeeecC-CCCeEEEEEeccCC--ceeeeeccccee
Confidence            9999999994 568999999999999999            6666777766 99999999998875  999999999999


Q ss_pred             EEEeCCCCcEEEEEe-c-CCceeEEEeCCCCCeEEEEcc---CCcEEEEeccccccccccccceeEeecccccccEEEEE
Q 035621          206 KFWRLLNGTHLSTVT-F-PCAIMGLALDPTETDFFAAGS---DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVM  280 (387)
Q Consensus       206 ~iwd~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  280 (387)
                      +|||.++++.+..-. | ......+.|-.++..+-+|..   +..+-+||...-...     ..... + ..++.|.---
T Consensus       198 Rv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP-----~~~~e-l-DtSnGvl~PF  270 (472)
T KOG0303|consen  198 RVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP-----IALQE-L-DTSNGVLLPF  270 (472)
T ss_pred             EEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc-----ceeEE-e-ccCCceEEee
Confidence            999999999887764 3 234566778888885555533   778999998763211     11111 1 3455666667


Q ss_pred             EecCCCEEE-EEeCCCcEEEEECCCccE
Q 035621          281 MMNEGKNLV-SAAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       281 ~s~~~~~l~-s~~~dg~i~iwd~~~~~~  307 (387)
                      |.+|.+.+. +|-.|+.||-|.+.+..+
T Consensus       271 yD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  271 YDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             ecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            888888766 555799999999988763

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.83  E-value=5.2e-18  Score=146.40  Aligned_cols=225  Identities=13%  Similarity=0.156  Sum_probs=170.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|+.||+++|+|+.|..|.+|+.+-.. +-.+ .|.+.|.|+.|+|    ....+++++- ...-+|..+.. .+...+
T Consensus        59 VAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP----~~h~LasCsL-sdFglWS~~qK-~V~K~k  130 (1081)
T KOG1538|consen   59 VAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNP----ITHQLASCSL-SDFGLWSPEQK-SVSKHK  130 (1081)
T ss_pred             EEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCc----hHHHhhhcch-hhccccChhhh-hHHhhh
Confidence            6899999999999999999999964222 2223 4999999999999    4444444443 34667876433 333344


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc---CCCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEe
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS---AHDKPVSCLKISPDG-----SLLISGGDDGVIATVP  153 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd  153 (387)
                      ....+.+++|..||.+++.|-.+|+|.+-+- +++....+.   +.+.+|.+++|+|..     ..+++.....++.++.
T Consensus       131 ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~  209 (1081)
T KOG1538|consen  131 SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQ  209 (1081)
T ss_pred             hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEE
Confidence            5567899999999999999999999999874 454433333   467899999999953     4788888888888887


Q ss_pred             CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCC
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDP  232 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~  232 (387)
                      +             .+..+..-..-.-.-.|+.+.+++  .+++.|+.|+.+++|- +.|-.+.++. ....|..++..|
T Consensus       210 L-------------sG~~Igk~r~L~FdP~CisYf~NG--Ey~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P  273 (1081)
T KOG1538|consen  210 L-------------SGKQIGKDRALNFDPCCISYFTNG--EYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP  273 (1081)
T ss_pred             e-------------cceeecccccCCCCchhheeccCC--cEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc
Confidence            7             223333222233344578888875  9999999999999995 6676676665 677899999999


Q ss_pred             CCCeEEEEccCCcEEEEec
Q 035621          233 TETDFFAAGSDGLIYKGLL  251 (387)
Q Consensus       233 ~~~~l~~~~~dg~i~i~d~  251 (387)
                      ++++++.|+.||+|..|++
T Consensus       274 NsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  274 NSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             CCceEEEEEccCeeehhhh
Confidence            9999999999999988876

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=4.7e-19  Score=144.73  Aligned_cols=197  Identities=20%  Similarity=0.166  Sum_probs=147.8

Q ss_pred             eeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCC
Q 035621           87 APLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKN  166 (387)
Q Consensus        87 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  166 (387)
                      .+++|+++|..+++|+.||.+++|+.++...+.....|.+.|.++.|+|||++|++.+.| ..++|+....         
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g---------  217 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG---------  217 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC---------
Confidence            679999999999999999999999998888888888899999999999999999999999 8999999543         


Q ss_pred             CCccceEeee--ccCCCeEEEEEeeCCCCc--eE-EEEeCCCcEEEEeCCCCcE---E---EEEecCCceeEEEeCCCCC
Q 035621          167 PDDLMLQKFV--AHNDSVTAITCCIGSFNS--II-ISCSMDCTCKFWRLLNGTH---L---STVTFPCAIMGLALDPTET  235 (387)
Q Consensus       167 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~~--~l-~s~~~d~~i~iwd~~~~~~---~---~~~~~~~~v~~~~~~~~~~  235 (387)
                         ..+....  ........+.|..++.+.  ++ +....-+.|+.||+...+.   +   +.+.....|.+++.+++|+
T Consensus       218 ---~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk  294 (398)
T KOG0771|consen  218 ---AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK  294 (398)
T ss_pred             ---chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc
Confidence               2222211  111223344444442111  22 2222345566666543221   1   1112345899999999999


Q ss_pred             eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      +++.|+.||.|.+++...        .+........|...|+.+.|+||.+++++-+.|....+..+.-
T Consensus       295 f~AlGT~dGsVai~~~~~--------lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  295 FLALGTMDGSVAIYDAKS--------LQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEEeccCCcEEEEEece--------eeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999999999999987        3444445568999999999999999999999999888887665

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=4.7e-18  Score=129.05  Aligned_cols=230  Identities=16%  Similarity=0.152  Sum_probs=162.5

Q ss_pred             CeeeEEeccCCCEEEEecCCCcEEEEeCCC---------C-ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621           85 PVAPLATTADGSYLFTGGLSGNVYAISVPK---------G-DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  154 (387)
                      .|..-+++|.+++|++|..+|.|.++.+.+         + ..+...++|.++++.++|.  ..+|++++. |.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence            466678999999999999999999998843         1 2344567999999999997  346666654 99999987


Q ss_pred             CcccccCC-CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCC
Q 035621          155 FQLVDEHT-DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDP  232 (387)
Q Consensus       155 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~  232 (387)
                      ++..+... ....+...+.+.-...-..|+++...|..  +-++.++.|+.++-||+++|+..+.++ |...+.++.-..
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~  166 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN  166 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence            55433110 00001111111111122467888888876  455556689999999999999999998 778899999877


Q ss_pred             CCCeEEEEccCCcEEEEeccccccccccccceeEeeccccc-ccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEe
Q 035621          233 TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHD-GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVL  311 (387)
Q Consensus       233 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (387)
                      ....+++|+.||++++||.+++..........-...+..|- ..|.+++.+  ..+|++|+. ..+.+|++.+.++...+
T Consensus       167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse~t~vf  243 (325)
T KOG0649|consen  167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSESTCVF  243 (325)
T ss_pred             cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCCceEEE
Confidence            77899999999999999999976655443333333333443 457777764  458888754 47999999999999888


Q ss_pred             ecccCCCceeEEE
Q 035621          312 KNELAGSISEMVI  324 (387)
Q Consensus       312 ~~~~~~~v~~~~~  324 (387)
                      .-.  +++..+.|
T Consensus       244 pip--a~v~~v~F  254 (325)
T KOG0649|consen  244 PIP--ARVHLVDF  254 (325)
T ss_pred             ecc--cceeEeee
Confidence            643  34544433

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=2.9e-19  Score=150.91  Aligned_cols=241  Identities=17%  Similarity=0.217  Sum_probs=174.7

Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC--------CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK--------GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP  153 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  153 (387)
                      |-..+..+.|.|....|++++.||.|.+|++..        -+++.+|.+|.++|.|+++.+++..+++|+.||+|+.|+
T Consensus       293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~  372 (577)
T KOG0642|consen  293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN  372 (577)
T ss_pred             chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence            446688899999999999999999999999932        256788999999999999999999999999999999998


Q ss_pred             CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceeEEEe
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT---FPCAIMGLAL  230 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~  230 (387)
                      +...  ...............+.+|.+.++.++++...  ..|++++.||+++.|+.....+ .+|.   ......++.+
T Consensus       373 ~p~n--~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~  447 (577)
T KOG0642|consen  373 LPPN--QDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR  447 (577)
T ss_pred             cCCC--CCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence            8522  11112222334556788999999999999886  7799999999999999877766 3333   2345566666


Q ss_pred             CCCC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEE
Q 035621          231 DPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVM  309 (387)
Q Consensus       231 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  309 (387)
                      -... .+.++...-+.-.+++.................  ......+..+.+.|.+.+.+++..|+.|+++|..+++++.
T Consensus       448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~--~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~  525 (577)
T KOG0642|consen  448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG--PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH  525 (577)
T ss_pred             ccchhHhhhhhcccccccchhhhhhhheeeccccCCCc--ccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence            5443 233333333333344444322222111111000  0122457788899999999999999999999999999999


Q ss_pred             EeecccCCCceeEEEEecCCC
Q 035621          310 VLKNELAGSISEMVIATGIGG  330 (387)
Q Consensus       310 ~~~~~~~~~v~~~~~~~~~~~  330 (387)
                      ....|.. .++++++.+...-
T Consensus       526 s~~a~~~-svtslai~~ng~~  545 (577)
T KOG0642|consen  526 SMVAHKD-SVTSLAIDPNGPY  545 (577)
T ss_pred             heeeccc-eecceeecCCCce
Confidence            9988865 8999988776543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.82  E-value=1.6e-18  Score=134.73  Aligned_cols=227  Identities=17%  Similarity=0.137  Sum_probs=165.7

Q ss_pred             CCCeEEEEEccCCCcc---cccC-CCCCeeeEEeccC-CCEEEEecCC-------CcEEEEeCCCC---------ceeEE
Q 035621           62 GSGSVHLYNLWSSTPL---HNIP-VPEPVAPLATTAD-GSYLFTGGLS-------GNVYAISVPKG---------DILRS  120 (387)
Q Consensus        62 ~d~~v~vw~~~~~~~~---~~~~-~~~~v~~~~~~~~-~~~l~~~~~d-------g~i~i~d~~~~---------~~~~~  120 (387)
                      .|+.|.+.+++...-.   ..+. +.+.|..++-+|- ...|+++..+       ..+.||.++..         +++..
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            5688888887654322   2233 5588999999994 4555555432       24789988543         23333


Q ss_pred             cc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEE
Q 035621          121 FS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISC  199 (387)
Q Consensus       121 ~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~  199 (387)
                      +. .+-+.|.|+.|.|++..+++-. |..|.+|++.......      .......-..+....++-+|+|..+++.+++.
T Consensus       118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~v------aev~ss~s~e~~~~ftsg~WspHHdgnqv~tt  190 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIV------AEVLSSESAEMRHSFTSGAWSPHHDGNQVATT  190 (370)
T ss_pred             CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchh------eeecccccccccceecccccCCCCccceEEEe
Confidence            43 3456899999999999888776 7899999994321100      00011111235667888899998878888776


Q ss_pred             eCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCC-eEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621          200 SMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV  276 (387)
Q Consensus       200 ~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  276 (387)
                       .|+++..||+++.++...+.  |...+..+.|+|+.. +|++++.||.|++||.+.        ...++..+.+|...|
T Consensus       191 -~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~--------tk~pv~el~~HsHWv  261 (370)
T KOG1007|consen  191 -SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK--------TKFPVQELPGHSHWV  261 (370)
T ss_pred             -CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC--------CCccccccCCCceEE
Confidence             48999999999998888887  778899999999875 467788899999999997        445555667899999


Q ss_pred             EEEEEecC-CCEEEEEeCCCcEEEEECCC
Q 035621          277 VSVMMMNE-GKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       277 ~~~~~s~~-~~~l~s~~~dg~i~iwd~~~  304 (387)
                      +++.|+|. .++|++|+.|..|.+|...+
T Consensus       262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  262 WAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             EEEEecCccceEEEecCCCceeEEEeccc
Confidence            99999985 46788999999999997644

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.81  E-value=3.7e-16  Score=134.54  Aligned_cols=287  Identities=12%  Similarity=0.135  Sum_probs=180.4

Q ss_pred             cEE-EeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCee
Q 035621            9 EVI-LTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVA   87 (387)
Q Consensus         9 ~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~   87 (387)
                      +++ ++-..+|.|.|.|..+.+.+.++.........+.++|++.+...    ++.||.|.++|+.+.+.+.+++......
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv----~~rdg~vsviD~~~~~~v~~i~~G~~~~   81 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYV----ANRDGTVSVIDLATGKVVATIKVGGNPR   81 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEE----EETTSEEEEEETTSSSEEEEEE-SSEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEE----EcCCCeEEEEECCcccEEEEEecCCCcc
Confidence            344 45667899999999999999999866554455788996644332    5679999999999999999999888899


Q ss_pred             eEEeccCCCEEEEec-CCCcEEEEeCCCCceeEEccCC-------CCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCccc
Q 035621           88 PLATTADGSYLFTGG-LSGNVYAISVPKGDILRSFSAH-------DKPVSCLKISPDGSLLISGGD-DGVIATVPIFQLV  158 (387)
Q Consensus        88 ~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~  158 (387)
                      .+++++||++++++. ..+.+.++|.++.+.++.+...       ...+..+..+|....++..-. .+.|.+.|.... 
T Consensus        82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-  160 (369)
T PF02239_consen   82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-  160 (369)
T ss_dssp             EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-
T ss_pred             eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-
Confidence            999999999998775 6789999999999998877532       346778888888875555544 578888787331 


Q ss_pred             ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEE-EeCCCcEEEEeCCCCcE----------------------
Q 035621          159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS-CSMDCTCKFWRLLNGTH----------------------  215 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~----------------------  215 (387)
                                ..................|.|++  ++++. ...+..|.++|..+++.                      
T Consensus       161 ----------~~~~~~~i~~g~~~~D~~~dpdg--ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~  228 (369)
T PF02239_consen  161 ----------KNLKVTTIKVGRFPHDGGFDPDG--RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG  228 (369)
T ss_dssp             ----------SCEEEEEEE--TTEEEEEE-TTS--SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT
T ss_pred             ----------cccceeeecccccccccccCccc--ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC
Confidence                      11111222233344556666653  54443 33455666666655443                      


Q ss_pred             ---------------------------------EEEEecCCceeEEEeCCCCCeEEEE----ccCCcEEEEecccccccc
Q 035621          216 ---------------------------------LSTVTFPCAIMGLALDPTETDFFAA----GSDGLIYKGLLKYQSRQQ  258 (387)
Q Consensus       216 ---------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~  258 (387)
                                                       ++++...+...-+..+|+++++++.    ...+.|.++|.++.    
T Consensus       229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl----  304 (369)
T PF02239_consen  229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL----  304 (369)
T ss_dssp             TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT----
T ss_pred             cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCc----
Confidence                                             3333322233557779999999998    44689999999883    


Q ss_pred             ccccceeEeecccccccEEEEEEecCCCEEEEEeC--CCcEEEEECCCccEEEEeecccCCCceeEE
Q 035621          259 MHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE--DGSVYIWEIEKRQVVMVLKNELAGSISEMV  323 (387)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  323 (387)
                          .....+.......+..+.|+++|+.+..+..  ++.|.+||..+.+++..++.   ..+++..
T Consensus       305 ----~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~---~tP~G~f  364 (369)
T PF02239_consen  305 ----KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPV---PTPTGKF  364 (369)
T ss_dssp             ----EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE-----SEEEEE
T ss_pred             ----ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEe---eCCCeEe
Confidence                2222222223335899999999997665443  34699999999999999982   2455543

...

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=9.7e-19  Score=147.02  Aligned_cols=207  Identities=15%  Similarity=0.161  Sum_probs=166.8

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-CCCCCee
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI-PVPEPVA   87 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~-~~~~~v~   87 (387)
                      ..|+.++.||.+.|.+ +.++.......|.+.+.+-.|+|++    ..+++++.||.|++|.- +|-...++ +...+|+
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG----tgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~  149 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG----AGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIR  149 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC----ceeeeecCCceEEEEec-cchHHHHHhhcCceeE
Confidence            5788889999999998 5788888999999999999999954    45566999999999984 45444333 4667899


Q ss_pred             eEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621           88 PLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP  167 (387)
Q Consensus        88 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  167 (387)
                      |++|.|+.+.++.+. .+.+.+=-+.....+-.+++|.+-|.++.|++..+++++|++|-..++||-             
T Consensus       150 c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-------------  215 (737)
T KOG1524|consen  150 CARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-------------  215 (737)
T ss_pred             EEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-------------
Confidence            999999877666553 456777777766677788999999999999999999999999999999997             


Q ss_pred             CccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEE
Q 035621          168 DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY  247 (387)
Q Consensus       168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  247 (387)
                      .+..+..-..|..+|++++|.|+   ..++.++. .++++=.          ...+.|..++|++||..+++|+..|.+.
T Consensus       216 ~G~~Lf~S~~~ey~ITSva~npd---~~~~v~S~-nt~R~~~----------p~~GSifnlsWS~DGTQ~a~gt~~G~v~  281 (737)
T KOG1524|consen  216 QGANLFTSAAEEYAITSVAFNPE---KDYLLWSY-NTARFSS----------PRVGSIFNLSWSADGTQATCGTSTGQLI  281 (737)
T ss_pred             cCcccccCChhccceeeeeeccc---cceeeeee-eeeeecC----------CCccceEEEEEcCCCceeeccccCceEE
Confidence            56677788899999999999998   45555553 3344111          1346788999999999999999998876


Q ss_pred             EE
Q 035621          248 KG  249 (387)
Q Consensus       248 i~  249 (387)
                      +-
T Consensus       282 ~A  283 (737)
T KOG1524|consen  282 VA  283 (737)
T ss_pred             Ee
Confidence            53

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.3e-18  Score=138.37  Aligned_cols=200  Identities=15%  Similarity=0.213  Sum_probs=154.9

Q ss_pred             CEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceE
Q 035621           96 SYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP--DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQ  173 (387)
Q Consensus        96 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  173 (387)
                      ..+|++..+|.|++||..+++.+..++++...++.+.|..  ....+.+++.||+|++||+|..          ......
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~----------~e~a~~  110 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ----------AESARI  110 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecc----------hhhhhe
Confidence            5688888999999999999999999999999999999977  4568999999999999999652          333444


Q ss_pred             eeeccC-CCeEEEEEeeCCCCceEEEEeC----CCcEEEEeCCCCcE-EEEEe--cCCceeEEEeCCCC-CeEEEEccCC
Q 035621          174 KFVAHN-DSVTAITCCIGSFNSIIISCSM----DCTCKFWRLLNGTH-LSTVT--FPCAIMGLALDPTE-TDFFAAGSDG  244 (387)
Q Consensus       174 ~~~~~~-~~i~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~-~~~~~--~~~~v~~~~~~~~~-~~l~~~~~dg  244 (387)
                      .+..+. .+..+++.  +..++++++|..    +-.+.+||++..+. +..+.  |...|+++.|+|.. ++|++|+.||
T Consensus       111 ~~~~~~~~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG  188 (376)
T KOG1188|consen  111 SWTQQSGTPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG  188 (376)
T ss_pred             eccCCCCCcceEeec--cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc
Confidence            455555 34445443  223477777754    56799999998876 66654  88999999999976 7888999999


Q ss_pred             cEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621          245 LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       245 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      .|.+||++....     ...+.... .|...|..+.|..++ +.|.+-+..++..+|+++.+.....+..
T Consensus       189 LvnlfD~~~d~E-----eDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~  252 (376)
T KOG1188|consen  189 LVNLFDTKKDNE-----EDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN  252 (376)
T ss_pred             eEEeeecCCCcc-----hhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence            999999987521     12222222 477889999998776 4688888899999999999887666543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=2e-16  Score=124.95  Aligned_cols=234  Identities=13%  Similarity=0.162  Sum_probs=167.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCC--ceeEEEcCccceeeeccccCCC-----CCeEEEEEccCC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSP--RRGLTFAGKPFIAASHISPTTG-----SGSVHLYNLWSS   74 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~-----d~~v~vw~~~~~   74 (387)
                      ++|+.|..-++.|..+| .+||+.+.-+...+.+.+.+.  +..+-|-.+...+.    -|+.     -+.|.|||=...
T Consensus        11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLV----GGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen   11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALV----GGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             EEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEe----cCCCCCCCCCceEEEEecccC
Confidence            47888888999988766 899998754432222222222  22232322211111    1222     357999997778


Q ss_pred             CcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC-CCceeEEccCC--CCCeEEEEEcCCCCEEEEEe-CCCcEE
Q 035621           75 TPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP-KGDILRSFSAH--DKPVSCLKISPDGSLLISGG-DDGVIA  150 (387)
Q Consensus        75 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~-~dg~i~  150 (387)
                      +++.++....+|.++.+.++  .|++. ..+.|.+|... +.+.++.+..-  ...+.++.-+.+..+|+.-+ .-|.|+
T Consensus        86 ~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ  162 (346)
T KOG2111|consen   86 RCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ  162 (346)
T ss_pred             cEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence            88889999999999999886  45555 46789999987 45666655422  23344444333444555443 569999


Q ss_pred             EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCc-EEEEeCCCCcEEEEEe---cCCcee
Q 035621          151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT-CKFWRLLNGTHLSTVT---FPCAIM  226 (387)
Q Consensus       151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~---~~~~v~  226 (387)
                      +-|+...          .......+.+|...|.+++...++  .++||+|..|+ |||||..+|..+.++.   .+..|.
T Consensus       163 i~dL~~~----------~~~~p~~I~AH~s~Iacv~Ln~~G--t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  163 IVDLAST----------KPNAPSIINAHDSDIACVALNLQG--TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             EEEhhhc----------CcCCceEEEcccCceeEEEEcCCc--cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence            9999432          111457788999999999998774  99999999997 7999999999999997   457899


Q ss_pred             EEEeCCCCCeEEEEccCCcEEEEeccccc
Q 035621          227 GLALDPTETDFFAAGSDGLIYKGLLKYQS  255 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  255 (387)
                      +++|+|+..+|++++..|+++++.++...
T Consensus       231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            99999999999999999999999998743

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.81  E-value=5.1e-18  Score=137.88  Aligned_cols=247  Identities=13%  Similarity=0.112  Sum_probs=176.0

Q ss_pred             cccCCCc-EEEeeCCCCcEEEEeCCCCc---------eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc
Q 035621            3 HHLPCNE-VILTSSPEGPITAYNPSSGA---------ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW   72 (387)
Q Consensus         3 ~~s~~~~-~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~   72 (387)
                      .|.++.. .|++|+.|..|+||-+..++         .+..+..|...|+++.|+|++.++++    |+.+|.+.+|...
T Consensus        20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLAS----g~D~g~v~lWk~~   95 (434)
T KOG1009|consen   20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLAS----GGDGGEVFLWKQG   95 (434)
T ss_pred             EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeee----cCCCceEEEEEec
Confidence            4566654 99999999999999876432         34567889999999999996655554    9999999999876


Q ss_pred             CC------Cc----------cccc-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC
Q 035621           73 SS------TP----------LHNI-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP  135 (387)
Q Consensus        73 ~~------~~----------~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  135 (387)
                      .-      .+          .+.. .|.+.+..++|+|++.++++++.|..+++||+..|+....+..|...+..++|.|
T Consensus        96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp  175 (434)
T KOG1009|consen   96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDP  175 (434)
T ss_pred             CcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecch
Confidence            11      00          0111 1667899999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCccccc--------CCCCC-------------------------C----------------
Q 035621          136 DGSLLISGGDDGVIATVPIFQLVDE--------HTDDK-------------------------N----------------  166 (387)
Q Consensus       136 ~~~~l~~~~~dg~i~iwd~~~~~~~--------~~~~~-------------------------~----------------  166 (387)
                      -++++++-+.|...+.+.+......        .....                         .                
T Consensus       176 l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g  255 (434)
T KOG1009|consen  176 LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVG  255 (434)
T ss_pred             hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeC
Confidence            9999998888875555443210000        00000                         0                


Q ss_pred             --------------CCccceEeeeccCCCeEEEEEeeCC----------------CCceEEEEeCCCcEEEEeCCCCcEE
Q 035621          167 --------------PDDLMLQKFVAHNDSVTAITCCIGS----------------FNSIIISCSMDCTCKFWRLLNGTHL  216 (387)
Q Consensus       167 --------------~~~~~~~~~~~~~~~i~~~~~~~~~----------------~~~~l~s~~~d~~i~iwd~~~~~~~  216 (387)
                                    ....+...+.....+...+.++|-.                .+..++.++ ...+.+||.++..++
T Consensus       256 ~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~  334 (434)
T KOG1009|consen  256 GGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPL  334 (434)
T ss_pred             CceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccce
Confidence                          0011111222222333333333210                012344444 457999999998888


Q ss_pred             EEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621          217 STVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       217 ~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  254 (387)
                      ....  |-..++.++|+++|..++..+.||...+..+...
T Consensus       335 ~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  335 AVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             EEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence            7776  6789999999999999999999999888777653

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.81  E-value=4.4e-19  Score=156.36  Aligned_cols=274  Identities=15%  Similarity=0.215  Sum_probs=207.7

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-   81 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-   81 (387)
                      .|...|.++++|+.|..++||...++.++....||.+.|+.++.+.+..+    +++++.|..|++|.+.++.++..+. 
T Consensus       197 ~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~----iaaaS~D~vIrvWrl~~~~pvsvLrg  272 (1113)
T KOG0644|consen  197 IFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTM----IAAASNDKVIRVWRLPDGAPVSVLRG  272 (1113)
T ss_pred             eeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhh----hhhcccCceEEEEecCCCchHHHHhc
Confidence            46778999999999999999999999999999999999999999985444    4459999999999999999998776 


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE---cc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS---FS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL  157 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  157 (387)
                      |.+.|++++|+|-.    +.+.||++++||.+-.-.+..   .+ ....-+.++.|..++..+++++.|+.-..|.+...
T Consensus       273 htgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l  348 (1113)
T KOG0644|consen  273 HTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL  348 (1113)
T ss_pred             cccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHh
Confidence            77899999999954    677899999999871111111   01 12345677888888889999999999888866221


Q ss_pred             cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCe
Q 035621          158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETD  236 (387)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~  236 (387)
                                        ..+...+.-+..+.+. ..+.+++-.+..+.+|++.+|...+... +...+..+.++|-+..
T Consensus       349 ------------------~~~~~~lif~t~ssd~-~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r  409 (1113)
T KOG0644|consen  349 ------------------AWRSNLLIFVTRSSDL-SSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR  409 (1113)
T ss_pred             ------------------hhhccceEEEeccccc-cccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence                              1111111112222121 2466777778889999999998887776 6778999999997755


Q ss_pred             E-EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          237 F-FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       237 l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      + ..++.||...|||+-.+.        +......+| ..+...+||+||..++....-|.++|.....++.....+
T Consensus       410 i~msag~dgst~iwdi~eg~--------pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak  477 (1113)
T KOG0644|consen  410 IAMSAGYDGSTIIWDIWEGI--------PIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAK  477 (1113)
T ss_pred             hhhhccCCCceEeeecccCC--------cceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCccccccc
Confidence            4 567889999999998743        333333344 456677999999999999888999999887776654443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.81  E-value=7.9e-18  Score=132.80  Aligned_cols=214  Identities=14%  Similarity=0.073  Sum_probs=172.2

Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc---eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD---ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                      ..++|+|.+|++|...+|++..+..|.||.....+   ..++++.|...|+.+.|+|..+.|++++.|..-++|..... 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~-   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG-   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC-
Confidence            35789999999999999999999999999986654   67889999999999999999999999999999999977321 


Q ss_pred             ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE-----EEEecCCceeEEEeCCC
Q 035621          159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL-----STVTFPCAIMGLALDPT  233 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~  233 (387)
                              ...++...+..++...+++.|+|..  +.|++|+.-..|.||-++...--     ...+..+.|++++|+|+
T Consensus        88 --------~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn  157 (361)
T KOG1523|consen   88 --------GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN  157 (361)
T ss_pred             --------CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence                    4556677778899999999999996  89999999999999987654332     12235688999999999


Q ss_pred             CCeEEEEccCCcEEEEeccccccccc---------cccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          234 ETDFFAAGSDGLIYKGLLKYQSRQQM---------HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       234 ~~~l~~~~~dg~i~i~d~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      +-.+++|+.|+..+++..--......         .+...+........+.+..+.|+|+|..|+-.+.|..+.+=|...
T Consensus       158 nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  158 NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            99999999999999987532211111         111111122224567899999999999999999999999999877


Q ss_pred             cc
Q 035621          305 RQ  306 (387)
Q Consensus       305 ~~  306 (387)
                      ..
T Consensus       238 p~  239 (361)
T KOG1523|consen  238 PS  239 (361)
T ss_pred             Cc
Confidence            64

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=1.4e-17  Score=148.06  Aligned_cols=234  Identities=15%  Similarity=0.135  Sum_probs=159.3

Q ss_pred             CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCCCce--eEEccCCCCCeEEEEEcCC
Q 035621           62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPKGDI--LRSFSAHDKPVSCLKISPD  136 (387)
Q Consensus        62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~  136 (387)
                      .+..|.+||...........+...+...+|+|||+.|+..+.+   ..|++||+.+++.  +..+.+|   ...++|+||
T Consensus       182 ~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD  258 (429)
T PRK01742        182 QPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD  258 (429)
T ss_pred             ceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence            3579999998666544434466789999999999999887643   3699999988754  3333333   446899999


Q ss_pred             CCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE-EEeCCCcEEEEeCCCC-
Q 035621          137 GSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII-SCSMDCTCKFWRLLNG-  213 (387)
Q Consensus       137 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~-  213 (387)
                      |+.|+.++ .+|.+.+|.+.-           .......+..+...+....|+|++  +.|+ ++..++...||++... 
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~-----------~~~~~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~g~~~I~~~~~~~  325 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGA-----------NGGTPSQLTSGAGNNTEPSWSPDG--QSILFTSDRSGSPQVYRMSASG  325 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEEC-----------CCCCeEeeccCCCCcCCEEECCCC--CEEEEEECCCCCceEEEEECCC
Confidence            99888765 688766664310           112344555666778889999985  6555 4445788888876532 


Q ss_pred             cEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC
Q 035621          214 THLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE  293 (387)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  293 (387)
                      .....+.+..  ....|+|+|+.++..+.++ +.+||+.++....         +...+  ....+.|+|+|++|+.++.
T Consensus       326 ~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~---------lt~~~--~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        326 GGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV---------LSSTF--LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             CCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE---------ecCCC--CCCCceECCCCCEEEEEEc
Confidence            2223333332  4578999999998887754 6668987643211         11111  2246789999999999999


Q ss_pred             CCcEEEEEC--CCccEEEEeecccCCCceeEEEEe
Q 035621          294 DGSVYIWEI--EKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       294 dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      +|.+.+|.+  .+|+.+..+..+ .+.+...+|++
T Consensus       392 ~g~~~~l~~~~~~G~~~~~l~~~-~g~~~~p~wsp  425 (429)
T PRK01742        392 QGLGKVLQLVSADGRFKARLPGS-DGQVKFPAWSP  425 (429)
T ss_pred             CCCceEEEEEECCCCceEEccCC-CCCCCCcccCC
Confidence            998888876  357888888755 45666666654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=4e-17  Score=132.40  Aligned_cols=248  Identities=11%  Similarity=0.120  Sum_probs=182.9

Q ss_pred             eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC------CCcccccC--CCCCeeeEEeccCCCEEEEecCC
Q 035621           33 HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS------STPLHNIP--VPEPVAPLATTADGSYLFTGGLS  104 (387)
Q Consensus        33 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~------~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d  104 (387)
                      .+.+|.+.|+++.|+.+..+++    +|+.|..+++|+++.      .+++....  |...|.|++|...+..+++|+.+
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~----SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~  126 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLA----SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW  126 (609)
T ss_pred             hhhhhccccceeeeccCCeEEe----ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence            3467999999999999655544    599999999999853      35555554  44789999999999999999999


Q ss_pred             CcEEEEeCCCCceeEEccC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621          105 GNVYAISVPKGDILRSFSA--HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV  182 (387)
Q Consensus       105 g~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  182 (387)
                      ++|...|+++.+.+..+..  ..+.|..+..+|..+.|++.+.++.|.+||.+...         ...............
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~---------~~~~~~~~AN~~~~F  197 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ---------NPISLVLPANSGKNF  197 (609)
T ss_pred             ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC---------CCCceeeecCCCccc
Confidence            9999999999988877752  34589999999999999999999999999996531         111222222334456


Q ss_pred             EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-EEEEe----c---CCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621          183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-LSTVT----F---PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~----~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  254 (387)
                      ..+.|+|.. ..+|++.+..+-+.+||.+..+. +....    .   .....++.|+|.|..+++--....-.+||+...
T Consensus       198 ~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~  276 (609)
T KOG4227|consen  198 YTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ  276 (609)
T ss_pred             eeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc
Confidence            678888875 58899999999999999986432 11111    1   223467899999999988777667777787652


Q ss_pred             ccccccccceeEeecccc-------cccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          255 SRQQMHKGQELVTLANRH-------DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      ...       +  +...|       ...+.+++|..| ..+++|+.+-.|++|.+..
T Consensus       277 R~~-------V--~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~  323 (609)
T KOG4227|consen  277 RCF-------V--LKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPR  323 (609)
T ss_pred             cce-------e--EeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCC
Confidence            211       1  11122       234777888765 4599999999999998753

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.80  E-value=2.3e-16  Score=126.98  Aligned_cols=222  Identities=19%  Similarity=0.270  Sum_probs=168.2

Q ss_pred             EEEeeCCC--CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC----C
Q 035621           10 VILTSSPE--GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV----P   83 (387)
Q Consensus        10 ~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~----~   83 (387)
                      ++|..+.+  +.+++++.+.+..+..+. ...+|.++.++.++.+..       -...|.|||+.+.+.++++..    +
T Consensus        58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~RLvV~-------Lee~IyIydI~~MklLhTI~t~~~n~  129 (391)
T KOG2110|consen   58 LVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRKRLVVC-------LEESIYIYDIKDMKLLHTIETTPPNP  129 (391)
T ss_pred             eeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccceEEEE-------EcccEEEEecccceeehhhhccCCCc
Confidence            44444333  458999998888888776 566799999998776653       245599999999999988873    2


Q ss_pred             CCeeeEEeccCCCEEEEec--CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEeCCccccc
Q 035621           84 EPVAPLATTADGSYLFTGG--LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGV-IATVPIFQLVDE  160 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~  160 (387)
                      ..+.++++++.+.+++.-+  ..|.|.+||..+-+.+..+..|++++-+++|+++|.+|++++..|+ ||++.+      
T Consensus       130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v------  203 (391)
T KOG2110|consen  130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSV------  203 (391)
T ss_pred             cceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEc------
Confidence            3466666666777888643  4689999999999999999999999999999999999999999997 689998      


Q ss_pred             CCCCCCCCccceEeeeccC--CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-----------------------
Q 035621          161 HTDDKNPDDLMLQKFVAHN--DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-----------------------  215 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------------------  215 (387)
                            +.+..+.+|....  ..|.+++|+|+.  ++|++.+..++|++|.+.+...                       
T Consensus       204 ------~~G~kl~eFRRG~~~~~IySL~Fs~ds--~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sy  275 (391)
T KOG2110|consen  204 ------PEGQKLYEFRRGTYPVSIYSLSFSPDS--QFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSY  275 (391)
T ss_pred             ------CCccEeeeeeCCceeeEEEEEEECCCC--CeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhh
Confidence                  6777777776543  357789999886  8999999999999998864210                       


Q ss_pred             --------------EEEEe--cCCceeEEEeC--CCCCeEEEEccCCcEEEEeccc
Q 035621          216 --------------LSTVT--FPCAIMGLALD--PTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       216 --------------~~~~~--~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                                    ....+  ....-..+.+.  +...++.+++.||.++.|.+..
T Consensus       276 lps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  276 LPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             cchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence                          00011  11111223333  4678899999999999998876

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=2.1e-18  Score=143.34  Aligned_cols=294  Identities=15%  Similarity=0.199  Sum_probs=215.7

Q ss_pred             eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--CCCCeeeEEeccC--CCEEEEecCCCc
Q 035621           31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPVAPLATTAD--GSYLFTGGLSGN  106 (387)
Q Consensus        31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~~~~~dg~  106 (387)
                      ...|..|.+.|+.+.|+..    +..+++++.|..|.+||+..++....+.  |...|....|-|.  ...+++++.||.
T Consensus       135 ~~kL~~H~GcVntV~FN~~----Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQR----GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             hhcccCCCCccceeeeccc----CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            4567789999999999994    4455569999999999999998887776  5567777778773  467899999999


Q ss_pred             EEEEeCCCC-ce--eEEccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC--
Q 035621          107 VYAISVPKG-DI--LRSFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND--  180 (387)
Q Consensus       107 i~i~d~~~~-~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--  180 (387)
                      +++=.+... .+  ...+..|.++|..++.-|+. ..|.+++.|+.+.-+|++.....        .... .-..+..  
T Consensus       211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa--------~~~~-cr~~~~~~~  281 (559)
T KOG1334|consen  211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA--------EKFV-CREADEKER  281 (559)
T ss_pred             eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcc--------ceee-eeccCCccc
Confidence            998876433 22  34456799999999999954 47899999999999998653221        1111 1222222  


Q ss_pred             -CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE------EEEEe-------cCCceeEEEeCCCCCeEEEEccCCcE
Q 035621          181 -SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH------LSTVT-------FPCAIMGLALDPTETDFFAAGSDGLI  246 (387)
Q Consensus       181 -~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i  246 (387)
                       ....++..|.. ...+++++.|..+++||.+.-..      +..+.       .+..|++++|+.++.-|.++-.|-.|
T Consensus       282 v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I  360 (559)
T KOG1334|consen  282 VGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI  360 (559)
T ss_pred             eeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence             45678887774 56899999999999999875332      22221       34579999999999999999999999


Q ss_pred             EEEecccccccccc----ccceeEeecccccc--cEEEEEE-ecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCc
Q 035621          247 YKGLLKYQSRQQMH----KGQELVTLANRHDG--VVVSVMM-MNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSI  319 (387)
Q Consensus       247 ~i~d~~~~~~~~~~----~~~~~~~~~~~~~~--~v~~~~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  319 (387)
                      +++.-..+......    ........+++|..  .|..+-| -|...|+++|+.=|.|.||+-.+++.++.+.+... .|
T Consensus       361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VV  439 (559)
T KOG1334|consen  361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VV  439 (559)
T ss_pred             EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eE
Confidence            99955443321111    11223333567765  4777765 58889999999999999999999999998887755 77


Q ss_pred             eeE--------EEEecCCCceeeEEEec
Q 035621          320 SEM--------VIATGIGGSRGCGVVKT  339 (387)
Q Consensus       320 ~~~--------~~~~~~~~~~~~~~~~~  339 (387)
                      +||        +-++|.+..+++|...+
T Consensus       440 NCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  440 NCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             eccCCCCCCchhhccCCccceeeecCCc
Confidence            776        55667777788887643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=1.4e-16  Score=137.45  Aligned_cols=233  Identities=13%  Similarity=0.191  Sum_probs=153.9

Q ss_pred             CCCCCeEEEEEccC-CC--cccccCCCCCeeeEEeccCCCEEEEec-CCCcEEEEeCC-CCce--eEEccCCCCCeEEEE
Q 035621           60 TTGSGSVHLYNLWS-ST--PLHNIPVPEPVAPLATTADGSYLFTGG-LSGNVYAISVP-KGDI--LRSFSAHDKPVSCLK  132 (387)
Q Consensus        60 ~~~d~~v~vw~~~~-~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~--~~~~~~~~~~v~~~~  132 (387)
                      ...++.|.+|++.+ ++  .+..+...+....++++|++++|++++ .++.|.+|++. +++.  +.... ..+....++
T Consensus         8 ~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~   86 (330)
T PRK11028          8 SPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS   86 (330)
T ss_pred             cCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE
Confidence            46789999999964 32  445555556788899999999987764 57889999986 3432  22222 334567899


Q ss_pred             EcCCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE-EEEeCCCcEEEEeC
Q 035621          133 ISPDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII-ISCSMDCTCKFWRL  210 (387)
Q Consensus       133 ~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~d~~i~iwd~  210 (387)
                      |+|+++++++++. ++.|.+|++....        .....+..+. +......++++|++  +++ ++...++.|.+||+
T Consensus        87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g--------~~~~~~~~~~-~~~~~~~~~~~p~g--~~l~v~~~~~~~v~v~d~  155 (330)
T PRK11028         87 TDHQGRFLFSASYNANCVSVSPLDKDG--------IPVAPIQIIE-GLEGCHSANIDPDN--RTLWVPCLKEDRIRLFTL  155 (330)
T ss_pred             ECCCCCEEEEEEcCCCeEEEEEECCCC--------CCCCceeecc-CCCcccEeEeCCCC--CEEEEeeCCCCEEEEEEE
Confidence            9999998888764 7899999983210        0011122222 22345667788875  555 55556799999999


Q ss_pred             CCCcEEE-------EEecCCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecc--cccccEEEEE
Q 035621          211 LNGTHLS-------TVTFPCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLAN--RHDGVVVSVM  280 (387)
Q Consensus       211 ~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~  280 (387)
                      .+...+.       .......+..++|+|++++++++.. ++.|.+|++........ ....+.....  .+......+.
T Consensus       156 ~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~i~  234 (330)
T PRK11028        156 SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE-CVQTLDMMPADFSDTRWAADIH  234 (330)
T ss_pred             CCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE-EEEEEecCCCcCCCCccceeEE
Confidence            8643221       2223456788999999999988877 89999999974211100 0011110000  1222345689


Q ss_pred             EecCCCEEEEEe-CCCcEEEEECCCc
Q 035621          281 MMNEGKNLVSAA-EDGSVYIWEIEKR  305 (387)
Q Consensus       281 ~s~~~~~l~s~~-~dg~i~iwd~~~~  305 (387)
                      ++|++++++++. .++.|.+|++...
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSVSED  260 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEeCC
Confidence            999999998885 4789999998654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=2.1e-17  Score=146.92  Aligned_cols=240  Identities=13%  Similarity=0.008  Sum_probs=160.4

Q ss_pred             CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCC
Q 035621           17 EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGS   96 (387)
Q Consensus        17 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~   96 (387)
                      +..|++||.. |...+.+..|...+....|+|++...+.. .....+..|.+||+.+++.............++|+|||+
T Consensus       183 ~~~i~i~d~d-g~~~~~lt~~~~~v~~p~wSPDG~~la~~-s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~  260 (429)
T PRK01742        183 PYEVRVADYD-GFNQFIVNRSSQPLMSPAWSPDGSKLAYV-SFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGS  260 (429)
T ss_pred             eEEEEEECCC-CCCceEeccCCCccccceEcCCCCEEEEE-EecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCC
Confidence            4689999975 44456677788889999999976544321 001234579999998876433333344456789999999


Q ss_pred             EEEEec-CCCcEE--EEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccce
Q 035621           97 YLFTGG-LSGNVY--AISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLML  172 (387)
Q Consensus        97 ~l~~~~-~dg~i~--i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~  172 (387)
                      .|+.+. .+|.+.  +||+.+++. ..+..+...+....|+|||+.|+.++ .++...+|++..           .....
T Consensus       261 ~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~-----------~~~~~  328 (429)
T PRK01742        261 RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA-----------SGGGA  328 (429)
T ss_pred             EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC-----------CCCCe
Confidence            888764 577655  456666654 45556677788999999999776554 678888887621           11111


Q ss_pred             EeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecc
Q 035621          173 QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLK  252 (387)
Q Consensus       173 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  252 (387)
                      ..+ .+..  ....|+|++  +.++..+.++ +.+||+.+++...... ........|+|+|++|+.++.++.+.+|.+.
T Consensus       329 ~~l-~~~~--~~~~~SpDG--~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        329 SLV-GGRG--YSAQISADG--KTLVMINGDN-VVKQDLTSGSTEVLSS-TFLDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             EEe-cCCC--CCccCCCCC--CEEEEEcCCC-EEEEECCCCCeEEecC-CCCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            222 2332  346788875  7777777655 6669999887543222 2234567899999999999999988888764


Q ss_pred             ccccccccccceeEeecccccccEEEEEEecC
Q 035621          253 YQSRQQMHKGQELVTLANRHDGVVVSVMMMNE  284 (387)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  284 (387)
                      ...      +... ..+..|.+.+...+|+|-
T Consensus       402 ~~~------G~~~-~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        402 SAD------GRFK-ARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ECC------CCce-EEccCCCCCCCCcccCCC
Confidence            311      2222 223467778888999874

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.79  E-value=4.4e-17  Score=144.20  Aligned_cols=236  Identities=14%  Similarity=0.085  Sum_probs=167.5

Q ss_pred             CCeEEEEEccCC-CcccccCCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCce--eEE----ccCCCCCeEEEEEc
Q 035621           63 SGSVHLYNLWSS-TPLHNIPVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDI--LRS----FSAHDKPVSCLKIS  134 (387)
Q Consensus        63 d~~v~vw~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--~~~----~~~~~~~v~~~~~~  134 (387)
                      ++.+.+|++... .+...+..+..|.++.|+| +.++++.|..+|+|.+||++.+..  ...    ...|..+++.+.|.
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            458999999776 6666777889999999999 567888888999999999987754  222    23688999999997


Q ss_pred             CCC--CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-
Q 035621          135 PDG--SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL-  211 (387)
Q Consensus       135 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-  211 (387)
                      .+.  .-+++++.||.|..|+++....+..............-......++++.|.+.. .+.++.|+.+|.|.--+-. 
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEeccC
Confidence            644  449999999999999986654322111111111001111223467889988764 6789999999998873322 


Q ss_pred             --CCc-----EE-EEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621          212 --NGT-----HL-STVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN  283 (387)
Q Consensus       212 --~~~-----~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  283 (387)
                        ...     .. ....|.++|.++.++|-+..++..+.|-.+++|.-...        ..+...+..+...|++++|||
T Consensus       380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~--------~~Pl~~~~~~~~~v~~vaWSp  451 (555)
T KOG1587|consen  380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI--------ASPLLSLDSSPDYVTDVAWSP  451 (555)
T ss_pred             CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC--------CCcchhhhhccceeeeeEEcC
Confidence              222     11 12237789999999998877777666999999987731        122222335677799999999


Q ss_pred             CCC-EEEEEeCCCcEEEEECCCccE
Q 035621          284 EGK-NLVSAAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       284 ~~~-~l~s~~~dg~i~iwd~~~~~~  307 (387)
                      ... .|+++..||.|.+||+.....
T Consensus       452 trpavF~~~d~~G~l~iWDLl~~~~  476 (555)
T KOG1587|consen  452 TRPAVFATVDGDGNLDIWDLLQDDE  476 (555)
T ss_pred             cCceEEEEEcCCCceehhhhhcccc
Confidence            754 778888999999999876533

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.78  E-value=5.5e-17  Score=148.97  Aligned_cols=281  Identities=16%  Similarity=0.153  Sum_probs=188.8

Q ss_pred             cCCCcEEEeeCCCCcEEEEeCCCC-------ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621            5 LPCNEVILTSSPEGPITAYNPSSG-------AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL   77 (387)
Q Consensus         5 s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~   77 (387)
                      ++++.++++|+.||+|++||...-       +...++..-..++.++...+    ....++.++.||.|++.+++..+..
T Consensus      1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~----~~~~~Av~t~DG~v~~~~id~~~~~ 1133 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG----NGDQFAVSTKDGSVRVLRIDHYNVS 1133 (1431)
T ss_pred             CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc----CCCeEEEEcCCCeEEEEEccccccc
Confidence            456699999999999999998532       22233433456677777777    3344555899999999998762111


Q ss_pred             -------cccC--CCCC-eeeEEecc-CCC-EEEEecCCCcEEEEeCCCCceeEEcc--CCCCCeEEEEEcCCCCEEEEE
Q 035621           78 -------HNIP--VPEP-VAPLATTA-DGS-YLFTGGLSGNVYAISVPKGDILRSFS--AHDKPVSCLKISPDGSLLISG  143 (387)
Q Consensus        78 -------~~~~--~~~~-v~~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~  143 (387)
                             +...  ..+. |..-+|.. .+. .++.+...+.|..||++......+++  ...+.|++++.+|.+++++.|
T Consensus      1134 ~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviG 1213 (1431)
T KOG1240|consen 1134 KRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIG 1213 (1431)
T ss_pred             cceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEe
Confidence                   1111  2233 33444444 233 67788888999999998876655544  235789999999999999999


Q ss_pred             eCCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCC-CceEEEE-e-CCCcEEEEeCCCCcEEEEE
Q 035621          144 GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSF-NSIIISC-S-MDCTCKFWRLLNGTHLSTV  219 (387)
Q Consensus       144 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~l~s~-~-~d~~i~iwd~~~~~~~~~~  219 (387)
                      +..|.+.+||++            -..++..+ .++..+++.+..+|... ....+++ + ..+.|.+|++.+|.+...+
T Consensus      1214 ts~G~l~lWDLR------------F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1214 TSRGQLVLWDLR------------FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred             cCCceEEEEEee------------cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence            999999999994            33344333 24557888888888763 1344444 3 4788999999999776665


Q ss_pred             ecC-----------C---------ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc--------------------
Q 035621          220 TFP-----------C---------AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM--------------------  259 (387)
Q Consensus       220 ~~~-----------~---------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------------  259 (387)
                      -..           .         .....++...+..+.+|+.|+.|+.||.........                    
T Consensus      1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~ 1361 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLST 1361 (1431)
T ss_pred             EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccc
Confidence            421           1         122334444567899999999999999866543300                    


Q ss_pred             ccc-----------------------cee----EeecccccccEEEEEEecC-CCEEEEEeCCCcEEEEE
Q 035621          260 HKG-----------------------QEL----VTLANRHDGVVVSVMMMNE-GKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       260 ~~~-----------------------~~~----~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd  301 (387)
                      ..+                       ..+    ......|..+|+++++... ..+|++++.||.|+||.
T Consensus      1362 i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1362 IPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             cCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence            000                       000    0012357788999988654 35889999999999994

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=5.9e-18  Score=140.67  Aligned_cols=287  Identities=17%  Similarity=0.209  Sum_probs=208.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc----
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP----   76 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~----   76 (387)
                      +.|...|..|++|+.|..|.+||..+++....+ .+|...|..-.|-|..  ...-+++++.||.+++=.+.....    
T Consensus       148 V~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s--~d~ti~~~s~dgqvr~s~i~~t~~~e~t  225 (559)
T KOG1334|consen  148 VHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS--GDRTIVTSSRDGQVRVSEILETGYVENT  225 (559)
T ss_pred             eeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC--CCcCceeccccCceeeeeeccccceecc
Confidence            568889999999999999999999988877666 5788888888888732  223466689999999987744322    


Q ss_pred             ccccCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEEc---cCCCC---CeEEEEEcCCC-CEEEEEeCCCc
Q 035621           77 LHNIPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRSF---SAHDK---PVSCLKISPDG-SLLISGGDDGV  148 (387)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~---~v~~~~~~~~~-~~l~~~~~dg~  148 (387)
                      ....+|.++|..++.-|+. ..|.+++.|+.+.-+|++.+.+...+   +.+..   ....++.+|.. ..+++++.|..
T Consensus       226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf  305 (559)
T KOG1334|consen  226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF  305 (559)
T ss_pred             eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence            2344588999999999964 56889999999999999877543332   23333   57889999954 48999999999


Q ss_pred             EEEEeCCcccccCCCCCCCCccceEeee------ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC--C-------
Q 035621          149 IATVPIFQLVDEHTDDKNPDDLMLQKFV------AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN--G-------  213 (387)
Q Consensus       149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~-------  213 (387)
                      +++||.++......      ...+..+.      ...-.|++++++.++  .-|+++..|-.|+++.-..  |       
T Consensus       306 ~RvYD~R~~~~e~~------n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~--sElLaSYnDe~IYLF~~~~~~G~~p~~~s  377 (559)
T KOG1334|consen  306 ARVYDQRRIDKEEN------NGVLDKFCPHHLVEDDPVNITGLVYSHDG--SELLASYNDEDIYLFNKSMGDGSEPDPSS  377 (559)
T ss_pred             hhhhcccchhhccc------cchhhhcCCccccccCcccceeEEecCCc--cceeeeecccceEEeccccccCCCCCCCc
Confidence            99999976543321      11222222      223468999998665  5566667788899985332  2       


Q ss_pred             ---cEEEE-Ee-c--CCceeEEEe-CCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC
Q 035621          214 ---THLST-VT-F--PCAIMGLAL-DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG  285 (387)
Q Consensus       214 ---~~~~~-~~-~--~~~v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  285 (387)
                         ..... ++ |  ...|..+-| -|...++++|+.-|.|.+|+-.++.         +..++.+...-|+|+.-+|--
T Consensus       378 ~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e---------ii~~MegDr~VVNCLEpHP~~  448 (559)
T KOG1334|consen  378 PREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE---------IIRFMEGDRHVVNCLEPHPHL  448 (559)
T ss_pred             chhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH---------HHHHhhcccceEeccCCCCCC
Confidence               11112 22 2  234666655 5788999999999999999988743         333334555589999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCccE
Q 035621          286 KNLVSAAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       286 ~~l~s~~~dg~i~iwd~~~~~~  307 (387)
                      ..||++|.|..|+||-..+.+.
T Consensus       449 PvLAsSGid~DVKIWTP~~~er  470 (559)
T KOG1334|consen  449 PVLASSGIDHDVKIWTPLTAER  470 (559)
T ss_pred             chhhccCCccceeeecCCcccc
Confidence            9999999999999998755433

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.78  E-value=9.1e-17  Score=127.44  Aligned_cols=306  Identities=12%  Similarity=0.092  Sum_probs=200.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      .+|||+|+++|+.+.- .+.|-|..+-+..+.+.. -..|.-+.|..+...   .+.....++.|.+|++...+-...+.
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~---ilC~~yk~~~vqvwsl~Qpew~ckId   88 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCH---ILCVAYKDPKVQVWSLVQPEWYCKID   88 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeecccee---eeeeeeccceEEEEEeecceeEEEec
Confidence            4799999999999875 788999988877665542 344677778764322   12235789999999998887776666


Q ss_pred             -CCCCeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEE--------E
Q 035621           82 -VPEPVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIA--------T  151 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~--------i  151 (387)
                       .+.++..++|+|||+.++ +...+-.|.+|.+.+.+... ++-.+..+..++|+|||++.+..+.-....        -
T Consensus        89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~  167 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA  167 (447)
T ss_pred             cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence             457899999999996554 55678899999998776543 332345678899999999888776432110        1


Q ss_pred             EeCCcccccCCCC-----CCCCccce---------Eeeecc-CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-
Q 035621          152 VPIFQLVDEHTDD-----KNPDDLML---------QKFVAH-NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-  215 (387)
Q Consensus       152 wd~~~~~~~~~~~-----~~~~~~~~---------~~~~~~-~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-  215 (387)
                      |-+-+........     -.+.+.-+         +.+..| .-.+..+.|+|.+  ++|+.|+.|+.+|+.+--+.+. 
T Consensus       168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~--qflavGsyD~~lrvlnh~tWk~f  245 (447)
T KOG4497|consen  168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCN--QFLAVGSYDQMLRVLNHFTWKPF  245 (447)
T ss_pred             HHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecccc--ceEEeeccchhhhhhceeeeeeh
Confidence            1110000000000     00111111         111122 2568889999975  9999999999998865322111 


Q ss_pred             -----------------------------------------------------------EEEEe-------cCCceeEEE
Q 035621          216 -----------------------------------------------------------LSTVT-------FPCAIMGLA  229 (387)
Q Consensus       216 -----------------------------------------------------------~~~~~-------~~~~v~~~~  229 (387)
                                                                                 +..++       ....+..++
T Consensus       246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la  325 (447)
T KOG4497|consen  246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA  325 (447)
T ss_pred             hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence                                                                       00111       012466799


Q ss_pred             eCCCCCeEEEEcc--CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccE
Q 035621          230 LDPTETDFFAAGS--DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       230 ~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  307 (387)
                      |++|..++++-..  -+.+.+||++...         +...+ ....+|....|+|....|+.+.....+++|.......
T Consensus       326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~---------l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~  395 (447)
T KOG4497|consen  326 FSCDSTYAATRNDKYPNALWLWDLQNLK---------LHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV  395 (447)
T ss_pred             ecCCceEEeeecCCCCceEEEEechhhh---------hhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence            9999999998765  4789999998732         22221 2456899999999988888877777899999887666


Q ss_pred             EEEeecccCCCceeEEEEec
Q 035621          308 VMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       308 ~~~~~~~~~~~v~~~~~~~~  327 (387)
                      +..-..  .+.|..+.+.-.
T Consensus       396 V~vP~~--GF~i~~l~W~~~  413 (447)
T KOG4497|consen  396 VGVPKK--GFNIQKLQWLQP  413 (447)
T ss_pred             EecCCC--CceeeeEEecCC
Confidence            654433  256777655443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.78  E-value=6.2e-17  Score=127.83  Aligned_cols=225  Identities=12%  Similarity=0.105  Sum_probs=168.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCC---ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc-cCCCc-
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSG---AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL-WSSTP-   76 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~-~~~~~-   76 (387)
                      .+|++|+..+|++.....|.||.....   +...+++.|...|+++.|+|    ....+++++.|..-++|.. ..++- 
T Consensus        16 hAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap----~snrIvtcs~drnayVw~~~~~~~Wk   91 (361)
T KOG1523|consen   16 HAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP----KSNRIVTCSHDRNAYVWTQPSGGTWK   91 (361)
T ss_pred             eeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC----CCCceeEccCCCCccccccCCCCeec
Confidence            379999999999999999999987644   46788999999999999999    5667788999999999998 44432 


Q ss_pred             --ccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee----EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 035621           77 --LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL----RSFSAHDKPVSCLKISPDGSLLISGGDDGVIA  150 (387)
Q Consensus        77 --~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  150 (387)
                        +..+.++..++++.|+|.++.+++|+....|.+|-++..+--    +.-+.+...|+++.|+|++-+|++|+.|+..+
T Consensus        92 ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~r  171 (361)
T KOG1523|consen   92 PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCR  171 (361)
T ss_pred             cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCccee
Confidence              234457889999999999999999999999999887654321    22345678899999999999999999999999


Q ss_pred             EEeCCcc-cccC-----CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEEe-cC
Q 035621          151 TVPIFQL-VDEH-----TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTVT-FP  222 (387)
Q Consensus       151 iwd~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~  222 (387)
                      +|...-. .+..     .....+-+..+.++....+.+..+.|+|++  +.|+-.+.|.++.+-|..... ...... ..
T Consensus       172 VfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG--~~lawv~Hds~v~~~da~~p~~~v~~~~~~~  249 (361)
T KOG1523|consen  172 VFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG--NRLAWVGHDSTVSFVDAAGPSERVQSVATAQ  249 (361)
T ss_pred             EEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC--CEeeEecCCCceEEeecCCCchhccchhhcc
Confidence            9976321 1111     111112233444555667889999999985  899999999999999977654 222222 22


Q ss_pred             CceeEEEeCC
Q 035621          223 CAIMGLALDP  232 (387)
Q Consensus       223 ~~v~~~~~~~  232 (387)
                      -+..++.|-.
T Consensus       250 lP~ls~~~is  259 (361)
T KOG1523|consen  250 LPLLSVSWIS  259 (361)
T ss_pred             CCceeeEeec
Confidence            4455555543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.77  E-value=2.4e-17  Score=141.56  Aligned_cols=228  Identities=13%  Similarity=0.111  Sum_probs=165.3

Q ss_pred             CCCCCeEEEEEccCCCcc-----cccCCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCC-------ceeEEccCCCC
Q 035621           60 TTGSGSVHLYNLWSSTPL-----HNIPVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKG-------DILRSFSAHDK  126 (387)
Q Consensus        60 ~~~d~~v~vw~~~~~~~~-----~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~  126 (387)
                      .+..|.|-||++.....+     -.+.....|+.+.|.| |...|++++.||.|++|.+..+       .+...+..|..
T Consensus       599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e  678 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE  678 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence            456789999999654322     2233456799999999 7788999999999999998654       34456778999


Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcE
Q 035621          127 PVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC  205 (387)
Q Consensus       127 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i  205 (387)
                      .|+++.|+| -.+.|++++.|.+|++||+            ........+.+|.+.|..++|+|++  +.+++.+.||+|
T Consensus       679 KI~slRfHPLAadvLa~asyd~Ti~lWDl------------~~~~~~~~l~gHtdqIf~~AWSpdG--r~~AtVcKDg~~  744 (1012)
T KOG1445|consen  679 KITSLRFHPLAADVLAVASYDSTIELWDL------------ANAKLYSRLVGHTDQIFGIAWSPDG--RRIATVCKDGTL  744 (1012)
T ss_pred             eEEEEEecchhhhHhhhhhccceeeeeeh------------hhhhhhheeccCcCceeEEEECCCC--cceeeeecCceE
Confidence            999999999 5568999999999999999            5666777899999999999999995  999999999999


Q ss_pred             EEEeCCCCcE-EEEEe--cCCceeEEEeCCCCCeEEEEccC----CcEEEEeccccccccccccceeEeecccccccEEE
Q 035621          206 KFWRLLNGTH-LSTVT--FPCAIMGLALDPTETDFFAAGSD----GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS  278 (387)
Q Consensus       206 ~iwd~~~~~~-~~~~~--~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  278 (387)
                      ++|+.++++. ++.-+  ....--.+.|..+|+++++.+.|    ..|.+||...-...      .+....-.-...+.-
T Consensus       745 rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~------pl~t~~lDvaps~Lv  818 (1012)
T KOG1445|consen  745 RVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLR------PLYTQVLDVAPSPLV  818 (1012)
T ss_pred             EEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCC------cceeeeecccCcccc
Confidence            9999987653 32222  22344578899999999888765    45777776552210      000000000001111


Q ss_pred             EEEecCCC-EEEEEeCCCcEEEEECCCccE
Q 035621          279 VMMMNEGK-NLVSAAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       279 ~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~  307 (387)
                      -.+.+|.. +|++|-.|..|.+|.+-...+
T Consensus       819 P~YD~Ds~~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  819 PHYDYDSNVLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             ccccCCCceEEEecCCCceEEEEEecCCCc
Confidence            12344544 667888899999999866544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.3e-17  Score=136.42  Aligned_cols=183  Identities=19%  Similarity=0.245  Sum_probs=146.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEE
Q 035621          129 SCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFW  208 (387)
Q Consensus       129 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iw  208 (387)
                      .+++|+++|..+++++.||++|+|+.            +....+.....|...|.++.|+|++  .+|++-+.| ..+||
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~------------Ps~~t~l~e~~~~~eV~DL~FS~dg--k~lasig~d-~~~VW  212 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEW------------PSMLTILEEIAHHAEVKDLDFSPDG--KFLASIGAD-SARVW  212 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEec------------CcchhhhhhHhhcCccccceeCCCC--cEEEEecCC-ceEEE
Confidence            78999999999999999999999998            5666777888999999999999996  899999999 89999


Q ss_pred             eCCCCcEEEEEe---cCCceeEEEeCCCC---CeEE--EEccCCcEEEEeccccccccccccceeEeecccccccEEEEE
Q 035621          209 RLLNGTHLSTVT---FPCAIMGLALDPTE---TDFF--AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVM  280 (387)
Q Consensus       209 d~~~~~~~~~~~---~~~~v~~~~~~~~~---~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  280 (387)
                      +.+++.++....   .+.....+.|+.|+   .+.+  ....-+.|..|++.........+   ..... .....|++++
T Consensus       213 ~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~---~~~~~-~~~~siSsl~  288 (398)
T KOG0771|consen  213 SVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR---LRKKI-KRFKSISSLA  288 (398)
T ss_pred             EeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc---hhhhh-hccCcceeEE
Confidence            999997766654   34456778888776   3332  23446778888877644321111   11111 2345799999


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCC
Q 035621          281 MMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGG  330 (387)
Q Consensus       281 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  330 (387)
                      .+++|++++.|+.||.|-|++..+-+.++.++..|.+.||++.|+|....
T Consensus       289 VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~  338 (398)
T KOG0771|consen  289 VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY  338 (398)
T ss_pred             EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc
Confidence            99999999999999999999999999999999888999999999985543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=6.7e-16  Score=124.05  Aligned_cols=276  Identities=15%  Similarity=0.156  Sum_probs=180.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccC-CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC----C-
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSG-SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS----T-   75 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~----~-   75 (387)
                      ++|++.-.-+|++..|..|++||-.+ .....++. ....|++++|-|.   .++.++.++. +-|.+|.....    . 
T Consensus       104 ~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPl---saselavgCr-~gIciW~~s~tln~~r~  178 (445)
T KOG2139|consen  104 VAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPL---SASELAVGCR-AGICIWSDSRTLNANRN  178 (445)
T ss_pred             EeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccC---Ccceeeeeec-ceeEEEEcCcccccccc
Confidence            67888777789999999999999765 55455543 3456999999994   3444554554 45899976432    1 


Q ss_pred             -------cccccC--CCCCeeeEEeccCCCEEEEecC-CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC
Q 035621           76 -------PLHNIP--VPEPVAPLATTADGSYLFTGGL-SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD  145 (387)
Q Consensus        76 -------~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  145 (387)
                             ..+.++  ...+|+.+.|.+||..+++++. +..|.+||..++..+.......+.++-+.|+||+.+|+.+.-
T Consensus       179 ~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~  258 (445)
T KOG2139|consen  179 IRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC  258 (445)
T ss_pred             cccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc
Confidence                   111222  3368999999999999999874 568999999998877665455678999999999999999999


Q ss_pred             CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC----Cc-------
Q 035621          146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN----GT-------  214 (387)
Q Consensus       146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~-------  214 (387)
                      |+..++|...+.+            .........+.|...+|+|.+ ..+|++++..-  ++|.+.-    ..       
T Consensus       259 davfrlw~e~q~w------------t~erw~lgsgrvqtacWspcG-sfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~  323 (445)
T KOG2139|consen  259 DAVFRLWQENQSW------------TKERWILGSGRVQTACWSPCG-SFLLFACSGSP--RLYSLTFDGEDSVFLRPQSI  323 (445)
T ss_pred             cceeeeehhcccc------------eecceeccCCceeeeeecCCC-CEEEEEEcCCc--eEEEEeecCCCccccCcccc
Confidence            9999999763321            122223344589999999987 34555555443  3443321    00       


Q ss_pred             ----EEEEEe----------cCCceeEEEeCCCCCeEEEEccCC--------cEEEEeccccccccccccceeEeecccc
Q 035621          215 ----HLSTVT----------FPCAIMGLALDPTETDFFAAGSDG--------LIYKGLLKYQSRQQMHKGQELVTLANRH  272 (387)
Q Consensus       215 ----~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~  272 (387)
                          .+..+.          ..+.+.+++|.|.|.+|++.-..+        .|.+||.+........    ......  
T Consensus       324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels----~cg~i~--  397 (445)
T KOG2139|consen  324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELS----YCGMIG--  397 (445)
T ss_pred             eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEE----eccccc--
Confidence                011111          135788999999999999976543        3666776652211110    001111  


Q ss_pred             cccEEEEEEec---CCCEEEEEeCCCcEEEEECC
Q 035621          273 DGVVVSVMMMN---EGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       273 ~~~v~~~~~s~---~~~~l~s~~~dg~i~iwd~~  303 (387)
                      ......++|+|   ++.+|..+=..|.+.-|++.
T Consensus       398 ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  398 GEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             CCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            11244556654   45666666667777766654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.76  E-value=2e-18  Score=142.62  Aligned_cols=203  Identities=14%  Similarity=0.152  Sum_probs=173.0

Q ss_pred             CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621           84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      ...+.+.++.+|.+|+.|+..|.|-.+|..++++...+.. ...|.++.|-.+.++++++ ....+++||-         
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~---------  198 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDN---------  198 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecC---------
Confidence            4567889999999999999999999999999998888763 5678999999888777766 4578999986         


Q ss_pred             CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEcc
Q 035621          164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~  242 (387)
                          .+..++.+..| ..|..+.|.|..  -+|++++..|.++--|+.+|+.+..+. ..+.+..++-+|-+..+-+|..
T Consensus       199 ----~GtElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs  271 (545)
T KOG1272|consen  199 ----NGTELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS  271 (545)
T ss_pred             ----CCcEEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC
Confidence                56666666655 578889999985  788999999999999999999998887 4567888999999999999999


Q ss_pred             CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621          243 DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       243 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      +|+|.+|.....        .++..+ -.|.++|.++++.++|+|++|.+.|..++|||+++-..+.++..
T Consensus       272 nGtVSlWSP~sk--------ePLvKi-LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t  333 (545)
T KOG1272|consen  272 NGTVSLWSPNSK--------EPLVKI-LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT  333 (545)
T ss_pred             CceEEecCCCCc--------chHHHH-HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence            999999998872        233333 37999999999999999999999999999999999887777665

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=3.5e-18  Score=150.77  Aligned_cols=251  Identities=16%  Similarity=0.142  Sum_probs=185.9

Q ss_pred             eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEE
Q 035621           30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVY  108 (387)
Q Consensus        30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~  108 (387)
                      .+..+.+|...|.|+.|..    .+.++++++.|..++||..+++.++.... |.+.++.++.+.+..++++++.|..|+
T Consensus       182 ~ikrLlgH~naVyca~fDr----tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr  257 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDR----TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR  257 (1113)
T ss_pred             HHHHHHhhhhheeeeeecc----ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence            3455678999999999998    56677779999999999999999988877 678899999999999999999999999


Q ss_pred             EEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-cccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621          109 AISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF-QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC  187 (387)
Q Consensus       109 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  187 (387)
                      +|.+..+.++..+.+|++.|++++|+|-.    +.+.||++++||.+ ........       +. .+ .....+.++.+
T Consensus       258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~pr-------p~-~~-~~~~~~~s~~~  324 (1113)
T KOG0644|consen  258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPR-------PL-KF-TEKDLVDSILF  324 (1113)
T ss_pred             EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCC-------CC-Cc-ccccceeeeec
Confidence            99999999999999999999999999954    78899999999986 11111000       00 00 11244556666


Q ss_pred             eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCC-CCeEEEEccCCcEEEEeccccccccccccceeE
Q 035621          188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPT-ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELV  266 (387)
Q Consensus       188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  266 (387)
                      ...  +.-++|++.|+.-..|.+.....-     ...+.-+..+.+ ..+.+++-.+-.+.+|++..+.         +.
T Consensus       325 ~~~--~~~f~Tgs~d~ea~n~e~~~l~~~-----~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~---------l~  388 (1113)
T KOG0644|consen  325 ENN--GDRFLTGSRDGEARNHEFEQLAWR-----SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ---------LL  388 (1113)
T ss_pred             ccc--ccccccccCCcccccchhhHhhhh-----ccceEEEeccccccccceeeeeeeEeeeeecccch---------hh
Confidence            554  478999999999988876532110     001111111111 1445556667788889887732         22


Q ss_pred             eecccccccEEEEEEecCCCEE-EEEeCCCcEEEEECCCccEEEEeec
Q 035621          267 TLANRHDGVVVSVMMMNEGKNL-VSAAEDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       267 ~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      ....+|...+..+.++|-...+ .+++.||...|||+-.|.+++....
T Consensus       389 H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~  436 (1113)
T KOG0644|consen  389 HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI  436 (1113)
T ss_pred             hhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec
Confidence            2334799999999999966554 5889999999999999988876653

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=2.8e-16  Score=127.43  Aligned_cols=257  Identities=16%  Similarity=0.156  Sum_probs=177.4

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEec------cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC----ccc
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHF------SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST----PLH   78 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~----~~~   78 (387)
                      +.|...+.+..+..+..........+      .....+|..++....      .+++|-.+|.+.+|..+.+.    .+.
T Consensus        70 evl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg------~Litc~~sG~l~~~~~k~~d~hss~l~  143 (412)
T KOG3881|consen   70 EVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG------TLITCVSSGNLQVRHDKSGDLHSSKLI  143 (412)
T ss_pred             eEeeccccCcccccccccCCccccccccccccccccccccchhhcCC------EEEEEecCCcEEEEeccCCccccccce
Confidence            34444445555666655544443332      233445555555443      34446789999999987543    233


Q ss_pred             ccCCCCCeeeEEeccCCC-EEEEecCC--CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621           79 NIPVPEPVAPLATTADGS-YLFTGGLS--GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF  155 (387)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~-~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  155 (387)
                      .+.....+..+.-++... .+++|+..  ..+.+||+++.+.+..-+.          -|+. +|     +=.|-+|+. 
T Consensus       144 ~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN----------vpnD-~L-----~LrVPvW~t-  206 (412)
T KOG3881|consen  144 KLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN----------VPND-RL-----GLRVPVWIT-  206 (412)
T ss_pred             eeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC----------CCCc-cc-----cceeeeeec-
Confidence            333445666666666444 45558877  7889999877644433221          1111 11     123556644 


Q ss_pred             cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-cEEEEEe-cCCceeEEEeCCC
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-THLSTVT-FPCAIMGLALDPT  233 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~  233 (387)
                                                  ++.|.+..+...|++++.-+.+++||.+.+ +++..|. ...+++++...|.
T Consensus       207 ----------------------------di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~  258 (412)
T KOG3881|consen  207 ----------------------------DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS  258 (412)
T ss_pred             ----------------------------cceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCC
Confidence                                        455555544588999999999999999865 4677777 5789999999999


Q ss_pred             CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621          234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      ++++++|..-|.+..||++.        .......+.+..+.|.++..+|.+++++++|-|..|||+|+++.+++...--
T Consensus       259 gn~Iy~gn~~g~l~~FD~r~--------~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv  330 (412)
T KOG3881|consen  259 GNFIYTGNTKGQLAKFDLRG--------GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV  330 (412)
T ss_pred             CcEEEEecccchhheecccC--------ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh
Confidence            99999999999999999998        4455555678899999999999999999999999999999999888876543


Q ss_pred             ccCCCceeEEEEe
Q 035621          314 ELAGSISEMVIAT  326 (387)
Q Consensus       314 ~~~~~v~~~~~~~  326 (387)
                      .  ..++.+.+..
T Consensus       331 K--s~lt~il~~~  341 (412)
T KOG3881|consen  331 K--SRLTFILLRD  341 (412)
T ss_pred             h--ccccEEEecC
Confidence            2  2567776643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=3.2e-17  Score=138.41  Aligned_cols=247  Identities=13%  Similarity=0.177  Sum_probs=170.6

Q ss_pred             eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--CCCCeeeEEecc--CCCEEEEecCCC
Q 035621           30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPVAPLATTA--DGSYLFTGGLSG  105 (387)
Q Consensus        30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~~~dg  105 (387)
                      ..+++.||++.|+++.|+.++.+++    +|+.|-.+.|||.-..+++..+.  |...|.++.|-|  +...+++|..|.
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~----SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk  117 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLA----SGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK  117 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEe----ecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence            3457889999999999999665555    49999999999998888888776  668899999999  456889999999


Q ss_pred             cEEEEeCCCC----------ceeEEccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621          106 NVYAISVPKG----------DILRSFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK  174 (387)
Q Consensus       106 ~i~i~d~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  174 (387)
                      .|+++|+...          +....+..|...|..++-.|++ +.+.++++||+|+-+|+++........  .-...+..
T Consensus       118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~--~~~~~l~n  195 (758)
T KOG1310|consen  118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE--DCPSILVN  195 (758)
T ss_pred             eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc--cccHHHHH
Confidence            9999999742          3345566788999999999987 789999999999999997643322111  01112222


Q ss_pred             eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--------cCCceeEEE-eCCCCCeEEEEccCCc
Q 035621          175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--------FPCAIMGLA-LDPTETDFFAAGSDGL  245 (387)
Q Consensus       175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~~~-~~~~~~~l~~~~~dg~  245 (387)
                      +...--...++.++|.. ..+|+.|+.|-..++||.+...  ..+.        .+....|+. |+|.+-    ...+|.
T Consensus       196 y~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~l--ks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn  268 (758)
T KOG1310|consen  196 YNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVL--KSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGN  268 (758)
T ss_pred             hchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhc--cCCCCCccccCCCCcccchhheecCccc----cCcccc
Confidence            33333456788889885 6899999999999999964321  1111        111122222 222211    011111


Q ss_pred             EEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          246 IYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       246 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      +.                       .....++-+.|+|+|.-|+..-..-.|+++|+..++....+.
T Consensus       269 ~~-----------------------~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  269 LD-----------------------RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF  312 (758)
T ss_pred             cc-----------------------cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence            10                       011235778999999866655455589999999987765543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=1.3e-15  Score=135.78  Aligned_cols=222  Identities=17%  Similarity=0.091  Sum_probs=146.9

Q ss_pred             CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE
Q 035621           63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL  139 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (387)
                      ...|.+||...........+...+...+|+|||+.|+..+.+   ..|++||+.+++... +....+...+.+|+|||+.
T Consensus       183 ~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        183 RYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             eEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence            346899998655555555567789999999999999887643   469999998876543 3334445567899999997


Q ss_pred             EE-EEeCCC--cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CCc--EEEEeCCCC
Q 035621          140 LI-SGGDDG--VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DCT--CKFWRLLNG  213 (387)
Q Consensus       140 l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~  213 (387)
                      ++ +.+.+|  .|++||+.            .+ ....+..+.......+|+|++  +.|+..+. +|.  |.++|+.++
T Consensus       262 l~~~~s~~g~~~Iy~~d~~------------~g-~~~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~~~iy~~dl~~g  326 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLG------------SR-QLTRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGRPQIYRVAASGG  326 (433)
T ss_pred             EEEEEeCCCCceEEEEECC------------CC-CeEECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCC
Confidence            75 445555  58888882            22 234444555555678898885  66666553 444  667777776


Q ss_pred             cEEEEEecCCceeEEEeCCCCCeEEEEccCC---cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE
Q 035621          214 THLSTVTFPCAIMGLALDPTETDFFAAGSDG---LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS  290 (387)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  290 (387)
                      +..............+|+|+|+.|+..+.++   .|++||+..+...         .+.  +........|+|||++|+.
T Consensus       327 ~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~---------~Lt--~~~~~~~p~~spdG~~i~~  395 (433)
T PRK04922        327 SAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR---------TLT--PGSLDESPSFAPNGSMVLY  395 (433)
T ss_pred             CeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE---------ECC--CCCCCCCceECCCCCEEEE
Confidence            5433222334455789999999998875433   5889998763221         111  2223446789999998887


Q ss_pred             EeCC---CcEEEEECCCccEEEEee
Q 035621          291 AAED---GSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       291 ~~~d---g~i~iwd~~~~~~~~~~~  312 (387)
                      .+.+   +.|.++++.. .....+.
T Consensus       396 ~s~~~g~~~L~~~~~~g-~~~~~l~  419 (433)
T PRK04922        396 ATREGGRGVLAAVSTDG-RVRQRLV  419 (433)
T ss_pred             EEecCCceEEEEEECCC-CceEEcc
Confidence            6653   3588888754 4445554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=5.1e-16  Score=140.74  Aligned_cols=264  Identities=14%  Similarity=0.188  Sum_probs=178.4

Q ss_pred             CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC----CCCeeeEEecc--CCCEEEEecCCCcEEEEeCC
Q 035621           40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV----PEPVAPLATTA--DGSYLFTGGLSGNVYAISVP  113 (387)
Q Consensus        40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~----~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~  113 (387)
                      +...+.|+|    ....++++...-.|++||.+.++.+..+..    ...|+.+.+-.  |..++++|+.||.|+||+--
T Consensus      1066 ~pk~~~~hp----f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHP----FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             CCceeeecC----CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            456677777    444455567778999999999999887773    35688888865  55689999999999999742


Q ss_pred             C-----CceeEEccC-------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee-ccCC
Q 035621          114 K-----GDILRSFSA-------HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHND  180 (387)
Q Consensus       114 ~-----~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~  180 (387)
                      .     .+.+..+.+       ..+.=.-+.|.....+|++++.-..|+|||..            .......+. +...
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~------------~E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH------------KEQVVADIPYGSST 1209 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc------------cceeEeecccCCCc
Confidence            2     233333221       11111335677666677777778999999993            333333333 2344


Q ss_pred             CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE---EEEEe-cCCc--eeEEEeCCCCC-eEEEEccCCcEEEEeccc
Q 035621          181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH---LSTVT-FPCA--IMGLALDPTET-DFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~-~~~~--v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~  253 (387)
                      .++++...... +++++.|-.||.|++||.+....   +...+ |...  |..+.+.+.|- .|++|+.+|.|++||++.
T Consensus      1210 ~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1210 LVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             cceeecccccC-CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence            56666554443 68999999999999999986543   33333 4444  99999999774 499999999999999998


Q ss_pred             cccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee------cccCCCceeEEEEe
Q 035621          254 QSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK------NELAGSISEMVIAT  326 (387)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~  326 (387)
                      .......   .+... ....+..+++..+++...+|+|+. +.|+||++.. +.+..++      +...+++++++|-+
T Consensus      1289 ~~~e~~~---~iv~~-~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1289 SSKETFL---TIVAH-WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred             Ccccccc---eeeec-cccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc
Confidence            5222111   11100 011235899999999999999998 9999999764 4444443      33445667776533

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=4.2e-16  Score=131.81  Aligned_cols=207  Identities=15%  Similarity=0.223  Sum_probs=141.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC------
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS------   74 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~------   74 (387)
                      |+|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-|..  ....+++|..|..|+++|+...      
T Consensus        56 LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t--nnriv~sgAgDk~i~lfdl~~~~~~~~d  133 (758)
T KOG1310|consen   56 LEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT--NNRIVLSGAGDKLIKLFDLDSSKEGGMD  133 (758)
T ss_pred             eeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC--CCeEEEeccCcceEEEEecccccccccc
Confidence            789999999999999999999999888887776 6899999999999832  2234556999999999999742      


Q ss_pred             ----CcccccC-CCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCcee----------EEccCCCCCeEEEEEcC-CC
Q 035621           75 ----TPLHNIP-VPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDIL----------RSFSAHDKPVSCLKISP-DG  137 (387)
Q Consensus        75 ----~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~v~~~~~~~-~~  137 (387)
                          +....+. |...|..++..|++ +.+.+++.||+|+-+|++.....          ..+....-...|+..+| +.
T Consensus       134 ~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp  213 (758)
T KOG1310|consen  134 HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRP  213 (758)
T ss_pred             cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCC
Confidence                1222222 55778889999988 78889999999999999763211          11111223567899999 45


Q ss_pred             CEEEEEeCCCcEEEEeCCcccccCCCCCC------CCccceEeee-ccC-----------CCeEEEEEeeCCCCceEEEE
Q 035621          138 SLLISGGDDGVIATVPIFQLVDEHTDDKN------PDDLMLQKFV-AHN-----------DSVTAITCCIGSFNSIIISC  199 (387)
Q Consensus       138 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~-~~~-----------~~i~~~~~~~~~~~~~l~s~  199 (387)
                      .+|++|+.|-..++||.+...........      ....++..+. +|-           ..++.+.|+|++  .-|+..
T Consensus       214 ~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNG--tElLvs  291 (758)
T KOG1310|consen  214 YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNG--TELLVS  291 (758)
T ss_pred             ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCC--cEEEEe
Confidence            68999999999999997554332211111      0111122221 111           124567778775  444444


Q ss_pred             eCCCcEEEEeCCC
Q 035621          200 SMDCTCKFWRLLN  212 (387)
Q Consensus       200 ~~d~~i~iwd~~~  212 (387)
                      -....|+++|+..
T Consensus       292 ~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  292 WGGEHVYLFDVNE  304 (758)
T ss_pred             eCCeEEEEEeecC
Confidence            4445688888743

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=2.9e-15  Score=132.98  Aligned_cols=235  Identities=13%  Similarity=0.072  Sum_probs=153.5

Q ss_pred             CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEec---CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE
Q 035621           63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGG---LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL  139 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (387)
                      ...|.+||.+.............+...+|+|||+.|+..+   .+..|.+|++.+++... +....+.+...+|+|||+.
T Consensus       178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence            3478999987666555555667899999999999988654   23579999998876433 2223344557899999998


Q ss_pred             EEEE-eCCC--cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CCc--EEEEeCCCC
Q 035621          140 LISG-GDDG--VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DCT--CKFWRLLNG  213 (387)
Q Consensus       140 l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~  213 (387)
                      |+.. +.+|  .|++||+.            .. ....+..+...+....|+|++  +.|+..+. ++.  |.++|+.++
T Consensus       257 La~~~~~~g~~~I~~~d~~------------tg-~~~~lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~~~Iy~~d~~~g  321 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLA------------SG-QIRQVTDGRSNNTEPTWFPDS--QNLAYTSDQAGRPQVYKVNINGG  321 (429)
T ss_pred             EEEEEcCCCCcEEEEEECC------------CC-CEEEccCCCCCcCceEECCCC--CEEEEEeCCCCCceEEEEECCCC
Confidence            8765 4455  48888882            22 233444445567788999985  66666554 344  555577666


Q ss_pred             cEEEEEecCCceeEEEeCCCCCeEEEEccC---CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE
Q 035621          214 THLSTVTFPCAIMGLALDPTETDFFAAGSD---GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS  290 (387)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  290 (387)
                      +...............|+|||++|+..+.+   ..|++||+..+...         .+...  .......|+|||++|+.
T Consensus       322 ~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~---------~Lt~~--~~~~~p~~SpDG~~i~~  390 (429)
T PRK03629        322 APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ---------VLTDT--FLDETPSIAPNGTMVIY  390 (429)
T ss_pred             CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE---------EeCCC--CCCCCceECCCCCEEEE
Confidence            543322234455678999999998876543   35788888764321         11111  12345789999999999


Q ss_pred             EeCCCc---EEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          291 AAEDGS---VYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       291 ~~~dg~---i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      ++.++.   +.+++++ |+....+..+ .+.+....|++
T Consensus       391 ~s~~~~~~~l~~~~~~-G~~~~~l~~~-~~~~~~p~Wsp  427 (429)
T PRK03629        391 SSSQGMGSVLNLVSTD-GRFKARLPAT-DGQVKFPAWSP  427 (429)
T ss_pred             EEcCCCceEEEEEECC-CCCeEECccC-CCCcCCcccCC
Confidence            887764   6777874 5555666653 44565555543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=6.7e-15  Score=130.70  Aligned_cols=238  Identities=14%  Similarity=0.063  Sum_probs=156.1

Q ss_pred             cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEE
Q 035621           19 PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYL   98 (387)
Q Consensus        19 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   98 (387)
                      .|.++|..... .+.+..+...+...+|+|++...+.. .....+..+.+|++.+++.......+..+....|+|||+.|
T Consensus       180 ~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~-s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        180 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYV-TFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEE-EecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence            69999976443 34455567789999999976544321 11234568999999888655544455566789999999988


Q ss_pred             EEe-cCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEeCCcccccCCCCCCCCccceEe
Q 035621           99 FTG-GLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD-GVIATVPIFQLVDEHTDDKNPDDLMLQK  174 (387)
Q Consensus        99 ~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~  174 (387)
                      +.. ..+|  .|++||+.+++... +..+...+....|+|||+.|+..+.+ +...+|.+..          ... ....
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~----------~~g-~~~~  325 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI----------NGG-APQR  325 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC----------CCC-CeEE
Confidence            865 3444  59999998887654 43445567889999999988776653 4555553310          111 2233


Q ss_pred             eeccCCCeEEEEEeeCCCCceEEEEeCC---CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCc---EEE
Q 035621          175 FVAHNDSVTAITCCIGSFNSIIISCSMD---CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGL---IYK  248 (387)
Q Consensus       175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~i  248 (387)
                      +..+........|+|++  ++++..+.+   ..|.+||+.+++.. .+..........|+|||++|+.++.++.   +++
T Consensus       326 lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~  402 (429)
T PRK03629        326 ITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNL  402 (429)
T ss_pred             eecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            33344445678888885  666665443   35888999887643 3433333456789999999999888764   556


Q ss_pred             EeccccccccccccceeEeecccccccEEEEEEec
Q 035621          249 GLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN  283 (387)
Q Consensus       249 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  283 (387)
                      +++..         ..... +..|.+.+...+|+|
T Consensus       403 ~~~~G---------~~~~~-l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        403 VSTDG---------RFKAR-LPATDGQVKFPAWSP  427 (429)
T ss_pred             EECCC---------CCeEE-CccCCCCcCCcccCC
Confidence            66543         12222 235777788888887

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.8e-14  Score=116.01  Aligned_cols=246  Identities=14%  Similarity=0.143  Sum_probs=163.9

Q ss_pred             CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC--CCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCC-
Q 035621           40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV--PEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKG-  115 (387)
Q Consensus        40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~--~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~-  115 (387)
                      .++.++|++.    ...++.+..|-.|++|+-.. +....+++  +..|+|++|-|. ++.|++|+..| |.+|..... 
T Consensus       100 dlr~~aWhqH----~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tl  173 (445)
T KOG2139|consen  100 DLRGVAWHQH----IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTL  173 (445)
T ss_pred             ceeeEeechh----hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccc
Confidence            4778889882    23456688999999999766 44445553  468999999995 45777777655 999986321 


Q ss_pred             ---ce----------eEEccCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC
Q 035621          116 ---DI----------LRSFSAHDKPVSCLKISPDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS  181 (387)
Q Consensus       116 ---~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (387)
                         +.          +..-++| .+|++|+|++||..+++++. |..|.+||...            +..+.-.....+.
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt------------g~~~pL~~~glgg  240 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT------------GQKIPLIPKGLGG  240 (445)
T ss_pred             ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC------------CCcccccccCCCc
Confidence               11          1122344 68999999999999999884 67899999832            2222222345577


Q ss_pred             eEEEEEeeCCCCceEEEEeCCCcEEEEeC-CCCcEEEEEecCCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccc
Q 035621          182 VTAITCCIGSFNSIIISCSMDCTCKFWRL-LNGTHLSTVTFPCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQM  259 (387)
Q Consensus       182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~  259 (387)
                      +.-+.|+|++  .+|+.++-|+..++|+. ++....+-.-..+.|...+|+|+|++|+..+. .-.+  |.+........
T Consensus       241 ~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l--ysl~f~~~~~~  316 (445)
T KOG2139|consen  241 FSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL--YSLTFDGEDSV  316 (445)
T ss_pred             eeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceE--EEEeecCCCcc
Confidence            8889999996  89999999999999954 34444444446679999999999988766543 3333  44333221111


Q ss_pred             cc------cceeEe------ec---ccccccEEEEEEecCCCEEEEEeCCC--------cEEEEECCCccEE
Q 035621          260 HK------GQELVT------LA---NRHDGVVVSVMMMNEGKNLVSAAEDG--------SVYIWEIEKRQVV  308 (387)
Q Consensus       260 ~~------~~~~~~------~~---~~~~~~v~~~~~s~~~~~l~s~~~dg--------~i~iwd~~~~~~~  308 (387)
                      ..      ...+..      ..   .-..+++.+++|.|.|.+||+.-..+        .|.+||....-.+
T Consensus       317 ~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v  388 (445)
T KOG2139|consen  317 FLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV  388 (445)
T ss_pred             ccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce
Confidence            11      000000      00   11246789999999999999875443        3677876654433

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.71  E-value=4.1e-16  Score=131.45  Aligned_cols=206  Identities=16%  Similarity=0.244  Sum_probs=152.4

Q ss_pred             cCCCEEEEecCCCcEEEEeCCCCceeEEcc----CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCC----
Q 035621           93 ADGSYLFTGGLSGNVYAISVPKGDILRSFS----AHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTD----  163 (387)
Q Consensus        93 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~----  163 (387)
                      +.+--+++|-..|.+.+.|....+..+.+.    -.+..|+|+.|-| +...++++-.+|.+++||..........    
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            456678888888999999986633222222    1246899999999 4457777888999999987322111000    


Q ss_pred             ------------CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEe
Q 035621          164 ------------DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLAL  230 (387)
Q Consensus       164 ------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~  230 (387)
                                  .......++..+.--.+.|...+|+|+  +++|++.+.||.+||||..+.+.+..++ .-+...|++|
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D--G~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW  340 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPD--GKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW  340 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCC--CceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence                        001122344445555668899999986  5999999999999999999887766555 3467899999


Q ss_pred             CCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec---------------------------
Q 035621          231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN---------------------------  283 (387)
Q Consensus       231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---------------------------  283 (387)
                      +|||++|++|++|..|.||.+..         ..++..-.+|..+|+.++|.|                           
T Consensus       341 SPDGKyIvtGGEDDLVtVwSf~e---------rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~  411 (636)
T KOG2394|consen  341 SPDGKYIVTGGEDDLVTVWSFEE---------RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEI  411 (636)
T ss_pred             cCCccEEEecCCcceEEEEEecc---------ceEEEeccccccceeeEeecccccccccccccccccccccchhccccc
Confidence            99999999999999999999986         455666679999999999983                           


Q ss_pred             --------CC-------------CEEEEEeCCCcEEEEECCCccEEE
Q 035621          284 --------EG-------------KNLVSAAEDGSVYIWEIEKRQVVM  309 (387)
Q Consensus       284 --------~~-------------~~l~s~~~dg~i~iwd~~~~~~~~  309 (387)
                              ++             -.|.+.+.|-.+.+||+....+..
T Consensus       412 r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~  458 (636)
T KOG2394|consen  412 RANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP  458 (636)
T ss_pred             ccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence                    01             146778899999999998765544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.71  E-value=9e-15  Score=123.50  Aligned_cols=221  Identities=19%  Similarity=0.256  Sum_probs=152.8

Q ss_pred             eeeEEeccCCCEEEEecCCCcEEEEeCCCCcee----EEccCCCCCeEEEEE-----cCCCCEEEEEeCCCcEEEEeCCc
Q 035621           86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDIL----RSFSAHDKPVSCLKI-----SPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      +....++-.|.+|+..- ...+++|+.+.+..+    ....-.....+|=+|     .|.+--++.|-.-|.+.+.|...
T Consensus       126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~  204 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN  204 (636)
T ss_pred             eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence            44445555677776543 346888988744221    111111122333344     34566788888889999988743


Q ss_pred             ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC--------------CcEE------
Q 035621          157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN--------------GTHL------  216 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------------~~~~------  216 (387)
                      . +.       ..............++++.|.|.. ...++.+-.+|.+.+||...              +...      
T Consensus       205 ~-~~-------sklfne~r~i~ktsvT~ikWvpg~-~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~k  275 (636)
T KOG2394|consen  205 F-EV-------SKLFNEERLINKSSVTCIKWVPGS-DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSK  275 (636)
T ss_pred             h-HH-------HHhhhhcccccccceEEEEEEeCC-CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeee
Confidence            1 00       000000111234789999999986 46777778899999997631              1111      


Q ss_pred             --------EEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCE
Q 035621          217 --------STVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKN  287 (387)
Q Consensus       217 --------~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  287 (387)
                              ..+. ....|+.++|+|||++||+.+.||.++|||..+.         ++....+..-+...|++|||||+|
T Consensus       276 sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---------eLlg~mkSYFGGLLCvcWSPDGKy  346 (636)
T KOG2394|consen  276 SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---------ELLGVMKSYFGGLLCVCWSPDGKY  346 (636)
T ss_pred             ccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---------HHHHHHHhhccceEEEEEcCCccE
Confidence                    1111 2357889999999999999999999999999873         344444456678999999999999


Q ss_pred             EEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          288 LVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       288 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      |++|++|-.|.||.+..++++..-++|.. -|+.++|.+
T Consensus       347 IvtGGEDDLVtVwSf~erRVVARGqGHkS-WVs~VaFDp  384 (636)
T KOG2394|consen  347 IVTGGEDDLVTVWSFEERRVVARGQGHKS-WVSVVAFDP  384 (636)
T ss_pred             EEecCCcceEEEEEeccceEEEecccccc-ceeeEeecc
Confidence            99999999999999999999999999866 999999984

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.8e-14  Score=128.69  Aligned_cols=218  Identities=11%  Similarity=-0.038  Sum_probs=148.1

Q ss_pred             CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecC---CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE
Q 035621           63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGL---SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL  139 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (387)
                      ...|.++|...........+...+...+|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+...+|+|||+.
T Consensus       181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence            35788999865555544556778999999999999887753   468999999888653 44456667788999999987


Q ss_pred             EE-EEeCCCc--EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CC--cEEEEeCCCC
Q 035621          140 LI-SGGDDGV--IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DC--TCKFWRLLNG  213 (387)
Q Consensus       140 l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~  213 (387)
                      |+ +.+.++.  |++||+.            . .....+..+........|+|++  +.++..+. +|  .|.++|+..+
T Consensus       260 la~~~~~~g~~~Iy~~d~~------------~-~~~~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLR------------S-GTTTRLTDSPAIDTSPSYSPDG--SQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             EEEEEecCCCceEEEEECC------------C-CceEEccCCCCccCceeEcCCC--CEEEEEECCCCCCeEEEEECCCC
Confidence            65 5555655  6667772            2 2334455555566778899885  66666553 33  6888898766


Q ss_pred             cEEEEEecCCceeEEEeCCCCCeEEEEccC---CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE
Q 035621          214 THLSTVTFPCAIMGLALDPTETDFFAAGSD---GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS  290 (387)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  290 (387)
                      +..........+....|+|+|+.|+....+   ..|.+||+.....         ..+.  ....+....|+|||++|+.
T Consensus       325 ~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~---------~~lt--~~~~~~~p~~spDG~~i~~  393 (435)
T PRK05137        325 NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE---------RILT--SGFLVEGPTWAPNGRVIMF  393 (435)
T ss_pred             CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce---------Eecc--CCCCCCCCeECCCCCEEEE
Confidence            544333345566778999999999887643   3577777654211         1111  1224667899999998876


Q ss_pred             EeCC------CcEEEEECCCccE
Q 035621          291 AAED------GSVYIWEIEKRQV  307 (387)
Q Consensus       291 ~~~d------g~i~iwd~~~~~~  307 (387)
                      .+.+      ..++++|+..++.
T Consensus       394 ~~~~~~~~~~~~L~~~dl~g~~~  416 (435)
T PRK05137        394 FRQTPGSGGAPKLYTVDLTGRNE  416 (435)
T ss_pred             EEccCCCCCcceEEEEECCCCce
Confidence            5442      2578888876554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=1.5e-14  Score=128.61  Aligned_cols=224  Identities=16%  Similarity=0.117  Sum_probs=143.6

Q ss_pred             CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE
Q 035621           63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL  139 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (387)
                      ...+.++|...........+...+...+|+|||+.|+..+.+   ..|++||+.+++... +....+.+...+|+|||+.
T Consensus       175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            456888887544444444567789999999999999877643   359999998887543 3333455678999999997


Q ss_pred             EE-EEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CCcEEEEeC--CCCcE
Q 035621          140 LI-SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DCTCKFWRL--LNGTH  215 (387)
Q Consensus       140 l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~i~iwd~--~~~~~  215 (387)
                      |+ +.+.+|...+|.+..           .......+..+........|+|++  +.|+..+. ++...+|.+  .+++.
T Consensus       254 la~~~~~~g~~~Iy~~d~-----------~~~~~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~  320 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNA-----------DGSGLRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAA  320 (427)
T ss_pred             EEEEEccCCCceEEEEEC-----------CCCCcEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCce
Confidence            76 567788777776521           112234444455556677899885  66665443 466666654  44443


Q ss_pred             EEEEecCCceeEEEeCCCCCeEEEEccCC---cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621          216 LSTVTFPCAIMGLALDPTETDFFAAGSDG---LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA  292 (387)
Q Consensus       216 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  292 (387)
                      .............+|+|+|++|+..+.++   .|++||+..+...         .+.  .........|+|||++|+..+
T Consensus       321 ~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~---------~lt--~~~~~~~p~~spdg~~l~~~~  389 (427)
T PRK02889        321 QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT---------ALT--DTTRDESPSFAPNGRYILYAT  389 (427)
T ss_pred             EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE---------Ecc--CCCCccCceECCCCCEEEEEE
Confidence            22222233345678999999998876654   5899998764321         111  112235679999999988776


Q ss_pred             CCC---cEEEEECCCccEEEEee
Q 035621          293 EDG---SVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       293 ~dg---~i~iwd~~~~~~~~~~~  312 (387)
                      .++   .+.+.++ +++....+.
T Consensus       390 ~~~g~~~l~~~~~-~g~~~~~l~  411 (427)
T PRK02889        390 QQGGRSVLAAVSS-DGRIKQRLS  411 (427)
T ss_pred             ecCCCEEEEEEEC-CCCceEEee
Confidence            544   3555565 355555554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.70  E-value=2.4e-14  Score=113.92  Aligned_cols=279  Identities=10%  Similarity=0.058  Sum_probs=188.7

Q ss_pred             ccccCCCcEE-EeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNEVI-LTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      +.|+.|..++ .....++.|.+|++...+-...+.....++.++.|+|++.-   .+.+..-+-.|.+|.+.+.+....-
T Consensus        54 ieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrh---iL~tseF~lriTVWSL~t~~~~~~~  130 (447)
T KOG4497|consen   54 IEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRH---ILLTSEFDLRITVWSLNTQKGYLLP  130 (447)
T ss_pred             eeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcce---EeeeecceeEEEEEEeccceeEEec
Confidence            4577776554 45578889999999988888889888889999999997522   2233677899999999877655443


Q ss_pred             CCCCCeeeEEeccCCCEEEEecCCC------------------------------------cEEEEeCCCCceeEEccCC
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLSG------------------------------------NVYAISVPKGDILRSFSAH  124 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~~~~~~~~~~~  124 (387)
                      -....+..++|+|||++.+..+.-.                                    .+.+||-.-.-.+..+. .
T Consensus       131 ~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~  209 (447)
T KOG4497|consen  131 HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-R  209 (447)
T ss_pred             ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-e
Confidence            3445678899999999877765321                                    12222211000111111 1


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc------------ccc-----------------------------CCC
Q 035621          125 DKPVSCLKISPDGSLLISGGDDGVIATVPIFQL------------VDE-----------------------------HTD  163 (387)
Q Consensus       125 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~-----------------------------~~~  163 (387)
                      .-.+..++|+|.+++|++|+.|+.+++.+-..-            .+.                             ...
T Consensus       210 ~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~  289 (447)
T KOG4497|consen  210 GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIW  289 (447)
T ss_pred             ccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcc
Confidence            246889999999999999999999987543110            000                             000


Q ss_pred             CCC-------------CCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC--CCcEEEEeCCCCcEEEEEecCCceeEE
Q 035621          164 DKN-------------PDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM--DCTCKFWRLLNGTHLSTVTFPCAIMGL  228 (387)
Q Consensus       164 ~~~-------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~v~~~  228 (387)
                      ...             ...++...+......+.-++|+++.  .+++|-..  -..+-+||++..+....+....+|...
T Consensus       290 ~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds--~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf  367 (447)
T KOG4497|consen  290 EESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS--TYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAF  367 (447)
T ss_pred             ccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc--eEEeeecCCCCceEEEEechhhhhhhhhhhccceeEE
Confidence            000             0001111112223456778998885  66666533  256999999998887777788999999


Q ss_pred             EeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCc
Q 035621          229 ALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS  296 (387)
Q Consensus       229 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  296 (387)
                      .|+|....|+.+.....+++|.....         ..+... ...-.|..++|..+|..++-.+.|..
T Consensus       368 ~WdP~~prL~vctg~srLY~W~psg~---------~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  368 EWDPGRPRLVVCTGKSRLYFWAPSGP---------RVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             EeCCCCceEEEEcCCceEEEEcCCCc---------eEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence            99999999999998889999987641         222221 23357999999999999999888853

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=8.4e-15  Score=124.66  Aligned_cols=277  Identities=13%  Similarity=0.103  Sum_probs=188.2

Q ss_pred             ccccCCCcEE-EeeCCCCcEEEEeCCCCceeEeccCCCCC--ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            2 LHHLPCNEVI-LTSSPEGPITAYNPSSGAILAHFSGSRSP--RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         2 l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      +..+|||+|+ |+|...-.|++||+.+-.+.  |..|...  |.-.-.+.+    .+..+.-..|.+|.+..-  ...-.
T Consensus        57 ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD----~SK~v~L~~DR~IefHak--~G~hy  128 (703)
T KOG2321|consen   57 IKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDD----YSKSVFLQNDRTIEFHAK--YGRHY  128 (703)
T ss_pred             eEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccc----hhhheEeecCceeeehhh--cCeee
Confidence            4578999875 67778889999999755443  3334332  332223321    111111234555554321  12222


Q ss_pred             ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621           79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                      .+..+..-..++++.-..-|++++....|+-++++.|+.+..+....+.++++..++-..+|++|+.+|.|..||.+...
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence            33345556667776644446666666789999999999999998878999999999988899999999999999985422


Q ss_pred             ccCCCCCCCCccceEeeeccCC-----CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec--CCceeEEEeC
Q 035621          159 DEHTDDKNPDDLMLQKFVAHND-----SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF--PCAIMGLALD  231 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~  231 (387)
                      ....      -........|.+     .|+++.|..+  |-.+++|+.+|.+.|||++..+++..-.|  ..+|..+.|.
T Consensus       209 rv~~------l~~~~~v~s~pg~~~~~svTal~F~d~--gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~  280 (703)
T KOG2321|consen  209 RVGT------LDAASSVNSHPGGDAAPSVTALKFRDD--GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ  280 (703)
T ss_pred             hhee------eecccccCCCccccccCcceEEEecCC--ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence            1110      011111222333     4899999866  48899999999999999999998877765  4578899998


Q ss_pred             CCCC-eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          232 PTET-DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       232 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      +.+. --++......++|||-.++.        .....  .....++.+|+-|++.+++++-.++.+..|=+..
T Consensus       281 ~~~~q~~v~S~Dk~~~kiWd~~~Gk--------~~asi--Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  281 DTDQQNKVVSMDKRILKIWDECTGK--------PMASI--EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             ccCCCceEEecchHHhhhcccccCC--------ceeec--cccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            7643 33444456789999988843        33332  2345589999999999999998888777776554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=5.7e-15  Score=125.67  Aligned_cols=230  Identities=13%  Similarity=0.211  Sum_probs=164.6

Q ss_pred             cccccCCCCCeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeE----------------------------EccCCC-
Q 035621           76 PLHNIPVPEPVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILR----------------------------SFSAHD-  125 (387)
Q Consensus        76 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~----------------------------~~~~~~-  125 (387)
                      .++.+.++...+.+..+|||+|+. +|...-.|++||+.+-.+..                            .+.-|. 
T Consensus        44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak  123 (703)
T KOG2321|consen   44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK  123 (703)
T ss_pred             HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence            455666788899999999999865 56677899999986543210                            000010 


Q ss_pred             ----------CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCce
Q 035621          126 ----------KPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI  195 (387)
Q Consensus       126 ----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  195 (387)
                                ..-..++++.-..-|+.++....|+-+++            ..+..+..+....+.++++..++..  .+
T Consensus       124 ~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNL------------EqGrfL~P~~~~~~~lN~v~in~~h--gL  189 (703)
T KOG2321|consen  124 YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNL------------EQGRFLNPFETDSGELNVVSINEEH--GL  189 (703)
T ss_pred             cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEc------------cccccccccccccccceeeeecCcc--ce
Confidence                      01123333332223455555566777777            5666777777777899999998875  89


Q ss_pred             EEEEeCCCcEEEEeCCCCcEEEEEecCC------------ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccc
Q 035621          196 IISCSMDCTCKFWRLLNGTHLSTVTFPC------------AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ  263 (387)
Q Consensus       196 l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  263 (387)
                      |++|+.+|.|.+||.+..+....+....            .|+++.|+.+|-.+++|+.+|.+++||++..        .
T Consensus       190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~--------~  261 (703)
T KOG2321|consen  190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS--------K  261 (703)
T ss_pred             EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC--------C
Confidence            9999999999999999888777665322            3999999999999999999999999999983        2


Q ss_pred             eeEeecccccccEEEEEEecC--CCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCC
Q 035621          264 ELVTLANRHDGVVVSVMMMNE--GKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGG  330 (387)
Q Consensus       264 ~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  330 (387)
                      ++..--....-+|..+.|.+.  +..+++. ....++|||-.+|+....+....  .++.+|+.++.+-
T Consensus       262 pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~--~lND~C~~p~sGm  327 (703)
T KOG2321|consen  262 PLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS--DLNDFCFVPGSGM  327 (703)
T ss_pred             ceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC--CcCceeeecCCce
Confidence            333222244567899999765  4456655 45689999999999998887654  3888887776644

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=3.1e-14  Score=127.08  Aligned_cols=237  Identities=13%  Similarity=0.043  Sum_probs=152.5

Q ss_pred             CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCE
Q 035621           18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSY   97 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~   97 (387)
                      ..|.+||.. +...+.+..+...+.+.+|+|++...+.. ........|.+||+.+++.......+....+..|+|||+.
T Consensus       184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~-s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYV-SFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEE-ecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCE
Confidence            359999975 44455566677789999999976543321 1122356799999988876544444555668899999997


Q ss_pred             EEE-ecCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCc--EEEEeCCcccccCCCCCCCCccc
Q 035621           98 LFT-GGLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG-DDGV--IATVPIFQLVDEHTDDKNPDDLM  171 (387)
Q Consensus        98 l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~  171 (387)
                      |+. .+.+|  .|++||+.+++. ..+..+.......+|+|||+.|+..+ .+|.  |+++|+.            ... 
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~------------~g~-  327 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS------------GGS-  327 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC------------CCC-
Confidence            764 44454  699999988775 44555555567889999999887766 3455  5555551            111 


Q ss_pred             eEeeeccCCCeEEEEEeeCCCCceEEEEeCCC---cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC---Cc
Q 035621          172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDC---TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD---GL  245 (387)
Q Consensus       172 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~  245 (387)
                      ...+..+.......+|+|++  +.++..+.++   .|.+||+.+++.. .+..........|+|||++++..+.+   +.
T Consensus       328 ~~~lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~  404 (433)
T PRK04922        328 AERLTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGV  404 (433)
T ss_pred             eEEeecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceE
Confidence            22222233344568888885  6666554332   6999999887654 44443345567999999988877653   35


Q ss_pred             EEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621          246 IYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN  283 (387)
Q Consensus       246 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  283 (387)
                      +++++....         ... .+..+.+.+...+|+|
T Consensus       405 L~~~~~~g~---------~~~-~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        405 LAAVSTDGR---------VRQ-RLVSADGEVREPAWSP  432 (433)
T ss_pred             EEEEECCCC---------ceE-EcccCCCCCCCCccCC
Confidence            666666431         111 1123445566677765

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=1.5e-13  Score=108.94  Aligned_cols=173  Identities=18%  Similarity=0.280  Sum_probs=136.5

Q ss_pred             CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc-CCCcccccC---CCCCeeeEEecc
Q 035621           18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW-SSTPLHNIP---VPEPVAPLATTA   93 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~-~~~~~~~~~---~~~~v~~~~~~~   93 (387)
                      +.|.|||=....++.++. ...+|.++.+.++..+..       ..+.|.||... +.+.++.+.   .+....+++-+.
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvv-------l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~  146 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVV-------LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS  146 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEE-------ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence            569999966667777776 677899999999877665       47899999987 445555555   344455554444


Q ss_pred             CCCEEEEec-CCCcEEEEeCCCCce--eEEccCCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEeCCcccccCCCCCCCCc
Q 035621           94 DGSYLFTGG-LSGNVYAISVPKGDI--LRSFSAHDKPVSCLKISPDGSLLISGGDDGV-IATVPIFQLVDEHTDDKNPDD  169 (387)
Q Consensus        94 ~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~  169 (387)
                      +..+||.-+ .-|.|++-|+...+.  ...+++|...|.|++.+-+|.++|+++..|+ |+|||.            ..+
T Consensus       147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt------------~~g  214 (346)
T KOG2111|consen  147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDT------------EDG  214 (346)
T ss_pred             CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEc------------CCC
Confidence            555666544 568999999976655  4678899999999999999999999999997 799999            667


Q ss_pred             cceEeeecc--CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC
Q 035621          170 LMLQKFVAH--NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN  212 (387)
Q Consensus       170 ~~~~~~~~~--~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  212 (387)
                      ..+.++...  ...|.+++|+|+.  .+|+.+|..|+++||.++.
T Consensus       215 ~~l~E~RRG~d~A~iy~iaFSp~~--s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  215 TLLQELRRGVDRADIYCIAFSPNS--SWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             cEeeeeecCCchheEEEEEeCCCc--cEEEEEcCCCeEEEEEeec
Confidence            777777543  3579999999986  9999999999999999875

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=4.1e-15  Score=120.76  Aligned_cols=208  Identities=14%  Similarity=0.211  Sum_probs=161.1

Q ss_pred             cEEEeeCCCCcEEEEeCCCCc----eeEeccCCCCCceeEEEcCccceeeeccccCCCC--CeEEEEEccCCCcccccC-
Q 035621            9 EVILTSSPEGPITAYNPSSGA----ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS--GSVHLYNLWSSTPLHNIP-   81 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d--~~v~vw~~~~~~~~~~~~-   81 (387)
                      ..|++|-.+|.+.+|..+.+.    .+..+..+ .++..+.-.+.   ....+++|+..  ..+.+||++..+++..-+ 
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~---~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN  191 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDT---DPYIVATGGKENINELKIWDLEQSKQIWSAKN  191 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCC---CCceEecCchhcccceeeeecccceeeeeccC
Confidence            467788889999999987443    23333333 22444444441   11223348888  889999998886655443 


Q ss_pred             ---------CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 035621           82 ---------VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVI  149 (387)
Q Consensus        82 ---------~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  149 (387)
                               .+-.++++.|.+.  ...|++++.-+.+++||.+.+ +++..+.-...+++++...|+++++++|..-|.+
T Consensus       192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l  271 (412)
T KOG3881|consen  192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL  271 (412)
T ss_pred             CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence                     2335678899887  889999999999999999755 5777887778899999999999999999999999


Q ss_pred             EEEeCCcccccCCCCCCCCccceEe-eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEE
Q 035621          150 ATVPIFQLVDEHTDDKNPDDLMLQK-FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGL  228 (387)
Q Consensus       150 ~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~  228 (387)
                      ..||++            ....... +.+..+.|++|..+|..  .++++|+-|+.+||+|+.+.+++........++++
T Consensus       272 ~~FD~r------------~~kl~g~~~kg~tGsirsih~hp~~--~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~i  337 (412)
T KOG3881|consen  272 AKFDLR------------GGKLLGCGLKGITGSIRSIHCHPTH--PVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFI  337 (412)
T ss_pred             heeccc------------CceeeccccCCccCCcceEEEcCCC--ceEEeeccceeEEEeecccchhhhhhhhhccccEE
Confidence            999994            3444443 78889999999999885  89999999999999999998888888778888888


Q ss_pred             EeCCCC
Q 035621          229 ALDPTE  234 (387)
Q Consensus       229 ~~~~~~  234 (387)
                      .+.++-
T Consensus       338 l~~~~~  343 (412)
T KOG3881|consen  338 LLRDDV  343 (412)
T ss_pred             EecCCc
Confidence            886653

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.68  E-value=1.5e-14  Score=113.35  Aligned_cols=157  Identities=14%  Similarity=0.230  Sum_probs=109.2

Q ss_pred             EEEEEcCCCCEEEEEeC---C-------CcEEEEeCCcccccCCCCCCCCccceEeeec-cCCCeEEEEEeeCCCCceE-
Q 035621          129 SCLKISPDGSLLISGGD---D-------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVA-HNDSVTAITCCIGSFNSII-  196 (387)
Q Consensus       129 ~~~~~~~~~~~l~~~~~---d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l-  196 (387)
                      ..+.|+|+|++|+.-..   |       +...+|.++.           .......+.- ..++|.+++|+|++  +.| 
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~-----------~~~~~~~i~l~~~~~I~~~~WsP~g--~~fa   75 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE-----------KNIPVESIELKKEGPIHDVAWSPNG--NEFA   75 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEec-----------CCCccceeeccCCCceEEEEECcCC--CEEE
Confidence            46789999987665433   1       2345555421           1223333332 34579999999986  444 


Q ss_pred             -EEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEcc---CCcEEEEeccccccccccccceeEeecccc
Q 035621          197 -ISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS---DGLIYKGLLKYQSRQQMHKGQELVTLANRH  272 (387)
Q Consensus       197 -~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  272 (387)
                       +.|..++.|.+||++ ++.+..+. ...++.+.|+|+|+++++++.   .|.+.+||.+..        ..+...   +
T Consensus        76 vi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~--------~~i~~~---~  142 (194)
T PF08662_consen   76 VIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK--------KKISTF---E  142 (194)
T ss_pred             EEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC--------EEeecc---c
Confidence             445567899999996 66666664 567789999999999999874   467999999862        222222   2


Q ss_pred             cccEEEEEEecCCCEEEEEeC------CCcEEEEECCCccEEEEee
Q 035621          273 DGVVVSVMMMNEGKNLVSAAE------DGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       273 ~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~  312 (387)
                      ...++.++|+|+|++|+++..      |+.++||+.. |+++....
T Consensus       143 ~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  143 HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            335789999999999998864      7889999985 66665544

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.67  E-value=1.1e-14  Score=134.21  Aligned_cols=222  Identities=14%  Similarity=0.119  Sum_probs=158.5

Q ss_pred             ccCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCC-------ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 035621           79 NIPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKG-------DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIA  150 (387)
Q Consensus        79 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  150 (387)
                      ...|...+..++.++.. .++++|+.||+|++||.+.-       +...++......+.++.+.+.++.+++++.||.|.
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence            34467778888888755 99999999999999998542       12233333467899999999999999999999999


Q ss_pred             EEeCCcccccCCCCCCCCccceEeeeccC-CCeEEE-EEeeCCCCc-eEEEEeCCCcEEEEeCCCCcEEEEEe---cCCc
Q 035621          151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHN-DSVTAI-TCCIGSFNS-IIISCSMDCTCKFWRLLNGTHLSTVT---FPCA  224 (387)
Q Consensus       151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~-~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~  224 (387)
                      +.++.......     ...........+. +.+.++ ++.... +. .++.+..-+.|..||++......+++   .++.
T Consensus      1124 ~~~id~~~~~~-----~~~~~~ri~n~~~~g~vv~m~a~~~~~-~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1124 VLRIDHYNVSK-----RVATQVRIPNLKKDGVVVSMHAFTAIV-QSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred             EEEcccccccc-----ceeeeeecccccCCCceEEeecccccc-cceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence            99995421110     0111111112222 223222 232222 33 78888888999999999887776666   3578


Q ss_pred             eeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC---CEEEEEe--CCCcEEE
Q 035621          225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG---KNLVSAA--EDGSVYI  299 (387)
Q Consensus       225 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~--~dg~i~i  299 (387)
                      |++++.+|.+.+++.|+..|.+.+||++.        ...+..+..++..+++.+..+|-.   ...++++  ..+-|.+
T Consensus      1198 vTSi~idp~~~WlviGts~G~l~lWDLRF--------~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRF--------RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred             eeEEEecCCceEEEEecCCceEEEEEeec--------CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence            99999999999999999999999999998        344455555667888888877643   4555544  4678999


Q ss_pred             EECCCccEEEEeecc
Q 035621          300 WEIEKRQVVMVLKNE  314 (387)
Q Consensus       300 wd~~~~~~~~~~~~~  314 (387)
                      |++.+|.....+...
T Consensus      1270 wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWAS 1284 (1431)
T ss_pred             eecccCcceEEEEcC
Confidence            999999887777654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=6.7e-14  Score=125.08  Aligned_cols=217  Identities=13%  Similarity=0.078  Sum_probs=147.9

Q ss_pred             CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCE
Q 035621           18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSY   97 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~   97 (387)
                      ..|.++|.. +.....+..|...+....|+|++...+.. .....+..|.+||+.+++.......++.+...+|+|||+.
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~-s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYM-SYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEE-EecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence            379999974 55556677788889999999976543321 1123457899999988876544445667888999999998


Q ss_pred             EE-EecCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEeCCcccccCCCCCCCCccc
Q 035621           98 LF-TGGLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-DG--VIATVPIFQLVDEHTDDKNPDDLM  171 (387)
Q Consensus        98 l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~  171 (387)
                      |+ +.+.++  .|++||+.+++. ..+..+........|+|||+.++..+. +|  .|+++|+.             ...
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~-------------g~~  325 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD-------------GSN  325 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECC-------------CCC
Confidence            76 444555  488889887765 445556666778999999998887663 33  57777762             122


Q ss_pred             eEeeeccCCCeEEEEEeeCCCCceEEEEeCC---CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC-----
Q 035621          172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMD---CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD-----  243 (387)
Q Consensus       172 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----  243 (387)
                      ...+..+...+....|+|++  +.|+..+.+   ..|.+||+..+. ...+.....+....|+|||+.|+..+.+     
T Consensus       326 ~~~lt~~~~~~~~~~~SpdG--~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~  402 (435)
T PRK05137        326 PRRISFGGGRYSTPVWSPRG--DLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGG  402 (435)
T ss_pred             eEEeecCCCcccCeEECCCC--CEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEccCCCCC
Confidence            33343344556678899885  676665543   368888976544 3444444457788999999998776542     


Q ss_pred             -CcEEEEeccc
Q 035621          244 -GLIYKGLLKY  253 (387)
Q Consensus       244 -g~i~i~d~~~  253 (387)
                       ..++++|+..
T Consensus       403 ~~~L~~~dl~g  413 (435)
T PRK05137        403 APKLYTVDLTG  413 (435)
T ss_pred             cceEEEEECCC
Confidence             2577777654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.67  E-value=3.2e-12  Score=110.53  Aligned_cols=299  Identities=14%  Similarity=0.147  Sum_probs=182.8

Q ss_pred             EEeeCCC----CcEEEEeC--CCCcee--EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC--C--ccc
Q 035621           11 ILTSSPE----GPITAYNP--SSGAIL--AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--T--PLH   78 (387)
Q Consensus        11 l~~~~~d----g~i~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~--~~~   78 (387)
                      +++|+..    +.|++|++  .+++..  ..+. .......++++|+..++...--....++.|..|++...  +  .+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            3445444    68999888  455442  2222 33346778888855443321111126789999998764  2  222


Q ss_pred             ccC-CCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCC-CceeEE---cc----------CCCCCeEEEEEcCCCCEEEE
Q 035621           79 NIP-VPEPVAPLATTADGSYLFTGG-LSGNVYAISVPK-GDILRS---FS----------AHDKPVSCLKISPDGSLLIS  142 (387)
Q Consensus        79 ~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~  142 (387)
                      ... .......++++|++++|+++. .+|.+.++++.. +.+...   +.          .......++.|+|+++++++
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            333 345667899999999998886 578999999976 433222   11          12345789999999998887


Q ss_pred             EeC-CCcEEEEeCCcccccCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC--CCc--EE
Q 035621          143 GGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL--NGT--HL  216 (387)
Q Consensus       143 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~--~~  216 (387)
                      ... ...|.+|++.....        .-.....+. .....-+.++|+|++ ....++...+++|.++++.  ++.  .+
T Consensus       161 ~dlG~D~v~~~~~~~~~~--------~l~~~~~~~~~~G~GPRh~~f~pdg-~~~Yv~~e~s~~v~v~~~~~~~g~~~~~  231 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTG--------KLTPVDSIKVPPGSGPRHLAFSPDG-KYAYVVNELSNTVSVFDYDPSDGSLTEI  231 (345)
T ss_dssp             EETTTTEEEEEEE-TTS---------TEEEEEEEECSTTSSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             EecCCCEEEEEEEeCCCc--------eEEEeeccccccCCCCcEEEEcCCc-CEEEEecCCCCcEEEEeecccCCceeEE
Confidence            653 45789998832100        011112222 334567889999985 2344555668899999988  442  22


Q ss_pred             EEEec-------CCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEE
Q 035621          217 STVTF-------PCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNL  288 (387)
Q Consensus       217 ~~~~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  288 (387)
                      ..+..       ......++++|||++|+++.. .+.|.+|++......     ................++++|+|++|
T Consensus       232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~-----l~~~~~~~~~G~~Pr~~~~s~~g~~l  306 (345)
T PF10282_consen  232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT-----LTLVQTVPTGGKFPRHFAFSPDGRYL  306 (345)
T ss_dssp             EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT-----EEEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred             EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc-----eEEEEEEeCCCCCccEEEEeCCCCEE
Confidence            23321       125788999999999998865 778999999542111     11111122234458999999999999


Q ss_pred             EEEe-CCCcEEEEEC--CCccEEEEeecccCCCceeEEE
Q 035621          289 VSAA-EDGSVYIWEI--EKRQVVMVLKNELAGSISEMVI  324 (387)
Q Consensus       289 ~s~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~  324 (387)
                      +++. .++.|.+|++  ++|++...-....-..+.+|.|
T Consensus       307 ~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  307 YVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            8876 5678999976  5677665554344456666655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=9.1e-14  Score=123.63  Aligned_cols=240  Identities=13%  Similarity=-0.013  Sum_probs=150.6

Q ss_pred             CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCE
Q 035621           18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSY   97 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~   97 (387)
                      ..|.++|. ++.....+..+...+.+.+|+|++...+..- .......|.+||+.+++.......+......+|+|||+.
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s-~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVS-FESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEE-ccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence            46888886 4555556667788899999999765433210 122345799999988876544445566778999999998


Q ss_pred             EEE-ecCCCcEEEE--eCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceE
Q 035621           98 LFT-GGLSGNVYAI--SVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQ  173 (387)
Q Consensus        98 l~~-~~~dg~i~i~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~  173 (387)
                      |+. .+.+|...+|  |+..++ ...+..+........|+|||+.|+..+. +|...+|.+..          ... ...
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~----------~~g-~~~  321 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA----------SGG-AAQ  321 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC----------CCC-ceE
Confidence            874 5667765555  554444 4555555556677899999998876554 56667776521          111 122


Q ss_pred             eeeccCCCeEEEEEeeCCCCceEEEEeCCC---cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCC-c--EE
Q 035621          174 KFVAHNDSVTAITCCIGSFNSIIISCSMDC---TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDG-L--IY  247 (387)
Q Consensus       174 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~--i~  247 (387)
                      .+..+........|+|++  ++++..+.++   .|.+||+.+++.. .+..........|+|||++|+.++.++ .  ++
T Consensus       322 ~lt~~g~~~~~~~~SpDG--~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~  398 (427)
T PRK02889        322 RVTFTGSYNTSPRISPDG--KLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPNGRYILYATQQGGRSVLA  398 (427)
T ss_pred             EEecCCCCcCceEECCCC--CEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccCceECCCCCEEEEEEecCCCEEEE
Confidence            222222334457888875  7777666554   6999999887654 333333456789999999988887643 3  44


Q ss_pred             EEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621          248 KGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE  284 (387)
Q Consensus       248 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  284 (387)
                      +.+...         .. ...+..+.+.+...+|+|-
T Consensus       399 ~~~~~g---------~~-~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        399 AVSSDG---------RI-KQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             EEECCC---------Cc-eEEeecCCCCCCCCccCCC
Confidence            444422         11 1111234556667777763

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.66  E-value=3.3e-14  Score=111.38  Aligned_cols=275  Identities=14%  Similarity=0.147  Sum_probs=183.4

Q ss_pred             CCCcEEEEeCCCCceeE--ec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC------CCC-C
Q 035621           16 PEGPITAYNPSSGAILA--HF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP------VPE-P   85 (387)
Q Consensus        16 ~dg~i~iwd~~~~~~~~--~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~------~~~-~   85 (387)
                      ..|.+.+|++.+.+...  ++ ......+..+.|.-...-....++-+-..|.|.++..........+.      ... .
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            34788999987665443  12 12334466777763110000122335678899998775544333332      111 2


Q ss_pred             eeeEEeccCCCEEEEecCCCcEEEEeCCCCcee--EEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCC
Q 035621           86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDIL--RSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHT  162 (387)
Q Consensus        86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~  162 (387)
                      ..++.|++.+..++++..+|.+.+-+.......  +.++.|.-+.....|+. +.+.+.+|+.|+.+..||+|-      
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~------  197 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI------  197 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecC------
Confidence            567889999999999999999997665555443  47889999999999987 456899999999999999962      


Q ss_pred             CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-CCcEEEEEecCCceeEEEeCCCCC-eEEEE
Q 035621          163 DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL-NGTHLSTVTFPCAIMGLALDPTET-DFFAA  240 (387)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~  240 (387)
                          +.....+..+.|...|.+|.-+|.. +.++++|+.|..|++||.+ -++++..-...+.|..+.++|.-. .++++
T Consensus       198 ----p~~~i~~n~kvH~~GV~SI~ss~~~-~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~  272 (339)
T KOG0280|consen  198 ----PKTFIWHNSKVHTSGVVSIYSSPPK-PTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAA  272 (339)
T ss_pred             ----CcceeeecceeeecceEEEecCCCC-CceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHH
Confidence                2333344467799999999887763 6899999999999999999 467777777789999999999643 33444


Q ss_pred             ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe-CCCcEE-EEECCCc
Q 035621          241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA-EDGSVY-IWEIEKR  305 (387)
Q Consensus       241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~-iwd~~~~  305 (387)
                      +.-.-.++-+.......    .+......+.|.+-+..-.|.....+|+|++ .|+.++ +|-.-++
T Consensus       273 CMh~G~ki~~~~~~~~e----~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  273 CMHNGAKILDSSDKVLE----FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             HHhcCceEEEecccccc----hheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            44444555555543221    1223344556777777777755556788865 466644 6654443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.65  E-value=3.4e-13  Score=116.31  Aligned_cols=254  Identities=16%  Similarity=0.195  Sum_probs=163.1

Q ss_pred             CCCCCeEEEEEccCCCcccccCCCCCe-eeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC
Q 035621           60 TTGSGSVHLYNLWSSTPLHNIPVPEPV-APLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS  138 (387)
Q Consensus        60 ~~~d~~v~vw~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  138 (387)
                      -..++.|.+.|..+.+.+..+.....+ ..+.|+|||+++++.+.||.|.++|+.+++.+.+++. .....++++++||+
T Consensus        12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~   90 (369)
T PF02239_consen   12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGK   90 (369)
T ss_dssp             EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTT
T ss_pred             ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCC
Confidence            456899999999999999999866554 4478999999999999999999999999999999875 34568899999999


Q ss_pred             EEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEeeecc-------CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeC
Q 035621          139 LLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH-------NDSVTAITCCIGSFNSIIISCSMDCTCKFWRL  210 (387)
Q Consensus       139 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~  210 (387)
                      +++++. ..+.+.++|.            .+.+.++.+...       ...+..+..++.. ..++++.-..+.|.+.|.
T Consensus        91 ~~~v~n~~~~~v~v~D~------------~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vVdy  157 (369)
T PF02239_consen   91 YVYVANYEPGTVSVIDA------------ETLEPVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVVDY  157 (369)
T ss_dssp             EEEEEEEETTEEEEEET------------TT--EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEEET
T ss_pred             EEEEEecCCCceeEecc------------ccccceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEEEEe
Confidence            998776 6899999998            455555555432       3356677666664 235555555588988898


Q ss_pred             CCCcEE--EEEecCCceeEEEeCCCCCeEEEE-ccCCcEEEEecccccccccc---------------------------
Q 035621          211 LNGTHL--STVTFPCAIMGLALDPTETDFFAA-GSDGLIYKGLLKYQSRQQMH---------------------------  260 (387)
Q Consensus       211 ~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~---------------------------  260 (387)
                      ...+.+  ..+..........|+|++++++++ ..++.|.++|..+.......                           
T Consensus       158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~  237 (369)
T PF02239_consen  158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSG  237 (369)
T ss_dssp             TTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred             ccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecc
Confidence            776543  455567788899999999988775 44667878877654321100                           


Q ss_pred             -------------------ccceeEeecccccccEEEEEEecCCCEEEEE----eCCCcEEEEECCCccEEEEeecccCC
Q 035621          261 -------------------KGQELVTLANRHDGVVVSVMMMNEGKNLVSA----AEDGSVYIWEIEKRQVVMVLKNELAG  317 (387)
Q Consensus       261 -------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~  317 (387)
                                         ...+..........+ .-+..+|+++++.+.    ...++|.++|.++.+.+..+......
T Consensus       238 ~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~  316 (369)
T PF02239_consen  238 LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK  316 (369)
T ss_dssp             SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-
T ss_pred             ccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC
Confidence                               000111111112222 556779999999987    45589999999999988888654333


Q ss_pred             CceeEEEEecC
Q 035621          318 SISEMVIATGI  328 (387)
Q Consensus       318 ~v~~~~~~~~~  328 (387)
                      .+..+.|+...
T Consensus       317 ~~~h~ef~~dG  327 (369)
T PF02239_consen  317 RVVHMEFNPDG  327 (369)
T ss_dssp             -EEEEEE-TTS
T ss_pred             cEeccEECCCC
Confidence            46666666544

...

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.64  E-value=6.4e-12  Score=105.95  Aligned_cols=269  Identities=15%  Similarity=0.165  Sum_probs=168.3

Q ss_pred             CcEEEEeCCCCceeEeccCCCCCceeEEEcCcccee--ee----ccccCCCCCeEEEEEccCCCcccccCCCCCe-----
Q 035621           18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIA--AS----HISPTTGSGSVHLYNLWSSTPLHNIPVPEPV-----   86 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~----~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v-----   86 (387)
                      ++|.+.|..+++.+.++.....+- .+ ++|++..+  +.    ++.-|-.+..|.+||..+.+.+..+..+...     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            899999999999999887554443 34 88864332  21    1112237899999999999999888865443     


Q ss_pred             ---eeEEeccCCCEEEEec-C-CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           87 ---APLATTADGSYLFTGG-L-SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        87 ---~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                         ..++++|||++|++.. . +..|.+.|+.+++.+..+.-.. ...-...+++..+  +-+.||......+...    
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~----  177 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTK----  177 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCC----
Confidence               3899999999999876 3 6899999999999988876421 2222222222211  2234444443333110    


Q ss_pred             CCCCCCCccceEe---eeccCCCeEE-EEEeeCCCCceEEEEeCCCcEEEEeCCCC-----cEEEEEe--------cCCc
Q 035621          162 TDDKNPDDLMLQK---FVAHNDSVTA-ITCCIGSFNSIIISCSMDCTCKFWRLLNG-----THLSTVT--------FPCA  224 (387)
Q Consensus       162 ~~~~~~~~~~~~~---~~~~~~~i~~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~--------~~~~  224 (387)
                            .......   +.....++.. -.+.+. ++.++..... |+|.+.|+...     +....+.        .+..
T Consensus       178 ------g~~~~~~~~vf~~~~~~v~~rP~~~~~-dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g  249 (352)
T TIGR02658       178 ------GNPKIKPTEVFHPEDEYLINHPAYSNK-SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG  249 (352)
T ss_pred             ------CceEEeeeeeecCCccccccCCceEcC-CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCc
Confidence                  0000111   1010000000 033442 2455555554 99999996443     3333322        1233


Q ss_pred             eeEEEeCCCCCeEEEEcc----------CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC-EEEEEe-
Q 035621          225 IMGLALDPTETDFFAAGS----------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAA-  292 (387)
Q Consensus       225 v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-  292 (387)
                      +.-++++|+++.+++...          .+.|.++|..+        .+.+..+.  -...+..++++||++ +|++.. 
T Consensus       250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t--------~kvi~~i~--vG~~~~~iavS~Dgkp~lyvtn~  319 (352)
T TIGR02658       250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT--------GKRLRKIE--LGHEIDSINVSQDAKPLLYALST  319 (352)
T ss_pred             ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC--------CeEEEEEe--CCCceeeEEECCCCCeEEEEeCC
Confidence            445999999999988532          25788999887        33333332  245789999999999 777655 


Q ss_pred             CCCcEEEEECCCccEEEEeec
Q 035621          293 EDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       293 ~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      .++.|.++|..+++.++.+..
T Consensus       320 ~s~~VsViD~~t~k~i~~i~~  340 (352)
T TIGR02658       320 GDKTLYIFDAETGKELSSVNQ  340 (352)
T ss_pred             CCCcEEEEECcCCeEEeeecc
Confidence            678899999999999999843

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.63  E-value=7.6e-14  Score=109.39  Aligned_cols=149  Identities=13%  Similarity=0.173  Sum_probs=108.4

Q ss_pred             eeEEeccCCCEEEEecC----------CCcEEEEeCCC-CceeEEccC-CCCCeEEEEEcCCCCEEEEE--eCCCcEEEE
Q 035621           87 APLATTADGSYLFTGGL----------SGNVYAISVPK-GDILRSFSA-HDKPVSCLKISPDGSLLISG--GDDGVIATV  152 (387)
Q Consensus        87 ~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw  152 (387)
                      ..+.|+++|++|++-..          -|...+|.++. ...+..+.- ..++|.+++|+|+++.+++.  ..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35788899987765432          12345555422 233444432 34579999999999986554  467799999


Q ss_pred             eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC---CCcEEEEeCCCCcEEEEEecCCceeEEE
Q 035621          153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM---DCTCKFWRLLNGTHLSTVTFPCAIMGLA  229 (387)
Q Consensus       153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~v~~~~  229 (387)
                      |+             ....+..+  +...++.+.|+|.+  +++++++.   .|.|.+||.++.+.+....+.. ++.++
T Consensus        89 d~-------------~~~~i~~~--~~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~  150 (194)
T PF08662_consen   89 DV-------------KGKKIFSF--GTQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVE  150 (194)
T ss_pred             cC-------------cccEeEee--cCCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEE
Confidence            98             23444444  35678899999985  88888875   3679999999999988877654 68999


Q ss_pred             eCCCCCeEEEEcc------CCcEEEEeccc
Q 035621          230 LDPTETDFFAAGS------DGLIYKGLLKY  253 (387)
Q Consensus       230 ~~~~~~~l~~~~~------dg~i~i~d~~~  253 (387)
                      |+|+|++++++..      |+.++||+...
T Consensus       151 WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  151 WSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            9999999999864      77888998753

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.62  E-value=2e-14  Score=114.98  Aligned_cols=281  Identities=17%  Similarity=0.251  Sum_probs=188.2

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCC----CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPS----SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL   77 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~   77 (387)
                      ++++++.+.|+.|-..|++.-+.+.    .....+.+..|...+..+.|+-    ...++++.+.|..+.---.+.+..+
T Consensus        74 ~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~----~~e~V~s~~~dk~~~~hc~e~~~~l  149 (404)
T KOG1409|consen   74 MEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL----THEWVLSTGKDKQFAWHCTESGNRL  149 (404)
T ss_pred             eeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC----CceeEEEeccccceEEEeeccCCcc
Confidence            5677888899999999999888764    3445666778999999999986    3345555788888766666666666


Q ss_pred             cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeC--CCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621           78 HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISV--PKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF  155 (387)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  155 (387)
                      ..+......+++.+.-.  +.+.|...|.|....+  ..-.++.++.+|.+.+.++.|.|....|++|..|..+.+||+.
T Consensus       150 g~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig  227 (404)
T KOG1409|consen  150 GGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG  227 (404)
T ss_pred             cceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence            55554444444444333  6667777777766554  3456788899999999999999999999999999999999993


Q ss_pred             cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEE----------Ee-----
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLST----------VT-----  220 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------~~-----  220 (387)
                                 ........+.+|...|..+...+.-  ..+.+++.||.|.+||++.......          ..     
T Consensus       228 -----------g~~g~~~el~gh~~kV~~l~~~~~t--~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffw  294 (404)
T KOG1409|consen  228 -----------GRKGTAYELQGHNDKVQALSYAQHT--RQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFW  294 (404)
T ss_pred             -----------CCcceeeeeccchhhhhhhhhhhhh--eeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHH
Confidence                       2344567788999999988877664  7899999999999999975432100          00     


Q ss_pred             ---------------c-----CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEE
Q 035621          221 ---------------F-----PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVM  280 (387)
Q Consensus       221 ---------------~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  280 (387)
                                     |     ...+...+-+ +.....+-+..-.+++-|.-........  ......+..-...|+.+.
T Consensus       295 n~~~m~~~k~~glr~h~crkcg~avc~~c~s-~~~~~p~mg~e~~vR~~~~c~~~i~~~~--~t~LA~phei~tgItamh  371 (404)
T KOG1409|consen  295 NFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS-NRSSYPTMGFEFSVRVCDSCYPTIKDEE--RTPLAIPHEIKTGITAMH  371 (404)
T ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhcCccccc-CccccccccceeEEEEecccchhhhcCC--CCccccccccccceeEEE
Confidence                           0     0111111111 1112222222334454444332222111  111222212234688999


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCC
Q 035621          281 MMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       281 ~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      +..+-.+|+|+|.|..|+|||+..
T Consensus       372 lqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  372 LQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             hhhhccceeecCCceEEEEEechh
Confidence            988888999999999999999864

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.62  E-value=4.5e-13  Score=119.88  Aligned_cols=224  Identities=15%  Similarity=0.075  Sum_probs=145.7

Q ss_pred             CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC
Q 035621           62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS  138 (387)
Q Consensus        62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  138 (387)
                      ....|.++|...........+...+...+|+|||++|+.....   ..|++||+.+++... +..+...+.+++|+||++
T Consensus       168 ~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       168 RRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             CcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence            3456888887655554444556678899999999999887643   479999998886543 334556677899999998


Q ss_pred             EEEE-EeCCC--cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CC--cEEEEeCCC
Q 035621          139 LLIS-GGDDG--VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DC--TCKFWRLLN  212 (387)
Q Consensus       139 ~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~  212 (387)
                      .|+. .+.++  .|++||+..            . ....+..+........|+|++  +.|+..+. ++  .|.++|+.+
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~------------~-~~~~l~~~~~~~~~~~~s~dg--~~l~~~s~~~g~~~iy~~d~~~  311 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDG------------K-QLTRLTNGPGIDTEPSWSPDG--KSIAFTSDRGGSPQIYMMDADG  311 (417)
T ss_pred             EEEEEECCCCCccEEEEECCC------------C-CEEECCCCCCCCCCEEECCCC--CEEEEEECCCCCceEEEEECCC
Confidence            7764 44444  588888722            1 223333444444566788764  66665544 33  588888887


Q ss_pred             CcEEEEEecCCceeEEEeCCCCCeEEEEccCC---cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEE
Q 035621          213 GTHLSTVTFPCAIMGLALDPTETDFFAAGSDG---LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLV  289 (387)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  289 (387)
                      ++...............|+|+|++++.++.++   .|++||+......         .+. . ........|+|+|++|+
T Consensus       312 ~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~---------~l~-~-~~~~~~p~~spdg~~l~  380 (417)
T TIGR02800       312 GEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER---------VLT-D-TGLDESPSFAPNGRMIL  380 (417)
T ss_pred             CCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE---------Ecc-C-CCCCCCceECCCCCEEE
Confidence            76543333556677889999999999887765   7888887763211         111 1 11234568999999888


Q ss_pred             EEeCCC---cEEEEECCCccEEEEeec
Q 035621          290 SAAEDG---SVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       290 s~~~dg---~i~iwd~~~~~~~~~~~~  313 (387)
                      ..+.++   .+++.+.. ++....+..
T Consensus       381 ~~~~~~~~~~l~~~~~~-g~~~~~~~~  406 (417)
T TIGR02800       381 YATTRGGRGVLGLVSTD-GRFRARLPL  406 (417)
T ss_pred             EEEeCCCcEEEEEEECC-CceeeECCC
Confidence            776654   35555543 444455543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.61  E-value=2.1e-12  Score=113.70  Aligned_cols=275  Identities=13%  Similarity=0.112  Sum_probs=173.2

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCe
Q 035621            7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPV   86 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v   86 (387)
                      .+..+++++.+|.|..+|..+|+.+.................      ..++.++.++.+..+|..+|+.+........+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~------~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~  137 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADG------GLVFVGTEKGEVIALDAEDGKELWRAKLSSEV  137 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcC------CEEEEEcCCCEEEEEECCCCcEeeeeccCcee
Confidence            456788888899999999999998876654332222223332      22333678999999999999988777655544


Q ss_pred             eeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeE-----EEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           87 APLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVS-----CLKISPDGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        87 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                      .+.-.. .+..++.+..+|.+..+|.++|+.+..++.....+.     +...  .+..++.+..++.+..+|...     
T Consensus       138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~t-----  209 (377)
T TIGR03300       138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQT-----  209 (377)
T ss_pred             ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccC-----
Confidence            322111 345677788899999999999998877653322111     1111  124677888889999998843     


Q ss_pred             CCCCCCCccceEeeecc-C------CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621          162 TDDKNPDDLMLQKFVAH-N------DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE  234 (387)
Q Consensus       162 ~~~~~~~~~~~~~~~~~-~------~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  234 (387)
                             +..+...... .      .....+.-+|.-.+..++.++.+|.+..||..+++.+........ ..  ....+
T Consensus       210 -------G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~--p~~~~  279 (377)
T TIGR03300       210 -------GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QG--PAVDD  279 (377)
T ss_pred             -------CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cC--ceEeC
Confidence                   2221111100 0      000000001111135778888899999999999988776653221 11  22356


Q ss_pred             CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          235 TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       235 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      ..+++++.+|.++.+|..++.......        ........+...  .+..|++++.+|.|+++|..+|+.+.+++.+
T Consensus       280 ~~vyv~~~~G~l~~~d~~tG~~~W~~~--------~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~  349 (377)
T TIGR03300       280 NRLYVTDADGVVVALDRRSGSELWKND--------ELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTD  349 (377)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEccc--------cccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence            788889999999999998754322110        000111112222  3568889999999999999999999988754


Q ss_pred             c
Q 035621          315 L  315 (387)
Q Consensus       315 ~  315 (387)
                      .
T Consensus       350 ~  350 (377)
T TIGR03300       350 G  350 (377)
T ss_pred             C
Confidence            3

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=2.1e-12  Score=110.05  Aligned_cols=287  Identities=11%  Similarity=0.083  Sum_probs=186.3

Q ss_pred             CccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeecc-ccCCC-----CCeEEEEEccCC
Q 035621            1 LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHI-SPTTG-----SGSVHLYNLWSS   74 (387)
Q Consensus         1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~-----d~~v~vw~~~~~   74 (387)
                      +.++|++|+++|.+.. ..++|++..++..+.+....  .+.++.|+|.+.++..+- .+...     .-.+.+|+++++
T Consensus        39 v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~  115 (566)
T KOG2315|consen   39 VFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG  115 (566)
T ss_pred             eEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeeccc
Confidence            3578999999998764 78999999888544433322  688999999555443311 11112     245779999996


Q ss_pred             CcccccCCCC-CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC--EEEE-----EeCC
Q 035621           75 TPLHNIPVPE-PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS--LLIS-----GGDD  146 (387)
Q Consensus        75 ~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~d  146 (387)
                      .....++... .-.+..|+.|..+.+- -..+.+++|++.+.+.+. -+-|...|+.+.++|.+.  .+++     .+.-
T Consensus       116 ~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaP  193 (566)
T KOG2315|consen  116 VQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAP  193 (566)
T ss_pred             eehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCC
Confidence            6665555332 2268899998764433 345779999987643322 223677899999998633  3433     3445


Q ss_pred             CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC--C---------CcEEEEeCCCCcE
Q 035621          147 GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM--D---------CTCKFWRLLNGTH  215 (387)
Q Consensus       147 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--d---------~~i~iwd~~~~~~  215 (387)
                      +.+++|...... .      ......+.|.  ...-..+.|.+.+.+ +|+.++.  |         .++++.++....+
T Consensus       194 a~vri~~~~~~~-~------~~~~a~ksFF--kadkvqm~WN~~gt~-LLvLastdVDktn~SYYGEq~Lyll~t~g~s~  263 (566)
T KOG2315|consen  194 ASVRIYKYPEEG-Q------HQPVANKSFF--KADKVQMKWNKLGTA-LLVLASTDVDKTNASYYGEQTLYLLATQGESV  263 (566)
T ss_pred             cEEEEecccccc-c------cchhhhcccc--ccceeEEEeccCCce-EEEEEEEeecCCCccccccceEEEEEecCceE
Confidence            679999773100 0      0111111221  111123555555432 3332222  2         4688888885566


Q ss_pred             EEEEecCCceeEEEeCCCCCeEEEE--ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC
Q 035621          216 LSTVTFPCAIMGLALDPTETDFFAA--GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE  293 (387)
Q Consensus       216 ~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  293 (387)
                      ...+...++|.++.|+|+++.+++.  -.-..+.+||++.         ..+..+   ..++=+++-|+|.|++|+.+|-
T Consensus       264 ~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~---------~~v~df---~egpRN~~~fnp~g~ii~lAGF  331 (566)
T KOG2315|consen  264 SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG---------KPVFDF---PEGPRNTAFFNPHGNIILLAGF  331 (566)
T ss_pred             EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC---------CEeEeC---CCCCccceEECCCCCEEEEeec
Confidence            6666678999999999999877664  4477899999886         233332   3566788999999999998775


Q ss_pred             ---CCcEEEEECCCccEEEEeecc
Q 035621          294 ---DGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       294 ---dg~i~iwd~~~~~~~~~~~~~  314 (387)
                         -|.|-|||+.+.+++..+...
T Consensus       332 GNL~G~mEvwDv~n~K~i~~~~a~  355 (566)
T KOG2315|consen  332 GNLPGDMEVWDVPNRKLIAKFKAA  355 (566)
T ss_pred             CCCCCceEEEeccchhhccccccC
Confidence               478999999999999888754

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.59  E-value=2.3e-12  Score=117.43  Aligned_cols=186  Identities=15%  Similarity=0.215  Sum_probs=145.8

Q ss_pred             CCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCc----eeEEEcCccceeeeccccCCCCCeEEEEEccCC-Cccccc
Q 035621            6 PCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPR----RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-TPLHNI   80 (387)
Q Consensus         6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-~~~~~~   80 (387)
                      -+...++.++.++.+.+||...+.....+.......    .-+.++++..    ++++|+.-+.|.+|+.... .+.+..
T Consensus        97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~----~i~~gsv~~~iivW~~~~dn~p~~l~  172 (967)
T KOG0974|consen   97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEEL----YIASGSVFGEIIVWKPHEDNKPIRLK  172 (967)
T ss_pred             hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEE----EEEeccccccEEEEeccccCCcceec
Confidence            345678888888999999998877776665333221    1122344333    4445889999999998633 344456


Q ss_pred             CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE-EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccc
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR-SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVD  159 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  159 (387)
                      .|.+.+..+.++-||.++++.+.|.++++|++++.+... ..-+|...|..+.|.|+  .+++++.|-+.++|+.     
T Consensus       173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-----  245 (967)
T KOG0974|consen  173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-----  245 (967)
T ss_pred             ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec-----
Confidence            688999999999999999999999999999999987765 45589999999999988  8999999999999976     


Q ss_pred             cCCCCCCCCccceEeeeccCC-CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC
Q 035621          160 EHTDDKNPDDLMLQKFVAHND-SVTAITCCIGSFNSIIISCSMDCTCKFWRLLN  212 (387)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  212 (387)
                              ....+..+..|.. .|..++..+..  ...+|++.|+.+++||+..
T Consensus       246 --------~~~~l~~y~~h~g~~iw~~~~~~~~--~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  246 --------NGTQLEVYDEHSGKGIWKIAVPIGV--IIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             --------ccceehhhhhhhhcceeEEEEcCCc--eEEEeeccCcchhhhhhhc
Confidence                    3444556777754 68888887774  8899999999999999854

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=3.2e-12  Score=114.52  Aligned_cols=220  Identities=15%  Similarity=0.109  Sum_probs=139.3

Q ss_pred             eEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE
Q 035621           65 SVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI  141 (387)
Q Consensus        65 ~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  141 (387)
                      .|.++|.+.++......+...+....|+|||+.|+..+.+   ..|.+||+.+++... +....+.+....|+|||+.|+
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la  258 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA  258 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE
Confidence            5778888766555455667788999999999998876533   369999998886543 333344556789999999776


Q ss_pred             -EEeCCC--cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCC--cEEEEeCCCCcE
Q 035621          142 -SGGDDG--VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDC--TCKFWRLLNGTH  215 (387)
Q Consensus       142 -~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~  215 (387)
                       +.+.+|  .|++||+.            .. ....+..+........|+|++  +.++..+ .++  .|.++|+.+++.
T Consensus       259 ~~~~~~g~~~Iy~~d~~------------~~-~~~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        259 FVLSKDGNPEIYVMDLA------------SR-QLSRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             EEEccCCCceEEEEECC------------CC-CeEEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCE
Confidence             444555  57778872            22 233344455555667888875  5555444 333  577788877764


Q ss_pred             EEEEecCCceeEEEeCCCCCeEEEEccC-C--cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621          216 LSTVTFPCAIMGLALDPTETDFFAAGSD-G--LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA  292 (387)
Q Consensus       216 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  292 (387)
                      ..............|+|+|+.++..+.+ +  .|+++|+.++....         +..  ........|+|||++++..+
T Consensus       324 ~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~---------lt~--~~~~~~p~~spdg~~i~~~~  392 (430)
T PRK00178        324 ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI---------LTD--TSLDESPSVAPNGTMLIYAT  392 (430)
T ss_pred             EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE---------ccC--CCCCCCceECCCCCEEEEEE
Confidence            3322222334467899999999887653 3  47788877632211         111  11122458999999888765


Q ss_pred             CC---CcEEEEECCCccEEEEee
Q 035621          293 ED---GSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       293 ~d---g~i~iwd~~~~~~~~~~~  312 (387)
                      .+   ..|.++++.. .....+.
T Consensus       393 ~~~g~~~l~~~~~~g-~~~~~l~  414 (430)
T PRK00178        393 RQQGRGVLMLVSING-RVRLPLP  414 (430)
T ss_pred             ecCCceEEEEEECCC-CceEECc
Confidence            43   3477777753 3333443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=3.9e-12  Score=108.34  Aligned_cols=306  Identities=11%  Similarity=0.098  Sum_probs=195.0

Q ss_pred             CccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeecccc--C-----CCCCeEEEEEccC
Q 035621            1 LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISP--T-----TGSGSVHLYNLWS   73 (387)
Q Consensus         1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~-----~~d~~v~vw~~~~   73 (387)
                      .+.|||-|.+|++-...| |.+|--.+...++.+. |.+ |.-+.|+|...++.++-..  .     .....++|||+.+
T Consensus       215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t  291 (698)
T KOG2314|consen  215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT  291 (698)
T ss_pred             eEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence            368999999999998865 8899988777777775 655 8889999966655443211  0     1235899999999


Q ss_pred             CCcccccCCC---C-CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC---
Q 035621           74 STPLHNIPVP---E-PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD---  146 (387)
Q Consensus        74 ~~~~~~~~~~---~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  146 (387)
                      |...+.+...   . .-.-+.||.|++++|.-..+ .|.||+..+-.++..-.-.-..|....|+|.++.|+.=...   
T Consensus       292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~  370 (698)
T KOG2314|consen  292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN  370 (698)
T ss_pred             cchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence            9988888752   1 23357899999999987764 59999977654443322334678899999998777643321   


Q ss_pred             --CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe----------CCCcEEEEeCCCCc
Q 035621          147 --GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS----------MDCTCKFWRLLNGT  214 (387)
Q Consensus       147 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~----------~d~~i~iwd~~~~~  214 (387)
                        ..+.+-.+            +....+++-..++  |..+.++...+|.+|+.--          .-..+.|+.++...
T Consensus       371 ~parvtL~ev------------Ps~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd  436 (698)
T KOG2314|consen  371 IPARVTLMEV------------PSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD  436 (698)
T ss_pred             CcceEEEEec------------Cccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC
Confidence              12334333            3444444433333  3333333334456665421          11245666666543


Q ss_pred             -EEEEEecCCceeEEEeCCCCCeEEEEcc---CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE
Q 035621          215 -HLSTVTFPCAIMGLALDPTETDFFAAGS---DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS  290 (387)
Q Consensus       215 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  290 (387)
                       ++..+.....|...+|-|.|+.+++-+.   ..++.+|.++....    ....+..+   .....+.+.|+|.|++++.
T Consensus       437 Ipve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~----~~~lVk~~---dk~~~N~vfwsPkG~fvvv  509 (698)
T KOG2314|consen  437 IPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK----KPSLVKEL---DKKFANTVFWSPKGRFVVV  509 (698)
T ss_pred             CCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC----chhhhhhh---cccccceEEEcCCCcEEEE
Confidence             4555667889999999999988776543   46788888774111    01111111   2245678999999999887


Q ss_pred             E---eCCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCce
Q 035621          291 A---AEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSR  332 (387)
Q Consensus       291 ~---~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  332 (387)
                      +   |..|.+.++|.....+...-... ....+.+.+.+.+.-.+
T Consensus       510 a~l~s~~g~l~F~D~~~a~~k~~~~~e-h~~at~veWDPtGRYvv  553 (698)
T KOG2314|consen  510 AALVSRRGDLEFYDTDYADLKDTASPE-HFAATEVEWDPTGRYVV  553 (698)
T ss_pred             EEecccccceEEEecchhhhhhccCcc-ccccccceECCCCCEEE
Confidence            5   45789999998853333222222 23566676766555443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=3.5e-12  Score=113.88  Aligned_cols=233  Identities=16%  Similarity=0.126  Sum_probs=141.3

Q ss_pred             CeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEE
Q 035621           64 GSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLL  140 (387)
Q Consensus        64 ~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  140 (387)
                      ..+.++|....+..........+....|+|||+.|+..+.+   ..|++||+.+++... +....+.....+|+|||+.|
T Consensus       198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            36777787665554455567788999999999998876532   268999998876533 22223334578999999977


Q ss_pred             EE-EeCCCc--EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCC--cEEEEeCCCCc
Q 035621          141 IS-GGDDGV--IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDC--TCKFWRLLNGT  214 (387)
Q Consensus       141 ~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~  214 (387)
                      +. .+.+|.  |+++|+.            .. ....+..+.......+|+|++  +.++..+ .++  .|.++|+.+++
T Consensus       277 a~~~~~~g~~~Iy~~dl~------------tg-~~~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~  341 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIA------------TK-ALTRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGK  341 (448)
T ss_pred             EEEEeCCCCeEEEEEECC------------CC-CeEECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCC
Confidence            65 556665  6666762            22 233444455556678899885  5555444 344  46677887776


Q ss_pred             EEEEEecCCceeEEEeCCCCCeEEEEcc-CC--cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621          215 HLSTVTFPCAIMGLALDPTETDFFAAGS-DG--LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA  291 (387)
Q Consensus       215 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  291 (387)
                      ..............+|+|||++|+..+. ++  .|+++|+..+...         .+...  .......|+|+|++|+..
T Consensus       342 ~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~---------~lt~~--~~d~~ps~spdG~~I~~~  410 (448)
T PRK04792        342 VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ---------VLTST--RLDESPSVAPNGTMVIYS  410 (448)
T ss_pred             EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE---------EccCC--CCCCCceECCCCCEEEEE
Confidence            4432222233445789999999888765 34  3455666553211         11111  111234799999988765


Q ss_pred             eC-CC--cEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621          292 AE-DG--SVYIWEIEKRQVVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       292 ~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  325 (387)
                      +. +|  .+++++. +|+....+..+ .+.+....|+
T Consensus       411 ~~~~g~~~l~~~~~-~G~~~~~l~~~-~g~~~~p~Ws  445 (448)
T PRK04792        411 TTYQGKQVLAAVSI-DGRFKARLPAG-QGEVKSPAWS  445 (448)
T ss_pred             EecCCceEEEEEEC-CCCceEECcCC-CCCcCCCccC
Confidence            54 33  3777786 45555556543 3344444443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.56  E-value=1.1e-12  Score=105.29  Aligned_cols=247  Identities=10%  Similarity=0.131  Sum_probs=164.9

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc-----eeEeccCCC------------CCceeEEEcCccceeeeccccCCCCC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA-----ILAHFSGSR------------SPRRGLTFAGKPFIAASHISPTTGSG   64 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~~~~~d~   64 (387)
                      +.|..+|++||+|..+|.|.++.-....     ....++.|.            ..|+.+.|.+.+..  ..+...+.|.
T Consensus        31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~--a~FLlstNdk  108 (433)
T KOG1354|consen   31 VEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL--AEFLLSTNDK  108 (433)
T ss_pred             EEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc--cEEEEecCCc
Confidence            4688899999999999999999754322     334455554            34888888875432  2334467899


Q ss_pred             eEEEEEccCCCccc-----------------------------------ccC--CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621           65 SVHLYNLWSSTPLH-----------------------------------NIP--VPEPVAPLATTADGSYLFTGGLSGNV  107 (387)
Q Consensus        65 ~v~vw~~~~~~~~~-----------------------------------~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i  107 (387)
                      +|++|.+.......                                   .+.  |.-.|+++.++.|+..++++ .|=.|
T Consensus       109 tiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRI  187 (433)
T KOG1354|consen  109 TIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRI  187 (433)
T ss_pred             ceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceee
Confidence            99999885432111                                   000  33457788999999888887 56789


Q ss_pred             EEEeCCCCce---eEEccCC-----CCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccc--cCCC--CCCCCccceEe
Q 035621          108 YAISVPKGDI---LRSFSAH-----DKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVD--EHTD--DKNPDDLMLQK  174 (387)
Q Consensus       108 ~i~d~~~~~~---~~~~~~~-----~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~--~~~~--~~~~~~~~~~~  174 (387)
                      .+|+++-...   +..++.+     ..-|++..|+| ..+.++..+..|+|++-|+++...  ....  .....+....-
T Consensus       188 NLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsf  267 (433)
T KOG1354|consen  188 NLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSF  267 (433)
T ss_pred             eeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhh
Confidence            9999864322   2223333     34588999999 456888888999999999974211  1000  00011111122


Q ss_pred             eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeC-CCCcEEEEEecC-------------C---ceeEEEeCCCCCeE
Q 035621          175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRL-LNGTHLSTVTFP-------------C---AIMGLALDPTETDF  237 (387)
Q Consensus       175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~-------------~---~v~~~~~~~~~~~l  237 (387)
                      +..--..|..+.|++++  +++++-.. -+|++||+ ...+++.+++.+             .   .-..++|+-++.++
T Consensus       268 fseiIsSISDvKFs~sG--ryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v  344 (433)
T KOG1354|consen  268 FSEIISSISDVKFSHSG--RYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYV  344 (433)
T ss_pred             HHHHhhhhhceEEccCC--cEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceE
Confidence            23344678899999885  88887543 68999999 456666666521             1   23468999999999


Q ss_pred             EEEccCCcEEEEecccc
Q 035621          238 FAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       238 ~~~~~dg~i~i~d~~~~  254 (387)
                      ++|+.....++++...+
T Consensus       345 ~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  345 MTGSYNNVFRVFNLARG  361 (433)
T ss_pred             ecccccceEEEecCCCC
Confidence            99999999999996543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.56  E-value=3e-13  Score=123.03  Aligned_cols=198  Identities=13%  Similarity=0.149  Sum_probs=155.0

Q ss_pred             CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCC----CeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621           83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDK----PVSCLKISPDGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                      .+.+....+..+.+.++.+..+..+.+||...+.....+.....    ...-+.++++.-++++|+.-+.|.+|+..   
T Consensus        87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~---  163 (967)
T KOG0974|consen   87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH---  163 (967)
T ss_pred             cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc---
Confidence            34555566677778899999999999999988776665543221    11223456677799999999999999984   


Q ss_pred             ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE--EEecCCceeEEEeCCCCCe
Q 035621          159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS--TVTFPCAIMGLALDPTETD  236 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~  236 (387)
                               .......+.+|.+.|.++.++.++  .++++.|.|.++++|++.+.+...  -|.|...+..++|.|+  .
T Consensus       164 ---------~dn~p~~l~GHeG~iF~i~~s~dg--~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~  230 (967)
T KOG0974|consen  164 ---------EDNKPIRLKGHEGSIFSIVTSLDG--RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--R  230 (967)
T ss_pred             ---------ccCCcceecccCCceEEEEEccCC--cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--e
Confidence                     111122688999999999998875  999999999999999999987665  4568899999999998  9


Q ss_pred             EEEEccCCcEEEEeccccccccccccceeEeeccccc-ccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621          237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHD-GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       237 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  306 (387)
                      +++++.|-+.++|+.+..         .+. .+..|. ..+..++..++...++|++.|+.+++|++....
T Consensus       231 i~t~gedctcrvW~~~~~---------~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  231 IITVGEDCTCRVWGVNGT---------QLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             eEEeccceEEEEEecccc---------eeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence            999999999999966542         222 233454 469999999999999999999999999987643

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.56  E-value=3.8e-12  Score=113.95  Aligned_cols=208  Identities=15%  Similarity=0.118  Sum_probs=139.5

Q ss_pred             CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCE
Q 035621           18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSY   97 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~   97 (387)
                      ..|.++|.. +.....+..+...+....|+|++...+.. ........|.+||+.+++......+...+.+++|+|||+.
T Consensus       170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~-~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYV-SFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEE-EcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence            358888875 44445565667778899999977655431 1122346899999988866555555666778999999987


Q ss_pred             EEEe-cCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEeCCcccccCCCCCCCCccc
Q 035621           98 LFTG-GLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-DG--VIATVPIFQLVDEHTDDKNPDDLM  171 (387)
Q Consensus        98 l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~  171 (387)
                      |+.. +.++  .|++||+.+++.. .+..+........|+|+++.|+..+. ++  .|+++|+.            .. .
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~------------~~-~  313 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD------------GG-E  313 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC------------CC-C
Confidence            7643 4443  6899999877643 44445555567799999998876654 33  46666662            11 2


Q ss_pred             eEeeeccCCCeEEEEEeeCCCCceEEEEeCCC---cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCC
Q 035621          172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDC---TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDG  244 (387)
Q Consensus       172 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  244 (387)
                      ...+..+........|+|++  ++++.++.++   .|.+||+.++.. ..+..........|+|++++|+..+.++
T Consensus       314 ~~~l~~~~~~~~~~~~spdg--~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       314 VRRLTFRGGYNASPSWSPDG--DLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             EEEeecCCCCccCeEECCCC--CEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEeCC
Confidence            23344455566778888875  7777777665   789999987654 3333333345668999999988877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.56  E-value=2.6e-12  Score=110.17  Aligned_cols=211  Identities=16%  Similarity=0.179  Sum_probs=159.9

Q ss_pred             cCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCC
Q 035621            5 LPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPE   84 (387)
Q Consensus         5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~   84 (387)
                      .|-..++|....||.++|||..+++....|..                .+.    .+..++-..|.+.-+..........
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p----------------~~~----~s~t~~~~~w~L~~~~s~~k~~~~~   61 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP----------------IAS----LSGTCTYTKWGLSADYSPMKWLSLE   61 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeecc----------------chh----ccCcceeEEEEEEeccchHHHHhHH
Confidence            45678999999999999999999888776642                111    2334445556543221111110001


Q ss_pred             CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCC
Q 035621           85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS--AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHT  162 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  162 (387)
                      .+.  .-+.+-..++-|...|.|.+|+...++....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+.        
T Consensus        62 ~~~--~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~--------  131 (541)
T KOG4547|consen   62 KAK--KASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILE--------  131 (541)
T ss_pred             HHh--hccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEec--------
Confidence            111  112345578889999999999999999888776  68899999999998899999999999999998        


Q ss_pred             CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCC-----CCe
Q 035621          163 DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPT-----ETD  236 (387)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~-----~~~  236 (387)
                          .....+..+...+..+.+++++|++  ..+++++  +.|++||+++++.+..|+ |.++|+++.|..+     |.+
T Consensus       132 ----~~~~~~~~~~~~~~~~~sl~is~D~--~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~  203 (541)
T KOG4547|consen  132 ----KEKVIIRIWKEQKPLVSSLCISPDG--KILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKY  203 (541)
T ss_pred             ----ccceeeeeeccCCCccceEEEcCCC--CEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccce
Confidence                6777788888888999999999884  8888886  689999999999999998 7789999999877     666


Q ss_pred             EEEE-ccCCcEEEEeccc
Q 035621          237 FFAA-GSDGLIYKGLLKY  253 (387)
Q Consensus       237 l~~~-~~dg~i~i~d~~~  253 (387)
                      ++++ ..+..+.+|-...
T Consensus       204 vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  204 VLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eeeccccccceeEEEEEc
Confidence            6665 4467788887765

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=7.7e-12  Score=106.71  Aligned_cols=273  Identities=15%  Similarity=0.145  Sum_probs=175.4

Q ss_pred             ccccCCCcEEEee-----C-----CCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc
Q 035621            2 LHHLPCNEVILTS-----S-----PEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL   71 (387)
Q Consensus         2 l~~s~~~~~l~~~-----~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~   71 (387)
                      |.|||-|++|.+=     .     ..-.+.+|+++++.....++.....-++..|+.+..+.+.     -..+.+++|+.
T Consensus        79 L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-----lv~nev~f~~~  153 (566)
T KOG2315|consen   79 LLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-----LVSNEVQFYDL  153 (566)
T ss_pred             eeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhh-----hhcceEEEEec
Confidence            5689999988872     1     1245789999997666666543333368889887665542     24678999998


Q ss_pred             cCCCcccccCCCCCeeeEEeccCC--CEEEE-----ecCCCcEEEEeCCCCceeEEc---cCCCCCeEEEEEcCCCC-EE
Q 035621           72 WSSTPLHNIPVPEPVAPLATTADG--SYLFT-----GGLSGNVYAISVPKGDILRSF---SAHDKPVSCLKISPDGS-LL  140 (387)
Q Consensus        72 ~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~-~l  140 (387)
                      .+.+.+...-+...+..+.++|.+  ..+|+     .+.-+.+++|.......-..+   .-....=..+.|++-|. +|
T Consensus       154 ~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LL  233 (566)
T KOG2315|consen  154 GSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALL  233 (566)
T ss_pred             CCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEE
Confidence            775444444456789999999863  33443     234458999987632211111   01122334677888666 33


Q ss_pred             E--EEeCCC---------cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEe
Q 035621          141 I--SGGDDG---------VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWR  209 (387)
Q Consensus       141 ~--~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd  209 (387)
                      +  +..-|.         ++++.++            ........ -...++|.++.|++++..--++-|-.--.+.|||
T Consensus       234 vLastdVDktn~SYYGEq~Lyll~t------------~g~s~~V~-L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn  300 (566)
T KOG2315|consen  234 VLASTDVDKTNASYYGEQTLYLLAT------------QGESVSVP-LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN  300 (566)
T ss_pred             EEEEEeecCCCccccccceEEEEEe------------cCceEEEe-cCCCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence            3  222333         4666666            21112222 2347899999999997333344555677899999


Q ss_pred             CCCCcEEEEEecCCceeEEEeCCCCCeEEEEcc---CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC
Q 035621          210 LLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS---DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK  286 (387)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  286 (387)
                      ++ +.++..+ .+++=+++-|+|.|++++.++-   .|.|-+||..+..        .+..+   ....-+-+.|+|||+
T Consensus       301 lr-~~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K--------~i~~~---~a~~tt~~eW~PdGe  367 (566)
T KOG2315|consen  301 LR-GKPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK--------LIAKF---KAANTTVFEWSPDGE  367 (566)
T ss_pred             CC-CCEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh--------hcccc---ccCCceEEEEcCCCc
Confidence            75 4455444 3566788999999999988765   5899999998722        22221   223446789999999


Q ss_pred             EEEEEeC------CCcEEEEECCCc
Q 035621          287 NLVSAAE------DGSVYIWEIEKR  305 (387)
Q Consensus       287 ~l~s~~~------dg~i~iwd~~~~  305 (387)
                      +|+|++.      |+.++||+....
T Consensus       368 ~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  368 YFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             EEEEEeccccEEecCCeEEEEecCc
Confidence            9998764      788999997643

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.54  E-value=7.2e-14  Score=133.35  Aligned_cols=192  Identities=16%  Similarity=0.152  Sum_probs=155.2

Q ss_pred             cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--CCCCeeeEEeccCCCEEEEecCCCcEEEEeC
Q 035621           35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPVAPLATTADGSYLFTGGLSGNVYAISV  112 (387)
Q Consensus        35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  112 (387)
                      +.+-..|.++.-+|    ...+.++|+.||.+++|....++.+..+.  .+..|+.+.|+.+|+.+..+..||.+.+|..
T Consensus      2205 k~~v~~v~r~~sHp----~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHP----SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred             ecccCceeeecCCC----CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeeccc
Confidence            34555677777777    44455669999999999998888877776  3467999999999999999999999999998


Q ss_pred             CCCceeEEccCCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee
Q 035621          113 PKGDILRSFSAHDKPVSCLKISPDGSLLISGG---DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI  189 (387)
Q Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  189 (387)
                      . .++....+.|....+.+.|-.  ..+++++   .++.+.+||....         +....+.  ..|.+.++++++.|
T Consensus      2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~---------~~~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP---------PMNSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred             C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC---------cccceee--eecCCCceEEEEcC
Confidence            5 667777888999999999965  5666665   4688999998321         2223333  78999999999999


Q ss_pred             CCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccc
Q 035621          190 GSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQS  255 (387)
Q Consensus       190 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  255 (387)
                      ..  ++|++|+.+|.|++||++..+.++.++.        ++ ...++++|+..|.|+||++....
T Consensus      2347 ~~--qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2347 KH--QLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             cc--eEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccc
Confidence            86  9999999999999999998887777653        44 56789999999999999998743

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.1e-11  Score=109.97  Aligned_cols=245  Identities=13%  Similarity=0.021  Sum_probs=148.3

Q ss_pred             CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceee-eccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCC
Q 035621           18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAA-SHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGS   96 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~   96 (387)
                      ..|.+.|...+. .+.+.........-.|+|++.-.+ .++........|.+.++.+++.......++.....+|+|||+
T Consensus       165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence            468888875443 444655566677889999753211 111112234578888998887655555566667789999999


Q ss_pred             EEEEecC-CC--c--EEEEeCCCC---ceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCC
Q 035621           97 YLFTGGL-SG--N--VYAISVPKG---DILRSFSAHDKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNP  167 (387)
Q Consensus        97 ~l~~~~~-dg--~--i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~  167 (387)
                      .|+..+. +|  .  +..|++..+   +.......+.......+|+|||+.|+..+ .+|...+|.+.-.         .
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~---------~  314 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID---------P  314 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc---------c
Confidence            8886542 22  3  344676642   33333323333456789999999777665 5665555543100         0


Q ss_pred             CccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC---CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEcc--
Q 035621          168 DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD---CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS--  242 (387)
Q Consensus       168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--  242 (387)
                      .......+..+...+....|+|++  +.|+..+.+   ..|.+||+.+++..........+....|+|||+.|+....  
T Consensus       315 ~g~~~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~  392 (428)
T PRK01029        315 EGQSPRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNS  392 (428)
T ss_pred             cccceEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCC
Confidence            111233344444566788899986  666655443   4699999998876543333446778999999998876543  


Q ss_pred             -CCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621          243 -DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE  284 (387)
Q Consensus       243 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  284 (387)
                       ...|+++++..+..         ..+. ...+.+...+|+|-
T Consensus       393 g~~~L~~vdl~~g~~---------~~Lt-~~~g~~~~p~Ws~~  425 (428)
T PRK01029        393 NESELYLISLITKKT---------RKIV-IGSGEKRFPSWGAF  425 (428)
T ss_pred             CCceEEEEECCCCCE---------EEee-cCCCcccCceecCC
Confidence             35678888765321         1111 23344566777764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1.3e-12  Score=114.55  Aligned_cols=280  Identities=12%  Similarity=0.101  Sum_probs=188.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc---------------eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeE
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA---------------ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSV   66 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v   66 (387)
                      ++|+.+..++|.|+.||.++|..+.+..               .-+++.||...|.-+.|+..    ...+.++..+|.|
T Consensus        20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~----~QKLTtSDt~GlI   95 (1189)
T KOG2041|consen   20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN----NQKLTTSDTSGLI   95 (1189)
T ss_pred             EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc----cccccccCCCceE
Confidence            4688899999999999999999875421               12467899999999999983    3445558899999


Q ss_pred             EEEEccCCCcccccC---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee-EEccCCCCCeEEEEEcCCCCEEEE
Q 035621           67 HLYNLWSSTPLHNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL-RSFSAHDKPVSCLKISPDGSLLIS  142 (387)
Q Consensus        67 ~vw~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~  142 (387)
                      .+|-+-.+......-   ..+.|.+++|+.+|..++....||.|.+=.+...+.- +.++  ......+.|++|.+.++.
T Consensus        96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf  173 (1189)
T KOG2041|consen   96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQALF  173 (1189)
T ss_pred             EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHHHHh
Confidence            999998886554443   4467999999999999999999999888776443321 1122  223457899999999888


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeC------CCCceEEEEeCCCcEEEEeCCCCcEE
Q 035621          143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIG------SFNSIIISCSMDCTCKFWRLLNGTHL  216 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~l~s~~~d~~i~iwd~~~~~~~  216 (387)
                      +-.+|.+.++|............. .-.....+......|..+.|...      ++...|+.+...|.+.|..-.+....
T Consensus       174 ~~ange~hlydnqgnF~~Kl~~~c-~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P  252 (1189)
T KOG2041|consen  174 KKANGETHLYDNQGNFERKLEKDC-EVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP  252 (1189)
T ss_pred             hhcCCcEEEecccccHHHhhhhce-EEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence            989999999998433221100000 00000011111223445555321      13478999999999999877766666


Q ss_pred             EEEecCCceeEEEeCCCCCeEEEEccCC---------cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCE
Q 035621          217 STVTFPCAIMGLALDPTETDFFAAGSDG---------LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKN  287 (387)
Q Consensus       217 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  287 (387)
                      ..+..+..+....|+++|..|++++.+.         .|.+|..          .......++.....|++++|-..|-.
T Consensus       253 vv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp----------~G~i~gtlkvpg~~It~lsWEg~gLr  322 (1189)
T KOG2041|consen  253 VVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP----------YGHIVGTLKVPGSCITGLSWEGTGLR  322 (1189)
T ss_pred             eEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc----------chhheEEEecCCceeeeeEEcCCceE
Confidence            6677778899999999999999998753         2333221          12333334455677888888766655


Q ss_pred             EEEEeCCCcEEE
Q 035621          288 LVSAAEDGSVYI  299 (387)
Q Consensus       288 l~s~~~dg~i~i  299 (387)
                      ++.+ .|+.|++
T Consensus       323 iA~A-vdsfiyf  333 (1189)
T KOG2041|consen  323 IAIA-VDSFIYF  333 (1189)
T ss_pred             EEEE-ecceEEE
Confidence            5543 3444433

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=2.5e-11  Score=108.80  Aligned_cols=215  Identities=14%  Similarity=0.068  Sum_probs=135.4

Q ss_pred             cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEE
Q 035621           19 PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYL   98 (387)
Q Consensus        19 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   98 (387)
                      .|.++|...+. ...+..+...+....|+|++...+.. ........|.+|++.+++........+......|+|||+.|
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~-s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYV-SFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEE-EcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEE
Confidence            48888876444 45555677788999999976543321 11122357999999888665544445556679999999988


Q ss_pred             EE-ecCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEeCCcccccCCCCCCCCccce
Q 035621           99 FT-GGLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-DG--VIATVPIFQLVDEHTDDKNPDDLML  172 (387)
Q Consensus        99 ~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~  172 (387)
                      +. ...+|  .|++||+.+++.. .+..+........|+||++.++..+. +|  .|+++|+.            .+. .
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~------------~g~-~  323 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN------------GGR-A  323 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC------------CCC-E
Confidence            74 44444  6888999887654 45555556677899999997766553 44  46666662            121 1


Q ss_pred             EeeeccCCCeEEEEEeeCCCCceEEEEeC-CC--cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC-C--cE
Q 035621          173 QKFVAHNDSVTAITCCIGSFNSIIISCSM-DC--TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD-G--LI  246 (387)
Q Consensus       173 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i  246 (387)
                      ..+...........|+|++  +.++..+. ++  .|.+||+.+++. ..+..........|+|+|+.++..+.+ |  .+
T Consensus       324 ~~lt~~~~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l  400 (430)
T PRK00178        324 ERVTFVGNYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYATRQQGRGVL  400 (430)
T ss_pred             EEeecCCCCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEEEecCCceEE
Confidence            2222112223356788875  66665554 33  588899988764 333332233456899999998887653 3  35


Q ss_pred             EEEecc
Q 035621          247 YKGLLK  252 (387)
Q Consensus       247 ~i~d~~  252 (387)
                      ++++..
T Consensus       401 ~~~~~~  406 (430)
T PRK00178        401 MLVSIN  406 (430)
T ss_pred             EEEECC
Confidence            555554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.51  E-value=3.7e-11  Score=101.50  Aligned_cols=276  Identities=18%  Similarity=0.128  Sum_probs=185.6

Q ss_pred             ccccCCCcEEEeeCCC---------------CcEEEEeCCCCceeEeccCCCCC--ce-eEEEcCccceeeeccccCCCC
Q 035621            2 LHHLPCNEVILTSSPE---------------GPITAYNPSSGAILAHFSGSRSP--RR-GLTFAGKPFIAASHISPTTGS   63 (387)
Q Consensus         2 l~~s~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~~~~~~~d   63 (387)
                      +.|||.+++|.+=+..               +.+.+||..+|..+..+.....+  .+ -+.|+-+..+.+..     ..
T Consensus        77 ~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-----v~  151 (561)
T COG5354          77 LDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-----VG  151 (561)
T ss_pred             cccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-----cc
Confidence            5799999999985433               35999999999999999876666  55 56777655554431     34


Q ss_pred             CeEEEEEccCCCcc-cccC--CCCCeeeEEeccCC--CEEEE-----ecCCCcEEEEeCCCCceeEEccCCCCCeEEEEE
Q 035621           64 GSVHLYNLWSSTPL-HNIP--VPEPVAPLATTADG--SYLFT-----GGLSGNVYAISVPKGDILRSFSAHDKPVSCLKI  133 (387)
Q Consensus        64 ~~v~vw~~~~~~~~-~~~~--~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  133 (387)
                      ..+.++++ ++... ..+.  ....+....|+|.+  ..|+.     .+..+.+++|.+..+..+.+..-....=..+.|
T Consensus       152 ~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW  230 (561)
T COG5354         152 SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKW  230 (561)
T ss_pred             CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEE
Confidence            57899997 33221 1111  13578889999964  34443     346678999999877666544333333356888


Q ss_pred             cCCCCEEEEEe-----------CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC
Q 035621          134 SPDGSLLISGG-----------DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD  202 (387)
Q Consensus       134 ~~~~~~l~~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  202 (387)
                      ++.|++++.--           ....++++++.             ...+.......++|...+|.|.+++--+++|-.+
T Consensus       231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-------------e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p  297 (561)
T COG5354         231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-------------ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP  297 (561)
T ss_pred             ecCCceEEEEEEEeeecccceeccceEEEEeec-------------ccccceeccccccceeeeecccCCceeEEecccc
Confidence            88888665421           12457777772             1222222255789999999999855555666788


Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEcc---CCcEEEEeccccccccccccceeEeecccccccEEEE
Q 035621          203 CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS---DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV  279 (387)
Q Consensus       203 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  279 (387)
                      ..+.++|++..  +..+-.+..=+.+.|+|.+++++.++-   .|.|.+||...        .......+  ......-+
T Consensus       298 a~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~--------rf~~~~~~--~~~n~s~~  365 (561)
T COG5354         298 ASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG--------RFKVAGAF--NGLNTSYC  365 (561)
T ss_pred             cceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCC--------ceEEEEEe--ecCCceEe
Confidence            99999999876  333334555567889999999998765   57899998875        22222121  12334567


Q ss_pred             EEecCCCEEEEEe------CCCcEEEEECCCccEE
Q 035621          280 MMMNEGKNLVSAA------EDGSVYIWEIEKRQVV  308 (387)
Q Consensus       280 ~~s~~~~~l~s~~------~dg~i~iwd~~~~~~~  308 (387)
                      .|+||++++.+..      .|..|+|||+...+.-
T Consensus       366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             eccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence            8999999888753      4788999998765443

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=3.9e-11  Score=106.35  Aligned_cols=228  Identities=12%  Similarity=-0.011  Sum_probs=137.1

Q ss_pred             CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEE---EEecCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCC
Q 035621           63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYL---FTGGLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDG  137 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  137 (387)
                      ...|.+.|.+.++.............-.|+|||+.+   ++...+|  .|.+.++.+++... +....+.....+|+|||
T Consensus       164 ~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG  242 (428)
T PRK01029        164 QGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK  242 (428)
T ss_pred             cceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence            346777787666554444455667788999999752   2444443  68888988776433 22334455678999999


Q ss_pred             CEEEEEeC-CC----cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCCcEEEE--e
Q 035621          138 SLLISGGD-DG----VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDCTCKFW--R  209 (387)
Q Consensus       138 ~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iw--d  209 (387)
                      +.|+..+. +|    .+..|++...         ...........+.......+|+|++  +.|+..+ .+|...+|  +
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g---------~~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETG---------AIGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccC---------CCCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEE
Confidence            88876553 23    2334555210         0111222222222334567899886  6555544 46655555  4


Q ss_pred             CCC-CcEEEEEe-cCCceeEEEeCCCCCeEEEEccC---CcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621          210 LLN-GTHLSTVT-FPCAIMGLALDPTETDFFAAGSD---GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE  284 (387)
Q Consensus       210 ~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  284 (387)
                      +.. +.....+. ....+....|+|||+.|+..+.+   ..|++||+..+...         .+. .....+....|+||
T Consensus       312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~---------~Lt-~~~~~~~~p~wSpD  381 (428)
T PRK01029        312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY---------QLT-TSPENKESPSWAID  381 (428)
T ss_pred             CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE---------Ecc-CCCCCccceEECCC
Confidence            432 23334443 33566788999999988876543   46889998764321         111 12234567899999


Q ss_pred             CCEEEEEeC---CCcEEEEECCCccEEEEee
Q 035621          285 GKNLVSAAE---DGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       285 ~~~l~s~~~---dg~i~iwd~~~~~~~~~~~  312 (387)
                      |+.|+....   ...|++||+.+++......
T Consensus       382 G~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~  412 (428)
T PRK01029        382 SLHLVYSAGNSNESELYLISLITKKTRKIVI  412 (428)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence            998875432   3568999998887654443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.50  E-value=3.6e-10  Score=97.81  Aligned_cols=239  Identities=13%  Similarity=0.124  Sum_probs=151.2

Q ss_pred             ccccCCCcEEEeeCC----CCcEEEEeCCCC--c--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC
Q 035621            2 LHHLPCNEVILTSSP----EGPITAYNPSSG--A--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS   73 (387)
Q Consensus         2 l~~s~~~~~l~~~~~----dg~i~iwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~   73 (387)
                      |+++|++++|.+...    +|.|..|++...  +  .+.+..........++++|++.++..   +...+|.+.++++..
T Consensus        42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~v---any~~g~v~v~~l~~  118 (345)
T PF10282_consen   42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYV---ANYGGGSVSVFPLDD  118 (345)
T ss_dssp             EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEE---EETTTTEEEEEEECT
T ss_pred             EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEE---EEccCCeEEEEEccC
Confidence            678999999888765    568999887653  3  33334323344567888886543322   134689999999976


Q ss_pred             C-Ccccc---cC-----------CCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCCCc--ee--EEcc-CCCCCeEEEE
Q 035621           74 S-TPLHN---IP-----------VPEPVAPLATTADGSYLFTGG-LSGNVYAISVPKGD--IL--RSFS-AHDKPVSCLK  132 (387)
Q Consensus        74 ~-~~~~~---~~-----------~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~--~~--~~~~-~~~~~v~~~~  132 (387)
                      . .....   +.           ......++.++|+++++++.. ....|.+|++....  +.  ..+. ......+.++
T Consensus       119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~  198 (345)
T PF10282_consen  119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA  198 (345)
T ss_dssp             TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred             CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence            3 22221   11           224578899999999888864 33479999987654  32  2222 3456789999


Q ss_pred             EcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEeeec------cCCCeEEEEEeeCCCCceEEE-EeCCCc
Q 035621          133 ISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA------HNDSVTAITCCIGSFNSIIIS-CSMDCT  204 (387)
Q Consensus       133 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~s-~~~d~~  204 (387)
                      |+|+++++++.. .++.|.++++....        .....+.....      .......|+++|++  ++|++ ...+.+
T Consensus       199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg--~~lyvsnr~~~s  268 (345)
T PF10282_consen  199 FSPDGKYAYVVNELSNTVSVFDYDPSD--------GSLTEIQTISTLPEGFTGENAPAEIAISPDG--RFLYVSNRGSNS  268 (345)
T ss_dssp             E-TTSSEEEEEETTTTEEEEEEEETTT--------TEEEEEEEEESCETTSCSSSSEEEEEE-TTS--SEEEEEECTTTE
T ss_pred             EcCCcCEEEEecCCCCcEEEEeecccC--------CceeEEEEeeeccccccccCCceeEEEecCC--CEEEEEeccCCE
Confidence            999999876665 56789999884100        01111121111      11256788899886  55554 445788


Q ss_pred             EEEEeCC--CCc--EEEEEec-CCceeEEEeCCCCCeEEEEcc-CCcEEEEeccc
Q 035621          205 CKFWRLL--NGT--HLSTVTF-PCAIMGLALDPTETDFFAAGS-DGLIYKGLLKY  253 (387)
Q Consensus       205 i~iwd~~--~~~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~  253 (387)
                      |.+|++.  +++  .+..+.. ......++++|+|++|+++.. ++.|.+|++..
T Consensus       269 I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  269 ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            9999993  233  3334443 455899999999999998875 77899998864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=3.9e-11  Score=107.26  Aligned_cols=236  Identities=13%  Similarity=0.077  Sum_probs=140.5

Q ss_pred             cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEE
Q 035621           19 PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYL   98 (387)
Q Consensus        19 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   98 (387)
                      .|.++|.. |...+.+..+...+....|+|++...+.. ........|.+||+.+++.......+......+|+|||+.|
T Consensus       199 ~l~i~d~d-G~~~~~l~~~~~~~~~p~wSPDG~~La~~-s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYD-GYNEQMLLRSPEPLMSPAWSPDGRKLAYV-SFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCC-CCCceEeecCCCcccCceECCCCCEEEEE-EecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEE
Confidence            57777864 43344555667788999999976543321 00122346889999887654433334445678999999988


Q ss_pred             EE-ecCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEeCCcccccCCCCCCCCccce
Q 035621           99 FT-GGLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-DGV--IATVPIFQLVDEHTDDKNPDDLML  172 (387)
Q Consensus        99 ~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~  172 (387)
                      +. ...+|  .|+++|+.+++. ..+..+.......+|+||++.++..+. ++.  |.++|+.            .+. .
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~------------~g~-~  342 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA------------SGK-V  342 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC------------CCC-E
Confidence            75 45555  488889887764 444445556678899999998766553 444  5555552            221 2


Q ss_pred             EeeeccCCCeEEEEEeeCCCCceEEEEeC-CC--cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEcc-CCc--E
Q 035621          173 QKFVAHNDSVTAITCCIGSFNSIIISCSM-DC--TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS-DGL--I  246 (387)
Q Consensus       173 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i  246 (387)
                      ..+..........+|+|++  ++++..+. ++  .|.++|+.+++.. .+..........|+|+|+.|+.... ++.  +
T Consensus       343 ~~Lt~~g~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l  419 (448)
T PRK04792        343 SRLTFEGEQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDESPSVAPNGTMVIYSTTYQGKQVL  419 (448)
T ss_pred             EEEecCCCCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCCCceECCCCCEEEEEEecCCceEE
Confidence            2222222223456788886  56555444 44  4566788777643 3332222234589999998877655 333  5


Q ss_pred             EEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621          247 YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN  283 (387)
Q Consensus       247 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  283 (387)
                      ++++...         ..... +..+.+.+...+|+|
T Consensus       420 ~~~~~~G---------~~~~~-l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        420 AAVSIDG---------RFKAR-LPAGQGEVKSPAWSP  446 (448)
T ss_pred             EEEECCC---------CceEE-CcCCCCCcCCCccCC
Confidence            5666532         11111 223445566777776

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=2.8e-11  Score=103.20  Aligned_cols=264  Identities=14%  Similarity=0.103  Sum_probs=173.9

Q ss_pred             ccccCCCcEEEeeCC-----------CCcEEEEeCCCCceeEeccCC--CCCcee-EEEcCccceeeeccccCCCCCeEE
Q 035621            2 LHHLPCNEVILTSSP-----------EGPITAYNPSSGAILAHFSGS--RSPRRG-LTFAGKPFIAASHISPTTGSGSVH   67 (387)
Q Consensus         2 l~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~--~~~v~~-~~~~~~~~~~~~~~~~~~~d~~v~   67 (387)
                      +.|||+.++|+|-+.           ...++|||+.+|...+.+...  ...+.. ..|+.+..+.+..     ....|.
T Consensus       255 idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm-----~~~sis  329 (698)
T KOG2314|consen  255 IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM-----TGNSIS  329 (698)
T ss_pred             eecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEe-----ccceEE
Confidence            679999999999652           246999999999998888753  223333 4788877777642     237899


Q ss_pred             EEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCC-----CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE
Q 035621           68 LYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLS-----GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI  141 (387)
Q Consensus        68 vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  141 (387)
                      ||+..+..++..-. ....|..+.|+|.++.||.-...     ..+.+..+.+++.+++.+-|.-.=..+.|-.+|.+|+
T Consensus       330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc  409 (698)
T KOG2314|consen  330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC  409 (698)
T ss_pred             EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence            99876654443333 23679999999999988865422     3678888888888887766654445677777888877


Q ss_pred             EEeC-------CC---cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC---CCcEEEE
Q 035621          142 SGGD-------DG---VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM---DCTCKFW  208 (387)
Q Consensus       142 ~~~~-------dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---d~~i~iw  208 (387)
                      .--.       -|   .+.|+.++.           ...++..+ .-...|...+|-|.+  +.+++-+.   ..++.+|
T Consensus       410 vkvdR~tK~~~~g~f~n~eIfrire-----------KdIpve~v-elke~vi~FaWEP~g--dkF~vi~g~~~k~tvsfY  475 (698)
T KOG2314|consen  410 VKVDRHTKSKVKGQFSNLEIFRIRE-----------KDIPVEVV-ELKESVIAFAWEPHG--DKFAVISGNTVKNTVSFY  475 (698)
T ss_pred             EEEEeeccccccceEeeEEEEEeec-----------cCCCceee-ecchheeeeeeccCC--CeEEEEEccccccceeEE
Confidence            5321       12   244444421           22222222 345677788888886  44443332   3578888


Q ss_pred             eCCC-Cc---EEEEEecCCceeEEEeCCCCCeEEEE---ccCCcEEEEeccccccccccccceeEeecccccccEEEEEE
Q 035621          209 RLLN-GT---HLSTVTFPCAIMGLALDPTETDFFAA---GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM  281 (387)
Q Consensus       209 d~~~-~~---~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  281 (387)
                      -+++ ..   .+..+. ....+.+.|+|.|++++++   +..|.+..+|..........         .......+.+.|
T Consensus       476 ~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~---------~~eh~~at~veW  545 (698)
T KOG2314|consen  476 AVETNIKKPSLVKELD-KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA---------SPEHFAATEVEW  545 (698)
T ss_pred             EeecCCCchhhhhhhc-ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc---------CccccccccceE
Confidence            8873 22   233332 3567889999999998886   45789999998862221111         112234678899


Q ss_pred             ecCCCEEEEEeCC
Q 035621          282 MNEGKNLVSAAED  294 (387)
Q Consensus       282 s~~~~~l~s~~~d  294 (387)
                      .|.|+|+++++.-
T Consensus       546 DPtGRYvvT~ss~  558 (698)
T KOG2314|consen  546 DPTGRYVVTSSSS  558 (698)
T ss_pred             CCCCCEEEEeeeh
Confidence            9999999998754

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.47  E-value=1.1e-10  Score=98.60  Aligned_cols=281  Identities=14%  Similarity=0.161  Sum_probs=183.5

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccc-----------cCCCCCeEEEEE
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHIS-----------PTTGSGSVHLYN   70 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~~~d~~v~vw~   70 (387)
                      .+|||.|.+|++.... .|.+|....+..+..+. |. .|..+.|+|.+.++..+--           --..++.+.+||
T Consensus        38 ~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd  114 (561)
T COG5354          38 VSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-HP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWD  114 (561)
T ss_pred             eeecCcchheehhhcc-ceEEccccchhheeeee-cC-CceecccCcccceeeeeccCCccChhhccCCccccCceeEEe
Confidence            4799999999998875 59999988877666664 33 3888999997766654321           112344699999


Q ss_pred             ccCCCcccccCCCC-C--ee-eEEeccCCCEEEEecCCCcEEEEeCCCCcee-EEccCC-CCCeEEEEEcCCCC--EEEE
Q 035621           71 LWSSTPLHNIPVPE-P--VA-PLATTADGSYLFTGGLSGNVYAISVPKGDIL-RSFSAH-DKPVSCLKISPDGS--LLIS  142 (387)
Q Consensus        71 ~~~~~~~~~~~~~~-~--v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~-~~~v~~~~~~~~~~--~l~~  142 (387)
                      ..++..+..+.... +  .. -+.|+.+.+++|-- ....++++++ ++... ..+..- ...|....|+|.++  .|+.
T Consensus       115 ~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~  192 (561)
T COG5354         115 IASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAY  192 (561)
T ss_pred             ccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEE
Confidence            99999888877432 2  23 67888888877655 3456999997 43321 111111 35688889999643  3332


Q ss_pred             -----EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-----------CCCcEE
Q 035621          143 -----GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-----------MDCTCK  206 (387)
Q Consensus       143 -----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-----------~d~~i~  206 (387)
                           .+..+++++|.+            +....+.+..--...-..+.|.+.+  ++|+.--           ....+.
T Consensus       193 ~tPEk~~kpa~~~i~sI------------p~~s~l~tk~lfk~~~~qLkW~~~g--~~ll~l~~t~~ksnKsyfgesnLy  258 (561)
T COG5354         193 WTPEKLNKPAMVRILSI------------PKNSVLVTKNLFKVSGVQLKWQVLG--KYLLVLVMTHTKSNKSYFGESNLY  258 (561)
T ss_pred             EccccCCCCcEEEEEEc------------cCCCeeeeeeeEeecccEEEEecCC--ceEEEEEEEeeecccceeccceEE
Confidence                 456788999988            2222222221111122235555543  4333211           124688


Q ss_pred             EEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc--cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621          207 FWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG--SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE  284 (387)
Q Consensus       207 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  284 (387)
                      ++++....+.-.....++|...+|.|.++.+++.+  .+..+.++|++..          +...  .....=+.+.|+|.
T Consensus       259 l~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------l~~~--~Pe~~rNT~~fsp~  326 (561)
T COG5354         259 LLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------LRFY--FPEQKRNTIFFSPH  326 (561)
T ss_pred             EEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc----------eEEe--cCCcccccccccCc
Confidence            88887555444445678999999999998877655  5888999998862          2211  23444567889999


Q ss_pred             CCEEEEEeCC---CcEEEEECCCccEEE-Eeec
Q 035621          285 GKNLVSAAED---GSVYIWEIEKRQVVM-VLKN  313 (387)
Q Consensus       285 ~~~l~s~~~d---g~i~iwd~~~~~~~~-~~~~  313 (387)
                      +++++.++-|   |.+-+||...+..+. .+.+
T Consensus       327 ~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~  359 (561)
T COG5354         327 ERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG  359 (561)
T ss_pred             ccEEEEecCCccccceEEeccCCceEEEEEeec
Confidence            9999998765   689999988776554 5554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=2.6e-09  Score=87.03  Aligned_cols=291  Identities=12%  Similarity=0.122  Sum_probs=184.7

Q ss_pred             CCcEEEEeCCCC--ce-eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC--CCcc--cccCC-CCCeee
Q 035621           17 EGPITAYNPSSG--AI-LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS--STPL--HNIPV-PEPVAP   88 (387)
Q Consensus        17 dg~i~iwd~~~~--~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~--~~~~--~~~~~-~~~v~~   88 (387)
                      +.-|++|++.+.  +. ...+-.+.+.++-|+|+|+...+... .--+.+|.|..|.++.  |+..  ..... ..+...
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v-~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y   93 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVV-NEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY   93 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEE-EecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence            466999998732  21 12223466678899999976333221 1134478888888764  4322  22222 234588


Q ss_pred             EEeccCCCEEEEecC-CCcEEEEeCCC-CceeE--EccCCCCC----------eEEEEEcCCCCEEEEEeC-CCcEEEEe
Q 035621           89 LATTADGSYLFTGGL-SGNVYAISVPK-GDILR--SFSAHDKP----------VSCLKISPDGSLLISGGD-DGVIATVP  153 (387)
Q Consensus        89 ~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~iwd  153 (387)
                      ++++++|++++++.. .|.|.++-++. |.+..  .+..|.+.          +....+.|++++|++.+- --.|.+|+
T Consensus        94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~  173 (346)
T COG2706          94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD  173 (346)
T ss_pred             EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence            999999999998864 47899998855 43221  12234444          788999999999988863 34688999


Q ss_pred             CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCCcEEEEeCCCC-cEEEEEe----------c
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDCTCKFWRLLNG-THLSTVT----------F  221 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~-~~~~~~~----------~  221 (387)
                      +.....        .......+ .....-+.|.|+|++  ++.+... .+++|.+|..... ..+..++          .
T Consensus       174 ~~dg~L--------~~~~~~~v-~~G~GPRHi~FHpn~--k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g  242 (346)
T COG2706         174 LDDGKL--------TPADPAEV-KPGAGPRHIVFHPNG--KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG  242 (346)
T ss_pred             cccCcc--------cccccccc-CCCCCcceEEEcCCC--cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC
Confidence            842110        00111111 334566789999986  6655444 4899999998873 2232222          2


Q ss_pred             CCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC-cEEE
Q 035621          222 PCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG-SVYI  299 (387)
Q Consensus       222 ~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~i  299 (387)
                      ......+.++|||++|.++.. ...|.+|.+......     .........+........|++.|++|+++..++ .|.+
T Consensus       243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~-----L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~v  317 (346)
T COG2706         243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK-----LELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITV  317 (346)
T ss_pred             CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-----EEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEE
Confidence            356778999999999999876 457888887764321     122222234555578899999999999887654 6888


Q ss_pred             EECC--CccEEEEeecccCCCceeEEE
Q 035621          300 WEIE--KRQVVMVLKNELAGSISEMVI  324 (387)
Q Consensus       300 wd~~--~~~~~~~~~~~~~~~v~~~~~  324 (387)
                      |.++  +|++-..........+.+|.|
T Consensus       318 f~~d~~TG~L~~~~~~~~~p~Pvcv~f  344 (346)
T COG2706         318 FERDKETGRLTLLGRYAVVPEPVCVKF  344 (346)
T ss_pred             EEEcCCCceEEecccccCCCCcEEEEE
Confidence            8654  566655444344445556655

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.46  E-value=3e-12  Score=102.73  Aligned_cols=228  Identities=15%  Similarity=0.186  Sum_probs=150.8

Q ss_pred             CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-----eeEEccCC------------CCCeEEEEEcCCCC--EEEEE
Q 035621           83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD-----ILRSFSAH------------DKPVSCLKISPDGS--LLISG  143 (387)
Q Consensus        83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~------------~~~v~~~~~~~~~~--~l~~~  143 (387)
                      .+-+.++.|...|.+|++|..+|.|.++.-....     ....++.|            ...|..+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            3568899999999999999999999999753322     22334344            24578899988654  67788


Q ss_pred             eCCCcEEEEeCCcccccCCCC----CC--------------C-----CccceEe-eeccCCCeEEEEEeeCCCCceEEEE
Q 035621          144 GDDGVIATVPIFQLVDEHTDD----KN--------------P-----DDLMLQK-FVAHNDSVTAITCCIGSFNSIIISC  199 (387)
Q Consensus       144 ~~dg~i~iwd~~~~~~~~~~~----~~--------------~-----~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~  199 (387)
                      +.|.+|++|.++.........    ..              +     ...+.+. -.+|.-.|++|.+..+.  ..++++
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~--Et~lSA  182 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK--ETFLSA  182 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc--ceEeec
Confidence            899999999985432111000    00              0     0001111 13577788999887664  667665


Q ss_pred             eCCCcEEEEeCCCCcE-EEEEe---c-----CCceeEEEeCCCC-CeEEEEccCCcEEEEecccccccccc-------cc
Q 035621          200 SMDCTCKFWRLLNGTH-LSTVT---F-----PCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMH-------KG  262 (387)
Q Consensus       200 ~~d~~i~iwd~~~~~~-~~~~~---~-----~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~  262 (387)
                       .|=.|.+|++.-... .....   +     ..-|++..|+|.. +.++-.+..|.|++.|++........       ..
T Consensus       183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped  261 (433)
T KOG1354|consen  183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED  261 (433)
T ss_pred             -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence             578899999874332 22222   1     2358899999975 56677788999999999854322111       11


Q ss_pred             ceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC-CCccEEEEeecc
Q 035621          263 QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI-EKRQVVMVLKNE  314 (387)
Q Consensus       263 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~  314 (387)
                      .....++..--..|..+.|+++|+|+++-+. -+|++||+ ...+++.+++.|
T Consensus       262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence            1122223333456899999999999998754 48999999 456777777765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=3.5e-11  Score=106.68  Aligned_cols=298  Identities=13%  Similarity=0.155  Sum_probs=195.8

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccc----e----eeeccccCCCCCeEEEEEccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPF----I----AASHISPTTGSGSVHLYNLWS   73 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~----~----~~~~~~~~~~d~~v~vw~~~~   73 (387)
                      +.|+|.| ++|.|+. ..|.+-|..+.+.++.+..|...|+.+.|.|...    +    ..-.++++...|.|.+||...
T Consensus        21 ~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~   98 (1062)
T KOG1912|consen   21 ADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL   98 (1062)
T ss_pred             cccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh
Confidence            4577777 7788775 5799999999999999999999999999987321    1    122567788899999999999


Q ss_pred             CCcccccCCC-CCeeeEEeccC---C-CEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCC
Q 035621           74 STPLHNIPVP-EPVAPLATTAD---G-SYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDG  147 (387)
Q Consensus        74 ~~~~~~~~~~-~~v~~~~~~~~---~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg  147 (387)
                      +..+..++++ .++..++|-+.   . ..|++-.....+.+|+..+|+.............|+.+.| |.+.+..-+..|
T Consensus        99 ~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g  178 (1062)
T KOG1912|consen   99 ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG  178 (1062)
T ss_pred             hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc
Confidence            9888888754 68899999773   3 4566666778999999999999988876677788899999 677777777778


Q ss_pred             cEEEEeCCcccccCCCCCCCCccceEeeeccCC----------------C---------eEEEEEeeCCCCceEEEEeCC
Q 035621          148 VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND----------------S---------VTAITCCIGSFNSIIISCSMD  202 (387)
Q Consensus       148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~---------i~~~~~~~~~~~~~l~s~~~d  202 (387)
                      .+.+-+.....+..     ..++..+....|.+                .         ...++|+|.-  +-++-....
T Consensus       179 ~vl~~~~l~~sep~-----~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~--rn~lfi~~p  251 (1062)
T KOG1912|consen  179 FVLSCKDLGLSEPD-----VPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW--RNILFITFP  251 (1062)
T ss_pred             eEEEEeccCCCCCC-----CCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh--hceEEEEec
Confidence            77776653221111     01111111111111                0         1123456654  223333456


Q ss_pred             CcEEEEeCCCCcEEEEEecC-CceeEEEeCCCC--CeEEEEccCCcEEEEecccccccccccc--------ceeEeeccc
Q 035621          203 CTCKFWRLLNGTHLSTVTFP-CAIMGLALDPTE--TDFFAAGSDGLIYKGLLKYQSRQQMHKG--------QELVTLANR  271 (387)
Q Consensus       203 ~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~~~~~  271 (387)
                      ..+.++|++-..++..+..+ +.+.-+.+-|++  ..|++...||.+.+|-.+..........        .+......-
T Consensus       252 rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m  331 (1062)
T KOG1912|consen  252 RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPM  331 (1062)
T ss_pred             cceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeec
Confidence            78999999999898888744 344555565554  6799999999999998776433222111        111111001


Q ss_pred             ccccEEEEEEecC-CCEEEEEeCCCcEEEEECCCccEE
Q 035621          272 HDGVVVSVMMMNE-GKNLVSAAEDGSVYIWEIEKRQVV  308 (387)
Q Consensus       272 ~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~  308 (387)
                      .+..+......|. ...++.--.+|.+.+|.+.+|+.-
T Consensus       332 ~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~  369 (1062)
T KOG1912|consen  332 EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH  369 (1062)
T ss_pred             hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence            1122223333444 334444456788999999977553

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.41  E-value=2.1e-09  Score=87.64  Aligned_cols=230  Identities=13%  Similarity=0.174  Sum_probs=152.4

Q ss_pred             CCeEEEEEccCC----CcccccCCCCCeeeEEeccCCCEEEEecCC---CcEEEEeCCC--Ccee--EEccCCCCCeEEE
Q 035621           63 SGSVHLYNLWSS----TPLHNIPVPEPVAPLATTADGSYLFTGGLS---GNVYAISVPK--GDIL--RSFSAHDKPVSCL  131 (387)
Q Consensus        63 d~~v~vw~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~--~~~~--~~~~~~~~~v~~~  131 (387)
                      +.-|.+|++.+.    ..+......+.++-++|+|++++|+++..+   |.|..|.+..  |++.  ........+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            667999999733    334444566789999999999999988644   6677776653  5432  2222223445889


Q ss_pred             EEcCCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC----------eEEEEEeeCCCCceEEEEe
Q 035621          132 KISPDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS----------VTAITCCIGSFNSIIISCS  200 (387)
Q Consensus       132 ~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~l~s~~  200 (387)
                      ++++++++++++.. .|.|.++.++..-         ..........|.++          +....+.|++  ++|++..
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG---------~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~--~~l~v~D  163 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADG---------SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG--RYLVVPD  163 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCC---------ccccceeeeecCCCCCCccccCCccceeeeCCCC--CEEEEee
Confidence            99999999998874 5789999884321         11111122223333          6677778875  7887775


Q ss_pred             C-CCcEEEEeCCCCcEEEE----EecCCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecc--cc
Q 035621          201 M-DCTCKFWRLLNGTHLST----VTFPCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLAN--RH  272 (387)
Q Consensus       201 ~-d~~i~iwd~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~  272 (387)
                      . --.|.+|++..++....    ++.....+.+.|+|++++..+.++ +++|.+|........ ....+.+..+..  ..
T Consensus       164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~-~~~lQ~i~tlP~dF~g  242 (346)
T COG2706         164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK-FEELQTIDTLPEDFTG  242 (346)
T ss_pred             cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce-EEEeeeeccCccccCC
Confidence            4 24699999997764332    235678899999999999999887 999999999874111 000111111111  12


Q ss_pred             cccEEEEEEecCCCEEEEEeC-CCcEEEEECCC
Q 035621          273 DGVVVSVMMMNEGKNLVSAAE-DGSVYIWEIEK  304 (387)
Q Consensus       273 ~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~  304 (387)
                      ......+..++||++|.++.. ...|.+|.+..
T Consensus       243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             CCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            345678889999999988742 33788888765

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.41  E-value=9.8e-11  Score=100.73  Aligned_cols=187  Identities=18%  Similarity=0.202  Sum_probs=144.8

Q ss_pred             cCCCEEEEecCCCcEEEEeCCCCceeEEccCC---CCCeEEEEE--------------------cCCCCEEEEEeCCCcE
Q 035621           93 ADGSYLFTGGLSGNVYAISVPKGDILRSFSAH---DKPVSCLKI--------------------SPDGSLLISGGDDGVI  149 (387)
Q Consensus        93 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~v~~~~~--------------------~~~~~~l~~~~~dg~i  149 (387)
                      |...++|....||.+++||...++....+...   .+..++..|                    +.+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            45678999999999999999988876666421   233344444                    1233467888889999


Q ss_pred             EEEeCCcccccCCCCCCCCccceEee--eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCcee
Q 035621          150 ATVPIFQLVDEHTDDKNPDDLMLQKF--VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIM  226 (387)
Q Consensus       150 ~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~  226 (387)
                      .+|++            ..+.....+  ..|.+.|+++.++...  ..|.+++.|+.+..|+......++.+. .+..+.
T Consensus        83 ~~ys~------------~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~  148 (541)
T KOG4547|consen   83 LLYSV------------AGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS  148 (541)
T ss_pred             EEEEe------------cCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence            99998            344444444  4688999999887665  789999999999999999999888887 567789


Q ss_pred             EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC-----CCEEEEE-eCCCcEEEE
Q 035621          227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE-----GKNLVSA-AEDGSVYIW  300 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~s~-~~dg~i~iw  300 (387)
                      +++++||+..+++++  +.|.+||+++         .++...+.+|.++|.+++|..+     |.+++++ ..+..+.+|
T Consensus       149 sl~is~D~~~l~~as--~~ik~~~~~~---------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w  217 (541)
T KOG4547|consen  149 SLCISPDGKILLTAS--RQIKVLDIET---------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVW  217 (541)
T ss_pred             eEEEcCCCCEEEecc--ceEEEEEccC---------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEE
Confidence            999999999999886  5799999997         4556666799999999999876     6666654 456678888


Q ss_pred             ECCC
Q 035621          301 EIEK  304 (387)
Q Consensus       301 d~~~  304 (387)
                      -+..
T Consensus       218 ~v~~  221 (541)
T KOG4547|consen  218 VVEK  221 (541)
T ss_pred             EEEc
Confidence            7655

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.41  E-value=2.5e-11  Score=97.56  Aligned_cols=250  Identities=17%  Similarity=0.247  Sum_probs=173.6

Q ss_pred             ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc-cCCCcccccC--CCCCeeeEEeccCCCEEEEecCCC
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL-WSSTPLHNIP--VPEPVAPLATTADGSYLFTGGLSG  105 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~-~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg  105 (387)
                      ..+..++||.+.+++...-|.    ...+.+.+.|.++++|-- +.++.-..+.  -+.+++++.+.++...|++|-.+|
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~----e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ng   90 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPK----EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNG   90 (404)
T ss_pred             hhhhhhcCchhhhhhheeccC----CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecc
Confidence            446677889988888877772    223344789999999943 4455444454  457899999999999999999999


Q ss_pred             cEEEEeCC----CCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC
Q 035621          106 NVYAISVP----KGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS  181 (387)
Q Consensus       106 ~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (387)
                      ++.-+.+.    .....+....|...+..+-|+-...++++.+.|..+ .|...+           .+..+..+.- ..+
T Consensus        91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e-----------~~~~lg~Y~~-~~~  157 (404)
T KOG1409|consen   91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTE-----------SGNRLGGYNF-ETP  157 (404)
T ss_pred             eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeec-----------cCCcccceEe-ecc
Confidence            99888763    334556667899999999999988999999999876 343311           1111110000 000


Q ss_pred             eEEEEEeeCCCCceEEEEeCCCcEEEEeCC--CCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccc
Q 035621          182 VTAITCCIGSFNSIIISCSMDCTCKFWRLL--NGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQ  258 (387)
Q Consensus       182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  258 (387)
                      -+++.+.  -  .+...|...|.|..-.+.  .-.++.++. +...+.+++|.|....+++|..|..+.+||+.-.    
T Consensus       158 ~t~~~~d--~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~----  229 (404)
T KOG1409|consen  158 ASALQFD--A--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR----  229 (404)
T ss_pred             CCCCcee--e--EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC----
Confidence            0001000  0  123334444554443332  334555555 7789999999999999999999999999999762    


Q ss_pred             ccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccE
Q 035621          259 MHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  307 (387)
                          ......+.+|...|..++.-+.-+.+.+++.||.|.+|+.+..+.
T Consensus       230 ----~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  230 ----KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             ----cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence                233334558999999999888889999999999999999876543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.40  E-value=1.9e-09  Score=91.13  Aligned_cols=237  Identities=11%  Similarity=0.055  Sum_probs=150.5

Q ss_pred             ccCCCcEEEeeCC----------CCcEEEEeCCCCceeEeccCCCC-------CceeEEEcCccceeeeccccCCCCCeE
Q 035621            4 HLPCNEVILTSSP----------EGPITAYNPSSGAILAHFSGSRS-------PRRGLTFAGKPFIAASHISPTTGSGSV   66 (387)
Q Consensus         4 ~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~d~~v   66 (387)
                      +||||+.|+++..          +..|.+||+.+.+.+.++.....       ....++++|++..+.-  .--+.+..|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V--~n~~p~~~V  130 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLF--YQFSPSPAV  130 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEE--ecCCCCCEE
Confidence            7999998877655          78899999999999988864322       2347888887654321  113458999


Q ss_pred             EEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC-Ccee-EE---ccCCCCCeE-EEEEcC-CCCE
Q 035621           67 HLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPK-GDIL-RS---FSAHDKPVS-CLKISP-DGSL  139 (387)
Q Consensus        67 ~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~-~~---~~~~~~~v~-~~~~~~-~~~~  139 (387)
                      .+.|+.+++.+..+..+....-...+.+..++.+  .||......+.+ ++.. ..   +.....++. .-.|.+ ++++
T Consensus       131 ~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~--~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~  208 (352)
T TIGR02658       131 GVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHC--RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL  208 (352)
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEecCCccEEEe--ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence            9999999999998887664444444433333222  344444433322 2211 11   111000000 004455 8888


Q ss_pred             EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee-------ccCCCeEEEEEeeCCCCceEEEEe----------CC
Q 035621          140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-------AHNDSVTAITCCIGSFNSIIISCS----------MD  202 (387)
Q Consensus       140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~l~s~~----------~d  202 (387)
                      +++..+ |.|.+.|+.....       ........+.       -..+.+.-+++++++  +.++...          ..
T Consensus       209 ~~vs~e-G~V~~id~~~~~~-------~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg--~~lyV~~~~~~~~thk~~~  278 (352)
T TIGR02658       209 VWPTYT-GKIFQIDLSSGDA-------KFLPAIEAFTEAEKADGWRPGGWQQVAYHRAR--DRIYLLADQRAKWTHKTAS  278 (352)
T ss_pred             EEEecC-CeEEEEecCCCcc-------eecceeeeccccccccccCCCcceeEEEcCCC--CEEEEEecCCccccccCCC
Confidence            877777 9999999632110       0111111111       123344458888886  4444422          12


Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCC-eEEEEc-cCCcEEEEecccc
Q 035621          203 CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTET-DFFAAG-SDGLIYKGLLKYQ  254 (387)
Q Consensus       203 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~  254 (387)
                      +.|.++|..+++.+..+.....+..++++||++ .|++.. .++.|.++|..+.
T Consensus       279 ~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       279 RFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             CEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            579999999999999999999999999999999 888776 4788999998873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.40  E-value=4.3e-10  Score=99.13  Aligned_cols=257  Identities=14%  Similarity=0.141  Sum_probs=155.5

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCe
Q 035621            7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPV   86 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v   86 (387)
                      ++..++.++.+|.++.+|..+|+.+.................      ..++.++.++.+..||.++++.+..+....+.
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~------~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~  177 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVAN------GLVVVRTNDGRLTALDAATGERLWTYSRVTPA  177 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEEC------CEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence            466788888899999999999998876653222111111112      22333567899999999999887776644332


Q ss_pred             eeEE--ecc--CCCEEEEecCCCcEEEEeCCCCceeEEccCCCC----C---eEEEEEcC--CCCEEEEEeCCCcEEEEe
Q 035621           87 APLA--TTA--DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDK----P---VSCLKISP--DGSLLISGGDDGVIATVP  153 (387)
Q Consensus        87 ~~~~--~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~---v~~~~~~~--~~~~l~~~~~dg~i~iwd  153 (387)
                      ..+.  -+|  .+..++.+..+|.+..+|+++|+.+........    .   ...+.-+|  .+..++.++.+|.++.||
T Consensus       178 ~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d  257 (377)
T TIGR03300       178 LTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD  257 (377)
T ss_pred             eeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence            1110  011  234678888889999999999987654331100    0   00111111  345788888999999999


Q ss_pred             CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCc-eeEEEeC
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCA-IMGLALD  231 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~-v~~~~~~  231 (387)
                      ..            +++.+.....  ........  .  +..++.++.+|.+..+|..+++.+.... .... ..+... 
T Consensus       258 ~~------------tG~~~W~~~~--~~~~~p~~--~--~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-  318 (377)
T TIGR03300       258 LR------------SGRVLWKRDA--SSYQGPAV--D--DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV-  318 (377)
T ss_pred             CC------------CCcEEEeecc--CCccCceE--e--CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE-
Confidence            83            3333332221  11111221  1  3677788899999999999998877663 2221 222222 


Q ss_pred             CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEE-EEEEecCCCEEEEEeCCCcEEEE
Q 035621          232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV-SVMMMNEGKNLVSAAEDGSVYIW  300 (387)
Q Consensus       232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~iw  300 (387)
                       .+..+++++.+|.++++|..+++.        +.... .+...+. +..+. + +.|+.++.||.|+.|
T Consensus       319 -~g~~l~~~~~~G~l~~~d~~tG~~--------~~~~~-~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       319 -VGGYLVVGDFEGYLHWLSREDGSF--------VARLK-TDGSGIASPPVVV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             -ECCEEEEEeCCCEEEEEECCCCCE--------EEEEE-cCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence             467899999999999999887432        22221 2222222 22232 3 357788899998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.39  E-value=4.4e-10  Score=94.44  Aligned_cols=216  Identities=14%  Similarity=0.146  Sum_probs=139.2

Q ss_pred             cCCCcEEEeeCCCCcEEEEeCCCCceeEe-c--cCC---CCC--ceeEEEcCccc-eeeeccccCCCCCeEEEEEccCCC
Q 035621            5 LPCNEVILTSSPEGPITAYNPSSGAILAH-F--SGS---RSP--RRGLTFAGKPF-IAASHISPTTGSGSVHLYNLWSST   75 (387)
Q Consensus         5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~--~~~---~~~--v~~~~~~~~~~-~~~~~~~~~~~d~~v~vw~~~~~~   75 (387)
                      +.||+.++... .|.|++||..+...... +  .-.   ..+  +.-..|..+.. ..+.+++.. .-|...+.+...+-
T Consensus       275 nsDGkrIvFq~-~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~V-SRGkaFi~~~~~~~  352 (668)
T COG4946         275 NSDGKRIVFQN-AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALV-SRGKAFIMRPWDGY  352 (668)
T ss_pred             CCCCcEEEEec-CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEE-ecCcEEEECCCCCe
Confidence            56888877754 48899999876653221 1  101   000  11111111000 011111111 34566666654443


Q ss_pred             cccccCCCCCeeeEEeccCCCEEEEecCCC-cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621           76 PLHNIPVPEPVAPLATTADGSYLFTGGLSG-NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        76 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  154 (387)
                       ...+.++..|.-..+..+++-++.|..|| .+-+||.++++.. .+...-+.|.++..+|+|++++++.....|.+.|+
T Consensus       353 -~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidi  430 (668)
T COG4946         353 -SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDI  430 (668)
T ss_pred             -eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEe
Confidence             33445666788888888888899999999 8999999877754 45556788999999999999999999999999999


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC----cEEEEeCCCCcEEEEEecCCceeEEEe
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC----TCKFWRLLNGTHLSTVTFPCAIMGLAL  230 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~v~~~~~  230 (387)
                                  .++.....-+...+-|+...|+|++  ++++-+--+|    .|+++|+..++....-.....=.+-+|
T Consensus       431 ------------dngnv~~idkS~~~lItdf~~~~ns--r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaF  496 (668)
T COG4946         431 ------------DNGNVRLIDKSEYGLITDFDWHPNS--RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAF  496 (668)
T ss_pred             ------------cCCCeeEecccccceeEEEEEcCCc--eeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCccc
Confidence                        3444444444556789999999986  8888876665    689999988775444333333334455


Q ss_pred             CCCCCeEE
Q 035621          231 DPTETDFF  238 (387)
Q Consensus       231 ~~~~~~l~  238 (387)
                      .|++++|.
T Consensus       497 D~d~ryLY  504 (668)
T COG4946         497 DPDGRYLY  504 (668)
T ss_pred             CCCCcEEE
Confidence            55555544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.39  E-value=3.5e-12  Score=122.21  Aligned_cols=196  Identities=15%  Similarity=0.241  Sum_probs=158.5

Q ss_pred             CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                      -..|.++.-+|...+-++|+.||.+++|....++.+..++ .....|+.+.|+.+|+.+..+..||.+.+|..       
T Consensus      2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~------- 2280 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQA------- 2280 (2439)
T ss_pred             cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeeccc-------
Confidence            3678888889988899999999999999998888887765 23478999999999999999999999999987       


Q ss_pred             CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC---CCcEEEEeCCCCc---EEEEEecCCceeEEEeCCCCC
Q 035621          162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM---DCTCKFWRLLNGT---HLSTVTFPCAIMGLALDPTET  235 (387)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~  235 (387)
                            ..++....+.|........|--    ..+++++.   ++.+.+||..-..   .+. .-|...++++++-|...
T Consensus      2281 ------~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2281 ------SPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred             ------CCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcce
Confidence                  4667788888998888888764    45666543   6889999975432   222 34889999999999999


Q ss_pred             eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc
Q 035621          236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL  315 (387)
Q Consensus       236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  315 (387)
                      .+++|+.+|.|++||++.....              |.-..    +. ...+|++|+..|.++||++..-.++..+...+
T Consensus      2350 llisggr~G~v~l~D~rqrql~--------------h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQRQLR--------------HTFQA----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             EEEecCCcCcEEEeehHHHHHH--------------HHhhh----hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence            9999999999999999862211              22111    33 56799999999999999999998888887543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.38  E-value=2.5e-12  Score=113.11  Aligned_cols=288  Identities=17%  Similarity=0.156  Sum_probs=192.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCC-ceeEeccCCCCC--ceeEEEcCccceeeeccccCCCCCeEEEEEccCC--Cc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSG-AILAHFSGSRSP--RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--TP   76 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~~   76 (387)
                      +..+|.|+-+|.++.-| +.+-|+... .+.+-+ .|..+  |-...|++...-. .+++ ......-.+|++...  +.
T Consensus        30 ~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~-~wiV-sts~qkaiiwnlA~ss~~a  105 (1081)
T KOG0309|consen   30 VSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKP-YWIV-STSNQKAIIWNLAKSSSNA  105 (1081)
T ss_pred             eeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCc-eeEE-ecCcchhhhhhhhcCCccc
Confidence            45688899899988876 556676543 333333 24443  6677787632211 1122 334445567887433  22


Q ss_pred             cc--ccCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621           77 LH--NIPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATV  152 (387)
Q Consensus        77 ~~--~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  152 (387)
                      +.  ...|...++.+.|.|+. ..+++++.|-.+..||+++. .++..+..-...-..++|+.....+.+.+..+.|.+|
T Consensus       106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw  185 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW  185 (1081)
T ss_pred             eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence            32  23366789999999954 57899999999999999876 3455555455566789998855556666777889999


Q ss_pred             eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--EEEEEecCCceeEEEe
Q 035621          153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT--HLSTVTFPCAIMGLAL  230 (387)
Q Consensus       153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~  230 (387)
                      |++.           ...++..+++|...|+.+.|.... ...+.+++.|++|++||.....  ..+.+....++..-.+
T Consensus       186 d~r~-----------gs~pl~s~K~~vs~vn~~~fnr~~-~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~  253 (1081)
T KOG0309|consen  186 DLRK-----------GSTPLCSLKGHVSSVNSIDFNRFK-YSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY  253 (1081)
T ss_pred             eccC-----------CCcceEEecccceeeehHHHhhhh-hhhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence            9964           566788888999999999886553 3578899999999999987543  3444556778888888


Q ss_pred             CCCCCeEEEE--ccCCcEEEEeccccccc-cccccceeEeecccccccEEEEEEecCC----------CEEEEEeCCCcE
Q 035621          231 DPTETDFFAA--GSDGLIYKGLLKYQSRQ-QMHKGQELVTLANRHDGVVVSVMMMNEG----------KNLVSAAEDGSV  297 (387)
Q Consensus       231 ~~~~~~l~~~--~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~s~~~dg~i  297 (387)
                      -|-|.-.+.-  -.+..+.+++-+..... ........+..+.+|...|....|-..+          -.|+|-+.|..+
T Consensus       254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l  333 (1081)
T KOG0309|consen  254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL  333 (1081)
T ss_pred             cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence            8866543332  12224444444433222 2223445556667999998887775322          279999999999


Q ss_pred             EEEECCCc
Q 035621          298 YIWEIEKR  305 (387)
Q Consensus       298 ~iwd~~~~  305 (387)
                      ++|-+.+.
T Consensus       334 rlWpI~~~  341 (1081)
T KOG0309|consen  334 RLWPIDSQ  341 (1081)
T ss_pred             EeeeccHH
Confidence            99998753

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.37  E-value=3.2e-10  Score=88.30  Aligned_cols=224  Identities=8%  Similarity=0.013  Sum_probs=149.2

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeE-eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-CCe
Q 035621            9 EVILTSSPEGPITAYNPSSGAILA-HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-EPV   86 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~~v   86 (387)
                      .+||.|+..|...+|...+.+... ....|...|   ............+..++.|.++++.+++-+........+ -.+
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v---~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~  161 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDV---TLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQ  161 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccch---hhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccce
Confidence            578999999999999998665432 223333322   222211112223344778889998888654333322222 248


Q ss_pred             eeEEeccCCCEEEEecCCCcEEEEeCCCC-cee-E-EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621           87 APLATTADGSYLFTGGLSGNVYAISVPKG-DIL-R-SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        87 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~-~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      ..++++++++++++.+....|..|.+... +.+ . ........=.+..|+.....++++..||++.|||++....+   
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp---  238 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP---  238 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc---
Confidence            89999999999999999999999988643 222 2 12223344567889998899999999999999999764322   


Q ss_pred             CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC---------CceeEEEeCCCC
Q 035621          164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP---------CAIMGLALDPTE  234 (387)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------~~v~~~~~~~~~  234 (387)
                          ......+-..|.+.+..+.|++.+.-.+|+..-.-+.+.+.|++++...+.+..+         ..+....|+.++
T Consensus       239 ----m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n  314 (344)
T KOG4532|consen  239 ----MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN  314 (344)
T ss_pred             ----hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence                1122233345899999999998765567777767789999999998766555421         125566666666


Q ss_pred             CeEEEEcc
Q 035621          235 TDFFAAGS  242 (387)
Q Consensus       235 ~~l~~~~~  242 (387)
                      ..+.+.+.
T Consensus       315 ~s~~v~~e  322 (344)
T KOG4532|consen  315 ESNDVKNE  322 (344)
T ss_pred             cccccccc
Confidence            55555544

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=2.9e-10  Score=101.02  Aligned_cols=301  Identities=11%  Similarity=0.038  Sum_probs=194.9

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC-CCCee
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV-PEPVA   87 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~-~~~v~   87 (387)
                      -+||++...|.|.+||...+..+..++.|..++..++|-+.....-..++.-.....+.+|+..+|+....+.- ++...
T Consensus        80 lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs  159 (1062)
T KOG1912|consen   80 LLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS  159 (1062)
T ss_pred             eeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee
Confidence            46788888999999999999999999999999999999874433323334456778999999999999887774 45667


Q ss_pred             eEEecc-CCCEEEEecCCCcEEEEeCCC-------CceeEEccCCCC----------------C---------eEEEEEc
Q 035621           88 PLATTA-DGSYLFTGGLSGNVYAISVPK-------GDILRSFSAHDK----------------P---------VSCLKIS  134 (387)
Q Consensus        88 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~----------------~---------v~~~~~~  134 (387)
                      |+.+.| |.+.+..-+..|.+.+-+.-.       ++..+.-..|..                .         ...++|+
T Consensus       160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~  239 (1062)
T KOG1912|consen  160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS  239 (1062)
T ss_pred             eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence            799988 566666666677666665411       122222222211                0         1135678


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc
Q 035621          135 PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT  214 (387)
Q Consensus       135 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  214 (387)
                      |.-+.++-....+.+.++|+            +-..++....-..+.+.-+.+.|++....|++...||.+.+|--+.-.
T Consensus       240 p~~rn~lfi~~prellv~dl------------e~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~  307 (1062)
T KOG1912|consen  240 PHWRNILFITFPRELLVFDL------------EYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP  307 (1062)
T ss_pred             hhhhceEEEEeccceEEEcc------------hhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence            86555555566788999999            455566666666777778888999888899999999999999755411


Q ss_pred             ----------------EEEEEe--cCCceeEEEeCCC-CCeEEEEccCCcEEEEeccccccccccc-------------c
Q 035621          215 ----------------HLSTVT--FPCAIMGLALDPT-ETDFFAAGSDGLIYKGLLKYQSRQQMHK-------------G  262 (387)
Q Consensus       215 ----------------~~~~~~--~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~  262 (387)
                                      ....+.  ....+......|. ...++.--.+|...+|.+.++.......             .
T Consensus       308 ~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~  387 (1062)
T KOG1912|consen  308 TEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNL  387 (1062)
T ss_pred             ccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccC
Confidence                            111111  0111222233343 3444444567778888877532211100             0


Q ss_pred             c---------eeEeecccccccEEEEEEec-----------CC-------CEEEEEeCCCcEEEEECCCccEEEEeeccc
Q 035621          263 Q---------ELVTLANRHDGVVVSVMMMN-----------EG-------KNLVSAAEDGSVYIWEIEKRQVVMVLKNEL  315 (387)
Q Consensus       263 ~---------~~~~~~~~~~~~v~~~~~s~-----------~~-------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  315 (387)
                      .         .......+|....++....|           .+       .++|.|...|+|.++|+.++..-+.+..|.
T Consensus       388 ~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht  467 (1062)
T KOG1912|consen  388 STKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHT  467 (1062)
T ss_pred             ceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccc
Confidence            0         00011234555555444333           22       267889999999999999999988888774


Q ss_pred             CCCceeE
Q 035621          316 AGSISEM  322 (387)
Q Consensus       316 ~~~v~~~  322 (387)
                       +.|.++
T Consensus       468 -~~Vkgl  473 (1062)
T KOG1912|consen  468 -SLVKGL  473 (1062)
T ss_pred             -cceeee
Confidence             367666

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.35  E-value=3.5e-09  Score=93.74  Aligned_cols=281  Identities=12%  Similarity=0.105  Sum_probs=167.0

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCC-Ccee----EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRS-PRRG----LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~----~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      .+..+++++.+|.+.-+|.++|+.+........ ....    ..++....+....++.++.++.+..+|.++|+.+...+
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            356777778889999999999998876543221 0000    00111111122233446788999999999999988887


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEE-EEEcC--CCCEEEEEeCCCcEEEEeCCccc
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSC-LKISP--DGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~-~~~~~--~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                      ....+.+--.- .+..++++..++.+..+|.++|+.+.........+.. ..-+|  .+..++.++.+|.+..+|..+. 
T Consensus       148 ~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G-  225 (394)
T PRK11138        148 VAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQG-  225 (394)
T ss_pred             CCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCC-
Confidence            65544321111 2446777888999999999999988776532111100 00112  2335777788888888887432 


Q ss_pred             ccCCCCCCCCccceEeeeccC-------CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeC
Q 035621          159 DEHTDDKNPDDLMLQKFVAHN-------DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALD  231 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~  231 (387)
                                 ..+-......       .....+..+|--.+..++.++.+|.+..+|..+++.+........ ..+  .
T Consensus       226 -----------~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~--~  291 (394)
T PRK11138        226 -----------QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDF--A  291 (394)
T ss_pred             -----------hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCc--E
Confidence                       1111110000       000001111111135677777899999999999998776653321 111  1


Q ss_pred             CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEe
Q 035621          232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVL  311 (387)
Q Consensus       232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (387)
                      ..+..+++++.+|.++.+|..++........  .     .+ ....+...  .+.+|+.++.||.|...|..+|+.+.+.
T Consensus       292 ~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~-----~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        292 VDGGRIYLVDQNDRVYALDTRGGVELWSQSD--L-----LH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             EECCEEEEEcCCCeEEEEECCCCcEEEcccc--c-----CC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            2467888888999999999987543221100  0     00 11111122  2457788899999999999999999887


Q ss_pred             ec
Q 035621          312 KN  313 (387)
Q Consensus       312 ~~  313 (387)
                      +-
T Consensus       362 ~~  363 (394)
T PRK11138        362 KV  363 (394)
T ss_pred             Ec
Confidence            64

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.33  E-value=8.1e-10  Score=87.17  Aligned_cols=224  Identities=14%  Similarity=0.104  Sum_probs=153.7

Q ss_pred             CCCeEEEEEccCCCccc--ccC--CCCCeeeEEecc---CCC-EEEEecCCCcEEEEeCCCCceeEEccCCC------CC
Q 035621           62 GSGSVHLYNLWSSTPLH--NIP--VPEPVAPLATTA---DGS-YLFTGGLSGNVYAISVPKGDILRSFSAHD------KP  127 (387)
Q Consensus        62 ~d~~v~vw~~~~~~~~~--~~~--~~~~v~~~~~~~---~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~  127 (387)
                      ..|.+.+|++.+.+...  .++  ....+..+.|..   +|. .++-+...|.|.+|.....+....+++-.      ..
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            56789999998776554  222  234566666653   444 45666778999999876554444443221      12


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEE
Q 035621          128 VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKF  207 (387)
Q Consensus       128 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~i  207 (387)
                      -.++.|++.+..++++..+|.+.+-+...          ..-..++.++.|.-+.....|+... .+++++|+.|+.+..
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~----------~~le~vq~wk~He~E~Wta~f~~~~-pnlvytGgDD~~l~~  192 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETE----------MVLEKVQTWKVHEFEAWTAKFSDKE-PNLVYTGGDDGSLSC  192 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecce----------eeeeecccccccceeeeeeecccCC-CceEEecCCCceEEE
Confidence            35778899899999999999998555421          1223445788999999999997764 589999999999999


Q ss_pred             EeCCC-CcEEEE--EecCCceeEEEeCC-CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621          208 WRLLN-GTHLST--VTFPCAIMGLALDP-TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN  283 (387)
Q Consensus       208 wd~~~-~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  283 (387)
                      ||++. ++.+..  ..|...|.++.-+| .+.++++|+.|-.|++||.++..       +++...  .-.+.|+.+.++|
T Consensus       193 ~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-------kPl~~~--~v~GGVWRi~~~p  263 (339)
T KOG0280|consen  193 WDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-------KPLFKA--KVGGGVWRIKHHP  263 (339)
T ss_pred             EEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-------CccccC--ccccceEEEEecc
Confidence            99993 333333  22778899988886 56899999999999999999632       222211  3458899999998


Q ss_pred             CCC--EEEEEeCCCcEEEEECCCcc
Q 035621          284 EGK--NLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       284 ~~~--~l~s~~~dg~i~iwd~~~~~  306 (387)
                      .-.  .|+++ .-.-.+|-+.+.+.
T Consensus       264 ~~~~~lL~~C-Mh~G~ki~~~~~~~  287 (339)
T KOG0280|consen  264 EIFHRLLAAC-MHNGAKILDSSDKV  287 (339)
T ss_pred             hhhhHHHHHH-HhcCceEEEecccc
Confidence            533  34444 33346777766543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.33  E-value=8.2e-10  Score=86.06  Aligned_cols=248  Identities=14%  Similarity=0.036  Sum_probs=155.9

Q ss_pred             eeEEEcCccce-eeeccccCCCCCeEEEEEccCCCcccccC--CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCce
Q 035621           42 RGLTFAGKPFI-AASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDI  117 (387)
Q Consensus        42 ~~~~~~~~~~~-~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~  117 (387)
                      +.+.|.|...+ -...++.|+..|...+|...+.+....+-  +...|.-..=.. ....+..++.|.++++.+++-+..
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence            34556553222 22345568899999999987664332221  222221111111 122466677888888888765433


Q ss_pred             eEEccCCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceE-eeeccCCCeEEEEEeeCCCCc
Q 035621          118 LRSFSAHDK--PVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQ-KFVAHNDSVTAITCCIGSFNS  194 (387)
Q Consensus       118 ~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~  194 (387)
                      ....  |..  .+.+++++++++++++.+....|-.|.+.+.          ...... ......+.-.+..|+..  ..
T Consensus       151 ~~~~--h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~----------sey~~~~~~a~t~D~gF~~S~s~~--~~  216 (344)
T KOG4532|consen  151 KFAV--HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDE----------SEYIENIYEAPTSDHGFYNSFSEN--DL  216 (344)
T ss_pred             ccee--eccccceeeeEEcCCCceEEEecCCCcceEEEeCCc----------cceeeeeEecccCCCceeeeeccC--cc
Confidence            2222  332  3789999999999999999999999988431          112222 22233344456666655  48


Q ss_pred             eEEEEeCCCcEEEEeCCCCcEEE-EEe-----cCCceeEEEeCCCC--CeEEEEccCCcEEEEeccccccccccccceeE
Q 035621          195 IIISCSMDCTCKFWRLLNGTHLS-TVT-----FPCAIMGLALDPTE--TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELV  266 (387)
Q Consensus       195 ~l~s~~~d~~i~iwd~~~~~~~~-~~~-----~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  266 (387)
                      .+|++..||++.|||++...... ...     |.+.+..+.|++.|  .+|+..-.-+.+.+.|+++....+.....+-.
T Consensus       217 ~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~  296 (344)
T KOG4532|consen  217 QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV  296 (344)
T ss_pred             eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc
Confidence            99999999999999999754332 221     66889999999876  45666667889999999987655433222221


Q ss_pred             eeccccc-ccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621          267 TLANRHD-GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       267 ~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  306 (387)
                       . ..|. ..|..-.|+.++.-+.+..++ .+.=|++.+..
T Consensus       297 -~-~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs  334 (344)
T KOG4532|consen  297 -E-RKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS  334 (344)
T ss_pred             -c-ccccccccccccccCCCcccccccch-hhheeeccccc
Confidence             1 2343 348888898888777766655 45666665543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.29  E-value=1e-08  Score=100.36  Aligned_cols=243  Identities=12%  Similarity=0.056  Sum_probs=150.2

Q ss_pred             CCCCCeEEEEEccCCCcccccCC---------------CCCeeeEEeccCCCEEEEec-CCCcEEEEeCCCCceeEEccC
Q 035621           60 TTGSGSVHLYNLWSSTPLHNIPV---------------PEPVAPLATTADGSYLFTGG-LSGNVYAISVPKGDILRSFSA  123 (387)
Q Consensus        60 ~~~d~~v~vw~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  123 (387)
                      -+..+.|++||.. +..+..+..               -.....+++.++++.|+++. .++.|+.+|+.++. +.++.+
T Consensus       586 Ds~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag  663 (1057)
T PLN02919        586 DSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAG  663 (1057)
T ss_pred             ECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEec
Confidence            4677889999975 333322221               12357899999888766654 45689999987654 333311


Q ss_pred             C-----------------CCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCC-CCC---CCCccceEeeeccCCC
Q 035621          124 H-----------------DKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHT-DDK---NPDDLMLQKFVAHNDS  181 (387)
Q Consensus       124 ~-----------------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~  181 (387)
                      -                 -.....++++| ++.++++.+.++.|++||......... ...   ......  .....-..
T Consensus       664 ~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~--~~~~~~~~  741 (1057)
T PLN02919        664 NGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSS--GTSTSFAQ  741 (1057)
T ss_pred             cCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCc--cccccccC
Confidence            0                 12346899999 566667777888999999843211000 000   000000  00011123


Q ss_pred             eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE-----------ec-----------CCceeEEEeCCCCCeEEE
Q 035621          182 VTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV-----------TF-----------PCAIMGLALDPTETDFFA  239 (387)
Q Consensus       182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----------~~-----------~~~v~~~~~~~~~~~l~~  239 (387)
                      ...++++|++ +.++++-+.++.|++||+.++......           ..           -.....++++++|+.+++
T Consensus       742 P~GIavspdG-~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA  820 (1057)
T PLN02919        742 PSGISLSPDL-KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA  820 (1057)
T ss_pred             ccEEEEeCCC-CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence            4578888875 236667777899999999876532111           00           013468999999998888


Q ss_pred             EccCCcEEEEecccccccccccccee----EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccE
Q 035621          240 AGSDGLIYKGLLKYQSRQQMHKGQEL----VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       240 ~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  307 (387)
                      -..++.|++||..+............    .....+.-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus       821 Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        821 DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            88899999999876432211100000    000112234678999999999999988999999999999875

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.28  E-value=2.2e-08  Score=96.30  Aligned_cols=289  Identities=14%  Similarity=0.138  Sum_probs=172.5

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCcee------------------------EeccC---------------------
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAIL------------------------AHFSG---------------------   36 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~------------------------~~~~~---------------------   36 (387)
                      ++||||+.+|+..+.++++.+-+. +.+++                        ..|+|                     
T Consensus       126 ~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~  204 (928)
T PF04762_consen  126 ASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEG  204 (928)
T ss_pred             EEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccC
Confidence            579999999999998888887642 11111                        11111                     


Q ss_pred             ---CCCCceeEEEcCccceeeeccc-cCC-CCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecC---CCcE
Q 035621           37 ---SRSPRRGLTFAGKPFIAASHIS-PTT-GSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGL---SGNV  107 (387)
Q Consensus        37 ---~~~~v~~~~~~~~~~~~~~~~~-~~~-~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---dg~i  107 (387)
                         +...-..+.|-+|+.+.+...+ ... .-..++||+-+ |.....-+ ..+--.+++|.|.|++||+...   ...|
T Consensus       205 ~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~V  283 (928)
T PF04762_consen  205 KLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDV  283 (928)
T ss_pred             ccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEE
Confidence               1122345778887766554322 122 24789999864 54333332 2233457899999999998764   3467


Q ss_pred             EEEeCCCCceeEE----ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec-cCCCe
Q 035621          108 YAISVPKGDILRS----FSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA-HNDSV  182 (387)
Q Consensus       108 ~i~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i  182 (387)
                      .+|.- +|-.-..    +......|..+.|++|+..|+....|. |.+|-..+.          .....+.+.. ....+
T Consensus       284 vFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY----------HWYLKqei~~~~~~~~  351 (928)
T PF04762_consen  284 VFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY----------HWYLKQEIRFSSSESV  351 (928)
T ss_pred             EEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC----------EEEEEEEEEccCCCCC
Confidence            77773 4432222    223456899999999999999987665 999987432          1112222221 12234


Q ss_pred             EEEEEeeCCCCceEEEEeCCCcEEEEeCC----CC----------------c----------------EEEEEecCCcee
Q 035621          183 TAITCCIGSFNSIIISCSMDCTCKFWRLL----NG----------------T----------------HLSTVTFPCAIM  226 (387)
Q Consensus       183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~----------------~----------------~~~~~~~~~~v~  226 (387)
                      ..+.|+|.. ...|...+.+|.+..+++.    .+                .                ....+..+.+|.
T Consensus       352 ~~~~Wdpe~-p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~  430 (928)
T PF04762_consen  352 NFVKWDPEK-PLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVN  430 (928)
T ss_pred             CceEECCCC-CCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcE
Confidence            447777764 3445555554555444321    11                0                123344677899


Q ss_pred             EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEe---------ecccccccEEEEEEecCCCEEEEEeCC---
Q 035621          227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVT---------LANRHDGVVVSVMMMNEGKNLVSAAED---  294 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~s~~~~~l~s~~~d---  294 (387)
                      +++|++++..+++-..||.+.+|..................         ........+..++|..+..+++....+   
T Consensus       431 ~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (928)
T PF04762_consen  431 DVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQ  510 (928)
T ss_pred             EEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCccc
Confidence            99999999889999999999999976543321100000000         011124467888998877766665554   


Q ss_pred             CcEEEEECCCc
Q 035621          295 GSVYIWEIEKR  305 (387)
Q Consensus       295 g~i~iwd~~~~  305 (387)
                      ..+.++++...
T Consensus       511 ~~i~~~~~~~~  521 (928)
T PF04762_consen  511 SKIVLVDIDDS  521 (928)
T ss_pred             ceEEEEEeccC
Confidence            67888887543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.28  E-value=6.5e-11  Score=97.20  Aligned_cols=167  Identities=13%  Similarity=0.115  Sum_probs=116.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCC-ceEEEEeCCCcEE
Q 035621          128 VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFN-SIIISCSMDCTCK  206 (387)
Q Consensus       128 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~d~~i~  206 (387)
                      ...+..+|.+++++++..+....+++.+....        ..+....... ...-+++.+..+... ...-..+....+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~--------~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~d  135 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK--------GAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFD  135 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC--------cceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeee
Confidence            44556778888999998888887887743211        1122222211 122233444333211 1222333445666


Q ss_pred             EEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC
Q 035621          207 FWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK  286 (387)
Q Consensus       207 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  286 (387)
                      +|....+.+...+.|-+.++.++++||+++|+++..|..|++-....        ...+..+.-+|..-|..++.-++ .
T Consensus       136 i~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa--------~f~IesfclGH~eFVS~isl~~~-~  206 (390)
T KOG3914|consen  136 ILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA--------TFVIESFCLGHKEFVSTISLTDN-Y  206 (390)
T ss_pred             eecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc--------ccchhhhccccHhheeeeeeccC-c
Confidence            77666677777777889999999999999999999999999977655        33444555689999999999765 5


Q ss_pred             EEEEEeCCCcEEEEECCCccEEEEee
Q 035621          287 NLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       287 ~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      .|++||.|++|++||+.+|+++..+.
T Consensus       207 ~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  207 LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eeeecCCCCcEEEEecccCCcccccc
Confidence            68999999999999999999987765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.28  E-value=6.2e-09  Score=85.66  Aligned_cols=218  Identities=16%  Similarity=0.221  Sum_probs=141.1

Q ss_pred             CCeEEEEEccCCCcccccCCCCCeeeEE--eccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEE
Q 035621           63 SGSVHLYNLWSSTPLHNIPVPEPVAPLA--TTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLL  140 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  140 (387)
                      +|.|..||..+++.+.............  ..+++..+++++.++.|..||..+|+.+..+.. ...+.... ...+..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence            6889999999999888876533333333  334667788888999999999999998877764 22222111 2245567


Q ss_pred             EEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-eccC---CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE
Q 035621          141 ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHN---DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL  216 (387)
Q Consensus       141 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  216 (387)
                      ++++.++.++.+|.            .++..+... ....   ...........  +..++.+..++.|..+|+++|+.+
T Consensus        80 ~v~~~~~~l~~~d~------------~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~  145 (238)
T PF13360_consen   80 YVGTSDGSLYALDA------------KTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKTGKLL  145 (238)
T ss_dssp             EEEETTSEEEEEET------------TTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEEEEEETTTTEEE
T ss_pred             ccccceeeeEeccc------------CCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcEEEEecCCCcEE
Confidence            77778889999997            455555552 2221   11112222222  367888888999999999999998


Q ss_pred             EEEecCCc-----------e-eEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621          217 STVTFPCA-----------I-MGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE  284 (387)
Q Consensus       217 ~~~~~~~~-----------v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  284 (387)
                      .......+           + ..+.+. ++ .+++++.++.+..+|+.++..        .-..  . ...+.. ....+
T Consensus       146 w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~--------~w~~--~-~~~~~~-~~~~~  211 (238)
T PF13360_consen  146 WKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEK--------LWSK--P-ISGIYS-LPSVD  211 (238)
T ss_dssp             EEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEE--------EEEE--C-SS-ECE-CEECC
T ss_pred             EEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCE--------EEEe--c-CCCccC-Cceee
Confidence            88874321           1 222333 34 788888888644448887432        1111  1 111222 13467


Q ss_pred             CCEEEEEeCCCcEEEEECCCccEEEE
Q 035621          285 GKNLVSAAEDGSVYIWEIEKRQVVMV  310 (387)
Q Consensus       285 ~~~l~s~~~dg~i~iwd~~~~~~~~~  310 (387)
                      +..|+.++.++.|..||+++|+.+.+
T Consensus       212 ~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  212 GGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             CTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            78888888999999999999998764

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.28  E-value=7.1e-09  Score=99.63  Aligned_cols=284  Identities=15%  Similarity=0.165  Sum_probs=174.9

Q ss_pred             cccCCCcEEEeeCCCCcEEEE----eCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc------
Q 035621            3 HHLPCNEVILTSSPEGPITAY----NPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW------   72 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~------   72 (387)
                      +|-++...++.+..+|.|.+.    +..+.+. ...-.-...|.+++|+|+..+.+-    .+.++++.+-+-.      
T Consensus        82 ~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~----vT~~~~l~~mt~~fd~i~E  156 (928)
T PF04762_consen   82 QYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLAL----VTGEGNLLLMTRDFDPISE  156 (928)
T ss_pred             EeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEE----EeCCCEEEEEeccceEEEE
Confidence            455677778888889999999    5543332 112223456999999997665543    5556666654321      


Q ss_pred             ---------C--------CCcccccC-------------------------CCCCeeeEEeccCCCEEEEecC---C---
Q 035621           73 ---------S--------STPLHNIP-------------------------VPEPVAPLATTADGSYLFTGGL---S---  104 (387)
Q Consensus        73 ---------~--------~~~~~~~~-------------------------~~~~v~~~~~~~~~~~l~~~~~---d---  104 (387)
                               .        |+...+|.                         ....-..++|-.||.++|+.+.   .   
T Consensus       157 ~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~  236 (928)
T PF04762_consen  157 VPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSR  236 (928)
T ss_pred             eecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCce
Confidence                     0        00001110                         1123456889999999998864   2   


Q ss_pred             CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC
Q 035621          105 GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD---DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS  181 (387)
Q Consensus       105 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (387)
                      ..+++|+- .|++..+-+.-.+--.+++|.|.|+++++...   ...|.+|.-..+         ..+.....+......
T Consensus       237 R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL---------rhgeF~l~~~~~~~~  306 (928)
T PF04762_consen  237 RVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL---------RHGEFTLRFDPEEEK  306 (928)
T ss_pred             eEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc---------EeeeEecCCCCCCce
Confidence            47999995 47665554444444467899999999998865   234566643111         111111122234567


Q ss_pred             eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--EEEEEe--cCCceeEEEeCCCC-CeEEEEccCCcEEEEecccccc
Q 035621          182 VTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT--HLSTVT--FPCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSR  256 (387)
Q Consensus       182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~--~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~  256 (387)
                      |..+.|++++  ..|+..-.|. |.+|-..+-.  ..+.+.  ....+..+.|+|.. ..|.+.+.+|.+..+++.....
T Consensus       307 v~~l~Wn~ds--~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~  383 (928)
T PF04762_consen  307 VIELAWNSDS--EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS  383 (928)
T ss_pred             eeEEEECCCC--CEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE
Confidence            8999999886  8888876555 9999887754  223333  33446669999965 4577777767776655532111


Q ss_pred             cc------------cccc--------------ceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          257 QQ------------MHKG--------------QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       257 ~~------------~~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      ..            ...+              ++.....-.-..+|.+++|++++..+++-..||.|.+|....
T Consensus       384 ~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  384 RSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             ecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence            00            0001              111111113456799999999998899999999999998544

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=3.7e-11  Score=96.68  Aligned_cols=156  Identities=19%  Similarity=0.271  Sum_probs=123.8

Q ss_pred             ccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-----ceeEEccCCCCCeEEEE
Q 035621           58 SPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-----DILRSFSAHDKPVSCLK  132 (387)
Q Consensus        58 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~~~  132 (387)
                      ++.+.+..+-+-|++++-. +.+...+.|.++.|...+++++.|..+|.|..+|++.+     .+...+ -|...|+++.
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq  305 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQ  305 (425)
T ss_pred             ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhh
Confidence            4466777888889887743 34446788999999999999999999999999999765     334444 4889999998


Q ss_pred             EcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC
Q 035621          133 ISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL  211 (387)
Q Consensus       133 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  211 (387)
                      .-. ++++|++.+.+|+|++||++..         ..+.-+.++.+|...-..+-++-+.....+++++.|...+||.++
T Consensus       306 ~Lq~s~q~LmaS~M~gkikLyD~R~~---------K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  306 ILQFSQQKLMASDMTGKIKLYDLRAT---------KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             hhccccceEeeccCcCceeEeeehhh---------hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence            776 7889999999999999999543         223347888888776666655555556788899999999999999


Q ss_pred             CCcEEEEEecCCc
Q 035621          212 NGTHLSTVTFPCA  224 (387)
Q Consensus       212 ~~~~~~~~~~~~~  224 (387)
                      .+..+.+++.+..
T Consensus       377 ~ghLl~tipf~~s  389 (425)
T KOG2695|consen  377 SGHLLCTIPFPYS  389 (425)
T ss_pred             cCceeeccCCCCc
Confidence            9999999986544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.26  E-value=9.7e-08  Score=78.83  Aligned_cols=215  Identities=12%  Similarity=0.133  Sum_probs=138.0

Q ss_pred             eEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621           88 PLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKIS-PDGSLLISGGDDGVIATVPIFQLVDEHTDDK  165 (387)
Q Consensus        88 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  165 (387)
                      +.+|.+ ++.++++--..+.|+.|+..+++... +....  ...+++. +++ .++.+...+ +.++|...         
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~---------   69 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDT---------   69 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTT---------
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCC---------
Confidence            567887 66666666678899999988776533 32222  7778888 565 455555544 45558722         


Q ss_pred             CCCccceEeee--c-cCCCeEEEEEeeCCCCceEEEEeCC--------CcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621          166 NPDDLMLQKFV--A-HNDSVTAITCCIGSFNSIIISCSMD--------CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE  234 (387)
Q Consensus       166 ~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  234 (387)
                       .....+....  . .....+.+++.+++  ++.++....        |.|..++.. ++.......-...+.++|+|++
T Consensus        70 -g~~~~~~~~~~~~~~~~~~ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg  145 (246)
T PF08450_consen   70 -GKVTVLADLPDGGVPFNRPNDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDG  145 (246)
T ss_dssp             -TEEEEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTS
T ss_pred             -CcEEEEeeccCCCcccCCCceEEEcCCC--CEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcc
Confidence             1112222221  1 33567788888874  777766543        457777776 5554444455678899999999


Q ss_pred             CeEEE-EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621          235 TDFFA-AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       235 ~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      +.|++ -+..+.|+.+++........  ............+..-.+++..+|++.++....+.|.+++.+ |+++..+..
T Consensus       146 ~~lyv~ds~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~  222 (246)
T PF08450_consen  146 KTLYVADSFNGRIWRFDLDADGGELS--NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL  222 (246)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTCCEE--EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-
T ss_pred             hheeecccccceeEEEecccccccee--eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC
Confidence            98765 46688899999875332110  011111111222458899999999988888888999999987 999998887


Q ss_pred             ccCCCceeEEE
Q 035621          314 ELAGSISEMVI  324 (387)
Q Consensus       314 ~~~~~v~~~~~  324 (387)
                      ... .+++++|
T Consensus       223 p~~-~~t~~~f  232 (246)
T PF08450_consen  223 PVP-RPTNCAF  232 (246)
T ss_dssp             SSS-SEEEEEE
T ss_pred             CCC-CEEEEEE
Confidence            634 8999999

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.24  E-value=1.9e-08  Score=98.48  Aligned_cols=244  Identities=16%  Similarity=0.127  Sum_probs=150.2

Q ss_pred             ccccCC-CcEEEeeCCCCcEEEEeCCCCceeEeccC--C------------CCCceeEEEcCccc--eeeeccccCCCCC
Q 035621            2 LHHLPC-NEVILTSSPEGPITAYNPSSGAILAHFSG--S------------RSPRRGLTFAGKPF--IAASHISPTTGSG   64 (387)
Q Consensus         2 l~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~------------~~~v~~~~~~~~~~--~~~~~~~~~~~d~   64 (387)
                      ++++++ ++++++-+.++.|.+||.. +..+..+.+  .            -.....+++.++..  +.+     -...+
T Consensus       573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa-----Dt~n~  646 (1057)
T PLN02919        573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA-----DTENH  646 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE-----eCCCc
Confidence            356654 6677777788899999975 554444422  1            12357788876432  222     34567


Q ss_pred             eEEEEEccCCCcccccC------------------CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccC--
Q 035621           65 SVHLYNLWSSTPLHNIP------------------VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSA--  123 (387)
Q Consensus        65 ~v~vw~~~~~~~~~~~~------------------~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--  123 (387)
                      .|+++|..++... .+.                  .-.....++++| ++..+++...++.|++||..++... .+.+  
T Consensus       647 ~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G  724 (1057)
T PLN02919        647 ALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDG  724 (1057)
T ss_pred             eEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCC
Confidence            8999988665321 110                  012346789999 5556666677889999998776542 1111  


Q ss_pred             -------------CCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCcccccCCCCCCC-CccceEeee--------ccCC
Q 035621          124 -------------HDKPVSCLKISPDGSLL-ISGGDDGVIATVPIFQLVDEHTDDKNP-DDLMLQKFV--------AHND  180 (387)
Q Consensus       124 -------------~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~  180 (387)
                                   .-.....|+++|+++.| ++-+.++.|++||+............. .......+.        ..-.
T Consensus       725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~  804 (1057)
T PLN02919        725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ  804 (1057)
T ss_pred             ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence                         11245679999998844 455567899999984311000000000 000000000        0111


Q ss_pred             CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC--------------CceeEEEeCCCCCeEEEEccCCcE
Q 035621          181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP--------------CAIMGLALDPTETDFFAAGSDGLI  246 (387)
Q Consensus       181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~~dg~i  246 (387)
                      ....+++.+++  +++++-+.++.|++||..++.........              ..+..++++++|+.+++-+.++.|
T Consensus       805 ~P~Gvavd~dG--~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I  882 (1057)
T PLN02919        805 HPLGVLCAKDG--QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI  882 (1057)
T ss_pred             CCceeeEeCCC--cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence            23467787764  78888888999999999887655433211              257789999999988888889999


Q ss_pred             EEEeccccc
Q 035621          247 YKGLLKYQS  255 (387)
Q Consensus       247 ~i~d~~~~~  255 (387)
                      ++||+.+..
T Consensus       883 rvid~~~~~  891 (1057)
T PLN02919        883 RYLDLNKGE  891 (1057)
T ss_pred             EEEECCCCc
Confidence            999998754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.24  E-value=2.2e-08  Score=79.31  Aligned_cols=212  Identities=16%  Similarity=0.177  Sum_probs=136.0

Q ss_pred             EEeccCCCEEEEecCCCcEEEEeCCCC--ceeEEc---cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621           89 LATTADGSYLFTGGLSGNVYAISVPKG--DILRSF---SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        89 ~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      ++.+.+|+.||+- .|..|.+-..++.  ..+.+.   +.....-+.++|+||+.+|+.+...|+|++||+...      
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~------   75 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS------   75 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc------
Confidence            5677888888776 5666766654432  222222   222334578999999999999999999999999321      


Q ss_pred             CCCCCccceEeee-------ccCCCeEEEEEeeCCC----CceEEEEeCCCcEEEEeCCC-----CcEEEEEe----cCC
Q 035621          164 DKNPDDLMLQKFV-------AHNDSVTAITCCIGSF----NSIIISCSMDCTCKFWRLLN-----GTHLSTVT----FPC  223 (387)
Q Consensus       164 ~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~----~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~----~~~  223 (387)
                             .+..+.       .-...|..+.|.+...    ...|+.-..+|.++-|-+..     .+....|.    .+.
T Consensus        76 -------~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~  148 (282)
T PF15492_consen   76 -------ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPH  148 (282)
T ss_pred             -------eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCC
Confidence                   111111       1234566666654421    12466666788887776532     23444444    367


Q ss_pred             ceeEEEeCCCCCeEEEEccC----C-------cEEEEeccccccccc----c--------ccceeEee--------cccc
Q 035621          224 AIMGLALDPTETDFFAAGSD----G-------LIYKGLLKYQSRQQM----H--------KGQELVTL--------ANRH  272 (387)
Q Consensus       224 ~v~~~~~~~~~~~l~~~~~d----g-------~i~i~d~~~~~~~~~----~--------~~~~~~~~--------~~~~  272 (387)
                      .|.++.++|..+.|++|+..    +       -+..|.+-.+.....    .        +...+.+.        ....
T Consensus       149 Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~  228 (282)
T PF15492_consen  149 GINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQE  228 (282)
T ss_pred             ceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccC
Confidence            89999999999988887651    1       255666544322110    0        00000010        1123


Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          273 DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       273 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      ...|..|..||||..||+...+|.|.+|++.+-++.+.++.+
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            567999999999999999999999999999999888877654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.24  E-value=1.7e-10  Score=98.79  Aligned_cols=267  Identities=10%  Similarity=0.179  Sum_probs=174.4

Q ss_pred             CCcEEEeeCCCCcEEEEeCC-------CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621            7 CNEVILTSSPEGPITAYNPS-------SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~   79 (387)
                      +.+-+++++.|.+|++|.++       +..+..+++.|..+|.++.|..+....      ++.||-+.+||.--++++..
T Consensus       746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i------~ScD~giHlWDPFigr~Laq  819 (1034)
T KOG4190|consen  746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI------ASCDGGIHLWDPFIGRLLAQ  819 (1034)
T ss_pred             cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee------eeccCcceeecccccchhHh
Confidence            45678999999999999985       334677889999999999998754444      46799999999988887765


Q ss_pred             cC---CCCCeeeEEecc--CCCEEEEe-cCCCcEEEEeCCCCceeEEcc-----CCCCCeEEEEEcCCCCEEEEEeCCCc
Q 035621           80 IP---VPEPVAPLATTA--DGSYLFTG-GLSGNVYAISVPKGDILRSFS-----AHDKPVSCLKISPDGSLLISGGDDGV  148 (387)
Q Consensus        80 ~~---~~~~v~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~  148 (387)
                      ..   ..+.+..+..-+  +...+++| +...+|+++|.+..+-...++     +.+..+++++..+.|++++.+-.+|.
T Consensus       820 ~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGc  899 (1034)
T KOG4190|consen  820 MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGC  899 (1034)
T ss_pred             hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCc
Confidence            54   223344444444  33444444 677899999999887666554     33466899999999999999999999


Q ss_pred             EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEE-EeCCCCcEEEEEecC-Ccee
Q 035621          149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKF-WRLLNGTHLSTVTFP-CAIM  226 (387)
Q Consensus       149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~~~~-~~v~  226 (387)
                      |.+.|.            .+++.+..+..-.-....++. |.  .+.++....|.++.+ |....+......+.+ .+..
T Consensus       900 i~~LDa------------R~G~vINswrpmecdllqlaa-ps--dq~L~~saldHslaVnWhaldgimh~q~kpppepah  964 (1034)
T KOG4190|consen  900 IAILDA------------RNGKVINSWRPMECDLLQLAA-PS--DQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH  964 (1034)
T ss_pred             EEEEec------------CCCceeccCCcccchhhhhcC-ch--hHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence            999999            445555555444333333332 33  367888888888988 877666544443321 1111


Q ss_pred             EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEE
Q 035621          227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYI  299 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  299 (387)
                      -  ...-|..++++.....+.+|--.... .......++.  .....+..++++.-|-+.-++.|.+.|.|.+
T Consensus       965 f--lqsvgpSLV~a~~Gn~lgVYad~a~~-ha~stitKiR--~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  965 F--LQSVGPSLVTAQNGNILGVYADSAEL-HAESTITKIR--PDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             h--hhccCceeEEeccCcEEEEEecchhh-hhhhhhcccc--ccccCCccceeeeccccchhhccCCCCceee
Confidence            0  11235566666666666666322110 0000000000  1123566788888888888888888888875

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.24  E-value=2.9e-10  Score=93.44  Aligned_cols=150  Identities=13%  Similarity=0.134  Sum_probs=110.9

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc----eeEeccC--CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA----ILAHFSG--SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST   75 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~   75 (387)
                      ...+|.+++||.+..+....+++.....    ++..+..  -...+..+.......+...    .+....+.+|+...+.
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dk----agD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADK----AGDVYSFDILSADSGR  143 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEee----cCCceeeeeecccccC
Confidence            3578899999999988887777765332    2222221  2222333333332222222    5677788888887777


Q ss_pred             cccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621           76 PLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        76 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  154 (387)
                      +...+.|-..++.++++||+++++++..|..|++-.....-.+..+- +|+.-|..++.-++ ..|++++.|+++++||+
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence            77788888999999999999999999999999999887766666554 79999999999865 46999999999999999


Q ss_pred             Cc
Q 035621          155 FQ  156 (387)
Q Consensus       155 ~~  156 (387)
                      .+
T Consensus       223 ~s  224 (390)
T KOG3914|consen  223 TS  224 (390)
T ss_pred             cc
Confidence            44

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=1.4e-09  Score=96.08  Aligned_cols=255  Identities=13%  Similarity=0.103  Sum_probs=172.8

Q ss_pred             CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc---------------cccC-CCCCeeeEEeccCCCEEEEecC
Q 035621           40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL---------------HNIP-VPEPVAPLATTADGSYLFTGGL  103 (387)
Q Consensus        40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~---------------~~~~-~~~~v~~~~~~~~~~~l~~~~~  103 (387)
                      ...++.|+.+.    .+++.|+.||.+++..+.+...-               +++. |...|..+.|+.+.+.|-+...
T Consensus        16 kL~c~~WNke~----gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   16 KLHCAEWNKES----GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             eEEEEEEcccC----CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            47899999843    44555999999999988653211               1111 6678999999999999999999


Q ss_pred             CCcEEEEeCCCCceeEEc--cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC
Q 035621          104 SGNVYAISVPKGDILRSF--SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS  181 (387)
Q Consensus       104 dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (387)
                      +|.|.+|-+-.++-...+  ...+..|.+++|+.+|..+.....||.|.+=.+.             +..+..-.-....
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-------------GNRIwgKeLkg~~  158 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-------------GNRIWGKELKGQL  158 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-------------cceecchhcchhe
Confidence            999999999877644333  2345678999999999999999999988765441             1111100001112


Q ss_pred             eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-------cEEEEEe-----cCCceeEEEeC--------CCCCeEEEEc
Q 035621          182 VTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-------THLSTVT-----FPCAIMGLALD--------PTETDFFAAG  241 (387)
Q Consensus       182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~-----~~~~v~~~~~~--------~~~~~l~~~~  241 (387)
                      ...+.|+++.  ..++.+-.+|.+.+||....       .+.....     .+..+..+.|.        |+...++++-
T Consensus       159 l~hv~ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy  236 (1189)
T KOG2041|consen  159 LAHVLWSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY  236 (1189)
T ss_pred             ccceeecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence            3367788875  67777778899999997532       1211111     23345666664        5778999999


Q ss_pred             cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC---------CcEEEEECCCccEEEEee
Q 035621          242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED---------GSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~  312 (387)
                      .+|.+.+-.-.+.        +.+.-+  .....+..+.|+++|.+|+.++.|         +.|.+|. .-|+.+.+++
T Consensus       237 ~nGr~QiMR~eND--------~~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlk  305 (1189)
T KOG2041|consen  237 ANGRMQIMRSEND--------PEPVVV--DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLK  305 (1189)
T ss_pred             cCceehhhhhcCC--------CCCeEE--ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEe
Confidence            9999887654442        222222  234678899999999999998765         2566665 3477777777


Q ss_pred             cccCCCceeEEEE
Q 035621          313 NELAGSISEMVIA  325 (387)
Q Consensus       313 ~~~~~~v~~~~~~  325 (387)
                      .... .|+++.+-
T Consensus       306 vpg~-~It~lsWE  317 (1189)
T KOG2041|consen  306 VPGS-CITGLSWE  317 (1189)
T ss_pred             cCCc-eeeeeEEc
Confidence            6533 67766554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=3.2e-08  Score=87.42  Aligned_cols=215  Identities=11%  Similarity=-0.013  Sum_probs=127.6

Q ss_pred             CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCE-EEEecC---CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC
Q 035621           63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSY-LFTGGL---SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS  138 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  138 (387)
                      ...|.+=|.+... .+.+..........|+|||+. ++..+.   +..|+++|+.+++...... ..+......|+|||+
T Consensus       168 ~~~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~  245 (419)
T PRK04043        168 KSNIVLADYTLTY-QKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS  245 (419)
T ss_pred             cceEEEECCCCCc-eeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence            3456665654333 332333347778999999985 554433   3579999998887654433 455566788999998


Q ss_pred             EEEEE-eCC--CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCC--cEEEEeCCC
Q 035621          139 LLISG-GDD--GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDC--TCKFWRLLN  212 (387)
Q Consensus       139 ~l~~~-~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~  212 (387)
                      .++.. +.+  ..|.++|+.            .. ....+..+........|+|++  +.|+..+ ..+  .|.++|+.+
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~------------~g-~~~~LT~~~~~d~~p~~SPDG--~~I~F~Sdr~g~~~Iy~~dl~~  310 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTN------------TK-TLTQITNYPGIDVNGNFVEDD--KRIVFVSDRLGYPNIFMKKLNS  310 (419)
T ss_pred             EEEEEEccCCCcEEEEEECC------------CC-cEEEcccCCCccCccEECCCC--CEEEEEECCCCCceEEEEECCC
Confidence            66543 334  457777762            22 233333333333455788886  5444444 333  588888887


Q ss_pred             CcEEEEEecCCceeEEEeCCCCCeEEEEccC---------CcEEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621          213 GTHLSTVTFPCAIMGLALDPTETDFFAAGSD---------GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN  283 (387)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  283 (387)
                      ++..+.......  ...|+|+|+.|+.....         ..|++.|+..+...         .+...  .......|+|
T Consensus       311 g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~---------~LT~~--~~~~~p~~SP  377 (419)
T PRK04043        311 GSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR---------RLTAN--GVNQFPRFSS  377 (419)
T ss_pred             CCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE---------ECCCC--CCcCCeEECC
Confidence            765433322222  34899999998877653         25777777664321         11111  1223578999


Q ss_pred             CCCEEEEEeCC---CcEEEEECCCccE
Q 035621          284 EGKNLVSAAED---GSVYIWEIEKRQV  307 (387)
Q Consensus       284 ~~~~l~s~~~d---g~i~iwd~~~~~~  307 (387)
                      ||+.|+....+   ..+.+.++..+..
T Consensus       378 DG~~I~f~~~~~~~~~L~~~~l~g~~~  404 (419)
T PRK04043        378 DGGSIMFIKYLGNQSALGIIRLNYNKS  404 (419)
T ss_pred             CCCEEEEEEccCCcEEEEEEecCCCee
Confidence            99988765433   2466777765433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=6.4e-10  Score=92.80  Aligned_cols=291  Identities=14%  Similarity=0.113  Sum_probs=186.8

Q ss_pred             CcEEEeeCCCCcEEEEeCCC--C-ceeEeccCCCCCceeEEEcCccceeeeccccCCC-CCeEEEEEccCCCcccccCCC
Q 035621            8 NEVILTSSPEGPITAYNPSS--G-AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTG-SGSVHLYNLWSSTPLHNIPVP   83 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-d~~v~vw~~~~~~~~~~~~~~   83 (387)
                      .+++.+++.||.++.|....  + +.+..+..|...|.+++.+-++.+..+    .+. |..++++|+++-..+..++..
T Consensus        20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~S----v~d~Dhs~KvfDvEn~DminmiKL~   95 (558)
T KOG0882|consen   20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRS----VEDPDHSVKVFDVENFDMINMIKLV   95 (558)
T ss_pred             hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEee----ccCcccceeEEEeeccchhhhcccc
Confidence            46889999999999998643  1 345556678888888888887666554    555 999999999988777666544


Q ss_pred             CCeeeEEecc-CC---CEEEEe-cCCCcEEEEeCCCCc--eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621           84 EPVAPLATTA-DG---SYLFTG-GLSGNVYAISVPKGD--ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        84 ~~v~~~~~~~-~~---~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      .....+.|.. .|   ..++++ -.+|.+.++|-....  ....-+-|..+|.++.+++-+..+++....|.|.-|....
T Consensus        96 ~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~  175 (558)
T KOG0882|consen   96 DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG  175 (558)
T ss_pred             cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence            4333333332 22   134443 367899999975543  3344456999999999999999999999999999998853


Q ss_pred             ccccCCC---CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCC
Q 035621          157 LVDEHTD---DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPT  233 (387)
Q Consensus       157 ~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  233 (387)
                      .......   ..-....-+..+........++.|+|++  ..+.+-+.|..|+++++++++.++.+.....  ...+-|.
T Consensus       176 ~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g--~qistl~~DrkVR~F~~KtGklvqeiDE~~t--~~~~q~k  251 (558)
T KOG0882|consen  176 PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG--AQISTLNPDRKVRGFVFKTGKLVQEIDEVLT--DAQYQPK  251 (558)
T ss_pred             cccCccccccccccccchhhcccccccCccceEEcccc--CcccccCcccEEEEEEeccchhhhhhhccch--hhhhccc
Confidence            1111000   0011222333344556677899999986  8888889999999999999998877752110  0001111


Q ss_pred             CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621          234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      .          .+.+-.+.-+.+...  ..+   +.+.....-+.+.|...|++|+-|+.=| |++.++.++++++.+-.
T Consensus       252 s----------~y~l~~VelgRRmav--ere---lek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk  315 (558)
T KOG0882|consen  252 S----------PYGLMHVELGRRMAV--ERE---LEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK  315 (558)
T ss_pred             c----------ccccceeehhhhhhH--Hhh---HhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence            1          111111111110000  000   1111223446788999999999998776 99999999999988865


Q ss_pred             ccCCCceeE
Q 035621          314 ELAGSISEM  322 (387)
Q Consensus       314 ~~~~~v~~~  322 (387)
                      ...-..+.+
T Consensus       316 ~e~ir~~~~  324 (558)
T KOG0882|consen  316 DEAIRFTRL  324 (558)
T ss_pred             chhhhhhhH
Confidence            443333333

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.18  E-value=9.5e-08  Score=80.77  Aligned_cols=199  Identities=11%  Similarity=0.133  Sum_probs=139.2

Q ss_pred             eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE-cc-----CCC-----CCeEEEE-EcC-CCCEEEEEeCCCcEEEE
Q 035621           86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS-FS-----AHD-----KPVSCLK-ISP-DGSLLISGGDDGVIATV  152 (387)
Q Consensus        86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~-----~~~-----~~v~~~~-~~~-~~~~l~~~~~dg~i~iw  152 (387)
                      -.+-..+.||+.++.. ..|.|.+||..+.+.... +.     ...     .+..-+. |++ +|.+++..+. |..-+.
T Consensus       269 YY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~  346 (668)
T COG4946         269 YYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIM  346 (668)
T ss_pred             ccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEE
Confidence            3344456788888764 568899999876653221 10     000     1111121 444 6788888776 555555


Q ss_pred             eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC-cEEEEeCCCCcEEEEEecCCceeEEEeC
Q 035621          153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC-TCKFWRLLNGTHLSTVTFPCAIMGLALD  231 (387)
Q Consensus       153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~v~~~~~~  231 (387)
                      +..            .. . ....+|.+.|.-..+.-++  +-++.|..|| .+-|||..+++..+....-+.|.++..+
T Consensus       347 ~~~------------~~-~-~iqv~~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs  410 (668)
T COG4946         347 RPW------------DG-Y-SIQVGKKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVS  410 (668)
T ss_pred             CCC------------CC-e-eEEcCCCCceEEEEEccCC--cceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEc
Confidence            441            11 1 1223566778877776664  5788888998 8999999988766655566889999999


Q ss_pred             CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC----cEEEEECCCccE
Q 035621          232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG----SVYIWEIEKRQV  307 (387)
Q Consensus       232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----~i~iwd~~~~~~  307 (387)
                      |+|++++++.....+.++|+.++...         ...+...+-|+.+.|+|+++++|-+--+|    .|+++|+.+++.
T Consensus       411 ~dGK~~vvaNdr~el~vididngnv~---------~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         411 PDGKKVVVANDRFELWVIDIDNGNVR---------LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             CCCcEEEEEcCceEEEEEEecCCCee---------EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            99999999999999999999985432         22234567899999999999999876555    699999999887


Q ss_pred             EEEe
Q 035621          308 VMVL  311 (387)
Q Consensus       308 ~~~~  311 (387)
                      ...-
T Consensus       482 y~vT  485 (668)
T COG4946         482 YDVT  485 (668)
T ss_pred             EEec
Confidence            6544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.18  E-value=3.7e-08  Score=87.26  Aligned_cols=258  Identities=13%  Similarity=0.114  Sum_probs=153.1

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCee
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVA   87 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~   87 (387)
                      +..++.++.+|.++.+|.++|+.+.+.+.......+.....      ..++.+..++.+..+|.++|+.+..+....+..
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~------~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~  193 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSD------GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL  193 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEEC------CEEEEECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence            45677788889999999999998877754322111111222      223335678999999999999887776432211


Q ss_pred             eE--Eecc--CCCEEEEecCCCcEEEEeCCCCceeEEccCCCC-------CeEEEEEcC--CCCEEEEEeCCCcEEEEeC
Q 035621           88 PL--ATTA--DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDK-------PVSCLKISP--DGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        88 ~~--~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~dg~i~iwd~  154 (387)
                      .+  .-+|  .+..++.++.+|.+..+|..+|+.+........       ....+..+|  .+..++.++.+|.+..+|.
T Consensus       194 ~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~  273 (394)
T PRK11138        194 TLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL  273 (394)
T ss_pred             cccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence            00  0112  234577778899999999999987655431110       011111223  3456777888999999988


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec-C-CceeEEEeCC
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF-P-CAIMGLALDP  232 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~-~~v~~~~~~~  232 (387)
                      .            ++..+-...  ......+..  .  +..++.++.+|.+..+|..+++.+..... . ....+...  
T Consensus       274 ~------------tG~~~W~~~--~~~~~~~~~--~--~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--  333 (394)
T PRK11138        274 R------------SGQIVWKRE--YGSVNDFAV--D--GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--  333 (394)
T ss_pred             C------------CCCEEEeec--CCCccCcEE--E--CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--
Confidence            3            332222211  111111222  1  35777788899999999999987765432 1 11121122  


Q ss_pred             CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEE-EEEEecCCCEEEEEeCCCcEEEEEC
Q 035621          233 TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV-SVMMMNEGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       233 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~iwd~  302 (387)
                      .+..+++++.+|.++..|..+++..        ..... ....+. ...+  .+..|+.++.||.|+.++.
T Consensus       334 ~~g~l~v~~~~G~l~~ld~~tG~~~--------~~~~~-~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        334 YNGYLVVGDSEGYLHWINREDGRFV--------AQQKV-DSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEE--------EEEEc-CCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            3567889999999999998874322        11111 111122 1122  2457888899999988764

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.16  E-value=1.9e-09  Score=83.69  Aligned_cols=188  Identities=16%  Similarity=0.231  Sum_probs=113.2

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEeccC--CCCCceeEEEcC------ccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHFSG--SRSPRRGLTFAG------KPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~------~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      .|+++..++.+.....-++.+....+.  ..++..+++.+.      ......+.++++..||.+.+++.+.   .....
T Consensus        49 ~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~---~~~~~  125 (319)
T KOG4714|consen   49 ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK---DLALM  125 (319)
T ss_pred             eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechH---HHhhh
Confidence            456666666666655544433322211  112233333321      1112334566788999999998765   22222


Q ss_pred             CCCCe-----eeEEeccCCCEEEEecC-----CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC-CCEEEEEeCCCcEE
Q 035621           82 VPEPV-----APLATTADGSYLFTGGL-----SGNVYAISVPKGDILRSFSAHDKPVSCLKISPD-GSLLISGGDDGVIA  150 (387)
Q Consensus        82 ~~~~v-----~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~  150 (387)
                      +..++     .+.++...++.+.++..     -+..+.|+++..+....-+.....|++++-+|. .+.+++|+.||.+.
T Consensus       126 ~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~  205 (319)
T KOG4714|consen  126 SRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVG  205 (319)
T ss_pred             hhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEE
Confidence            22221     22233334555554431     234556665433222111112344999999994 55788889999999


Q ss_pred             EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC
Q 035621          151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN  212 (387)
Q Consensus       151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  212 (387)
                      +||.++.           ..+...+..|..+|+-+-|+|.. +..|+++++||.+.-||..+
T Consensus       206 l~d~rn~-----------~~p~S~l~ahk~~i~eV~FHpk~-p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  206 LWDARNV-----------AMPVSLLKAHKAEIWEVHFHPKN-PEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEcccc-----------cchHHHHHHhhhhhhheeccCCC-chheeEecCCCcEEEEcCCC
Confidence            9999652           34566678999999999999985 78899999999999999765

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.15  E-value=2.9e-10  Score=100.51  Aligned_cols=221  Identities=15%  Similarity=0.207  Sum_probs=156.2

Q ss_pred             ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCC--CCeEEEEEcCCCC---EEEEEeCCCcEEEE
Q 035621           79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHD--KPVSCLKISPDGS---LLISGGDDGVIATV  152 (387)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~--~~v~~~~~~~~~~---~l~~~~~dg~i~iw  152 (387)
                      .++..+++..+..+|.|+-++.++.-| +.+.|+... .+.+-+. |.  -.|-...|+|...   .+++.+ ...-.+|
T Consensus        20 sl~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiw   96 (1081)
T KOG0309|consen   20 SLKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIW   96 (1081)
T ss_pred             EEEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecC-cchhhhh
Confidence            344567888999999999999998877 666676543 2222221 22  2466778887543   444444 4445689


Q ss_pred             eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEEe-cCCceeEEEe
Q 035621          153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTVT-FPCAIMGLAL  230 (387)
Q Consensus       153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~~~~  230 (387)
                      ++...         .....-..+.+|...|+.+.|.|.. ...+++++.|-.+..||+++.. ++..+. .......+.|
T Consensus        97 nlA~s---------s~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkw  166 (1081)
T KOG0309|consen   97 NLAKS---------SSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKW  166 (1081)
T ss_pred             hhhcC---------CccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCCcceeeeecccccCceeee
Confidence            88432         2333445567899999999999875 6899999999999999999864 344443 4667788999


Q ss_pred             CCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEEeCCCcEEEEECCCccEEE
Q 035621          231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSAAEDGSVYIWEIEKRQVVM  309 (387)
Q Consensus       231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~  309 (387)
                      +-....+.+.+....|.+||.+.        +..+....++|...|+.+.|.. ....+.+.+.||+|++||.+......
T Consensus       167 nyk~p~vlasshg~~i~vwd~r~--------gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~  238 (1081)
T KOG0309|consen  167 NYKDPNVLASSHGNDIFVWDLRK--------GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES  238 (1081)
T ss_pred             cccCcchhhhccCCceEEEeccC--------CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc
Confidence            98888888888899999999998        4455555667889999998864 33467889999999999987654433


Q ss_pred             EeecccCCCce
Q 035621          310 VLKNELAGSIS  320 (387)
Q Consensus       310 ~~~~~~~~~v~  320 (387)
                      ........+|.
T Consensus       239 ~~~vtt~~piw  249 (1081)
T KOG0309|consen  239 KRTVTTNFPIW  249 (1081)
T ss_pred             ceeccccCcce
Confidence            33323333443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.15  E-value=1.3e-09  Score=86.88  Aligned_cols=229  Identities=15%  Similarity=0.192  Sum_probs=147.1

Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-----eeEEccCCC------------CCeEEEEEcCCCC--EEEE
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD-----ILRSFSAHD------------KPVSCLKISPDGS--LLIS  142 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~  142 (387)
                      ..+.|+++.|...|.||++|...|.|.+|.-+...     ....+++|.            ..|..+.|..++.  .++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34678999999999999999999999999764432     223345553            3467788766443  6777


Q ss_pred             EeCCCcEEEEeCCcccccC--------------CCC-----------CCCCcc-----ceEe-eeccCCCeEEEEEeeCC
Q 035621          143 GGDDGVIATVPIFQLVDEH--------------TDD-----------KNPDDL-----MLQK-FVAHNDSVTAITCCIGS  191 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~--------------~~~-----------~~~~~~-----~~~~-~~~~~~~i~~~~~~~~~  191 (387)
                      .+.|.+|++|.+....-..              ..+           ......     +.+. -..|.-.|+++.+..+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            7899999999986431000              000           000000     1111 14577778888887663


Q ss_pred             CCceEEEEeCCCcEEEEeCCCCcEEEEE---e-c-----CCceeEEEeCCCC-CeEEEEccCCcEEEEecccccccccc-
Q 035621          192 FNSIIISCSMDCTCKFWRLLNGTHLSTV---T-F-----PCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMH-  260 (387)
Q Consensus       192 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~-~-----~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~-  260 (387)
                        ..++++ .|=.|.+|++.-...-..+   + +     ...|++..|+|.. +.+.-.+..|.|++-|++........ 
T Consensus       185 --et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~  261 (460)
T COG5170         185 --ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK  261 (460)
T ss_pred             --heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence              566554 5778999998754322222   1 2     2358889999976 55666778999999999853322110 


Q ss_pred             ------ccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC-ccEEEEeecc
Q 035621          261 ------KGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK-RQVVMVLKNE  314 (387)
Q Consensus       261 ------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~  314 (387)
                            ....-..++..-...|..+.|+++|+++++-+. -+|+|||+.. ..++.++..|
T Consensus       262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence                  011111222334467889999999999998765 4899999987 4567777544

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.13  E-value=2.1e-09  Score=97.44  Aligned_cols=185  Identities=19%  Similarity=0.270  Sum_probs=143.5

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceE
Q 035621           94 DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQ  173 (387)
Q Consensus        94 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  173 (387)
                      ++..++.|+....+..+|+++.+..+...-....|+-|+.  +++.+++|...|+|.+-|.            .....++
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~------------~s~~~ih  211 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDP------------NSFETIH  211 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecC------------CcCceee
Confidence            4456778888888999999988877766544445666665  6789999999999999998            6778899


Q ss_pred             eeeccCCCeEEEEEeeCCCCceEEEEeC---------CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC-CeEEEEccC
Q 035621          174 KFVAHNDSVTAITCCIGSFNSIIISCSM---------DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE-TDFFAAGSD  243 (387)
Q Consensus       174 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  243 (387)
                      ++.+|.+.|..+...    |++|++|+.         |..|+|||++..+.+..+..+....-+.|+|.- ..+++++..
T Consensus       212 t~~aHs~siSDfDv~----GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~s  287 (1118)
T KOG1275|consen  212 TFDAHSGSISDFDVQ----GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQS  287 (1118)
T ss_pred             eeeccccceeeeecc----CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecc
Confidence            999999999888664    578999876         556899999999888888877666778888864 678888889


Q ss_pred             CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          244 GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       244 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      |...+.|...-..     ...-..........+..++++++++.++.|..+|.|.+|.
T Consensus       288 Gq~q~vd~~~lsN-----P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  288 GQFQFVDTATLSN-----PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cceeeccccccCC-----CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            9999988332111     1011111123345599999999999999999999999998

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=1.3e-07  Score=83.61  Aligned_cols=203  Identities=10%  Similarity=-0.023  Sum_probs=123.2

Q ss_pred             CcEEEEeCCCCceeEeccCCCCCceeEEEcCccce-eeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCC
Q 035621           18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFI-AASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGS   96 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~   96 (387)
                      ..|.+-|.. |...+.+.... ......|+|++.. ....- ..+....|.++|+.+++.......++......|+|||+
T Consensus       169 ~~l~~~d~d-g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s-~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYT-LTYQKVIVKGG-LNIFPKWANKEQTAFYYTS-YGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCC-CCceeEEccCC-CeEeEEECCCCCcEEEEEE-ccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence            467776654 43344343333 6778899997642 22111 12235689999998887766555666677788999998


Q ss_pred             EEEEe-cC--CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEeCCcccccCCCCCCCCcc
Q 035621           97 YLFTG-GL--SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-DG--VIATVPIFQLVDEHTDDKNPDDL  170 (387)
Q Consensus        97 ~l~~~-~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~  170 (387)
                      .++.. +.  +..|.++|+.+++. ..+..+........|+|||+.|+..+. .+  .|.+.|+.            .+.
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~------------~g~  312 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN------------SGS  312 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC------------CCC
Confidence            77654 32  35788889877764 344434433345689999987766653 34  46666662            111


Q ss_pred             ceEeeeccCCCeEEEEEeeCCCCceEEEEeCC---------CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc
Q 035621          171 MLQKFVAHNDSVTAITCCIGSFNSIIISCSMD---------CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       171 ~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  241 (387)
                      . ..+......  ...|+|++  +.++..+..         ..|.+.|+.++.. +.+..........|+|||+.++...
T Consensus       313 ~-~rlt~~g~~--~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I~f~~  386 (419)
T PRK04043        313 V-EQVVFHGKN--NSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSIMFIK  386 (419)
T ss_pred             e-EeCccCCCc--CceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEEEEEE
Confidence            1 111111111  24788886  555554433         3688889887764 3444333344688999999887765


Q ss_pred             c
Q 035621          242 S  242 (387)
Q Consensus       242 ~  242 (387)
                      .
T Consensus       387 ~  387 (419)
T PRK04043        387 Y  387 (419)
T ss_pred             c
Confidence            4

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.10  E-value=2.2e-07  Score=76.66  Aligned_cols=220  Identities=15%  Similarity=0.151  Sum_probs=139.9

Q ss_pred             cccC-CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEc-CccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            3 HHLP-CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFA-GKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         3 ~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      .|.+ ++.++++--..+.|+.|+..+++... +....  ...+++. +++.+..     +. .+.+.++|..+++.....
T Consensus         6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v-----~~-~~~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYV-----AD-SGGIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEE-----EE-TTCEEEEETTTTEEEEEE
T ss_pred             EEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEE-----EE-cCceEEEecCCCcEEEEe
Confidence            5777 78888888888999999998776543 22222  6677777 5444332     22 345566698887543332


Q ss_pred             C------CCCCeeeEEeccCCCEEEEecCC--------CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE-EEeC
Q 035621           81 P------VPEPVAPLATTADGSYLFTGGLS--------GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI-SGGD  145 (387)
Q Consensus        81 ~------~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~  145 (387)
                      .      .....+.+++.|+|++.++....        |.|..++.. ++...... .-...+.|+|+|+++.|+ +-+.
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc
Confidence            2      22468899999999977665433        557777776 55433332 345678999999998775 5566


Q ss_pred             CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC-Cc
Q 035621          146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-CA  224 (387)
Q Consensus       146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~  224 (387)
                      .+.|..+++.......     ........+....+....+++..+  +++.++....+.|.++|.. |+.+..+..+ ..
T Consensus       155 ~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~g~pDG~~vD~~--G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~  226 (246)
T PF08450_consen  155 NGRIWRFDLDADGGEL-----SNRRVFIDFPGGPGYPDGLAVDSD--GNLWVADWGGGRIVVFDPD-GKLLREIELPVPR  226 (246)
T ss_dssp             TTEEEEEEEETTTCCE-----EEEEEEEE-SSSSCEEEEEEEBTT--S-EEEEEETTTEEEEEETT-SCEEEEEE-SSSS
T ss_pred             cceeEEEeccccccce-----eeeeeEEEcCCCCcCCCcceEcCC--CCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCC
Confidence            7788888873210000     001111122222234667887665  5888887788999999987 9999888866 78


Q ss_pred             eeEEEe-CCCCCeEEEEc
Q 035621          225 IMGLAL-DPTETDFFAAG  241 (387)
Q Consensus       225 v~~~~~-~~~~~~l~~~~  241 (387)
                      +++++| -++.+.|++.+
T Consensus       227 ~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  227 PTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEEEESTTSSEEEEEE
T ss_pred             EEEEEEECCCCCEEEEEe
Confidence            999999 46767666654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.07  E-value=7.3e-09  Score=82.65  Aligned_cols=279  Identities=11%  Similarity=0.139  Sum_probs=164.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCC-----ceeEeccCCCC------------CceeEEEcCccceeeeccccCCCCC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSG-----AILAHFSGSRS------------PRRGLTFAGKPFIAASHISPTTGSG   64 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~~d~   64 (387)
                      +.|...|.+|++|...|.|.+|.-...     +...++++|..            .|..+.|..+...  +.+...+.|.
T Consensus        32 Vefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r--~hFLlstNdk  109 (460)
T COG5170          32 VEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR--NHFLLSTNDK  109 (460)
T ss_pred             EEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc--ceEEEecCCc
Confidence            356778899999999999999986532     23345666653            3778888753321  2233367899


Q ss_pred             eEEEEEccCCCccccc--CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC------CceeEEc-cCCCCCeEEEEEcC
Q 035621           65 SVHLYNLWSSTPLHNI--PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPK------GDILRSF-SAHDKPVSCLKISP  135 (387)
Q Consensus        65 ~v~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~-~~~~~~v~~~~~~~  135 (387)
                      +|++|.+........-  ...+.+.    +|-+.-+.+.   ..+++=.+..      ..+.+.. ..|...+.++.|+.
T Consensus       110 tiKlWKiyeknlk~va~nnls~~~~----~~~~g~~~s~---~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns  182 (460)
T COG5170         110 TIKLWKIYEKNLKVVAENNLSDSFH----SPMGGPLTST---KELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS  182 (460)
T ss_pred             eeeeeeeecccchhhhccccccccc----cccCCCcCCH---HHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence            9999998655322111  1111111    1111000000   0011100000      0111222 46888899999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC-----CCeEEEEEeeCCCCceEEEEeCCCcEEEEeC
Q 035621          136 DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN-----DSVTAITCCIGSFNSIIISCSMDCTCKFWRL  210 (387)
Q Consensus       136 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~  210 (387)
                      |...++++ .|=.|.+|++...         .....+..+++|.     .-|++..|+|.. .+.+.-.+..|.|++-|+
T Consensus       183 D~et~lSa-DdLrINLWnl~i~---------D~sFnIVDiKP~nmeeLteVItSaeFhp~~-cn~fmYSsSkG~Ikl~Dl  251 (460)
T COG5170         183 DKETLLSA-DDLRINLWNLEII---------DGSFNIVDIKPHNMEELTEVITSAEFHPEM-CNVFMYSSSKGEIKLNDL  251 (460)
T ss_pred             chheeeec-cceeeeecccccc---------CCceEEEeccCccHHHHHHHHhhcccCHhH-cceEEEecCCCcEEehhh
Confidence            88877765 4678899988321         1222333444443     357888899886 466777777899999999


Q ss_pred             CCCcE------EEEEe-----------cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccc------ceeEe
Q 035621          211 LNGTH------LSTVT-----------FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG------QELVT  267 (387)
Q Consensus       211 ~~~~~------~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~  267 (387)
                      +....      +....           .-..|..+.|+++|+++++-+. -++++||.+..........      .++..
T Consensus       252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d  330 (460)
T COG5170         252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELND  330 (460)
T ss_pred             hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHh
Confidence            84321      11111           1246888999999999987654 4799999987432211000      00000


Q ss_pred             eccccccc---EEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          268 LANRHDGV---VVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       268 ~~~~~~~~---v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      .  -....   -..+.||.|.+.+++|+......+|-+.
T Consensus       331 ~--YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         331 V--YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             h--hhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence            0  01112   2457888899999999998888888744

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=6e-10  Score=95.51  Aligned_cols=183  Identities=15%  Similarity=0.178  Sum_probs=133.9

Q ss_pred             eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE
Q 035621          118 LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII  197 (387)
Q Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  197 (387)
                      +..+.+|+..|+.++--.+.+-+++++.|+++++|.++...+.     ..+..+..+++.|..+|.++.|..+.  ++++
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~-----~~tsaCQfTY~aHkk~i~~igfL~~l--r~i~  800 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE-----IGTSACQFTYQAHKKPIHDIGFLADL--RSIA  800 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc-----cccceeeeEhhhccCcccceeeeecc--ceee
Confidence            4567799999999887778888999999999999999543222     24455778889999999999998774  6666


Q ss_pred             EEeCCCcEEEEeCCCCcEEEEEe---cCCceeEEEeCC--CCCeEEEE-ccCCcEEEEeccccccccccccceeEeeccc
Q 035621          198 SCSMDCTCKFWRLLNGTHLSTVT---FPCAIMGLALDP--TETDFFAA-GSDGLIYKGLLKYQSRQQMHKGQELVTLANR  271 (387)
Q Consensus       198 s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  271 (387)
                      ++  ||-|++||.--++++....   .++.+..+..-|  +...+.++ +...+++++|.+........   .+. -..+
T Consensus       801 Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~---kVc-na~~  874 (1034)
T KOG4190|consen  801 SC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCEL---KVC-NAPG  874 (1034)
T ss_pred             ec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeE---Eec-cCCC
Confidence            54  7899999988777766443   223333333223  44555555 56899999999875433221   111 1124


Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621          272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       272 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      ..+.+.+++..+.|+.++.+-..|.|.+.|.++|+.+..+..
T Consensus       875 Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp  916 (1034)
T KOG4190|consen  875 PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP  916 (1034)
T ss_pred             CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence            456789999999999999999999999999999998876653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.06  E-value=1.2e-07  Score=77.93  Aligned_cols=216  Identities=18%  Similarity=0.260  Sum_probs=136.6

Q ss_pred             CCcEEEEeCCCCceeEeccCCC--CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccC
Q 035621           17 EGPITAYNPSSGAILAHFSGSR--SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTAD   94 (387)
Q Consensus        17 dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~   94 (387)
                      +|.|..||..+|+.+....-..  ....+.....++.     +++++.++.+..||..+|+.+..+..++++.... ...
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGR-----VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTE-----EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCE-----EEEEcCCCEEEEEECCCCCEEEEeecccccccee-eec
Confidence            6899999999999988775311  1111112212222     2224689999999999999988887766554443 334


Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEc-cCCC---CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCcc
Q 035621           95 GSYLFTGGLSGNVYAISVPKGDILRSF-SAHD---KPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDL  170 (387)
Q Consensus        95 ~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  170 (387)
                      +..++++..++.+..+|..+|+.+... ....   ..........++..++.+..++.|..+|+            .++.
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~------------~tG~  143 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP------------KTGK  143 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET------------TTTE
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec------------CCCc
Confidence            456677778889999999999998874 3221   11122233334778888888999999998            4455


Q ss_pred             ceEeeeccCCC----------eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEE
Q 035621          171 MLQKFVAHNDS----------VTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA  240 (387)
Q Consensus       171 ~~~~~~~~~~~----------i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  240 (387)
                      .+.........          +..-... .  +..++.++.++.+..+|+.+++.+.... ...+.. ...+.+..++++
T Consensus       144 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~  218 (238)
T PF13360_consen  144 LLWKYPVGEPRGSSPISSFSDINGSPVI-S--DGRVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVT  218 (238)
T ss_dssp             EEEEEESSTT-SS--EEEETTEEEEEEC-C--TTEEEEECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEE
T ss_pred             EEEEeecCCCCCCcceeeecccccceEE-E--CCEEEEEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEE
Confidence            55544443211          1111111 1  2366666777754444999999775443 333333 245677888888


Q ss_pred             ccCCcEEEEeccccc
Q 035621          241 GSDGLIYKGLLKYQS  255 (387)
Q Consensus       241 ~~dg~i~i~d~~~~~  255 (387)
                      +.++.+..||++++.
T Consensus       219 ~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  219 SSDGRLYALDLKTGK  233 (238)
T ss_dssp             ETTTEEEEEETTTTE
T ss_pred             eCCCEEEEEECCCCC
Confidence            899999999999854

...

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=99.03  E-value=1.6e-06  Score=78.80  Aligned_cols=286  Identities=10%  Similarity=0.077  Sum_probs=160.5

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCc-ee-EEEcCccceee-eccccCCCCCeEEEEEccCCCcccccCCCC
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPR-RG-LTFAGKPFIAA-SHISPTTGSGSVHLYNLWSSTPLHNIPVPE   84 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~-~~~~~~~~~~~-~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~   84 (387)
                      +..++.++.++.|+-.|..+|+.+..+....... .. ..+.....+.. ..++.++.++.|..+|.++++.+..+....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~  140 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND  140 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence            4456677788999999999999887765332200 00 00010000111 233346789999999999999988776543


Q ss_pred             C------ee-eEEeccCCCEEEEec---------CCCcEEEEeCCCCceeEEccCCCC--------------------Ce
Q 035621           85 P------VA-PLATTADGSYLFTGG---------LSGNVYAISVPKGDILRSFSAHDK--------------------PV  128 (387)
Q Consensus        85 ~------v~-~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~--------------------~v  128 (387)
                      .      +. ...+.  +..++.++         .+|.+..+|..+|+.+..++....                    .+
T Consensus       141 ~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v  218 (488)
T cd00216         141 QVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS  218 (488)
T ss_pred             CcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence            3      11 11222  24555554         367899999999998877643211                    01


Q ss_pred             -EEEEEcCCCCEEEEEeCCC------------------cEEEEeCCcccccCCCCCCCCccceEeeeccCCCe------E
Q 035621          129 -SCLKISPDGSLLISGGDDG------------------VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV------T  183 (387)
Q Consensus       129 -~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~  183 (387)
                       ...++.+.+..++.++.++                  .|.-+|.            .+++..-.++.-....      .
T Consensus       219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~------------~tG~~~W~~~~~~~~~~~~~~~s  286 (488)
T cd00216         219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA------------DTGKVKWFYQTTPHDLWDYDGPN  286 (488)
T ss_pred             cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC------------CCCCEEEEeeCCCCCCcccccCC
Confidence             1234455566788887665                  5767776            3333333332110000      0


Q ss_pred             EEEEee--CCCC---ceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEE------------------
Q 035621          184 AITCCI--GSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA------------------  240 (387)
Q Consensus       184 ~~~~~~--~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------  240 (387)
                      ...+.+  ..++   ..++.++.+|.+...|.++|+.+......  ...++.+|  ..++++                  
T Consensus       287 ~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~  362 (488)
T cd00216         287 QPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKK  362 (488)
T ss_pred             CCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCC
Confidence            001111  0111   36788888999999999999998876532  11223333  333332                  


Q ss_pred             ccCCcEEEEeccccccccccccceeEeecccccccE--EEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV--VSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      ..+|.+.-.|..+++.............. .-..+.  ..+.  ..+..|+.++.||.|+.+|.++|+.+.+.+..
T Consensus       363 ~~~G~l~AlD~~tG~~~W~~~~~~~~~~~-~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~  435 (488)
T cd00216         363 PGKGGLAALDPKTGKVVWEKREGTIRDSW-NIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFRTP  435 (488)
T ss_pred             CCceEEEEEeCCCCcEeeEeeCCcccccc-ccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEECC
Confidence            23567777777775433221111000000 000111  1122  24578888899999999999999999988753

The alignment model contains an 8-bladed beta-propeller.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.02  E-value=1e-06  Score=70.15  Aligned_cols=226  Identities=17%  Similarity=0.142  Sum_probs=130.5

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCC--ceeEec---cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSG--AILAHF---SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP   76 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~   76 (387)
                      ++.+++|++||.- .|..|.|-..++.  ..+...   +.....=+-++|+|+..+++.    +...|+|+++|+...+ 
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~----a~S~G~i~vfdl~g~~-   76 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAY----AESTGTIRVFDLMGSE-   76 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEE----EcCCCeEEEEecccce-
Confidence            4567899988876 4677888766542  122222   222233678999997666554    8899999999996533 


Q ss_pred             ccccC--------CCCCeeeEEeccCC------CEEEEecCCCcEEEEeCCCC-----ceeEEcc---CCCCCeEEEEEc
Q 035621           77 LHNIP--------VPEPVAPLATTADG------SYLFTGGLSGNVYAISVPKG-----DILRSFS---AHDKPVSCLKIS  134 (387)
Q Consensus        77 ~~~~~--------~~~~v~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~-----~~~~~~~---~~~~~v~~~~~~  134 (387)
                      +..+.        ....|..+.|.+..      ..|++-...|.++-|-+..+     +..+.+.   .+...|.++.++
T Consensus        77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~  156 (282)
T PF15492_consen   77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH  156 (282)
T ss_pred             eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence            22332        22456667775532      24556667888877765322     2333332   246789999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC------cEEEE
Q 035621          135 PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC------TCKFW  208 (387)
Q Consensus       135 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~------~i~iw  208 (387)
                      |..++|++|+....=   +.                .   -.+....+++-.+..+..--..++...|+      +..+|
T Consensus       157 p~h~LLlVgG~~~~~---~~----------------~---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~  214 (282)
T PF15492_consen  157 PKHRLLLVGGCEQNQ---DG----------------M---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLL  214 (282)
T ss_pred             CCCCEEEEeccCCCC---Cc----------------c---ccccccCceEEEEcCCCCcEEEccccCcccccccccccee
Confidence            998888887653210   00                0   00111122221111111001112222221      12334


Q ss_pred             eCCCCcEEEE-EecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccc
Q 035621          209 RLLNGTHLST-VTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQS  255 (387)
Q Consensus       209 d~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  255 (387)
                      .+-+.+.... -.....|..|..+|||..|++...+|.|.+|++..-.
T Consensus       215 ~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  215 RIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             eccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence            3333222211 1246789999999999999999999999999998743

>PRK02888 nitrous-oxide reductase; Validated

Probab=99.02  E-value=1.5e-06  Score=78.06  Aligned_cols=201  Identities=12%  Similarity=0.074  Sum_probs=122.8

Q ss_pred             ccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEeCCcccccCCCCCC
Q 035621           92 TADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG----VIATVPIFQLVDEHTDDKN  166 (387)
Q Consensus        92 ~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~  166 (387)
                      .|||+.+... -..+.+.+.|.++.+...++.- .+....++++|+++++++.+.+.    ++..-+.            
T Consensus       201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a------------  267 (635)
T PRK02888        201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMA------------  267 (635)
T ss_pred             CCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeecc------------
Confidence            3455444222 2334567778777766666543 23456788999999998887432    1222211            


Q ss_pred             CCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-----CcEEEEEecCCceeEEEeCCCCCeEEEEc
Q 035621          167 PDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN-----GTHLSTVTFPCAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       167 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  241 (387)
                      .....+..+...  .+.  .+.++  +++...  .+++|.+.|..+     .+.+..+..+.....+.++|||+++++++
T Consensus       268 ~e~d~~vvfni~--~ie--a~vkd--GK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVan  339 (635)
T PRK02888        268 AERDWVVVFNIA--RIE--EAVKA--GKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANG  339 (635)
T ss_pred             ccCceEEEEchH--HHH--HhhhC--CCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeC
Confidence            000011111000  000  11223  344444  367899999998     56778888899999999999999998887


Q ss_pred             c-CCcEEEEecccccccccc---ccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC----------ccE
Q 035621          242 S-DGLIYKGLLKYQSRQQMH---KGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK----------RQV  307 (387)
Q Consensus       242 ~-dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~  307 (387)
                      . +..+.++|+.........   ....+.... .-.......+|.++|..+.|--.|..|..||+..          ...
T Consensus       340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaev-evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v  418 (635)
T PRK02888        340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP-ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPI  418 (635)
T ss_pred             CCCCcEEEEEChhhhhhhhccCCccceEEEee-ccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcc
Confidence            6 899999999874321100   011111111 1133456778999999888889999999999987          455


Q ss_pred             EEEeecc
Q 035621          308 VMVLKNE  314 (387)
Q Consensus       308 ~~~~~~~  314 (387)
                      +.++..|
T Consensus       419 ~~k~dV~  425 (635)
T PRK02888        419 VQKLDVH  425 (635)
T ss_pred             eecccCC
Confidence            5555544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.01  E-value=2e-06  Score=67.47  Aligned_cols=194  Identities=18%  Similarity=0.204  Sum_probs=118.5

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCee
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVA   87 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~   87 (387)
                      ..+++.|+..+.+.--|.++|+.+.+-. -..++.+-     ..+....++.|...|.+++.+..+|.....+...+.|.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~s-----a~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk   96 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECS-----AIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK   96 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeee-----eEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhc
Confidence            4578889999999999999998876432 11222222     22233345558899999999999998888887666655


Q ss_pred             e-EEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621           88 P-LATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDK  165 (387)
Q Consensus        88 ~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  165 (387)
                      + ....+++..+..|+.|++.+..|.++..++...+-..+...+-+..| ++. |..+...|.+.--..           
T Consensus        97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vlavt~-----------  164 (354)
T KOG4649|consen   97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVLAVTK-----------  164 (354)
T ss_pred             cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEeccceEEEEcc-----------
Confidence            4 34567899999999999999999999988888764444444455666 444 444444454433322           


Q ss_pred             CCCccceEeeecc--CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCce
Q 035621          166 NPDDLMLQKFVAH--NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAI  225 (387)
Q Consensus       166 ~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v  225 (387)
                        .......+-.|  .++|.+-   |.--+..+..+.-||.+.-+| ..|+.+..+...++|
T Consensus       165 --~~~~~~~~w~~~~~~PiF~s---plcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpI  220 (354)
T KOG4649|consen  165 --NPYSSTEFWAATRFGPIFAS---PLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPI  220 (354)
T ss_pred             --CCCCcceehhhhcCCccccC---ceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCce
Confidence              11111222111  2233221   111123445555677777776 556666655544443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=2.8e-09  Score=89.05  Aligned_cols=223  Identities=12%  Similarity=0.044  Sum_probs=149.8

Q ss_pred             ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC---ceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 035621           79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG---DILRSFSAHDKPVSCLKISPDGSLLISGGD-DGVIATVPI  154 (387)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~  154 (387)
                      .+.|...|+.+..+. .+++.+++.||.++.|--..-   +.+..+..|...|.+++.+-++.++.+.+. |..++++|+
T Consensus         5 symhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    5 SYMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             hhcccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence            344666666655543 468999999999999985331   344556678889999999999999999887 999999998


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCC-ceEEEEeCCCcEEEEeCCCCcE-EEEEe--cCCceeEEEe
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFN-SIIISCSMDCTCKFWRLLNGTH-LSTVT--FPCAIMGLAL  230 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~-~~~~~--~~~~v~~~~~  230 (387)
                      .+..-.          ....+..-.+.+..+ .++...- .+-++.-.++.+.++|-....+ ...+.  |-.+|.++.+
T Consensus        84 En~Dmi----------nmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y  152 (558)
T KOG0882|consen   84 ENFDMI----------NMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY  152 (558)
T ss_pred             eccchh----------hhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence            432111          011111112222211 1111000 2233334578999999775542 22222  6789999999


Q ss_pred             CCCCCeEEEEccCCcEEEEecccc-c-----cccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          231 DPTETDFFAAGSDGLIYKGLLKYQ-S-----RQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       231 ~~~~~~l~~~~~dg~i~i~d~~~~-~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      .|.+..+++....|.|..|..... .     .....+...-............++.|+|+|..+.+-+.|..|+++++.+
T Consensus       153 ~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt  232 (558)
T KOG0882|consen  153 NQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT  232 (558)
T ss_pred             eccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEecc
Confidence            999999999999999999988730 0     0111111111111223456788999999999999999999999999999


Q ss_pred             ccEEEEeec
Q 035621          305 RQVVMVLKN  313 (387)
Q Consensus       305 ~~~~~~~~~  313 (387)
                      |++++.+..
T Consensus       233 GklvqeiDE  241 (558)
T KOG0882|consen  233 GKLVQEIDE  241 (558)
T ss_pred             chhhhhhhc
Confidence            999887764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=5.9e-09  Score=84.27  Aligned_cols=131  Identities=11%  Similarity=0.133  Sum_probs=101.7

Q ss_pred             cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-----cEEEEEecCCceeEEEeCC-CCCeEEEEccCCcEEEEec
Q 035621          178 HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-----THLSTVTFPCAIMGLALDP-TETDFFAAGSDGLIYKGLL  251 (387)
Q Consensus       178 ~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~  251 (387)
                      ..+.|.++.|...  ++++..|..+|.|..+|++.+     .+...+.|++.|+++..-. ++.+|++.+.+|.|.+||.
T Consensus       251 sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~  328 (425)
T KOG2695|consen  251 SKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL  328 (425)
T ss_pred             cchhHHHHHhccc--CCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence            4566777777765  389999999999999999864     5778888999999998877 7899999999999999999


Q ss_pred             cccccccccccceeEeecccccccEEEE--EEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccC
Q 035621          252 KYQSRQQMHKGQELVTLANRHDGVVVSV--MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA  316 (387)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  316 (387)
                      +.-...      .-+....+|...-.-+  -..+....+++++.|...|||.++.|.++.+++....
T Consensus       329 R~~K~~------~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s  389 (425)
T KOG2695|consen  329 RATKCK------KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYS  389 (425)
T ss_pred             hhhhcc------cceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCc
Confidence            873321      1123334565443333  3346677899999999999999999999999886533

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.97  E-value=1.5e-06  Score=71.22  Aligned_cols=214  Identities=17%  Similarity=0.183  Sum_probs=142.3

Q ss_pred             CCCeeeEEecc-CCCEEEEecCCC-cEEEEeCCCCceeEEccCCCCCe--EEEEEcCCCCEEEEEeC-----CCcEEEEe
Q 035621           83 PEPVAPLATTA-DGSYLFTGGLSG-NVYAISVPKGDILRSFSAHDKPV--SCLKISPDGSLLISGGD-----DGVIATVP  153 (387)
Q Consensus        83 ~~~v~~~~~~~-~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----dg~i~iwd  153 (387)
                      +.....++.+| ....++.+-.-| ...+||..+++....+....+.-  =.-.|++||++|++.-.     .|.|-+||
T Consensus         4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd   83 (305)
T PF07433_consen    4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD   83 (305)
T ss_pred             CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence            45567788899 556677776666 57899999999887765433221  24679999999998754     47899999


Q ss_pred             CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEE------------------eCCCcEEEEeCCCCcE
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISC------------------SMDCTCKFWRLLNGTH  215 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~------------------~~d~~i~iwd~~~~~~  215 (387)
                      ...           ....+.++..|.-.-..+.+.|++  ..|+.+                  +.+..+...|..+|+.
T Consensus        84 ~~~-----------~~~ri~E~~s~GIGPHel~l~pDG--~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l  150 (305)
T PF07433_consen   84 AAR-----------GYRRIGEFPSHGIGPHELLLMPDG--ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL  150 (305)
T ss_pred             CcC-----------CcEEEeEecCCCcChhhEEEcCCC--CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce
Confidence            941           445566676666555667777775  444443                  2234577778888988


Q ss_pred             EEEEe-----cCCceeEEEeCCCCCeEEEEccCCc-------EEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621          216 LSTVT-----FPCAIMGLALDPTETDFFAAGSDGL-------IYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN  283 (387)
Q Consensus       216 ~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  283 (387)
                      +....     +...+..+++.++|..++..-..|.       +.+++....  .......  ......-.+.+-+|++++
T Consensus       151 l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p--~~~~~~l~~Y~gSIa~~~  226 (305)
T PF07433_consen  151 LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAP--EEQWRRLNGYIGSIAADR  226 (305)
T ss_pred             eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCC--hHHHHhhCCceEEEEEeC
Confidence            87754     3457999999999877776544332       333332221  0000000  000113356799999999


Q ss_pred             CCCEEEE-EeCCCcEEEEECCCccEEEEeec
Q 035621          284 EGKNLVS-AAEDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       284 ~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      ++.++++ +-..+.+.+||..+++++....-
T Consensus       227 ~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l  257 (305)
T PF07433_consen  227 DGRLIAVTSPRGGRVAVWDAATGRLLGSVPL  257 (305)
T ss_pred             CCCEEEEECCCCCEEEEEECCCCCEeecccc
Confidence            9987754 45678899999999999987653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.95  E-value=1.1e-07  Score=86.07  Aligned_cols=107  Identities=17%  Similarity=0.205  Sum_probs=82.8

Q ss_pred             CccccCCCcEEEeeC----CCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621            1 LLHHLPCNEVILTSS----PEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP   76 (387)
Q Consensus         1 vl~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~   76 (387)
                      +.+|+|...++|+++    ..|.|.||- .+|++..... .+-.+++++|+|...+++.    +-.-|.+.+|...+.+.
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~----gwe~g~~~v~~~~~~e~   93 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQ----GWEMGVSDVQKTNTTET   93 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhh----ccccceeEEEecCCcee
Confidence            467999999999886    458899986 5677544332 2223677999997766554    77889999999876654


Q ss_pred             cc-ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC
Q 035621           77 LH-NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP  113 (387)
Q Consensus        77 ~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  113 (387)
                      -. ...|+.++..+.|+++|..++++..-|.+.+|...
T Consensus        94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            33 33478899999999999999999999999999874

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=3.3e-07  Score=83.15  Aligned_cols=206  Identities=12%  Similarity=0.150  Sum_probs=140.8

Q ss_pred             EEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCC-eEEEEEcCCCCEEEEEeCCCc-----EEEEeCCcccccCC
Q 035621           89 LATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP-VSCLKISPDGSLLISGGDDGV-----IATVPIFQLVDEHT  162 (387)
Q Consensus        89 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~  162 (387)
                      -+|++.+..++.|+.+|.|.+++ +.-+.++.++++... |..+....+..+|++.+.|+.     +++|++.+....  
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n--  105 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN--  105 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC--
Confidence            35678888999999999999987 344555788888777 555544444468888877754     899999553211  


Q ss_pred             CCCCCCccce--Eeeec-----cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC---CC--cEEEEEecCCceeEEEe
Q 035621          163 DDKNPDDLML--QKFVA-----HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL---NG--THLSTVTFPCAIMGLAL  230 (387)
Q Consensus       163 ~~~~~~~~~~--~~~~~-----~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~--~~~~~~~~~~~v~~~~~  230 (387)
                          ....++  ..+..     ...++.+++++.+-  ..++.|-.+|.|..+.-.   ..  +.........+|+.+++
T Consensus       106 ----~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~  179 (933)
T KOG2114|consen  106 ----NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL  179 (933)
T ss_pred             ----CCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence                112233  12222     35678889988874  889999999999988532   11  11222235689999999


Q ss_pred             CCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEE
Q 035621          231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMV  310 (387)
Q Consensus       231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  310 (387)
                      ..++..++-......|.+|.+...       . +.......|...++|-.+++....+++++.. .+.+|+.+..++...
T Consensus       180 ~~d~~s~lFv~Tt~~V~~y~l~gr-------~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfa  250 (933)
T KOG2114|consen  180 RSDGKSVLFVATTEQVMLYSLSGR-------T-PSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFA  250 (933)
T ss_pred             ecCCceeEEEEecceeEEEEecCC-------C-cceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeee
Confidence            999987444444557888888741       1 2333345688889999998766656665444 699999998877777


Q ss_pred             ee
Q 035621          311 LK  312 (387)
Q Consensus       311 ~~  312 (387)
                      +.
T Consensus       251 f~  252 (933)
T KOG2114|consen  251 FE  252 (933)
T ss_pred             ec
Confidence            76

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.90  E-value=9e-09  Score=80.02  Aligned_cols=150  Identities=15%  Similarity=0.187  Sum_probs=94.1

Q ss_pred             eccCCCEEEEecCCCcEEEEeCCCCce-eEEccCCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEeCCcccccCCCC
Q 035621           91 TTADGSYLFTGGLSGNVYAISVPKGDI-LRSFSAHDKPVSCLKISPDGSLLISGGD-----DGVIATVPIFQLVDEHTDD  164 (387)
Q Consensus        91 ~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~  164 (387)
                      .+-.++.+++++.||.+.+++.+.-.. .+.+..-...-.+..+...++.+.++..     -+..+.|+++.        
T Consensus        97 ~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p--------  168 (319)
T KOG4714|consen   97 CTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDP--------  168 (319)
T ss_pred             ccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccc--------
Confidence            333456799999999999998755211 1111111111122223334444444322     12345555521        


Q ss_pred             CCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCC-CCeEEEEc
Q 035621          165 KNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPT-ETDFFAAG  241 (387)
Q Consensus       165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~-~~~l~~~~  241 (387)
                         ....+.... ....|.+++-+|.. .+++++|+.||.+.+||.++......+-  |+.++..+-|+|. +..|++++
T Consensus       169 ---~~t~~~~~~-~~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s  243 (319)
T KOG4714|consen  169 ---IKTLIPSKK-ALDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS  243 (319)
T ss_pred             ---ccccccccc-ccccchhhhCCccc-ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec
Confidence               111111111 22348888888876 5788999999999999999885443332  7889999999995 58899999


Q ss_pred             cCCcEEEEeccc
Q 035621          242 SDGLIYKGLLKY  253 (387)
Q Consensus       242 ~dg~i~i~d~~~  253 (387)
                      +||.+.-||-.+
T Consensus       244 edGslw~wdas~  255 (319)
T KOG4714|consen  244 EDGSLWHWDAST  255 (319)
T ss_pred             CCCcEEEEcCCC
Confidence            999999999874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.89  E-value=1e-07  Score=86.30  Aligned_cols=111  Identities=16%  Similarity=0.172  Sum_probs=91.1

Q ss_pred             EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC
Q 035621           44 LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA  123 (387)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  123 (387)
                      ..|+|...+.+..-++....|.|.||- ++|++.....-+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~t   99 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVET   99 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccC
Confidence            456665544444444566788898884 6788777777777788899999988899998899999999877776666678


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621          124 HDKPVSCLKISPDGSLLISGGDDGVIATVPIF  155 (387)
Q Consensus       124 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  155 (387)
                      |..+|..+.|+|+|..++++..-|.+.+|...
T Consensus       100 h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  100 HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            99999999999999999999999999999874

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.89  E-value=5.5e-09  Score=58.56  Aligned_cols=39  Identities=36%  Similarity=0.695  Sum_probs=36.6

Q ss_pred             CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621          115 GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP  153 (387)
Q Consensus       115 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  153 (387)
                      ++++.++++|...|++++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357888999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=2.5e-07  Score=83.29  Aligned_cols=156  Identities=18%  Similarity=0.285  Sum_probs=118.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCc
Q 035621          125 DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT  204 (387)
Q Consensus       125 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~  204 (387)
                      ...++|++++  +++++-|+.+|.+++++..             +.+ .+...|...        +..|.++++|+.||+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-------------~~~-~~~~~~s~~--------~~~Gey~asCS~DGk   94 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-------------GNP-KTNFDHSSS--------ILEGEYVASCSDDGK   94 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecC-------------Ccc-ccccccccc--------ccCCceEEEecCCCc
Confidence            3456777774  5789999999999999872             222 333334333        344799999999999


Q ss_pred             EEEEeCCCCcEEEEEecCCceeEEEeCCC-----CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEE
Q 035621          205 CKFWRLLNGTHLSTVTFPCAIMGLALDPT-----ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV  279 (387)
Q Consensus       205 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  279 (387)
                      +.|-.+-+.+...++..+.++.+++++|+     .+.+++|+..| +.++.-+--..       ..........++|.++
T Consensus        95 v~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------k~~v~l~~~eG~I~~i  166 (846)
T KOG2066|consen   95 VVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------KDSVVLSEGEGPIHSI  166 (846)
T ss_pred             EEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------ccceeeecCccceEEE
Confidence            99999999999999999999999999998     47899999988 77765543211       1111233567899999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc
Q 035621          280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL  315 (387)
Q Consensus       280 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  315 (387)
                      .|  .|.++|-++.+| |+|||+.+++.+..++...
T Consensus       167 ~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~  199 (846)
T KOG2066|consen  167 KW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPS  199 (846)
T ss_pred             Ee--cCcEEEEecCCC-cEEEeccccceeeccCCCC
Confidence            99  477888887776 9999999999998887554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.84  E-value=1.5e-05  Score=65.47  Aligned_cols=234  Identities=15%  Similarity=0.222  Sum_probs=147.3

Q ss_pred             ccccC-CCcEEEeeCCCCc-EEEEeCCCCceeEeccCCCCCce--eEEEcCcccee-eeccccCCCCCeEEEEEcc-CCC
Q 035621            2 LHHLP-CNEVILTSSPEGP-ITAYNPSSGAILAHFSGSRSPRR--GLTFAGKPFIA-ASHISPTTGSGSVHLYNLW-SST   75 (387)
Q Consensus         2 l~~s~-~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~-~~~~~~~~~d~~v~vw~~~-~~~   75 (387)
                      ++.+| .+..++.+-.-|+ ..+||..+++....+....+.-.  --.|++++.++ .+.--.....|.|-|||.. +.+
T Consensus        10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~   89 (305)
T PF07433_consen   10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR   89 (305)
T ss_pred             eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence            46778 5667777877665 78899999999887765444321  25677754433 2222234567899999998 445


Q ss_pred             cccccCC-CCCeeeEEeccCCCEEEEec------------------CCCcEEEEeCCCCceeEE--c--cCCCCCeEEEE
Q 035621           76 PLHNIPV-PEPVAPLATTADGSYLFTGG------------------LSGNVYAISVPKGDILRS--F--SAHDKPVSCLK  132 (387)
Q Consensus        76 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~--~--~~~~~~v~~~~  132 (387)
                      .+.++.. .-....+.+.|||+.|+++.                  .+-.+.+.|..+|+++..  +  ..|...|+.++
T Consensus        90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa  169 (305)
T PF07433_consen   90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLA  169 (305)
T ss_pred             EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEE
Confidence            5556653 33567788999998887762                  122466777788888776  4  33778899999


Q ss_pred             EcCCCCEEEEEeCCCc-------EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE-EEEeCCCc
Q 035621          133 ISPDGSLLISGGDDGV-------IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII-ISCSMDCT  204 (387)
Q Consensus       133 ~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~d~~  204 (387)
                      +.++|..++..-..|.       +.+++.......       ...+......-.+.+-+|+++.++  .++ +|+=.-+.
T Consensus       170 ~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~-------~~~p~~~~~~l~~Y~gSIa~~~~g--~~ia~tsPrGg~  240 (305)
T PF07433_consen  170 VDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRL-------LPAPEEQWRRLNGYIGSIAADRDG--RLIAVTSPRGGR  240 (305)
T ss_pred             ecCCCcEEEEEecCCCCCccCCeEEEEcCCCccee-------ccCChHHHHhhCCceEEEEEeCCC--CEEEEECCCCCE
Confidence            9999876665544432       333332110000       000001122345678899998875  544 55556788


Q ss_pred             EEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEE
Q 035621          205 CKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY  247 (387)
Q Consensus       205 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  247 (387)
                      +.+||..+++.+...... .+..++-.+++  +++.+..|.+.
T Consensus       241 ~~~~d~~tg~~~~~~~l~-D~cGva~~~~~--f~~ssG~G~~~  280 (305)
T PF07433_consen  241 VAVWDAATGRLLGSVPLP-DACGVAPTDDG--FLVSSGQGQLI  280 (305)
T ss_pred             EEEEECCCCCEeeccccC-ceeeeeecCCc--eEEeCCCccEE
Confidence            999999999988776543 34556666665  44444445543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.82  E-value=1.9e-08  Score=56.35  Aligned_cols=36  Identities=25%  Similarity=0.521  Sum_probs=32.8

Q ss_pred             EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      ...+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            344568999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.81  E-value=1.2e-07  Score=86.31  Aligned_cols=175  Identities=14%  Similarity=0.137  Sum_probs=124.6

Q ss_pred             CCCCCeEEEEEccCCCcccccCCCC-CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC
Q 035621           60 TTGSGSVHLYNLWSSTPLHNIPVPE-PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS  138 (387)
Q Consensus        60 ~~~d~~v~vw~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  138 (387)
                      |+-...+..+|+.+.+..+...... .|.-++  .+++++++|...|+|.+-|.++.+.++++..|.+.|..+..  .|+
T Consensus       153 Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GN  228 (1118)
T KOG1275|consen  153 GGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGN  228 (1118)
T ss_pred             cchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCC
Confidence            3444456666776666555544332 344443  46789999999999999999999999999999999987766  688


Q ss_pred             EEEEEeCC---------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEe
Q 035621          139 LLISGGDD---------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWR  209 (387)
Q Consensus       139 ~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd  209 (387)
                      .|++++..         .-|++||+|.....            ..+.-+.++ .-+.|+|.- ...++.++..|...+-|
T Consensus       229 lLitCG~S~R~~~l~~D~FvkVYDLRmmral------------~PI~~~~~P-~flrf~Psl-~t~~~V~S~sGq~q~vd  294 (1118)
T KOG1275|consen  229 LLITCGYSMRRYNLAMDPFVKVYDLRMMRAL------------SPIQFPYGP-QFLRFHPSL-TTRLAVTSQSGQFQFVD  294 (1118)
T ss_pred             eEEEeecccccccccccchhhhhhhhhhhcc------------CCcccccCc-hhhhhcccc-cceEEEEecccceeecc
Confidence            89988764         45789999654222            222222222 346677765 46788888899999999


Q ss_pred             ---CCCCc-EEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecc
Q 035621          210 ---LLNGT-HLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLK  252 (387)
Q Consensus       210 ---~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  252 (387)
                         +.+.. .+..+. ....+..++++++++.++.|..+|.|.+|.-.
T Consensus       295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence               33331 122222 44569999999999999999999999999843

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.77  E-value=2.2e-05  Score=65.35  Aligned_cols=273  Identities=13%  Similarity=0.143  Sum_probs=157.5

Q ss_pred             CcEEEEeCCCCceeEeccCCCCCceeEEEcCccce--eee----ccccCCCCCeEEEEEccCCCcccccCCCC-------
Q 035621           18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFI--AAS----HISPTTGSGSVHLYNLWSSTPLHNIPVPE-------   84 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~----~~~~~~~d~~v~vw~~~~~~~~~~~~~~~-------   84 (387)
                      +.++|+|..+++.+..+...-.  -.+..+|++..  .++    +..-|-..-.|.+||..+-.+...+..+.       
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            5799999999998877753322  23555664432  222    23334455679999999887776555332       


Q ss_pred             -CeeeEEeccCCCEEEEec--CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           85 -PVAPLATTADGSYLFTGG--LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        85 -~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                       ....++++.|++++++..  -...|.+.|+..++.+..+...  ....+--+ ..+-+.+-|.||++....+...-.. 
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~-  170 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKE-  170 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSE-
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEec-CCCceEEEecCCceEEEEECCCCCE-
Confidence             234578899999888764  3457999999999988877532  12222112 2346888899999988887421100 


Q ss_pred             CCCCCCCccceEeeeccCCCeE-EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE--EEEec-----------CCceeE
Q 035621          162 TDDKNPDDLMLQKFVAHNDSVT-AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL--STVTF-----------PCAIMG  227 (387)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~-----------~~~v~~  227 (387)
                            ..+....|.....++. .-++...  +..++--+.+|.|+--|+......  ..+..           ++...-
T Consensus       171 ------~~~~t~~F~~~~dp~f~~~~~~~~--~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~  242 (342)
T PF06433_consen  171 ------AQKSTKVFDPDDDPLFEHPAYSRD--GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQL  242 (342)
T ss_dssp             ------EEEEEEESSTTTS-B-S--EEETT--TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-
T ss_pred             ------eEeeccccCCCCcccccccceECC--CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceee
Confidence                  0111112222222222 2222222  245555778999999988766532  22221           234455


Q ss_pred             EEeCCCCCeEEEEcc--------CC--cEEEEeccccccccccccceeEeecccccccEEEEEEecCCC-EEEEE-eCCC
Q 035621          228 LALDPTETDFFAAGS--------DG--LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSA-AEDG  295 (387)
Q Consensus       228 ~~~~~~~~~l~~~~~--------dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~dg  295 (387)
                      +++++..+.|++--.        ++  .|.++|+.+        .+.+.++.  -..++.+++.+.+.+ +|++. ..++
T Consensus       243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t--------~krv~Ri~--l~~~~~Si~Vsqd~~P~L~~~~~~~~  312 (342)
T PF06433_consen  243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT--------HKRVARIP--LEHPIDSIAVSQDDKPLLYALSAGDG  312 (342)
T ss_dssp             EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT--------TEEEEEEE--EEEEESEEEEESSSS-EEEEEETTTT
T ss_pred             eeeccccCeEEEEecCCCCCCccCCceEEEEEECCC--------CeEEEEEe--CCCccceEEEccCCCcEEEEEcCCCC
Confidence            778776666665322        22  356666666        23333332  234577999998776 55443 4689


Q ss_pred             cEEEEECCCccEEEEeecc
Q 035621          296 SVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       296 ~i~iwd~~~~~~~~~~~~~  314 (387)
                      .+.+||..+|++++++..-
T Consensus       313 ~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  313 TLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EEEEEETTT--EEEEE---
T ss_pred             eEEEEeCcCCcEEeehhcc
Confidence            9999999999999999854

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=1.2e-06  Score=72.71  Aligned_cols=240  Identities=10%  Similarity=0.090  Sum_probs=139.3

Q ss_pred             EEEEEccCCCcccccC-CCCCeeeEEeccCCC-EEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCC-CEEEE
Q 035621           66 VHLYNLWSSTPLHNIP-VPEPVAPLATTADGS-YLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDG-SLLIS  142 (387)
Q Consensus        66 v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~  142 (387)
                      +++.+..+.+....+. +...|..++|+|..+ ++..++.+..|.+.|+++...+..+..+ ..+.+++|.-|. +++..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            5666655555554333 345799999999766 7888899999999999999988888877 789999998865 47778


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCCccceEeeec--cCCCeEEEEEeeCC----CCceEEEEeCCCcEEEEeCC----C
Q 035621          143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA--HNDSVTAITCCIGS----FNSIIISCSMDCTCKFWRLL----N  212 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~----~~~~l~s~~~d~~i~iwd~~----~  212 (387)
                      |..+|.|.+||+++...           ++..+.+  ...+|..++..+..    .+.+++..+.+  +..|++.    .
T Consensus       254 Gl~nG~VlvyD~R~~~~-----------~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~  320 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEG-----------PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAEC  320 (463)
T ss_pred             eccCceEEEEEccCCCc-----------hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccC
Confidence            88999999999975321           1122211  12233333221110    02445544433  4566543    2


Q ss_pred             CcEEEEEecCCceeEEEeCCCCCeEEEEccCC----cEEEEeccccccccccccceeEeecccc-ccc------EEEEEE
Q 035621          213 GTHLSTVTFPCAIMGLALDPTETDFFAAGSDG----LIYKGLLKYQSRQQMHKGQELVTLANRH-DGV------VVSVMM  281 (387)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~------v~~~~~  281 (387)
                      ..++..+..++...++++++..+.++......    .++..-.+...    ..+..+......+ .+.      -..+.-
T Consensus       321 ~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~----~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~  396 (463)
T KOG1645|consen  321 LPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDF----RDGFPVCGKRRTYFGSKQTKLSTTQAIRA  396 (463)
T ss_pred             CCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeecc----ccCceeeeecccccCCcccccccccceec
Confidence            33444445567777888888766666554321    01100000000    0011111111111 000      011112


Q ss_pred             ecCCCEEE-EEeCCCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621          282 MNEGKNLV-SAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       282 s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  325 (387)
                      .++.++++ +|+.-+.+.+||..+.+.++.+.-.  .+|.+++..
T Consensus       397 ~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~--epv~Dicp~  439 (463)
T KOG1645|consen  397 VEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS--EPVLDICPN  439 (463)
T ss_pred             cccccEEEEecCCcceeEEeccchhheeeecccC--cceeeccee
Confidence            34555555 5666778999999999999999765  356666443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=6.6e-06  Score=75.05  Aligned_cols=203  Identities=14%  Similarity=0.124  Sum_probs=131.6

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCC-ceeEEEcCccceeeeccccCCCCC-eEEEEEccCC---C--
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSP-RRGLTFAGKPFIAASHISPTTGSG-SVHLYNLWSS---T--   75 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~d~-~v~vw~~~~~---~--   75 (387)
                      +|++.+..+|.|+.+|.|.+.+ ...+.++.++.+... |..+....+..++.+..-....+- .+++|+++..   +  
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            6889999999999999999988 356666888888777 555544444333333111011122 6999999643   2  


Q ss_pred             -cc---cccC-----CCCCeeeEEeccCCCEEEEecCCCcEEEEeCC----CCceeEEccCCCCCeEEEEEcCCCCEEEE
Q 035621           76 -PL---HNIP-----VPEPVAPLATTADGSYLFTGGLSGNVYAISVP----KGDILRSFSAHDKPVSCLKISPDGSLLIS  142 (387)
Q Consensus        76 -~~---~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  142 (387)
                       ++   +.+.     .+.++.+++.+.+-+.+|+|-.+|.|..+.-.    .+....-......+|+.+++..+++.++-
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence             22   1122     23578899999999999999999999988531    11111112234679999999988876333


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe
Q 035621          143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT  220 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  220 (387)
                      +..-..|.+|.+..           .......+..|..+++|..+++..  ..+++++ +..+.+||.....+-..+.
T Consensus       189 v~Tt~~V~~y~l~g-----------r~p~~~~ld~~G~~lnCss~~~~t--~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  189 VATTEQVMLYSLSG-----------RTPSLKVLDNNGISLNCSSFSDGT--YQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEecceeEEEEecC-----------CCcceeeeccCCccceeeecCCCC--ccEEEec-CceEEEEcCCCcceeeeec
Confidence            33346788998831           112345577888899999988764  3244443 3568999887655554444

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.72  E-value=2.6e-05  Score=71.00  Aligned_cols=230  Identities=12%  Similarity=0.138  Sum_probs=134.3

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCCCCC-----c-eeEEEcCccceeeec---cccCCCCCeEEEEEccCCCcccc
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSP-----R-RGLTFAGKPFIAASH---ISPTTGSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v-~~~~~~~~~~~~~~~---~~~~~~d~~v~vw~~~~~~~~~~   79 (387)
                      ..++.++.+|.|+-+|.++|+.+..+......     + .+..+..+..+..+.   ...++.++.+..+|..+|+.+..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            67778888999999999999998777543221     1 111222211111110   00113468899999999988776


Q ss_pred             cCCCCC---------------------e-eeEEeccCCCEEEEecCCC------------------cEEEEeCCCCceeE
Q 035621           80 IPVPEP---------------------V-APLATTADGSYLFTGGLSG------------------NVYAISVPKGDILR  119 (387)
Q Consensus        80 ~~~~~~---------------------v-~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~  119 (387)
                      ++...+                     + ...++.+.+..++.++.++                  .|.-+|..+|+...
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            653210                     0 1234455567788887665                  79999999999987


Q ss_pred             EccCCCCCe------EEEEEc----CCCC---EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEE
Q 035621          120 SFSAHDKPV------SCLKIS----PDGS---LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAIT  186 (387)
Q Consensus       120 ~~~~~~~~v------~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  186 (387)
                      .++.-....      ....+.    -++.   .++.++.+|.+...|.            .+++.+-......   ..++
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~------------~tG~~~W~~~~~~---~~~~  335 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDR------------TTGKLISARPEVE---QPMA  335 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEEC------------CCCcEeeEeEeec---cccc
Confidence            764211111      001111    1333   6788889999999988            3444443322110   0111


Q ss_pred             EeeCCCCceEEE-----------------EeCCCcEEEEeCCCCcEEEEEecC---------CceeEEEeCCCCCeEEEE
Q 035621          187 CCIGSFNSIIIS-----------------CSMDCTCKFWRLLNGTHLSTVTFP---------CAIMGLALDPTETDFFAA  240 (387)
Q Consensus       187 ~~~~~~~~~l~s-----------------~~~d~~i~iwd~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~  240 (387)
                      ..|   +..++.                 ...+|.+.-.|+.+++.+.+....         .+...-.....+..++++
T Consensus       336 ~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g  412 (488)
T cd00216         336 YDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAG  412 (488)
T ss_pred             cCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEE
Confidence            122   112221                 124678999999999988877644         111111111256789999


Q ss_pred             ccCCcEEEEecccccc
Q 035621          241 GSDGLIYKGLLKYQSR  256 (387)
Q Consensus       241 ~~dg~i~i~d~~~~~~  256 (387)
                      +.||.++.+|..+++.
T Consensus       413 ~~dG~l~ald~~tG~~  428 (488)
T cd00216         413 AADGYFRAFDATTGKE  428 (488)
T ss_pred             CCCCeEEEEECCCCce
Confidence            9999999999988543

The alignment model contains an 8-bladed beta-propeller.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.71  E-value=9.9e-09  Score=93.03  Aligned_cols=195  Identities=13%  Similarity=0.124  Sum_probs=136.5

Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEeCCcccc
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG--VIATVPIFQLVD  159 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~  159 (387)
                      +....+|++|+.+.++|+.|+..|.|++|++.+|........|..+|+.+.-+.+|..+++.+.-.  -..+|++..   
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s--- 1176 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS--- 1176 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc---
Confidence            446789999999999999999999999999999999999999999999999999998777665443  367898832   


Q ss_pred             cCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-----cCCceeEEEeCCCC
Q 035621          160 EHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-----FPCAIMGLALDPTE  234 (387)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~  234 (387)
                              ...+.+++.    .-.++.|+...  ..-+.|..-....+||+.++.++.++-     ....-+...|+|+.
T Consensus      1177 --------~~~~~Hsf~----ed~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1177 --------TGGPRHSFD----EDKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred             --------ccCcccccc----ccceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence                    233333333    23356666553  223333344568899999998776632     12234778899998


Q ss_pred             CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621          235 TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       235 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      ..++-   ||  .+||.+.......+..         .. .-..-.|+|.|.-++.-++     |||+++.++++....
T Consensus      1243 ~LIln---dG--vLWDvR~~~aIh~FD~---------ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1243 TLILN---DG--VLWDVRIPEAIHRFDQ---------FT-DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred             ceEee---Cc--eeeeeccHHHHhhhhh---------he-ecccccccCCCceEEeech-----hhhhHHHHHHhcCcc
Confidence            88773   33  5799987432221110         11 1112258999988887654     899999888876653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.71  E-value=7.7e-06  Score=72.30  Aligned_cols=226  Identities=15%  Similarity=0.184  Sum_probs=118.8

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++++|+|+++++++ ||.-.|+..........     +.....+|.+...+..     -...+.|.++.--+.+....++
T Consensus        38 ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv-----~~~~~~I~I~kn~~~~~~k~i~  106 (443)
T PF04053_consen   38 LSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAV-----LESSSTIKIYKNFKNEVVKSIK  106 (443)
T ss_dssp             EEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEE-----E-TTS-EEEEETTEE-TT----
T ss_pred             EEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCccEEE-----EECCCeEEEEEcCccccceEEc
Confidence            57899999999855 68888888544333222     2345678887544433     3447889997433344444555


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                      .+..+..+-.   |..|+..+. +.|.+||+.+++.++.+...  +|..+.|++++++++..+.+ .+.+++.....-..
T Consensus       107 ~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~  179 (443)
T PF04053_consen  107 LPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAA  179 (443)
T ss_dssp             -SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHH
T ss_pred             CCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhccc
Confidence            4444444443   777777654 47999999999999998733  48999999999999988866 56676652110000


Q ss_pred             CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc
Q 035621          162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  241 (387)
                       .+...-.........-...|.+..|..+   -++.|. .. +|+-  +-.|+.-..-..+.++.=+.+.|..+.++...
T Consensus       180 -~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~fiYtT-~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~D  251 (443)
T PF04053_consen  180 -IPEEGVEDAFELIHEISERIKSGCWVED---CFIYTT-SN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLID  251 (443)
T ss_dssp             -BTTTB-GGGEEEEEEE-S--SEEEEETT---EEEEE--TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-
T ss_pred             -ccccCchhceEEEEEecceeEEEEEEcC---EEEEEc-CC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEE
Confidence             0000111133333333567888888643   344443 33 6665  34444332223456677777888788899898


Q ss_pred             cCCcEEEEeccc
Q 035621          242 SDGLIYKGLLKY  253 (387)
Q Consensus       242 ~dg~i~i~d~~~  253 (387)
                      .++.+..+.+..
T Consensus       252 r~~~v~~~~ld~  263 (443)
T PF04053_consen  252 RDGNVISYELDL  263 (443)
T ss_dssp             TT--EEEEE--H
T ss_pred             CCCCEEEEEECH
Confidence            999998887754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.69  E-value=0.00026  Score=64.88  Aligned_cols=115  Identities=10%  Similarity=0.038  Sum_probs=68.2

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCC-CCcee---EEE-cCccceeeeccccCCCCCeEEEEEccCCCcccccCC
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSR-SPRRG---LTF-AGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV   82 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~---~~~-~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~   82 (387)
                      +..++.++.++.|+-.|..+|+.+-++.... ..+..   ... +....+....++.++.++.+.-.|..+|+.+.....
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~  148 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN  148 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence            4567777778899999999999887764321 11111   100 111111122334467899999999999998876653


Q ss_pred             CCCe--eeEEecc--CCCEEEEec------CCCcEEEEeCCCCceeEEcc
Q 035621           83 PEPV--APLATTA--DGSYLFTGG------LSGNVYAISVPKGDILRSFS  122 (387)
Q Consensus        83 ~~~v--~~~~~~~--~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~  122 (387)
                      ...-  ..+.-+|  .+..++++.      .+|.|..+|.++|+.+..+.
T Consensus       149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            2110  1111122  123455543      26889999999998876653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.68  E-value=9.2e-06  Score=72.55  Aligned_cols=128  Identities=17%  Similarity=0.209  Sum_probs=88.2

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI-   80 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~-   80 (387)
                      +++..+++++.|+.-|.+++|+-..++....- .+..+.+..+..++...    .++.|+..|.|.++-++.+.+.... 
T Consensus        40 c~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~----lvAagt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   40 CVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY----LVAAGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             EeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH----hhhhhcCCceEEeehhhccCCCccee
Confidence            56678899999999999999997665543222 22334455566777433    3344899999999988775432221 


Q ss_pred             ------CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc----eeEEccCCCCCeEEEEEc
Q 035621           81 ------PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD----ILRSFSAHDKPVSCLKIS  134 (387)
Q Consensus        81 ------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~  134 (387)
                            .|+..|++++|++++..+++|...|.|..-.+....    ..+.+-.....|..+...
T Consensus       116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence                  156789999999999999999999999998887621    112222334566666654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.67  E-value=4.3e-05  Score=60.22  Aligned_cols=103  Identities=9%  Similarity=0.007  Sum_probs=67.9

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCcee-EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCe
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRG-LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPV   86 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v   86 (387)
                      |++++.|...|.+++.+.++|.....+..-. .|.+ ....+    ....+..++.|+..+..|..+..++...+..+.+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~----~~glIycgshd~~~yalD~~~~~cVykskcgG~~  137 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDF----DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT  137 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcC----CCceEEEecCCCcEEEecccccceEEecccCCce
Confidence            6788999999999999999998877765322 2222 12223    2233445889999999999998888887766543


Q ss_pred             -eeEEeccCCCEEEEecCCCcEEEEeCCCC
Q 035621           87 -APLATTADGSYLFTGGLSGNVYAISVPKG  115 (387)
Q Consensus        87 -~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  115 (387)
                       ..-+..|-...|+.+...|.+.--+.+..
T Consensus       138 f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  138 FVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             eccceecCCCceEEEEeccceEEEEccCCC
Confidence             33455553344555555666655555444

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1.9e-06  Score=71.58  Aligned_cols=234  Identities=11%  Similarity=0.055  Sum_probs=133.9

Q ss_pred             ccccCCCc-EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc-ccc
Q 035621            2 LHHLPCNE-VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP-LHN   79 (387)
Q Consensus         2 l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~-~~~   79 (387)
                      ++|||..+ ++..++.+..|+|.|+++...+..+..+ .++++++|.-+.   ...+..|...|.|.+||+...+- +..
T Consensus       199 lafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde---~h~IYaGl~nG~VlvyD~R~~~~~~~e  274 (463)
T KOG1645|consen  199 LAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE---RHVIYAGLQNGMVLVYDMRQPEGPLME  274 (463)
T ss_pred             hccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC---cceeEEeccCceEEEEEccCCCchHhh
Confidence            68999877 8889999999999999999999888877 779999998753   44556688999999999976532 222


Q ss_pred             cC---CCCCeeeEEec------cCCCEEEEecCCCcEEEEeCCCC--ceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCC-
Q 035621           80 IP---VPEPVAPLATT------ADGSYLFTGGLSGNVYAISVPKG--DILRSFS-AHDKPVSCLKISPDGSLLISGGDD-  146 (387)
Q Consensus        80 ~~---~~~~v~~~~~~------~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-  146 (387)
                      +.   ...+|..++.-      +.|.+|+....+  +..|++...  .....++ +..+...++++.+-.+.++..... 
T Consensus       275 ~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~  352 (463)
T KOG1645|consen  275 LVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSN  352 (463)
T ss_pred             hhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCC
Confidence            22   12344444332      334444444332  566665322  1122121 234556667776644444333222 


Q ss_pred             C------cEEEEeCCcccccCCCCCCCCccceEee-ecc-CCCe-----EEEEEeeCCCCceEEEEeCCCcEEEEeCCCC
Q 035621          147 G------VIATVPIFQLVDEHTDDKNPDDLMLQKF-VAH-NDSV-----TAITCCIGSFNSIIISCSMDCTCKFWRLLNG  213 (387)
Q Consensus       147 g------~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i-----~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  213 (387)
                      .      .+-.. ...          ..+.++... ..+ .++-     +..-+.+..+.-++..+...+.+.+||..++
T Consensus       353 pn~p~~r~il~~-~d~----------~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~  421 (463)
T KOG1645|consen  353 PNFPQSRFILGR-IDF----------RDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF  421 (463)
T ss_pred             CCCccceeeeee-ecc----------ccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence            1      01110 000          011111100 011 0000     0011122222334455566688999999999


Q ss_pred             cEEEEEecCCceeEEEeCC-CCCeEEEEccCCcEEEEecc
Q 035621          214 THLSTVTFPCAIMGLALDP-TETDFFAAGSDGLIYKGLLK  252 (387)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~  252 (387)
                      +.++++....++..++... ++.-++..-.|..+++|..+
T Consensus       422 evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  422 EVVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             heeeecccCcceeecceeecCCcchhhheecceEEEEecC
Confidence            9999999888998887764 33333344445567776543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=4.8e-06  Score=75.31  Aligned_cols=181  Identities=16%  Similarity=0.186  Sum_probs=126.1

Q ss_pred             CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE
Q 035621           40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR  119 (387)
Q Consensus        40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  119 (387)
                      .+.|++++...      ++-|+.+|.|++.+.+.. +...+.|...      ..+|.++++|+.||.|.|..+-+.+...
T Consensus        41 ~is~~av~~~~------~~~GtH~g~v~~~~~~~~-~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   41 AISCCAVHDKF------FALGTHRGAVYLTTCQGN-PKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             HHHHHHhhcce------eeeccccceEEEEecCCc-cccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            35666665533      333789999999987433 3333333332      5689999999999999999998888777


Q ss_pred             EccCCCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCc
Q 035621          120 SFSAHDKPVSCLKISPD-----GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS  194 (387)
Q Consensus       120 ~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  194 (387)
                      ++. ...++.+++++|+     .+.+++|+.-| +.++.-.=+          .......+....++|.++.|.    ++
T Consensus       108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl----------gnk~~v~l~~~eG~I~~i~W~----g~  171 (846)
T KOG2066|consen  108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL----------GNKDSVVLSEGEGPIHSIKWR----GN  171 (846)
T ss_pred             eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh----------cCccceeeecCccceEEEEec----Cc
Confidence            665 4678999999997     56899999988 766643111          011111455567899999985    47


Q ss_pred             eEEEEeCCCcEEEEeCCCCcEEEEEecCC-------ceeEEEeCCCCCeEEEEccCCcEEEEecc
Q 035621          195 IIISCSMDCTCKFWRLLNGTHLSTVTFPC-------AIMGLALDPTETDFFAAGSDGLIYKGLLK  252 (387)
Q Consensus       195 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  252 (387)
                      +++-++.+| |++||+.+++.+..++.+.       ....+.|.+.. .|+.| ...+|++..++
T Consensus       172 lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  172 LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIK  233 (846)
T ss_pred             EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEe
Confidence            888888777 9999999999888887432       24467777654 34444 44478888777

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.64  E-value=2.2e-05  Score=70.81  Aligned_cols=218  Identities=13%  Similarity=0.093  Sum_probs=131.1

Q ss_pred             CCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC----cEEEEeCCCCceeEEccCCCCCeEEEEEcC
Q 035621           60 TTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG----NVYAISVPKGDILRSFSAHDKPVSCLKISP  135 (387)
Q Consensus        60 ~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  135 (387)
                      .-..+.+.+.|.++.+...++........++++++|+++++.+.+.    ++...+..+...+..+...  .+  -++.+
T Consensus       211 ~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vk  286 (635)
T PRK02888        211 KKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVK  286 (635)
T ss_pred             cceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhh
Confidence            3345678888888888777777777778899999999998886432    3333333222222222110  00  13345


Q ss_pred             CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE
Q 035621          136 DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH  215 (387)
Q Consensus       136 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  215 (387)
                      +|++...  .++.|.+.|.....        .....+.....-......+.++|++ ..+++++..+.++.|.|+.+.+.
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~--------~~~~~v~~yIPVGKsPHGV~vSPDG-kylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAA--------NAGSALTRYVPVPKNPHGVNTSPDG-KYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccc--------cCCcceEEEEECCCCccceEECCCC-CEEEEeCCCCCcEEEEEChhhhh
Confidence            7776665  35789999983200        0012333333345566788999986 34455555689999999988653


Q ss_pred             ------------EEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc-cccceeEe-----ecccccccEE
Q 035621          216 ------------LSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-HKGQELVT-----LANRHDGVVV  277 (387)
Q Consensus       216 ------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~-----~~~~~~~~v~  277 (387)
                                  ..+..........+|.++|+...+-.-|..|..|++...-.... .....+..     ...+|.....
T Consensus       356 ~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~  435 (635)
T PRK02888        356 LFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASM  435 (635)
T ss_pred             hhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecC
Confidence                        44555566778899999998777777899999999986311100 00011111     1223333323


Q ss_pred             EEEEecCCCEEEEEe
Q 035621          278 SVMMMNEGKNLVSAA  292 (387)
Q Consensus       278 ~~~~s~~~~~l~s~~  292 (387)
                      .=.-.|||++|++..
T Consensus       436 g~t~~~dgk~l~~~n  450 (635)
T PRK02888        436 GETKEADGKWLVSLN  450 (635)
T ss_pred             CCcCCCCCCEEEEcc
Confidence            333467888888763

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.61  E-value=1.7e-08  Score=91.59  Aligned_cols=208  Identities=15%  Similarity=0.160  Sum_probs=140.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CCccccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-STPLHNI   80 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~~~~~   80 (387)
                      ++||-+.+.|+.|+..|.|++|++.+|.......+|..+|+-+.-+.++.....  .++...--..+|+... +.+.+.+
T Consensus      1107 ~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Lt--sss~S~PlsaLW~~~s~~~~~Hsf 1184 (1516)
T KOG1832|consen 1107 IAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLT--SSSSSSPLSALWDASSTGGPRHSF 1184 (1516)
T ss_pred             EEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeee--eccccCchHHHhccccccCccccc
Confidence            478899999999999999999999999999999999999999887764432211  1122233567898743 3333333


Q ss_pred             CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc-c---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF-S---AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                         ..-.++.|+.....-+.|.......+||++++..+.++ .   +....-++..|+|+.++++   .||  .+||++.
T Consensus      1185 ---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1185 ---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRI 1256 (1516)
T ss_pred             ---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeecc
Confidence               34566778776555566666677999999998876653 2   1222336788999988776   455  5799943


Q ss_pred             ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCe
Q 035621          157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETD  236 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  236 (387)
                                  ...++.|......+ .-.|+|.+  ..++.-+     .|||+++.+.++..+.- .-..+.|+..|..
T Consensus      1257 ------------~~aIh~FD~ft~~~-~G~FHP~g--~eVIINS-----EIwD~RTF~lLh~VP~L-dqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1257 ------------PEAIHRFDQFTDYG-GGGFHPSG--NEVIINS-----EIWDMRTFKLLHSVPSL-DQCAVTFNSTGDV 1315 (1516)
T ss_pred             ------------HHHHhhhhhheecc-cccccCCC--ceEEeec-----hhhhhHHHHHHhcCccc-cceEEEeccCccc
Confidence                        34455554433222 23578875  5555544     39999998887776522 2245778888876


Q ss_pred             EEEE
Q 035621          237 FFAA  240 (387)
Q Consensus       237 l~~~  240 (387)
                      +++.
T Consensus      1316 mYa~ 1319 (1516)
T KOG1832|consen 1316 MYAM 1319 (1516)
T ss_pred             hhhh
Confidence            6654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.56  E-value=5.1e-05  Score=72.13  Aligned_cols=212  Identities=14%  Similarity=0.072  Sum_probs=131.3

Q ss_pred             CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC--CcccccC
Q 035621           84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI--FQLVDEH  161 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~  161 (387)
                      ..|.++.|..+.+.++.+...|.|.+-|.++.... ....-...|.+++|+||+..++..+..+++.+-+-  .-.....
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            57999999999999999999999999998776532 23334678999999999999999988887755332  0000000


Q ss_pred             C-CCCC--------CCccceEeeec---------------------cCCCeEEEEEeeCCCCceEEEEe----CC-CcEE
Q 035621          162 T-DDKN--------PDDLMLQKFVA---------------------HNDSVTAITCCIGSFNSIIISCS----MD-CTCK  206 (387)
Q Consensus       162 ~-~~~~--------~~~~~~~~~~~---------------------~~~~i~~~~~~~~~~~~~l~s~~----~d-~~i~  206 (387)
                      . ....        .-++.-..+.+                     ..+.-++|.|.-+  |.++++..    .+ +.|+
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgD--g~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGD--GEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccC--CcEEEEEEEeccCCceeEE
Confidence            0 0000        00000011110                     1111234666544  68888732    23 7899


Q ss_pred             EEeCCCCcEEEEE-ecCCceeEEEeCCCCCeEEEE---ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEe
Q 035621          207 FWRLLNGTHLSTV-TFPCAIMGLALDPTETDFFAA---GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMM  282 (387)
Q Consensus       207 iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  282 (387)
                      +||-+ |..-..- +....-.+++|-|.|..+++-   ++|+.|.+|..+.-.....      ..........|..++|+
T Consensus       226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f------~l~~p~de~~ve~L~Wn  298 (1265)
T KOG1920|consen  226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEF------VLPFPLDEKEVEELAWN  298 (1265)
T ss_pred             Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccc------ccCCcccccchheeeec
Confidence            99976 4322211 133455689999999998886   3466788887654221111      10111233448999999


Q ss_pred             cCCCEEEE---EeCCCcEEEEECCCc
Q 035621          283 NEGKNLVS---AAEDGSVYIWEIEKR  305 (387)
Q Consensus       283 ~~~~~l~s---~~~dg~i~iwd~~~~  305 (387)
                      .++..|++   ......|++|-+.+.
T Consensus       299 s~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  299 SNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             CCCCceeeeecccccceEEEEEecCe
Confidence            99999887   444555999998875

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.54  E-value=7.8e-05  Score=65.05  Aligned_cols=262  Identities=16%  Similarity=0.130  Sum_probs=134.4

Q ss_pred             cCCCcEEEee---------CCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC
Q 035621            5 LPCNEVILTS---------SPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST   75 (387)
Q Consensus         5 s~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~   75 (387)
                      |||+++++..         +..+.+.|||+++++....... ...+....|+|++...+-     ..++.|.+++..++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~-----v~~~nly~~~~~~~~   74 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAF-----VRDNNLYLRDLATGQ   74 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEE-----EETTEEEEESSTTSE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEE-----EecCceEEEECCCCC
Confidence            7899888873         2347799999998776554433 667889999997665543     357889999886664


Q ss_pred             cccccC-C-----------------CCCeeeEEeccCCCEEEEecCC-Cc------------------------------
Q 035621           76 PLHNIP-V-----------------PEPVAPLATTADGSYLFTGGLS-GN------------------------------  106 (387)
Q Consensus        76 ~~~~~~-~-----------------~~~v~~~~~~~~~~~l~~~~~d-g~------------------------------  106 (387)
                      ..+.-. .                 -+.-..+-|+||+++|+....| ..                              
T Consensus        75 ~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~  154 (353)
T PF00930_consen   75 ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDP  154 (353)
T ss_dssp             EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS-
T ss_pred             eEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCc
Confidence            332211 1                 1223568899999988866433 22                              


Q ss_pred             -----EEEEeCCCCceeE-E-c---cCCCCCeEEEEEcCCCCEEEEE--eCCCc---EEEEeCCcccccCCCCCCCCccc
Q 035621          107 -----VYAISVPKGDILR-S-F---SAHDKPVSCLKISPDGSLLISG--GDDGV---IATVPIFQLVDEHTDDKNPDDLM  171 (387)
Q Consensus       107 -----i~i~d~~~~~~~~-~-~---~~~~~~v~~~~~~~~~~~l~~~--~~dg~---i~iwd~~~~~~~~~~~~~~~~~~  171 (387)
                           +.++|+.+++... . .   ..-...+..+.|.++++.|+..  ..+..   +.+.|...          .....
T Consensus       155 np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t----------g~~~~  224 (353)
T PF00930_consen  155 NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST----------GETRV  224 (353)
T ss_dssp             --EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT----------TTCEE
T ss_pred             CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC----------CceeE
Confidence                 3334444443211 0 0   1223456778888887734333  23322   34444411          01111


Q ss_pred             eEeeeccCCC---eEEEEEe-eCCCCceEEEEeCCCc--EEEEeCCCCcEEEEEe-cCCceeE-EEeCCCCCeEE-EEcc
Q 035621          172 LQKFVAHNDS---VTAITCC-IGSFNSIIISCSMDCT--CKFWRLLNGTHLSTVT-FPCAIMG-LALDPTETDFF-AAGS  242 (387)
Q Consensus       172 ~~~~~~~~~~---i~~~~~~-~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~-~~~~v~~-~~~~~~~~~l~-~~~~  242 (387)
                      +. .......   -....+. +++ +.++.....||.  |.+++...+. .+.+. ..-.|.. +.++++++.++ ++..
T Consensus       225 ~~-~e~~~~Wv~~~~~~~~~~~~~-~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~  301 (353)
T PF00930_consen  225 VL-EETSDGWVDVYDPPHFLGPDG-NEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANG  301 (353)
T ss_dssp             EE-EEESSSSSSSSSEEEE-TTTS-SEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred             EE-EecCCcceeeecccccccCCC-CEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecC
Confidence            11 1111121   2234443 443 456666667775  4455555554 33444 4455644 67888876655 4443


Q ss_pred             C--CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621          243 D--GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA  292 (387)
Q Consensus       243 d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  292 (387)
                      +  +.-.+|.+....      +..+..+. ...+.-..+.|||++++++-.+
T Consensus       302 ~~p~~r~lY~v~~~~------~~~~~~LT-~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  302 DNPGERHLYRVSLDS------GGEPKCLT-CEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             GGTTSBEEEEEETTE------TTEEEESS-TTSSTTEEEEE-TTSSEEEEEE
T ss_pred             CCCCceEEEEEEeCC------CCCeEecc-CCCCCceEEEECCCCCEEEEEE
Confidence            2  333444433320      11222221 1111116899999999887543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.53  E-value=2.9e-05  Score=68.54  Aligned_cols=208  Identities=13%  Similarity=0.065  Sum_probs=126.9

Q ss_pred             cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEE
Q 035621           19 PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYL   98 (387)
Q Consensus        19 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   98 (387)
                      .+.+=|.. +...+.+......+..-.|+|+....+...........+.++++++++.......+..-...+|+|||+.|
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l  252 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKL  252 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEE
Confidence            34444433 55555555455556667777755443322222222267999999999888888777788888999999887


Q ss_pred             EEec-CCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCc--EEEEeCCcccccCCCCCCCCccce
Q 035621           99 FTGG-LSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG-DDGV--IATVPIFQLVDEHTDDKNPDDLML  172 (387)
Q Consensus        99 ~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~~  172 (387)
                      +... .||  .|.++|+..++..+ +..-.+.-..=.|+|||+.++-.+ ..|.  |.+++.             .+...
T Consensus       253 ~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~-------------~g~~~  318 (425)
T COG0823         253 AFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL-------------EGSQV  318 (425)
T ss_pred             EEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECC-------------CCCce
Confidence            7654 455  57778887776433 443333333567999999776655 4555  444444             22222


Q ss_pred             EeeeccCCCeEEEEEeeCCCCceEEEEeC-CCc--EEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC
Q 035621          173 QKFVAHNDSVTAITCCIGSFNSIIISCSM-DCT--CKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD  243 (387)
Q Consensus       173 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  243 (387)
                      ..+......-..-.++|++  ++++..+. +|.  |.+.|+.++...+.+........-.|.|+++.+...+..
T Consensus       319 ~riT~~~~~~~~p~~SpdG--~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         319 TRLTFSGGGNSNPVWSPDG--DKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             eEeeccCCCCcCccCCCCC--CEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence            3333332222256667775  66665553 344  677777776655555555556667788888877765543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.53  E-value=5.6e-08  Score=85.18  Aligned_cols=188  Identities=15%  Similarity=0.203  Sum_probs=124.4

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCce--eEeccCCCCCceeEEEcCccceeeeccccC----CCCCeEEEEEccCC--Ccccc
Q 035621            8 NEVILTSSPEGPITAYNPSSGAI--LAHFSGSRSPRRGLTFAGKPFIAASHISPT----TGSGSVHLYNLWSS--TPLHN   79 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~d~~v~vw~~~~~--~~~~~   79 (387)
                      ..+++.|..+|.|.+-.......  -....+|..+.++++|++-   ..+.++.|    -.|..+.|||+.++  .+...
T Consensus        70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL---Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~  146 (783)
T KOG1008|consen   70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL---DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES  146 (783)
T ss_pred             hhhhhhccccCceEEeecCCcccccceecccccccccccccccc---cHHHHHhhhhhhcccCCccceecccccCCCccc
Confidence            35788999999999988764432  2234678888999999982   22333323    34678999999877  33322


Q ss_pred             cC----CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 035621           80 IP----VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVP  153 (387)
Q Consensus        80 ~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd  153 (387)
                      ..    .......++|..+.+++.+|.....+.++|++.. .....+  .+..+..+...| .++++++-. ||.|.+||
T Consensus       147 ~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD  223 (783)
T KOG1008|consen  147 PLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWD  223 (783)
T ss_pred             cccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeecc
Confidence            22    2245668889889999999998889999998733 222222  244567778888 677777655 99999999


Q ss_pred             C-CcccccCCCCCCCCccceEeeec----cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC
Q 035621          154 I-FQLVDEHTDDKNPDDLMLQKFVA----HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN  212 (387)
Q Consensus       154 ~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  212 (387)
                      . ++.           ..++..+..    ....+..++|+|...|.+.+..-..++|+.||+..
T Consensus       224 ~~rni-----------enpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  224 TYRNI-----------ENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             chhhh-----------ccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            4 221           112222111    12247889999998554444444568999999863

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.48  E-value=0.00057  Score=58.32  Aligned_cols=282  Identities=14%  Similarity=0.089  Sum_probs=120.9

Q ss_pred             cccCCCcEEEeeC-CCC--cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621            3 HHLPCNEVILTSS-PEG--PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         3 ~~s~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~   79 (387)
                      +|.+||+.|+.++ .||  .+++.|+.+++..+--.+.........++++.....-    ......++-.|+++.+....
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y----v~~~~~l~~vdL~T~e~~~v  117 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY----VKNGRSLRRVDLDTLEERVV  117 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE----EETTTEEEEEETTT--EEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE----EECCCeEEEEECCcCcEEEE
Confidence            5888997666554 344  5777889888876544432233334555664322211    12345788888888876665


Q ss_pred             cCCCCCee-eEEec--cCCCEEEEec---CC-------------------CcEEEEeCCCCceeEEccCCCCCeEEEEEc
Q 035621           80 IPVPEPVA-PLATT--ADGSYLFTGG---LS-------------------GNVYAISVPKGDILRSFSAHDKPVSCLKIS  134 (387)
Q Consensus        80 ~~~~~~v~-~~~~~--~~~~~l~~~~---~d-------------------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~  134 (387)
                      +..++.-. ...|.  .++..++-.-   .+                   ..|.-.|+.+|+....+. -...+..+.|+
T Consensus       118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fs  196 (386)
T PF14583_consen  118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFS  196 (386)
T ss_dssp             EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEE
T ss_pred             EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccC
Confidence            65554332 34553  3455443221   11                   135566777777655554 35678899999


Q ss_pred             CCCCEEEEEeCCC-----cEEEEeCCcccccCCCCCCCCccceEeeeccC--CCeEEEEEeeCCCCceEEEE----eCCC
Q 035621          135 PDGSLLISGGDDG-----VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN--DSVTAITCCIGSFNSIIISC----SMDC  203 (387)
Q Consensus       135 ~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~s~----~~d~  203 (387)
                      |....+++=+..|     .-+||-+..           .+.....+..+.  ..+..=-|.|++ ..+..-+    +.+.
T Consensus       197 P~dp~li~fCHEGpw~~Vd~RiW~i~~-----------dg~~~~~v~~~~~~e~~gHEfw~~DG-~~i~y~~~~~~~~~~  264 (386)
T PF14583_consen  197 PTDPTLIMFCHEGPWDLVDQRIWTINT-----------DGSNVKKVHRRMEGESVGHEFWVPDG-STIWYDSYTPGGQDF  264 (386)
T ss_dssp             TTEEEEEEEEE-S-TTTSS-SEEEEET-----------TS---EESS---TTEEEEEEEE-TTS-S-EEEEEEETTT--E
T ss_pred             CCCCCEEEEeccCCcceeceEEEEEEc-----------CCCcceeeecCCCCcccccccccCCC-CEEEEEeecCCCCce
Confidence            9554444433322     135665532           111122222221  122233455554 1222211    2244


Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCC----------------cEEEEeccccccccccccceeEe
Q 035621          204 TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDG----------------LIYKGLLKYQSRQQMHKGQELVT  267 (387)
Q Consensus       204 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------------~i~i~d~~~~~~~~~~~~~~~~~  267 (387)
                      .|.-+|+.+++.......+ ....+--++||++++-=+.|.                .|++++...+.............
T Consensus       265 ~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~  343 (386)
T PF14583_consen  265 WIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWK  343 (386)
T ss_dssp             EEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE------
T ss_pred             EEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcce
Confidence            5777788887664433333 345666778888776544432                34556655432211110000001


Q ss_pred             ecccccc-cEEEEEEecCCCEEE-EEeCCCcEEEEEC
Q 035621          268 LANRHDG-VVVSVMMMNEGKNLV-SAAEDGSVYIWEI  302 (387)
Q Consensus       268 ~~~~~~~-~v~~~~~s~~~~~l~-s~~~dg~i~iwd~  302 (387)
                      ...++.. .=....|+|||++++ ++...|...||-+
T Consensus       344 v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  344 VLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             -BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             eecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence            1111111 124578999999766 5556777776644

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.47  E-value=0.00059  Score=60.51  Aligned_cols=258  Identities=13%  Similarity=0.124  Sum_probs=142.9

Q ss_pred             ccccCCCcEEEeeCCC----------C-cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEE
Q 035621            2 LHHLPCNEVILTSSPE----------G-PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYN   70 (387)
Q Consensus         2 l~~s~~~~~l~~~~~d----------g-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~   70 (387)
                      ++.+|.|..+|....+          . .|.||+. +|+.+.++.-..+.+.++.|..+..+..     ...||.++++|
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~Lvv-----V~~dG~v~vy~  107 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVV-----VQSDGTVRVYD  107 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEE-----EEcCCEEEEEe
Confidence            4556777666665443          1 4899995 6777777654447899999988544433     46899999999


Q ss_pred             ccCCCcccccCCC-----CC-----eeeEEeccCCCEEEEecCCCcEEEEeCCCCc-eeEEc---cC-----CCC-CeEE
Q 035621           71 LWSSTPLHNIPVP-----EP-----VAPLATTADGSYLFTGGLSGNVYAISVPKGD-ILRSF---SA-----HDK-PVSC  130 (387)
Q Consensus        71 ~~~~~~~~~~~~~-----~~-----v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---~~-----~~~-~v~~  130 (387)
                      +. |+.  .+...     ..     +....+..+|-.++  ..++.+.+.+--... ..+.+   ..     +.. ....
T Consensus       108 ~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~  182 (410)
T PF04841_consen  108 LF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTV  182 (410)
T ss_pred             CC-Cce--eechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCccccccccccccc
Confidence            85 333  22211     12     22223333553333  344555444322211 11111   10     000 0001


Q ss_pred             -EEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEe
Q 035621          131 -LKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWR  209 (387)
Q Consensus       131 -~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd  209 (387)
                       ..++.+....+....++.+.+.+-.            ..   ..+ ...+++..++++|++  ++++.-..+|.+.+.+
T Consensus       183 i~~l~~~~~~~i~~~~g~~i~~i~~~------------~~---~~i-~~~~~i~~iavSpng--~~iAl~t~~g~l~v~s  244 (410)
T PF04841_consen  183 IPLLSSDRVVEILLANGETIYIIDEN------------SF---KQI-DSDGPIIKIAVSPNG--KFIALFTDSGNLWVVS  244 (410)
T ss_pred             ceEeecCcceEEEEecCCEEEEEEcc------------cc---ccc-cCCCCeEEEEECCCC--CEEEEEECCCCEEEEE
Confidence             2234444445555555555544321            00   011 124689999999985  8899888999999998


Q ss_pred             CCCCcEEEEEecC--CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCE
Q 035621          210 LLNGTHLSTVTFP--CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKN  287 (387)
Q Consensus       210 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  287 (387)
                      ..-.+.+..+...  ..+..+.|.-++..++.-  ...+.+..                    ....   .+.|..++..
T Consensus       245 sDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg--------------------~~~~---~~~~~~~~~~  299 (410)
T PF04841_consen  245 SDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG--------------------PDGD---SISFWYDGPV  299 (410)
T ss_pred             CcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC--------------------CCCC---ceEEeccCce
Confidence            7666666666644  566777776553322222  22232221                    1122   2345445556


Q ss_pred             EEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          288 LVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       288 l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      ++..-.|| +||..-+.-+.++.++..
T Consensus       300 ~l~~E~DG-~riit~~~~~~l~~Vp~~  325 (410)
T PF04841_consen  300 ILVSEIDG-VRIITSTSHEFLQRVPDS  325 (410)
T ss_pred             EEeccCCc-eEEEeCCceEEEEECCHH
Confidence            66666777 999988888888887643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.47  E-value=0.00013  Score=60.95  Aligned_cols=238  Identities=11%  Similarity=0.086  Sum_probs=135.9

Q ss_pred             cccCCCcEEEeeC----------CCCcEEEEeCCCCceeEeccCCCC-------CceeEEEcCccceeeeccccCCCCCe
Q 035621            3 HHLPCNEVILTSS----------PEGPITAYNPSSGAILAHFSGSRS-------PRRGLTFAGKPFIAASHISPTTGSGS   65 (387)
Q Consensus         3 ~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~d~~   65 (387)
                      ..|||++.+++++          ..-.|.+||.++-....++.-...       ....++++.++.+..-+-  .+-...
T Consensus        42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N--~TPa~S  119 (342)
T PF06433_consen   42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN--FTPATS  119 (342)
T ss_dssp             EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE--ESSSEE
T ss_pred             eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEc--cCCCCe
Confidence            4689999888743          344699999999887775532221       123344554333322111  234456


Q ss_pred             EEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC-CCceeEE----ccCCCCCe-EEEEEcCCCCE
Q 035621           66 VHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP-KGDILRS----FSAHDKPV-SCLKISPDGSL  139 (387)
Q Consensus        66 v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~----~~~~~~~v-~~~~~~~~~~~  139 (387)
                      |.|-|+..++.+..+..++...-.-..+  .-+.+-+.||.+.-..+. .|+...+    |.....++ ..-++...+..
T Consensus       120 VtVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~  197 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR  197 (342)
T ss_dssp             EEEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred             EEEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence            7777777777777666655433333322  346677789999888886 5554422    21222222 23344445555


Q ss_pred             EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec----------cCCCeEEEEEeeCCCCceEEEEe--CC-----
Q 035621          140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA----------HNDSVTAITCCIGSFNSIIISCS--MD-----  202 (387)
Q Consensus       140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~l~s~~--~d-----  202 (387)
                      ++-.+.+|.|+-.|+...          .......+..          ..+.-.-+++++.. +++++.-.  .+     
T Consensus       198 ~~F~Sy~G~v~~~dlsg~----------~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~-~rlyvLMh~g~~gsHKd  266 (342)
T PF06433_consen  198 LYFVSYEGNVYSADLSGD----------SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS-GRLYVLMHQGGEGSHKD  266 (342)
T ss_dssp             EEEEBTTSEEEEEEETTS----------SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT-TEEEEEEEE--TT-TTS
T ss_pred             EEEEecCCEEEEEeccCC----------cccccCcccccCccccccCcCCcceeeeeecccc-CeEEEEecCCCCCCccC
Confidence            666788899888887321          1111111110          01223335555543 23322211  11     


Q ss_pred             --CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCC-eEEEE-ccCCcEEEEeccccc
Q 035621          203 --CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTET-DFFAA-GSDGLIYKGLLKYQS  255 (387)
Q Consensus       203 --~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~i~d~~~~~  255 (387)
                        ..|.++|+.+++.+.++..+.++.+++.+.+.+ +|++. ..++.+.+||..++.
T Consensus       267 pgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  267 PGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             -EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             CceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence              158899999999999999888899999999876 55444 458999999999854

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.45  E-value=8e-06  Score=71.73  Aligned_cols=87  Identities=17%  Similarity=0.331  Sum_probs=69.2

Q ss_pred             EEEEccCCCc----ccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEE
Q 035621           67 HLYNLWSSTP----LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLIS  142 (387)
Q Consensus        67 ~vw~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  142 (387)
                      .+|++..++.    +..++.+..+.+++++|+...++.|+.||.|.+||...+..  .+....-.++.++|+|+|..+++
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V  316 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVV  316 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEE
Confidence            4566654432    22445778999999999999999999999999999865532  22234556789999999999999


Q ss_pred             EeCCCcEEEEeCC
Q 035621          143 GGDDGVIATVPIF  155 (387)
Q Consensus       143 ~~~dg~i~iwd~~  155 (387)
                      |+..|.+.+||+.
T Consensus       317 ~s~qGelQ~FD~A  329 (545)
T PF11768_consen  317 GSEQGELQCFDMA  329 (545)
T ss_pred             EcCCceEEEEEee
Confidence            9999999999983

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.43  E-value=0.00039  Score=61.46  Aligned_cols=92  Identities=13%  Similarity=0.214  Sum_probs=71.7

Q ss_pred             EEEeCCCCcE----EEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE
Q 035621          206 KFWRLLNGTH----LSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM  281 (387)
Q Consensus       206 ~iwd~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  281 (387)
                      .+|+....+.    +.+++.+..+.+++++|+...++.|+.||.|.+||...+..          .. ....-.++.++|
T Consensus       239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t----------~~-~ka~~~P~~iaW  307 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT----------LL-AKAEFIPTLIAW  307 (545)
T ss_pred             EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee----------ee-eeecccceEEEE
Confidence            4566654432    34455789999999999999999999999999999876321          11 123456789999


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621          282 MNEGKNLVSAAEDGSVYIWEIEKRQVV  308 (387)
Q Consensus       282 s~~~~~l~s~~~dg~i~iwd~~~~~~~  308 (387)
                      +|+|.++++|+.-|.+.+||+.-.-.-
T Consensus       308 Hp~gai~~V~s~qGelQ~FD~ALspi~  334 (545)
T PF11768_consen  308 HPDGAIFVVGSEQGELQCFDMALSPIK  334 (545)
T ss_pred             cCCCcEEEEEcCCceEEEEEeecCccc
Confidence            999999999999999999998765443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.42  E-value=2.3e-05  Score=73.25  Aligned_cols=145  Identities=12%  Similarity=0.170  Sum_probs=99.3

Q ss_pred             CcEEEee-CCCCcEEEEeCCCCceeEeccCCCCC-ceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCC--cc----c
Q 035621            8 NEVILTS-SPEGPITAYNPSSGAILAHFSGSRSP-RRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSST--PL----H   78 (387)
Q Consensus         8 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~--~~----~   78 (387)
                      .++|+.. .....|+-.|+++|+.+.++..|... |..++-..+ ..+....-+.|-.++.+..||.+-..  .+    +
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3444443 35578999999999999999887754 554443211 11112223336678899999986532  22    1


Q ss_pred             ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621           79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  154 (387)
                      .+.......|++-+.+| +||+|+.+|.|++||--..+....+.+-..+|.+|..+.||+++++.+. ..|.+++.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            22344567888887777 7999999999999995333334456677889999999999999887765 56777776

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.41  E-value=0.00023  Score=61.30  Aligned_cols=217  Identities=16%  Similarity=0.201  Sum_probs=121.5

Q ss_pred             eEEEEEccCCCcccccC--CCCCeeeEEe---ccC----CCEEEEecC----------CCcEEEEeCCCC----ceeEEc
Q 035621           65 SVHLYNLWSSTPLHNIP--VPEPVAPLAT---TAD----GSYLFTGGL----------SGNVYAISVPKG----DILRSF  121 (387)
Q Consensus        65 ~v~vw~~~~~~~~~~~~--~~~~v~~~~~---~~~----~~~l~~~~~----------dg~i~i~d~~~~----~~~~~~  121 (387)
                      .|++.|..+.+.+..+.  ..+.+.+++.   ..+    ..++++|+.          .|.|.++++...    ..+..+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            57777777776665555  3344555443   322    467777752          288999999874    122222


Q ss_pred             --cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe--eeccCCCeEEEEEeeCCCCceEE
Q 035621          122 --SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK--FVAHNDSVTAITCCIGSFNSIII  197 (387)
Q Consensus       122 --~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~  197 (387)
                        ....++|++++-- ++. |+++. .+.|.+|++..            ...+..  .......+.++...    +++++
T Consensus        83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~------------~~~l~~~~~~~~~~~i~sl~~~----~~~I~  143 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDN------------SKTLLKKAFYDSPFYITSLSVF----KNYIL  143 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEET------------TSSEEEEEEE-BSSSEEEEEEE----TTEEE
T ss_pred             EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccC------------cccchhhheecceEEEEEEecc----ccEEE
Confidence              2347889998865 444 44433 47899999832            221222  22233356666554    36889


Q ss_pred             EEeCCCcEEEEeCCC-CcEEEEEe---cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeec-ccc
Q 035621          198 SCSMDCTCKFWRLLN-GTHLSTVT---FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA-NRH  272 (387)
Q Consensus       198 s~~~d~~i~iwd~~~-~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~  272 (387)
                      .|.....+.++..+. ...+..+.   .+..++++.+-++++.++++..+|.+.++...............+.... -..
T Consensus       144 vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l  223 (321)
T PF03178_consen  144 VGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL  223 (321)
T ss_dssp             EEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-
T ss_pred             EEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC
Confidence            998888888875543 33233333   4567888988877779999999999999988753222211110121111 123


Q ss_pred             cccEEEE---EEecC--CC------EEEEEeCCCcEEEE
Q 035621          273 DGVVVSV---MMMNE--GK------NLVSAAEDGSVYIW  300 (387)
Q Consensus       273 ~~~v~~~---~~s~~--~~------~l~s~~~dg~i~iw  300 (387)
                      ...|+++   ++.|.  +.      .++.++.+|.|...
T Consensus       224 g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  224 GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            4567777   44441  22      47778889888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.39  E-value=0.00014  Score=69.35  Aligned_cols=232  Identities=14%  Similarity=0.159  Sum_probs=135.0

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc----cCCCcc-
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL----WSSTPL-   77 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~----~~~~~~-   77 (387)
                      .|..+++-++.+...|.|.+-|.++..... ...-...|.+++|+|+..+.+-    .+..+++.+-.-    -..+++ 
T Consensus        75 ~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~l----iT~~~tll~mT~~f~~i~E~~L~  149 (1265)
T KOG1920|consen   75 QFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLAL----ITGRQTLLFMTKDFEPIAEKPLD  149 (1265)
T ss_pred             EEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEE----EeCCcEEEEEeccccchhccccc
Confidence            455677778888889999999987765422 2224556999999998766543    344445443321    000111 


Q ss_pred             ------------------cccC----------------------CCCCeeeEEeccCCCEEEEe-----cCCCcEEEEeC
Q 035621           78 ------------------HNIP----------------------VPEPVAPLATTADGSYLFTG-----GLSGNVYAISV  112 (387)
Q Consensus        78 ------------------~~~~----------------------~~~~v~~~~~~~~~~~l~~~-----~~dg~i~i~d~  112 (387)
                                        ..+.                      ..+.=..+.|--||+++++.     .....|++||-
T Consensus       150 ~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~dr  229 (1265)
T KOG1920|consen  150 ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDR  229 (1265)
T ss_pred             cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecc
Confidence                              0111                      00112348899999999883     23378999997


Q ss_pred             CCCceeEEccCCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee
Q 035621          113 PKGDILRSFSAHDKPVSCLKISPDGSLLISGG---DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI  189 (387)
Q Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  189 (387)
                      + |.+-..-....+--.+++|-|.|..+++-.   .|+.|.+|.-..+         ..+.....+.....++..++|+.
T Consensus       230 E-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL---------~hg~f~l~~p~de~~ve~L~Wns  299 (1265)
T KOG1920|consen  230 E-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL---------RHGEFVLPFPLDEKEVEELAWNS  299 (1265)
T ss_pred             c-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc---------cccccccCCcccccchheeeecC
Confidence            5 544333233334456899999999888764   4556888864221         12222223344445588999987


Q ss_pred             CCCCceEEE---EeCCCcEEEEeCCCCc--EEEEEecCCceeEEEeCCCC-CeEEEEccCCcEEEEecc
Q 035621          190 GSFNSIIIS---CSMDCTCKFWRLLNGT--HLSTVTFPCAIMGLALDPTE-TDFFAAGSDGLIYKGLLK  252 (387)
Q Consensus       190 ~~~~~~l~s---~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~  252 (387)
                      ++  .+|+.   ......|++|-+.+-.  ....+..+.... +.|+|.. ..+.+-..+|...++++.
T Consensus       300 ~s--diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  300 NS--DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWDPVTEKTLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             CC--CceeeeecccccceEEEEEecCeEEEEEEEEecccccc-ccccCCCceeEEEEecCCcEEEEEEE
Confidence            75  77776   4445559999887643  222233332222 6677643 233333355555555443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.38  E-value=7.7e-05  Score=60.49  Aligned_cols=203  Identities=14%  Similarity=0.189  Sum_probs=119.0

Q ss_pred             eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC--CCeeeEEeccCCCEEEEecCCCcEEEE
Q 035621           33 HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP--EPVAPLATTADGSYLFTGGLSGNVYAI  110 (387)
Q Consensus        33 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~  110 (387)
                      .+.+-...+.+++|+|+...   .+++....+.|..++. +|+.++.+...  +..-.+++..++.++++--.++.+.++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~t---LfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGT---LFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIF   91 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTE---EEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred             ECCCccCCccccEEcCCCCe---EEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence            45566667999999985321   2223677888888886 57777777644  568889998888877777678999999


Q ss_pred             eCCCCc------eeEEcc-----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe-----
Q 035621          111 SVPKGD------ILRSFS-----AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK-----  174 (387)
Q Consensus       111 d~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----  174 (387)
                      ++....      ....+.     .++..+-.++|+|.++.|+.+-+..-..+|.+.....       ........     
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~-------~~~~~~~~~~~~~  164 (248)
T PF06977_consen   92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG-------GFDLFVSDDQDLD  164 (248)
T ss_dssp             EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--------SS--EEEE-HHHH
T ss_pred             EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC-------ccceeeccccccc
Confidence            883321      111121     3456789999999888888887777777776632110       00101111     


Q ss_pred             -eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCC----------ceeEEEeCCCCCeEEEEccC
Q 035621          175 -FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC----------AIMGLALDPTETDFFAAGSD  243 (387)
Q Consensus       175 -~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~d  243 (387)
                       .......+.+++++|.. +.+++....+..|..+| .+|+.+..+....          +.-.++|.++|++.+++ .-
T Consensus       165 ~~~~~~~d~S~l~~~p~t-~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-Ep  241 (248)
T PF06977_consen  165 DDKLFVRDLSGLSYDPRT-GHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EP  241 (248)
T ss_dssp             -HT--SS---EEEEETTT-TEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TT
T ss_pred             cccceeccccceEEcCCC-CeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CC
Confidence             11233457889998875 67888888899999999 7788877776332          57889999998655554 44


Q ss_pred             CcEEEE
Q 035621          244 GLIYKG  249 (387)
Q Consensus       244 g~i~i~  249 (387)
                      +..++|
T Consensus       242 Nlfy~f  247 (248)
T PF06977_consen  242 NLFYRF  247 (248)
T ss_dssp             TEEEEE
T ss_pred             ceEEEe
Confidence            455443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.37  E-value=0.00075  Score=56.79  Aligned_cols=234  Identities=15%  Similarity=0.170  Sum_probs=126.0

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc----
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH----   78 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~----   78 (387)
                      +-...++.|+.|+.+| +++++........... +..+|..+...++...+.     .-.|+.+.++++..-....    
T Consensus         2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~ll-----vLsd~~l~~~~L~~l~~~~~~~~   74 (275)
T PF00780_consen    2 CADSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLL-----VLSDGQLYVYDLDSLEPVSTSAP   74 (275)
T ss_pred             CcccCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEE-----EEcCCccEEEEchhhcccccccc
Confidence            3445678899999888 9999983332222222 233388898888433322     1246999999987654443    


Q ss_pred             -----------ccCCCCCeeeEE--eccCC-CEEEEecCCCcEEEEeCCCC-----ceeEEccCCCCCeEEEEEcCCCCE
Q 035621           79 -----------NIPVPEPVAPLA--TTADG-SYLFTGGLSGNVYAISVPKG-----DILRSFSAHDKPVSCLKISPDGSL  139 (387)
Q Consensus        79 -----------~~~~~~~v~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~  139 (387)
                                 .+.....+..++  -...+ ..|+++ ....|.+|.....     +..+.+. -...+.+++|.  ++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~  150 (275)
T PF00780_consen   75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNK  150 (275)
T ss_pred             ccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCE
Confidence                       122223444444  11233 344444 4558888887553     3444544 34778999998  556


Q ss_pred             EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE--
Q 035621          140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS--  217 (387)
Q Consensus       140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--  217 (387)
                      ++.|..++ ..+.|+.+........................++..+...   ++.+|++-  |..-.+.| ..|+..+  
T Consensus       151 i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~Ll~~--~~~g~fv~-~~G~~~r~~  223 (275)
T PF00780_consen  151 ICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS---DNEFLLCY--DNIGVFVN-KNGEPSRKS  223 (275)
T ss_pred             EEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC---CceEEEEe--cceEEEEc-CCCCcCccc
Confidence            77777654 6778884211110000000000000011112233333322   23555542  33333444 3454443  


Q ss_pred             EEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621          218 TVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ  257 (387)
Q Consensus       218 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  257 (387)
                      .+.....+.++++.  ..++++.+.+ .|.+|++.++...
T Consensus       224 ~i~W~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lv  260 (275)
T PF00780_consen  224 TIQWSSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELV  260 (275)
T ss_pred             EEEcCCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEE
Confidence            55566777777774  3577776665 4999999985433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.35  E-value=1.8e-07  Score=82.09  Aligned_cols=205  Identities=15%  Similarity=0.165  Sum_probs=124.2

Q ss_pred             CeeeEEeccC--CCEEEEecCCCcEEEEeCCCCcee--EEccCCCCCeEEEEEcC-CCCEEEEEe----CCCcEEEEeCC
Q 035621           85 PVAPLATTAD--GSYLFTGGLSGNVYAISVPKGDIL--RSFSAHDKPVSCLKISP-DGSLLISGG----DDGVIATVPIF  155 (387)
Q Consensus        85 ~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~iwd~~  155 (387)
                      .+.|+++.-+  ...+++|..+|.|.+-..+...-.  ....++..+.++++|++ |.+.|+.|-    .|..+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            4566665543  347888999999999887654322  33456788899999998 566777663    35679999995


Q ss_pred             cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCC-CC
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDP-TE  234 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~  234 (387)
                      .....      +.......- +......+++|..+  .+++.+|.....++++|++........-....+..+...| .+
T Consensus       138 s~ltv------Pke~~~fs~-~~l~gqns~cwlrd--~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  138 SLLTV------PKESPLFSS-STLDGQNSVCWLRD--TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSP  208 (783)
T ss_pred             cccCC------Ccccccccc-ccccCccccccccC--cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCC
Confidence            54221      111111111 12334456766643  5889999999999999998432211111233566777888 55


Q ss_pred             CeEEEEccCCcEEEEec-cccccccccccceeEeecccccccEEEEEEecCCC-EEEEEe-CCCcEEEEECC
Q 035621          235 TDFFAAGSDGLIYKGLL-KYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAA-EDGSVYIWEIE  303 (387)
Q Consensus       235 ~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iwd~~  303 (387)
                      +++++.. ||.|.+||. +.-+...    ..+..-.+.-...+..++|+|... .+++.. ..++|+++|+.
T Consensus       209 nY~cs~~-dg~iAiwD~~rnienpl----~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  209 NYFCSNS-DGDIAIWDTYRNIENPL----QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             Cceeccc-cCceeeccchhhhccHH----HHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            6666555 999999993 3211100    001111111223588999998643 444444 45789999875

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.29  E-value=0.00029  Score=60.68  Aligned_cols=214  Identities=17%  Similarity=0.234  Sum_probs=122.3

Q ss_pred             CcEEEEeCCCCceeEeccCCCC-CceeEE---EcC-----ccce-eeeccccCC----CCCeEEEEEccCC-------Cc
Q 035621           18 GPITAYNPSSGAILAHFSGSRS-PRRGLT---FAG-----KPFI-AASHISPTT----GSGSVHLYNLWSS-------TP   76 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~-~v~~~~---~~~-----~~~~-~~~~~~~~~----~d~~v~vw~~~~~-------~~   76 (387)
                      ..|++.|..+.+.+.++.-... .+.+++   +..     ...+ .++.+..+.    ..|.+.++++...       +.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3588889888877766543222 244443   332     1111 122221121    2299999999884       22


Q ss_pred             ccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-eeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621           77 LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD-ILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  154 (387)
                      +.....+++|++++-- ++ +|+++. ++.|.+|++...+ ....-. .....+.++...  +++++.|.....+.++..
T Consensus        82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence            2333467889988877 34 455443 4789999998777 433222 122356666554  569999999899988855


Q ss_pred             CcccccCCCCCCCCccceEeee--ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-------Cc----EEEEEec
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFV--AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN-------GT----HLSTVTF  221 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~----~~~~~~~  221 (387)
                      ..           ....+..+.  .....++++.+.++.  +.++.+..+|.+.++....       +.    ....+..
T Consensus       157 ~~-----------~~~~l~~va~d~~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l  223 (321)
T PF03178_consen  157 DE-----------ENNKLILVARDYQPRWVTAAEFLVDE--DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL  223 (321)
T ss_dssp             ET-----------TTE-EEEEEEESS-BEEEEEEEE-SS--SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-
T ss_pred             Ec-----------cCCEEEEEEecCCCccEEEEEEecCC--cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC
Confidence            21           111122222  234457777777665  4899999999999998762       22    3344556


Q ss_pred             CCceeEE---EeCCC--CC------eEEEEccCCcEEEE
Q 035621          222 PCAIMGL---ALDPT--ET------DFFAAGSDGLIYKG  249 (387)
Q Consensus       222 ~~~v~~~---~~~~~--~~------~l~~~~~dg~i~i~  249 (387)
                      +..|+++   ++.|.  +.      .++.++.+|.|...
T Consensus       224 g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  224 GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            7888888   66662  22      38888889998844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.28  E-value=0.0014  Score=55.21  Aligned_cols=222  Identities=14%  Similarity=0.144  Sum_probs=127.7

Q ss_pred             ccCCCc-EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621            4 HLPCNE-VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-   81 (387)
Q Consensus         4 ~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-   81 (387)
                      |.|+.. ++.+--..+.|.-|+..+++.. .+...............+.+.+       .+.-+.+++.+++..+..+. 
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d~~g~Lv~-------~~~g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGFSSGALIDAGGRLIA-------CEHGVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCcccceeecCCCeEEE-------EccccEEEeccCCceeEEecc
Confidence            555555 4555556678888888766432 2221222122233344444433       23446666765554422221 


Q ss_pred             -----CCCCeeeEEeccCCCEEEEecC-----------CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC
Q 035621           82 -----VPEPVAPLATTADGSYLFTGGL-----------SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD  145 (387)
Q Consensus        82 -----~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  145 (387)
                           .....+.....|+|.+-+....           -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+..
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence                 1245678888999876665433           133555554 56666666665666789999999987777765


Q ss_pred             C-CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC-cEEEEeCCCCcEEEEEecC-
Q 035621          146 D-GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC-TCKFWRLLNGTHLSTVTFP-  222 (387)
Q Consensus       146 d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~-  222 (387)
                      . +.|.-|++.. ...   .. ........+....+..-.++...+  +.+.+++..+| .|..|+.. ++.+..+..+ 
T Consensus       183 ~~~~i~r~~~d~-~~g---~~-~~~~~~~~~~~~~G~PDG~~vDad--G~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~  254 (307)
T COG3386         183 PANRIHRYDLDP-ATG---PI-GGRRGFVDFDEEPGLPDGMAVDAD--GNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV  254 (307)
T ss_pred             CCCeEEEEecCc-ccC---cc-CCcceEEEccCCCCCCCceEEeCC--CCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence            4 7787777732 000   00 011112222223444455555444  46665555554 89999988 9999999977 


Q ss_pred             CceeEEEeC-CCCCeEEEEcc
Q 035621          223 CAIMGLALD-PTETDFFAAGS  242 (387)
Q Consensus       223 ~~v~~~~~~-~~~~~l~~~~~  242 (387)
                      ..+++++|- |+.+.|++.+.
T Consensus       255 ~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         255 KRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CCCccceEeCCCcCEEEEEec
Confidence            778888886 44555555443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=0.0012  Score=58.20  Aligned_cols=200  Identities=17%  Similarity=0.163  Sum_probs=134.8

Q ss_pred             ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecC---CCcEEEEeCCCCce
Q 035621           41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGL---SGNVYAISVPKGDI  117 (387)
Q Consensus        41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~  117 (387)
                      ...+++++....   ..+....++.|.+.|..+.+.............++++++++.+.++..   ++.+.+.|..+.+.
T Consensus        76 p~~i~v~~~~~~---vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          76 PAGVAVNPAGNK---VYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             ccceeeCCCCCe---EEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence            345666653221   122245578999999888877777776668889999999988887765   68999999998888


Q ss_pred             eEEccCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE
Q 035621          118 LRSFSAHDKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII  196 (387)
Q Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  196 (387)
                      +.....-..+ ..++++|+++.++... .++.|.+.|.......      . .......... ..-..+.+.+++  .++
T Consensus       153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~------~-~~~~~~~~~~-~~P~~i~v~~~g--~~~  221 (381)
T COG3391         153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV------R-GSVGSLVGVG-TGPAGIAVDPDG--NRV  221 (381)
T ss_pred             EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee------c-cccccccccC-CCCceEEECCCC--CEE
Confidence            8875543344 8999999999666665 7888999986221000      0 0000011112 223457777775  433


Q ss_pred             E-EEeCC--CcEEEEeCCCCcEEEE-EecCC-ceeEEEeCCCCCeEEEEcc-CCcEEEEecccc
Q 035621          197 I-SCSMD--CTCKFWRLLNGTHLST-VTFPC-AIMGLALDPTETDFFAAGS-DGLIYKGLLKYQ  254 (387)
Q Consensus       197 ~-s~~~d--~~i~iwd~~~~~~~~~-~~~~~-~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~  254 (387)
                      . +...+  +.+...|..++..... ..... ....+..+|+|+.+.+... .+.+.+.|....
T Consensus       222 yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         222 YVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             EEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            3 33333  6899999988877665 33223 5778999999999998855 588998888763

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.27  E-value=0.00087  Score=56.40  Aligned_cols=154  Identities=16%  Similarity=0.176  Sum_probs=90.4

Q ss_pred             cCCCEEEEecCCCcEEEEeCCC-CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCC--CCCc
Q 035621           93 ADGSYLFTGGLSGNVYAISVPK-GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDK--NPDD  169 (387)
Q Consensus        93 ~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~  169 (387)
                      ..++.|+.|+.+| +.+++... .......  +...|..+...|+-+.+++-+ |+.+.++++...........  ....
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3578899998888 99999833 3333322  233499999999877666664 49999999965543321100  0000


Q ss_pred             cceEeeeccCCCeEEEE-EeeCCCCceEEEEeCCCcEEEEeCCCC-----cEEEEEecCCceeEEEeCCCCCeEEEEccC
Q 035621          170 LMLQKFVAHNDSVTAIT-CCIGSFNSIIISCSMDCTCKFWRLLNG-----THLSTVTFPCAIMGLALDPTETDFFAAGSD  243 (387)
Q Consensus       170 ~~~~~~~~~~~~i~~~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  243 (387)
                      ............+...+ ..... +...+......+|.+|.....     +..+.+..+..+..++|.  ++.+++|..+
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~-~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHE-GSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             ccccccccccCCeeEEeeccccc-cceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC
Confidence            00000111222333333 11222 233333444568888887653     567778889999999998  5667777644


Q ss_pred             CcEEEEecccc
Q 035621          244 GLIYKGLLKYQ  254 (387)
Q Consensus       244 g~i~i~d~~~~  254 (387)
                      + ..+.|+.++
T Consensus       158 ~-f~~idl~~~  167 (275)
T PF00780_consen  158 G-FYLIDLNTG  167 (275)
T ss_pred             c-eEEEecCCC
Confidence            3 666676643

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.26  E-value=0.00088  Score=59.55  Aligned_cols=142  Identities=11%  Similarity=0.009  Sum_probs=82.1

Q ss_pred             CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621           84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      ..+..+.++|+|++++++ .+|.-.+|.....+...     .+.-...+|.+.+ .+++-...+.|.++.-.+       
T Consensus        33 ~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~-------   98 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFK-------   98 (443)
T ss_dssp             S--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTE-------
T ss_pred             cCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCc-------
Confidence            457889999999999885 57888888743333322     2334567898854 466677788899963311       


Q ss_pred             CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC
Q 035621          164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD  243 (387)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  243 (387)
                           ......+... ..+..|-  .   |.+|...+.+ .|.+||+.+++.++++..+. |..+.|++++.+++..+.+
T Consensus        99 -----~~~~k~i~~~-~~~~~If--~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~  165 (443)
T PF04053_consen   99 -----NEVVKSIKLP-FSVEKIF--G---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD  165 (443)
T ss_dssp             -----E-TT-----S-S-EEEEE------SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-
T ss_pred             -----cccceEEcCC-cccceEE--c---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC
Confidence                 1111122111 1233332  2   3677766554 89999999999999998664 8999999999999998755


Q ss_pred             CcEEEEeccc
Q 035621          244 GLIYKGLLKY  253 (387)
Q Consensus       244 g~i~i~d~~~  253 (387)
                       .+++++.+.
T Consensus       166 -~i~il~~~~  174 (443)
T PF04053_consen  166 -SIYILKYNL  174 (443)
T ss_dssp             -SEEEEEE-H
T ss_pred             -eEEEEEecc
Confidence             777777655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.23  E-value=0.0029  Score=58.14  Aligned_cols=148  Identities=10%  Similarity=0.126  Sum_probs=87.8

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCC--CC--Ccee-EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGS--RS--PRRG-LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP   83 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~--~v~~-~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~   83 (387)
                      ..++.++.|+.+.-.|.++|+.+......  ..  .+.+ -....+..+....-.-.+.+|.|..+|.++|+.+..+...
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~  200 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV  200 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence            46777888999999999999998766421  10  1111 1111122222110000123789999999999877654411


Q ss_pred             --C------------------------------Ce-eeEEeccCCCEEEEecCC-----C-----------cEEEEeCCC
Q 035621           84 --E------------------------------PV-APLATTADGSYLFTGGLS-----G-----------NVYAISVPK  114 (387)
Q Consensus        84 --~------------------------------~v-~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~  114 (387)
                        .                              .+ ..+++.+...+++.+..+     +           .|.-.|+++
T Consensus       201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T  280 (527)
T TIGR03075       201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT  280 (527)
T ss_pred             CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence              0                              01 124666666677766522     2           577889999


Q ss_pred             CceeEEccCCCCCe---------EEEEEcCCCC---EEEEEeCCCcEEEEeCCc
Q 035621          115 GDILRSFSAHDKPV---------SCLKISPDGS---LLISGGDDGVIATVPIFQ  156 (387)
Q Consensus       115 ~~~~~~~~~~~~~v---------~~~~~~~~~~---~l~~~~~dg~i~iwd~~~  156 (387)
                      |+....++.....+         .-+....+|+   .++.+..+|.+.+.|-..
T Consensus       281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~t  334 (527)
T TIGR03075       281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTN  334 (527)
T ss_pred             CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCC
Confidence            99887766422211         2222334665   778899999999999854

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=0.0033  Score=55.41  Aligned_cols=267  Identities=17%  Similarity=0.177  Sum_probs=166.5

Q ss_pred             EEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-CCeeeEEeccCCCEE
Q 035621           20 ITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-EPVAPLATTADGSYL   98 (387)
Q Consensus        20 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l   98 (387)
                      +.+++..+......+..+. ....+...+...-.  +++....+ .+...+............. .....+++++.+..+
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~--~v~~~~~~-~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~v   88 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQV--YVANSGSN-DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKV   88 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEE--EEEeecCc-eeeecccccceeeeeccCCCccccceeeCCCCCeE
Confidence            7777776666655554333 34455665533111  01112222 4444444322111112222 345677888888755


Q ss_pred             EE-ecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621           99 FT-GGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD---DGVIATVPIFQLVDEHTDDKNPDDLMLQK  174 (387)
Q Consensus        99 ~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  174 (387)
                      +. ...++.|.+.|..+.+.......-. ....++++|+++.+.++..   ++.+.+.|-            ........
T Consensus        89 yv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~------------~t~~~~~~  155 (381)
T COG3391          89 YVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDA------------ATNKVTAT  155 (381)
T ss_pred             EEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeC------------CCCeEEEE
Confidence            44 4456889999988777776664322 6678999999987777765   577777776            44445555


Q ss_pred             eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE-----EEecCCceeEEEeCCCCCeEEEEccC---CcE
Q 035621          175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS-----TVTFPCAIMGLALDPTETDFFAAGSD---GLI  246 (387)
Q Consensus       175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i  246 (387)
                      ...-..+ ..+++.|++ ...+++-..++.|.+.|.......+     .+........+.++|+|..+.+....   +.+
T Consensus       156 ~~vG~~P-~~~a~~p~g-~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v  233 (381)
T COG3391         156 IPVGNTP-TGVAVDPDG-NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV  233 (381)
T ss_pred             EecCCCc-ceEEECCCC-CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence            4443345 778888886 2344455578999999977666553     23344566789999999977776553   588


Q ss_pred             EEEeccccccccccccceeEe-ecccccccEEEEEEecCCCEEEEEe-CCCcEEEEECCCccEEEEeecc
Q 035621          247 YKGLLKYQSRQQMHKGQELVT-LANRHDGVVVSVMMMNEGKNLVSAA-EDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       247 ~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      ...|......        ... ...+-. ....+.++|+|+++.+.. ..+.+.+-|..+.+....+...
T Consensus       234 ~~id~~~~~v--------~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~  294 (381)
T COG3391         234 LKIDTATGNV--------TATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG  294 (381)
T ss_pred             EEEeCCCceE--------EEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence            8888776322        111 111112 456788999999888774 4588999999998888876543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.18  E-value=0.00028  Score=61.73  Aligned_cols=264  Identities=12%  Similarity=0.142  Sum_probs=127.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC---C---
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS---T---   75 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~---~---   75 (387)
                      ++|+++..-|++|...|.|.||.....+...  .....+-....+.+    .      ...++.-.+-|+...   .   
T Consensus         7 vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~----~------~~~~~~~~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    7 VSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRR----F------SLNNSPGKLTDISDRAPPSLKE   74 (395)
T ss_dssp             EEEETTTTEEEEEETTS-EEEEEEEE--------------------S------------GGGSS-SEEE-GGG--TT-SE
T ss_pred             EEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccc----c------cccCCCcceEEehhhCCccccc
Confidence            4678888889999999999999875433221  00011111111111    0      001111222233211   1   


Q ss_pred             ---cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE--ccC------CCCCeEEEEEcC-----CC-
Q 035621           76 ---PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS--FSA------HDKPVSCLKISP-----DG-  137 (387)
Q Consensus        76 ---~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~-  137 (387)
                         +...+. ..++|++++.+.- .++++|..+|.+.|.|++....+..  +..      ....++++.|..     |+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence               111111 2578999999754 4899999999999999988877654  222      234688888862     33 


Q ss_pred             --CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCC--------------------Cce
Q 035621          138 --SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF--------------------NSI  195 (387)
Q Consensus       138 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------------~~~  195 (387)
                        -.+++|...|.+.+|.+.-.....     ..-........+.++|..+..-....                    ..+
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~-----f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~  228 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGR-----FSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY  228 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG------EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCc-----eEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence              378999999999999883100000     00011111124556666665332110                    114


Q ss_pred             EEEEeCCCcEEEEeCCCCcEEEEEec-CCceeEEEeC-----CCCCeEEEEccCCcEEEEeccccccccccccceeEeec
Q 035621          196 IISCSMDCTCKFWRLLNGTHLSTVTF-PCAIMGLALD-----PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA  269 (387)
Q Consensus       196 l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  269 (387)
                      ++.+ .+..++++...+.+....... +.....+++-     ..+..|++-..+|.|+++.+..-        .++....
T Consensus       229 vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L--------kei~~~~  299 (395)
T PF08596_consen  229 VVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL--------KEIKSVS  299 (395)
T ss_dssp             EEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT----------EEEEEE
T ss_pred             EEEE-cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc--------hHhhccc
Confidence            4444 467799999988876655442 1233344442     35667788889999999998762        2222211


Q ss_pred             ---ccccccEEEEEEecCCCEEEEEe
Q 035621          270 ---NRHDGVVVSVMMMNEGKNLVSAA  292 (387)
Q Consensus       270 ---~~~~~~v~~~~~s~~~~~l~s~~  292 (387)
                         ..+...+....++++|..++-.+
T Consensus       300 l~~~~d~~~~~~ssis~~Gdi~~~~g  325 (395)
T PF08596_consen  300 LPPPLDSRRLSSSSISRNGDIFYWTG  325 (395)
T ss_dssp             -SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred             CCCccccccccccEECCCCCEEEEeC
Confidence               11223344566677777665544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.18  E-value=0.0015  Score=58.00  Aligned_cols=197  Identities=11%  Similarity=0.121  Sum_probs=108.3

Q ss_pred             cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEE
Q 035621          106 NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAI  185 (387)
Q Consensus       106 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  185 (387)
                      .|.+|+. .|+++.++.-..+.+.++.|+.+. .|++...||.+++||+.... ..     ..+..+.........+...
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~f-----sl~~~i~~~~v~e~~i~~~  133 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QF-----SLGEEIEEEKVLECRIFAI  133 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-ee-----chhhhccccCccccccccc
Confidence            4899985 677777765444899999999754 56677799999999984221 00     0011111111111112222


Q ss_pred             EEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEEe-cCC---------ceeE-EEeCCCCCeEEEEccCCcEEEEeccc
Q 035621          186 TCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTVT-FPC---------AIMG-LALDPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       186 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~---------~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                      .+..+  |-.+++  .++.+.+.+-.... ..+.+. .+.         .... ..++.+....+....++.+++.+-..
T Consensus       134 ~~~~~--GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~  209 (410)
T PF04841_consen  134 WFYKN--GIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS  209 (410)
T ss_pred             ccCCC--CEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence            21111  222222  33444333221111 111111 111         0111 23444444444444455555443322


Q ss_pred             cccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          254 QSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      .        ..    . ...+++..++.||+++++|.-..+|.+.+...+-.+.+..+.......+..|.+...
T Consensus       210 ~--------~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  210 F--------KQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             c--------cc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence            0        00    1 234689999999999999999999999999988888888887765667778877643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.15  E-value=0.004  Score=54.67  Aligned_cols=208  Identities=16%  Similarity=0.157  Sum_probs=115.1

Q ss_pred             CeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-------------------------------------------eeEEc
Q 035621           85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGD-------------------------------------------ILRSF  121 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------------------------------------------~~~~~  121 (387)
                      .|+.+.|.++...|++|...|.|.+|.....+                                           +...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47888999998899999999999888652111                                           11112


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee--------eccCCCeEEEEEee---C
Q 035621          122 SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF--------VAHNDSVTAITCCI---G  190 (387)
Q Consensus       122 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~---~  190 (387)
                      ....++|++++.+. =-+++.|..+|.+.+.|+|..            ..+..-        ......++++.|..   .
T Consensus        83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGP------------avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~  149 (395)
T PF08596_consen   83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGP------------AVIYNENIRESFLSKSSSSYVTSIEFSVMTLG  149 (395)
T ss_dssp             ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTT------------EEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred             eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCC------------eEEeeccccccccccccccCeeEEEEEEEecC
Confidence            23468899999974 448999999999999999542            222221        11234577777752   2


Q ss_pred             CCC---ceEEEEeCCCcEEEEeCCC---CcEE----EEE-ecCCceeEEE-eCCC--------------------CCeEE
Q 035621          191 SFN---SIIISCSMDCTCKFWRLLN---GTHL----STV-TFPCAIMGLA-LDPT--------------------ETDFF  238 (387)
Q Consensus       191 ~~~---~~l~s~~~d~~i~iwd~~~---~~~~----~~~-~~~~~v~~~~-~~~~--------------------~~~l~  238 (387)
                      .++   -.+++|...|.+.+|.+.-   +.-.    ... .+...+..+. ++.+                    -+.++
T Consensus       150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v  229 (395)
T PF08596_consen  150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV  229 (395)
T ss_dssp             TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred             CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence            222   4688889999999998751   1111    111 2344444443 3211                    12345


Q ss_pred             EEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE-----ecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621          239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM-----MNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       239 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      +...+..++++.......        ..... ...-....+.+     ...+..|++-..+|.|+++.+..-+.+..++-
T Consensus       230 VvvSe~~irv~~~~~~k~--------~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  230 VVVSESDIRVFKPPKSKG--------AHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             EEE-SSEEEEE-TT---E--------EEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred             EEEcccceEEEeCCCCcc--------cceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence            555577788887765322        22211 11122233344     23566788889999999999999998888775


Q ss_pred             c
Q 035621          314 E  314 (387)
Q Consensus       314 ~  314 (387)
                      .
T Consensus       301 ~  301 (395)
T PF08596_consen  301 P  301 (395)
T ss_dssp             S
T ss_pred             C
Confidence            3

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.08  E-value=0.0011  Score=45.69  Aligned_cols=102  Identities=17%  Similarity=0.120  Sum_probs=72.2

Q ss_pred             eEEEEEeeC-CC-CceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc
Q 035621          182 VTAITCCIG-SF-NSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM  259 (387)
Q Consensus       182 i~~~~~~~~-~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  259 (387)
                      |++++++.- ++ .+.|+.|+.|..|++|+  ..+.+..+.....|++++-... ..++.+-.+|+|-+|+-..      
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~------   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ------   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc------
Confidence            566776652 22 26899999999999997  4577888888899999988877 6688899999999997643      


Q ss_pred             cccceeEeecccccccEEEEEEec-CC---CEEEEEeCCCcEE
Q 035621          260 HKGQELVTLANRHDGVVVSVMMMN-EG---KNLVSAAEDGSVY  298 (387)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~s~-~~---~~l~s~~~dg~i~  298 (387)
                          .+-..  .....++++++.. ++   .-|++|-.+|.|-
T Consensus        73 ----RlWRi--KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 ----RLWRI--KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ----eeeee--ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                12222  1233366666543 22   2688888888764

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.04  E-value=0.0086  Score=53.76  Aligned_cols=237  Identities=14%  Similarity=0.194  Sum_probs=124.6

Q ss_pred             ccccCCCcEEEee-C----CCCcEEEEeCCCCceeEec-cCCCCCceeEEEcCcc-ceeeeccccCCC------CCeEEE
Q 035621            2 LHHLPCNEVILTS-S----PEGPITAYNPSSGAILAHF-SGSRSPRRGLTFAGKP-FIAASHISPTTG------SGSVHL   68 (387)
Q Consensus         2 l~~s~~~~~l~~~-~----~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~~~~~~~~~~------d~~v~v   68 (387)
                      +++||||+++|.+ +    ....++++|+.+|+.+... ...  ....+.|.++. .+....+-....      ...|..
T Consensus       129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            4689999988864 2    2245999999999776532 211  12238999863 222222221222      556888


Q ss_pred             EEccCCCcc--cccCCC--CC-eeeEEeccCCCEEEEecC---C-CcEEEEeCCCC----ceeEEccCCCCCeE-EEEEc
Q 035621           69 YNLWSSTPL--HNIPVP--EP-VAPLATTADGSYLFTGGL---S-GNVYAISVPKG----DILRSFSAHDKPVS-CLKIS  134 (387)
Q Consensus        69 w~~~~~~~~--~~~~~~--~~-v~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~----~~~~~~~~~~~~v~-~~~~~  134 (387)
                      |.+.+....  ..+..+  .. ...+..++++++|+....   + ..+.+.++..+    .....+......+. .+...
T Consensus       207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~  286 (414)
T PF02897_consen  207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH  286 (414)
T ss_dssp             EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE
T ss_pred             EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc
Confidence            888666432  333322  22 567888999999876532   2 45888888764    22333333333333 34333


Q ss_pred             CCCCEEEEEe---CCCcEEEEeCCcccccCCCCCCCCc-cceEeeeccCC--CeEEEEEeeCCCCceEEEEeCCC--cEE
Q 035621          135 PDGSLLISGG---DDGVIATVPIFQLVDEHTDDKNPDD-LMLQKFVAHND--SVTAITCCIGSFNSIIISCSMDC--TCK  206 (387)
Q Consensus       135 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~d~--~i~  206 (387)
                       .+.+++...   .++.|...++...          .. .....+..+..  .+..+...  . +.+++.-..++  .|+
T Consensus       287 -~~~~yi~Tn~~a~~~~l~~~~l~~~----------~~~~~~~~l~~~~~~~~l~~~~~~--~-~~Lvl~~~~~~~~~l~  352 (414)
T PF02897_consen  287 -GDRLYILTNDDAPNGRLVAVDLADP----------SPAEWWTVLIPEDEDVSLEDVSLF--K-DYLVLSYRENGSSRLR  352 (414)
T ss_dssp             -TTEEEEEE-TT-TT-EEEEEETTST----------SGGGEEEEEE--SSSEEEEEEEEE--T-TEEEEEEEETTEEEEE
T ss_pred             -CCEEEEeeCCCCCCcEEEEeccccc----------ccccceeEEcCCCCceeEEEEEEE--C-CEEEEEEEECCccEEE
Confidence             444444333   2355666666321          11 11224555555  34444443  2 24555555554  588


Q ss_pred             EEeCCCCcEEEEEecC--CceeEEEeCCCCCeEEEEcc----CCcEEEEecccc
Q 035621          207 FWRLLNGTHLSTVTFP--CAIMGLALDPTETDFFAAGS----DGLIYKGLLKYQ  254 (387)
Q Consensus       207 iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~  254 (387)
                      ++++..+.....+..+  +.+..+...++++.+...-.    -+.++.||+.++
T Consensus       353 v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~  406 (414)
T PF02897_consen  353 VYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG  406 (414)
T ss_dssp             EEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred             EEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            9998855555555533  44566666666655444322    456777777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.02  E-value=0.005  Score=50.13  Aligned_cols=200  Identities=14%  Similarity=0.168  Sum_probs=108.2

Q ss_pred             CCeeeEEeccCCC-EEEEecCCCcEEEEeCCCCceeEEccCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           84 EPVAPLATTADGS-YLFTGGLSGNVYAISVPKGDILRSFSAH-DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        84 ~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                      ..+..++|.|+.+ ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.++++...... 
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~-   99 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS-   99 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc-
Confidence            4599999999765 5556667788888886 57888776532 356889999888877777767899999888321110 


Q ss_pred             CCCCCCCccceEee-----eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC---CcEEEEEe---------cCCc
Q 035621          162 TDDKNPDDLMLQKF-----VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN---GTHLSTVT---------FPCA  224 (387)
Q Consensus       162 ~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~---------~~~~  224 (387)
                           ........+     ..++..+-.++|.+..  +.|+.+-...-..+|.+..   ...+....         .-..
T Consensus       100 -----~~~~~~~~~~l~~~~~~N~G~EGla~D~~~--~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen  100 -----LDRADVQKISLGFPNKGNKGFEGLAYDPKT--NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             -------EEEEEEEE---S---SS--EEEEEETTT--TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             -----cchhhceEEecccccCCCcceEEEEEcCCC--CEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence                 000111111     1355678999999875  4455555555566666653   22222211         2245


Q ss_pred             eeEEEeCCCCC-eEEEEccCCcEEEEeccccccccccccceeEeecccc------cccEEEEEEecCCCEEEEEeCCCcE
Q 035621          225 IMGLALDPTET-DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH------DGVVVSVMMMNEGKNLVSAAEDGSV  297 (387)
Q Consensus       225 v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~dg~i  297 (387)
                      +.+++++|... +++.+..+..+..+|.... ..      ....+..+.      -...-.|+|.++|++.+++ +-+..
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~-~~------~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlf  244 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELDRQGR-VV------SSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLF  244 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE-TT---EE------EEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEECCCCC-EE------EEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceE
Confidence            78899999764 4555666788888885431 11      111111111      1346789999999766665 55555


Q ss_pred             EEE
Q 035621          298 YIW  300 (387)
Q Consensus       298 ~iw  300 (387)
                      ++|
T Consensus       245 y~f  247 (248)
T PF06977_consen  245 YRF  247 (248)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.02  E-value=0.00046  Score=64.87  Aligned_cols=144  Identities=10%  Similarity=0.141  Sum_probs=94.2

Q ss_pred             CCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCC-eEEEEEcC-----CCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621           95 GSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKP-VSCLKISP-----DGSLLISGGDDGVIATVPIFQLVDEHTDDKNP  167 (387)
Q Consensus        95 ~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  167 (387)
                      .++|+.- .....|+-.|++.|+.+..+..|... |..++-..     .....+.|-.+..+..||.|-.          
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~----------  562 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS----------  562 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCC----------
Confidence            3444433 34578999999999999999877644 55544321     1234677888889999999631          


Q ss_pred             CccceE---eeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccC
Q 035621          168 DDLMLQ---KFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSD  243 (387)
Q Consensus       168 ~~~~~~---~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d  243 (387)
                      ..+.+.   ..........|++-..+   .+||.|+.+|.||+||--..+....++ ...+|..+..+.||+++++.+..
T Consensus       563 ~~k~v~~~~k~Y~~~~~Fs~~aTt~~---G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  563 GNKLVDSQSKQYSSKNNFSCFATTED---GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             CCceeeccccccccCCCceEEEecCC---ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence            111111   01123345666665554   589999999999999943222222333 47899999999999999887754


Q ss_pred             CcEEEEecc
Q 035621          244 GLIYKGLLK  252 (387)
Q Consensus       244 g~i~i~d~~  252 (387)
                       .+.+++..
T Consensus       640 -yLlLi~t~  647 (794)
T PF08553_consen  640 -YLLLIDTL  647 (794)
T ss_pred             -eEEEEEEe
Confidence             56666653

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.02  E-value=0.00092  Score=46.00  Aligned_cols=100  Identities=19%  Similarity=0.228  Sum_probs=70.2

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621          128 VSCLKISP---DG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC  203 (387)
Q Consensus       128 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~  203 (387)
                      |++|++..   +| +.|++|+.|..|++|+-              ...+.++. -.+.|.+++-...   ..|+.+-.+|
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--------------~e~~~Ei~-e~~~v~~L~~~~~---~~F~Y~l~NG   63 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--------------DEIVAEIT-ETDKVTSLCSLGG---GRFAYALANG   63 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--------------CcEEEEEe-cccceEEEEEcCC---CEEEEEecCC
Confidence            56666654   33 58999999999999954              34455554 3456777765544   6799999999


Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEeCCCC----CeEEEEccCCcEE
Q 035621          204 TCKFWRLLNGTHLSTVTFPCAIMGLALDPTE----TDFFAAGSDGLIY  247 (387)
Q Consensus       204 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~  247 (387)
                      +|-+|+-  ...+..++.+..+.++++..-.    ..|++|-.+|.|-
T Consensus        64 TVGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   64 TVGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            9999975  4556666666667777665432    4688888888774

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.90  E-value=0.0018  Score=57.35  Aligned_cols=147  Identities=14%  Similarity=0.084  Sum_probs=88.7

Q ss_pred             cccCCCcEEEee---CCC-CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCC--eEEEEEccCCCc
Q 035621            3 HHLPCNEVILTS---SPE-GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSG--SVHLYNLWSSTP   76 (387)
Q Consensus         3 ~~s~~~~~l~~~---~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~--~v~vw~~~~~~~   76 (387)
                      +|+|++..++.-   ... ..++++++.+++....+. ..+.-...+|+|++...+-   +...||  .|.+.|+..+..
T Consensus       199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f---~~~rdg~~~iy~~dl~~~~~  274 (425)
T COG0823         199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAF---SSSRDGSPDIYLMDLDGKNL  274 (425)
T ss_pred             ccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEE---EECCCCCccEEEEcCCCCcc
Confidence            588888766554   222 459999999887655443 2223345678886544322   244455  466667776664


Q ss_pred             ccccCCCCCeeeEEeccCCCEEEEecC-CC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC-Cc--EE
Q 035621           77 LHNIPVPEPVAPLATTADGSYLFTGGL-SG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD-GV--IA  150 (387)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~--i~  150 (387)
                      .+.....+.-..-.|+|||+.++..+. .|  .|.+++++.+.. ..+....+.-..-.|+|||++++..+.. |.  |.
T Consensus       275 ~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~  353 (425)
T COG0823         275 PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDID  353 (425)
T ss_pred             eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeE
Confidence            442222333346789999999887653 33  677788766654 3333233322377899999988877753 44  44


Q ss_pred             EEeC
Q 035621          151 TVPI  154 (387)
Q Consensus       151 iwd~  154 (387)
                      +.|+
T Consensus       354 ~~~~  357 (425)
T COG0823         354 KNDL  357 (425)
T ss_pred             Eecc
Confidence            4443

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.89  E-value=0.00012  Score=65.82  Aligned_cols=109  Identities=13%  Similarity=0.071  Sum_probs=83.7

Q ss_pred             CceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecc
Q 035621          193 NSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLAN  270 (387)
Q Consensus       193 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  270 (387)
                      ..+++.|+.-|.+++|+-..++....-.  ....+..++.+++..++|+|+..|.|.++-++......   .........
T Consensus        45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~---~~~~t~~d~  121 (726)
T KOG3621|consen   45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD---LDYVTPCDK  121 (726)
T ss_pred             CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc---ceeeccccc
Confidence            5899999999999999976665433222  34566778899999999999999999999887632111   111222233


Q ss_pred             cccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          271 RHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       271 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      .|...|++++|++++..+.+|..-|.|..-.+++
T Consensus       122 ~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  122 SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            4788999999999999999999999999988887

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.87  E-value=0.012  Score=49.72  Aligned_cols=227  Identities=14%  Similarity=0.081  Sum_probs=123.7

Q ss_pred             EeccCCCEE-EEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCC
Q 035621           90 ATTADGSYL-FTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPD  168 (387)
Q Consensus        90 ~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  168 (387)
                      .|.++...| .+--..+.|.-|+..+++.. .+.. .+.+.++..-..+..|+++.. | +.+++....          .
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-p~~~~~~~~~d~~g~Lv~~~~-g-~~~~~~~~~----------~   96 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-PGGFSSGALIDAGGRLIACEH-G-VRLLDPDTG----------G   96 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-CCCcccceeecCCCeEEEEcc-c-cEEEeccCC----------c
Confidence            466666644 44446778999998766532 2322 233344443333444444433 2 345554110          0


Q ss_pred             c-cceEeee-c-cCCCeEEEEEeeCCCCceEEEEeC------C---CcEEEEeCC-CCcEEEEEec-CCceeEEEeCCCC
Q 035621          169 D-LMLQKFV-A-HNDSVTAITCCIGSFNSIIISCSM------D---CTCKFWRLL-NGTHLSTVTF-PCAIMGLALDPTE  234 (387)
Q Consensus       169 ~-~~~~~~~-~-~~~~i~~~~~~~~~~~~~l~s~~~------d---~~i~iwd~~-~~~~~~~~~~-~~~v~~~~~~~~~  234 (387)
                      . ..+.... + .....+.+.+.|++  .+.++...      +   ..-.+|-+. .+...+.+.. -...+.++||||+
T Consensus        97 ~~t~~~~~~~~~~~~r~ND~~v~pdG--~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg  174 (307)
T COG3386          97 KITLLAEPEDGLPLNRPNDGVVDPDG--RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDG  174 (307)
T ss_pred             eeEEeccccCCCCcCCCCceeEcCCC--CEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCC
Confidence            0 0011000 0 11233455555553  44443332      0   111344444 4555555443 4566889999999


Q ss_pred             CeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC-cEEEEECCCccEEEEee
Q 035621          235 TDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG-SVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       235 ~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~  312 (387)
                      +.++.+.. .+.|+.|++........  ............+..-.++...+|.+.+++..+| .|.+|+.+ |+++..+.
T Consensus       175 ~tly~aDT~~~~i~r~~~d~~~g~~~--~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~  251 (307)
T COG3386         175 KTLYVADTPANRIHRYDLDPATGPIG--GRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK  251 (307)
T ss_pred             CEEEEEeCCCCeEEEEecCcccCccC--CcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence            88888765 58899888874111111  1121222223456777888888998886555554 89999988 99999988


Q ss_pred             cccCCCceeEEEEecCCCceeeEEEe
Q 035621          313 NELAGSISEMVIATGIGGSRGCGVVK  338 (387)
Q Consensus       313 ~~~~~~v~~~~~~~~~~~~~~~~~~~  338 (387)
                      ... ..+++++|...  +...+++..
T Consensus       252 lP~-~~~t~~~FgG~--~~~~L~iTs  274 (307)
T COG3386         252 LPV-KRPTNPAFGGP--DLNTLYITS  274 (307)
T ss_pred             CCC-CCCccceEeCC--CcCEEEEEe
Confidence            764 47788877643  233444443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.85  E-value=0.017  Score=50.60  Aligned_cols=254  Identities=14%  Similarity=0.085  Sum_probs=131.1

Q ss_pred             CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc-CC----------------C
Q 035621           63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS-AH----------------D  125 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~----------------~  125 (387)
                      .+.+.++|+++++..........+....|+|+|+.++... ++.|.+++..+++..+.-. +.                -
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~  100 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF  100 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence            4678999998876555444467899999999999999885 6789999987774432211 10                1


Q ss_pred             CCeEEEEEcCCCCEEEEEeCC-CcEEEEeCCccccc-------------CCCCCC----------CCccc--eEee---e
Q 035621          126 KPVSCLKISPDGSLLISGGDD-GVIATVPIFQLVDE-------------HTDDKN----------PDDLM--LQKF---V  176 (387)
Q Consensus       126 ~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~-------------~~~~~~----------~~~~~--~~~~---~  176 (387)
                      +.-..+-|+||+++|+....| ..+..+.+......             .....+          .....  +...   .
T Consensus       101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~  180 (353)
T PF00930_consen  101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLN  180 (353)
T ss_dssp             SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHH
T ss_pred             ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccC
Confidence            123568899999988877644 44444433211111             000000          00000  0000   1


Q ss_pred             ccCCCeEEEEEeeCCCCceEEE--EeCCC---cEEEEeCCCCcEEEEEe--cCCc---eeEEEeC-CCCC-eEEEEccCC
Q 035621          177 AHNDSVTAITCCIGSFNSIIIS--CSMDC---TCKFWRLLNGTHLSTVT--FPCA---IMGLALD-PTET-DFFAAGSDG  244 (387)
Q Consensus       177 ~~~~~i~~~~~~~~~~~~~l~s--~~~d~---~i~iwd~~~~~~~~~~~--~~~~---v~~~~~~-~~~~-~l~~~~~dg  244 (387)
                      .....+..+.|.+++  ..|+.  ...+.   .+.++|..++.....+.  .+..   .....+. +++. ++.....+|
T Consensus       181 ~~~~yl~~v~W~~d~--~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G  258 (353)
T PF00930_consen  181 PQDYYLTRVGWSPDG--KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG  258 (353)
T ss_dssp             TSSEEEEEEEEEETT--EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS
T ss_pred             CCccCcccceecCCC--cEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC
Confidence            223456778888875  42332  23222   46677887766543333  2222   2345554 5554 445555677


Q ss_pred             cEEEEeccccccccccccceeEeecccccccEEE-EEEecCCCEEE-EEeCC----CcEEEEECCCccEEEEeecccCCC
Q 035621          245 LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS-VMMMNEGKNLV-SAAED----GSVYIWEIEKRQVVMVLKNELAGS  318 (387)
Q Consensus       245 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~-s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~  318 (387)
                      .-+++-+....       .....+ ....-.|.. +.++++++.|. ++..+    ..|+.-++..+..+..+..... .
T Consensus       259 ~~hly~~~~~~-------~~~~~l-T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~-~  329 (353)
T PF00930_consen  259 YRHLYLYDLDG-------GKPRQL-TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDG-D  329 (353)
T ss_dssp             SEEEEEEETTS-------SEEEES-S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSS-T
T ss_pred             CcEEEEEcccc-------cceecc-ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCC-C
Confidence            66665554421       112222 233445644 67888877554 55442    2566666663344445543322 1


Q ss_pred             ceeEEEEecC
Q 035621          319 ISEMVIATGI  328 (387)
Q Consensus       319 v~~~~~~~~~  328 (387)
                      -..+.|+++.
T Consensus       330 ~~~~~~Spdg  339 (353)
T PF00930_consen  330 HYSASFSPDG  339 (353)
T ss_dssp             TEEEEE-TTS
T ss_pred             ceEEEECCCC
Confidence            2466666654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>smart00320 WD40 WD40 repeats

Probab=97.84  E-value=6.2e-05  Score=41.24  Aligned_cols=38  Identities=37%  Similarity=0.691  Sum_probs=33.6

Q ss_pred             ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621          116 DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP  153 (387)
Q Consensus       116 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  153 (387)
                      ++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45666778889999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.84  E-value=0.032  Score=53.48  Aligned_cols=115  Identities=17%  Similarity=0.256  Sum_probs=74.0

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCC--------ceeEEEcCc------------cceeeeccccCCCCCeEE
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSP--------RRGLTFAGK------------PFIAASHISPTTGSGSVH   67 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~~------------~~~~~~~~~~~~~d~~v~   67 (387)
                      +..|+.++.++.|.-.|..||+.+-++......        .+.+++...            .......++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            557777888899999999999998877533211        223333221            011223455577899999


Q ss_pred             EEEccCCCcccccCCCCCee-------------eEEecc--CCCEEEEecC----------CCcEEEEeCCCCceeEEcc
Q 035621           68 LYNLWSSTPLHNIPVPEPVA-------------PLATTA--DGSYLFTGGL----------SGNVYAISVPKGDILRSFS  122 (387)
Q Consensus        68 vw~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~  122 (387)
                      -.|.++|+....+...+.+.             .+.-.|  .+..+++|+.          +|.|+-+|.++|+.+..+.
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence            99999999887665433221             111112  2345666642          5889999999999887764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=0.00011  Score=65.10  Aligned_cols=95  Identities=13%  Similarity=-0.006  Sum_probs=75.3

Q ss_pred             cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCcee-EEEeCCCCCeEEEEccCCcEEEEeccccc
Q 035621          178 HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIM-GLALDPTETDFFAAGSDGLIYKGLLKYQS  255 (387)
Q Consensus       178 ~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  255 (387)
                      -...+..+.|+|..  .++|.+..+|.|.+..+. .+.+.+++ +...++ +++|.|||+.|++|-.||+|++.|...+.
T Consensus        19 l~~~i~~~ewnP~~--dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   19 LPINIKRIEWNPKM--DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             cccceEEEEEcCcc--chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            34567788999986  899999999999999988 88888888 555666 99999999999999999999999999854


Q ss_pred             cccccccceeEeecccccccEEEEEEec
Q 035621          256 RQQMHKGQELVTLANRHDGVVVSVMMMN  283 (387)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~  283 (387)
                      ...        .....-...|.++-|++
T Consensus        96 ~l~--------~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLV--------SFLFSVETDISKGIWDR  115 (665)
T ss_pred             cee--------ccccccccchheeeccc
Confidence            332        21223455677777753

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.00019  Score=63.71  Aligned_cols=95  Identities=20%  Similarity=0.257  Sum_probs=75.1

Q ss_pred             cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEE-EEEEecCCCEEEEEeCCCcEEE
Q 035621          221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV-SVMMMNEGKNLVSAAEDGSVYI  299 (387)
Q Consensus       221 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~i  299 (387)
                      .+..+..+.|+|.-..+|.+..+|.+.+..++.         +.+..+. -|...++ +++|.|||+.||.|-.||+|++
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---------qRlwtip-~p~~~v~~sL~W~~DGkllaVg~kdG~I~L   88 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNW---------QRLWTIP-IPGENVTASLCWRPDGKLLAVGFKDGTIRL   88 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEecc---------ceeEecc-CCCCccceeeeecCCCCEEEEEecCCeEEE
Confidence            456788899999999999999999998888774         2222221 2455555 9999999999999999999999


Q ss_pred             EECCCccEEEEeecccCCCceeEEEE
Q 035621          300 WEIEKRQVVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~v~~~~~~  325 (387)
                      -|++++..+..+.......|+.+.|+
T Consensus        89 ~Dve~~~~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   89 HDVEKGGRLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             EEccCCCceeccccccccchheeecc
Confidence            99999999888544444567777775

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.73  E-value=0.016  Score=47.02  Aligned_cols=177  Identities=13%  Similarity=0.178  Sum_probs=103.6

Q ss_pred             cccCCCcEEEeeCCCC--cEEEEeCCCCceeEeccCCCC-CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621            3 HHLPCNEVILTSSPEG--PITAYNPSSGAILAHFSGSRS-PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~   79 (387)
                      .|..+|.++-+.+.-|  .|+.+|+.+++......-... --..++...+..+...     -.++...+||..+.+.+.+
T Consensus        51 ~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLT-----Wk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   51 EFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLT-----WKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEE-----SSSSEEEEEETTTTEEEEE
T ss_pred             EecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEE-----ecCCeEEEEccccceEEEE
Confidence            4556777777777666  699999999987765532221 1344555566555543     4789999999999988888


Q ss_pred             cCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCC--C---CCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621           80 IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH--D---KPVSCLKISPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  154 (387)
                      +..+..=..++  .+++.|+.......++++|.++.+....+.-.  .   ..++-+.+- +|...+=.=....|...|.
T Consensus       126 ~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp  202 (264)
T PF05096_consen  126 FPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDP  202 (264)
T ss_dssp             EE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred             EecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeC
Confidence            88776666666  56777888777788999999887766655421  1   234445554 4433333333333333333


Q ss_pred             CcccccCCCCCCCCccceEee---------------eccCCCeEEEEEeeCCCCceEEEEe
Q 035621          155 FQLVDEHTDDKNPDDLMLQKF---------------VAHNDSVTAITCCIGSFNSIIISCS  200 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~~~l~s~~  200 (387)
                                  .++.....+               .....-.+.|++.|.. +++++||-
T Consensus       203 ------------~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~-~~l~vTGK  250 (264)
T PF05096_consen  203 ------------ETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET-DRLFVTGK  250 (264)
T ss_dssp             ------------TT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT-TEEEEEET
T ss_pred             ------------CCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCC-CEEEEEeC
Confidence                        112111111               1114567899998886 57777774

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.72  E-value=0.025  Score=48.65  Aligned_cols=203  Identities=13%  Similarity=0.073  Sum_probs=105.5

Q ss_pred             EEeccCCCEEEEec-CCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621           89 LATTADGSYLFTGG-LSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDK  165 (387)
Q Consensus        89 ~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  165 (387)
                      =+|.++|+.|+.++ .+|  .+.+.|+.+++..+.-.+.........++|+++.++-......|+-.|+.          
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~----------  110 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLD----------  110 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETT----------
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECC----------
Confidence            46788887666554 344  78888998887655443222223345677888877766666788888883          


Q ss_pred             CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC----------------------CCcEEEEeCCCCcEEEEEecCC
Q 035621          166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM----------------------DCTCKFWRLLNGTHLSTVTFPC  223 (387)
Q Consensus       166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----------------------d~~i~iwd~~~~~~~~~~~~~~  223 (387)
                        +.+....+......+-...|..+.++..++..-.                      ...|.--|+.+|+....+....
T Consensus       111 --T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~  188 (386)
T PF14583_consen  111 --TLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD  188 (386)
T ss_dssp             --T--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS
T ss_pred             --cCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc
Confidence              3333334444455555566665555555543311                      2346677888888777777788


Q ss_pred             ceeEEEeCCCCCeEEEEccCC-----cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE-----EeC
Q 035621          224 AIMGLALDPTETDFFAAGSDG-----LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS-----AAE  293 (387)
Q Consensus       224 ~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-----~~~  293 (387)
                      -+..+.|+|....+++-+..|     .-++|-++.......    ++...  .....+..=-|.|||..|.-     ++.
T Consensus       189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~----~v~~~--~~~e~~gHEfw~~DG~~i~y~~~~~~~~  262 (386)
T PF14583_consen  189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVK----KVHRR--MEGESVGHEFWVPDGSTIWYDSYTPGGQ  262 (386)
T ss_dssp             -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---E----ESS-----TTEEEEEEEE-TTSS-EEEEEEETTT-
T ss_pred             cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcce----eeecC--CCCcccccccccCCCCEEEEEeecCCCC
Confidence            889999999887777665533     136676665322111    11100  11234555578999986653     233


Q ss_pred             CCcEEEEECCCccEEE
Q 035621          294 DGSVYIWEIEKRQVVM  309 (387)
Q Consensus       294 dg~i~iwd~~~~~~~~  309 (387)
                      +..|.-+|+.+++...
T Consensus       263 ~~~i~~~d~~t~~~~~  278 (386)
T PF14583_consen  263 DFWIAGYDPDTGERRR  278 (386)
T ss_dssp             -EEEEEE-TTT--EEE
T ss_pred             ceEEEeeCCCCCCceE
Confidence            5578888998876543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.70  E-value=5.9e-05  Score=58.43  Aligned_cols=61  Identities=15%  Similarity=0.095  Sum_probs=40.0

Q ss_pred             CceEEEEeCCCcEEEEeCCCC-cEEEEEec-CCce-eEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621          193 NSIIISCSMDCTCKFWRLLNG-THLSTVTF-PCAI-MGLALDPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       193 ~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~-~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                      +..++.|+.+|.|.+|..... .....+.. ...+ ..+.--.++.+.++++.+|.|+.|++..
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p  133 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP  133 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc
Confidence            367899999999999987621 11111111 1222 2233334556888999999999999886

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.69  E-value=0.036  Score=49.81  Aligned_cols=213  Identities=15%  Similarity=0.119  Sum_probs=108.1

Q ss_pred             eeeEEeccCCCEEEEe-cCCC----cEEEEeCCCCceeEEc-cCCCCCeEEEEEcCCCCEEEEEeCCC-----------c
Q 035621           86 VAPLATTADGSYLFTG-GLSG----NVYAISVPKGDILRSF-SAHDKPVSCLKISPDGSLLISGGDDG-----------V  148 (387)
Q Consensus        86 v~~~~~~~~~~~l~~~-~~dg----~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~  148 (387)
                      +..+.++|+|++++.+ +..|    .++++|+++++.+... ..  .....+.|.++++.|+....+.           .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            3467899999998866 3333    6999999999776532 21  1123499999988776665433           3


Q ss_pred             EEEEeCCcccccCCCCCCCCccceEeeeccCCC--eEEEEEeeCCCCceEEEE-eCC---CcEEEEeCCCC----cEEEE
Q 035621          149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS--VTAITCCIGSFNSIIISC-SMD---CTCKFWRLLNG----THLST  218 (387)
Q Consensus       149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~s~-~~d---~~i~iwd~~~~----~~~~~  218 (387)
                      |+.|.+...          .......+......  ...+..++++  ++++.. ...   ..+.+.|+..+    .....
T Consensus       204 v~~~~~gt~----------~~~d~lvfe~~~~~~~~~~~~~s~d~--~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~  271 (414)
T PF02897_consen  204 VYRHKLGTP----------QSEDELVFEEPDEPFWFVSVSRSKDG--RYLFISSSSGTSESEVYLLDLDDGGSPDAKPKL  271 (414)
T ss_dssp             EEEEETTS-----------GGG-EEEEC-TTCTTSEEEEEE-TTS--SEEEEEEESSSSEEEEEEEECCCTTTSS-SEEE
T ss_pred             EEEEECCCC----------hHhCeeEEeecCCCcEEEEEEecCcc--cEEEEEEEccccCCeEEEEeccccCCCcCCcEE
Confidence            677777321          11112233333322  4456666554  665543 332   34788888774    22333


Q ss_pred             E-ecCCceeEEEeCCCCCeEEEEcc---CCcEEEEeccccccccccccceeEeecccccc--cEEEEEEecCCCEEE-EE
Q 035621          219 V-TFPCAIMGLALDPTETDFFAAGS---DGLIYKGLLKYQSRQQMHKGQELVTLANRHDG--VVVSVMMMNEGKNLV-SA  291 (387)
Q Consensus       219 ~-~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~-s~  291 (387)
                      + .....+....-+..+.+++....   ++.|...++......      ........+..  .+..+..  .+.+|+ .-
T Consensus       272 l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~------~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~  343 (414)
T PF02897_consen  272 LSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPA------EWWTVLIPEDEDVSLEDVSL--FKDYLVLSY  343 (414)
T ss_dssp             EEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGG------GEEEEEE--SSSEEEEEEEE--ETTEEEEEE
T ss_pred             EeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccc------cceeEEcCCCCceeEEEEEE--ECCEEEEEE
Confidence            3 32333333222224434443322   456666666653321      01111223444  3444444  344444 44


Q ss_pred             eCCC--cEEEEECCCccEEEEeecccCCCce
Q 035621          292 AEDG--SVYIWEIEKRQVVMVLKNELAGSIS  320 (387)
Q Consensus       292 ~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~  320 (387)
                      -.++  .|+++++..+.....+.....+.|.
T Consensus       344 ~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~  374 (414)
T PF02897_consen  344 RENGSSRLRVYDLDDGKESREIPLPEAGSVS  374 (414)
T ss_dssp             EETTEEEEEEEETT-TEEEEEEESSSSSEEE
T ss_pred             EECCccEEEEEECCCCcEEeeecCCcceEEe
Confidence            4444  5889999855555555544444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.68  E-value=0.018  Score=50.52  Aligned_cols=92  Identities=13%  Similarity=0.111  Sum_probs=58.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEE---EeCC-----CCceeEec----cCCC-CCceeEEEcCc---c----ceeeeccccCC
Q 035621            2 LHHLPCNEVILTSSPEGPITA---YNPS-----SGAILAHF----SGSR-SPRRGLTFAGK---P----FIAASHISPTT   61 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~i---wd~~-----~~~~~~~~----~~~~-~~v~~~~~~~~---~----~~~~~~~~~~~   61 (387)
                      ++.+|++++||.|..+..+.+   |+..     .+......    .... ..|+++.+-|=   .    ......++.|.
T Consensus         7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~   86 (415)
T PF14655_consen    7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT   86 (415)
T ss_pred             EEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe
Confidence            578999999999988776655   5431     11222222    2111 46888877661   1    12245677799


Q ss_pred             CCCeEEEEEccCCCcccccCCCCCeeeEEecc
Q 035621           62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTA   93 (387)
Q Consensus        62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~   93 (387)
                      .+|.|++|.....-.....-|+++|..+.+..
T Consensus        87 ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   87 SSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             cccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence            99999999963333344555788998888754

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.67  E-value=0.034  Score=48.98  Aligned_cols=236  Identities=10%  Similarity=0.072  Sum_probs=124.8

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCc-----eeEeccCCCCCceeEEEcC---ccceeeeccccCCCCCeEEEEEccCC--C-
Q 035621            7 CNEVILTSSPEGPITAYNPSSGA-----ILAHFSGSRSPRRGLTFAG---KPFIAASHISPTTGSGSVHLYNLWSS--T-   75 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~d~~v~vw~~~~~--~-   75 (387)
                      +...+++|+..|.++||++....     .+-+. .-..||..+..-.   +.  ....++ .-.-..+.+|.+...  . 
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~--~~~~La-VLhP~kl~vY~v~~~~g~~  111 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGS--EDLQLA-VLHPRKLSVYSVSLVDGTV  111 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCC--CcceEE-EecCCEEEEEEEEecCCCc
Confidence            44689999999999999985433     11111 1345666665432   00  000011 123456667766221  1 


Q ss_pred             ---------cccccCCCCCeeeEEeccC-----CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE
Q 035621           76 ---------PLHNIPVPEPVAPLATTAD-----GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI  141 (387)
Q Consensus        76 ---------~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  141 (387)
                               .+.....+.....+++-|-     ..++.+-+.||.+.+|+-+.-...+.+.. .--.-.+.|.+..+.++
T Consensus       112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfv  190 (418)
T PF14727_consen  112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFV  190 (418)
T ss_pred             ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEE
Confidence                     1111123344555555442     35788889999999999655444444443 22334578888888999


Q ss_pred             EEeCCCcEEEEeCCcccccCCCCC-----------CCCccceEeeeccCCCeEEEEEeeC--CCCceEEEEeCCCcEEEE
Q 035621          142 SGGDDGVIATVPIFQLVDEHTDDK-----------NPDDLMLQKFVAHNDSVTAITCCIG--SFNSIIISCSMDCTCKFW  208 (387)
Q Consensus       142 ~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~l~s~~~d~~i~iw  208 (387)
                      +++.+..+..|....+........           ...-.+--++ .-...+..+.....  .....++-|  ..++.+.
T Consensus       191 t~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~-nlGE~~l~i~v~~~~~~~~~IvvLg--er~Lf~l  267 (418)
T PF14727_consen  191 TASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSF-NLGEQALDIQVVRFSSSESDIVVLG--ERSLFCL  267 (418)
T ss_pred             EecCceeEEEecHHHhhhccccccccccccccccccccccceeEE-ECCceeEEEEEEEcCCCCceEEEEe--cceEEEE
Confidence            999999999998754332221111           0001111111 12234444444332  112333333  3456666


Q ss_pred             eCCCCcEEEEEecCCceeEEEe-------CCC-CCeEEEEccCCcEEEEec
Q 035621          209 RLLNGTHLSTVTFPCAIMGLAL-------DPT-ETDFFAAGSDGLIYKGLL  251 (387)
Q Consensus       209 d~~~~~~~~~~~~~~~v~~~~~-------~~~-~~~l~~~~~dg~i~i~d~  251 (387)
                      +. +|......+......+++.       .|. ...+++++.++.+.+|.=
T Consensus       268 ~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d  317 (418)
T PF14727_consen  268 KD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED  317 (418)
T ss_pred             cC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC
Confidence            64 4555544444443333321       122 125888888999888853

>smart00320 WD40 WD40 repeats

Probab=97.65  E-value=0.00015  Score=39.56  Aligned_cols=32  Identities=41%  Similarity=0.784  Sum_probs=29.4

Q ss_pred             ccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          270 NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       270 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      ..|...|.+++|.+++.++++++.|+.+++|+
T Consensus         9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            36788999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.64  E-value=0.0011  Score=57.90  Aligned_cols=142  Identities=10%  Similarity=0.162  Sum_probs=100.0

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccce---eeeccccCCCCCeEEEEEccCCCc-------ccc
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFI---AASHISPTTGSGSVHLYNLWSSTP-------LHN   79 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~d~~v~vw~~~~~~~-------~~~   79 (387)
                      +|.++.....++--|++.|+.+.+++-+.. |+-+.+.|+...   ....-+.|-.+..|.-||.+-...       -+.
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            345566667788899999999999987777 777778774322   122223366788999999753221       112


Q ss_pred             cCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621           80 IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  154 (387)
                      +.......|++-..+| ++++|+.+|.|++||--..+....+++...+|..+..+.+|++++..+. .++.+.++
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t  499 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT  499 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence            2234556777776666 7999999999999996333444557788899999999999998876654 56666665

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.58  E-value=0.017  Score=46.76  Aligned_cols=226  Identities=13%  Similarity=0.115  Sum_probs=133.8

Q ss_pred             cCCCcccccCCCCCeeeEEeccCC-CEEEEecCCCc-EEEEeCCCCceeEEccCCCC--CeEEEEEcCCCCEEEEEeCC-
Q 035621           72 WSSTPLHNIPVPEPVAPLATTADG-SYLFTGGLSGN-VYAISVPKGDILRSFSAHDK--PVSCLKISPDGSLLISGGDD-  146 (387)
Q Consensus        72 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d-  146 (387)
                      +.++.+.....+.....++++|.. .-++.+-.-|+ ..++|....+...++...++  -.-.=.|+|||.+|...-.| 
T Consensus        56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf  135 (366)
T COG3490          56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF  135 (366)
T ss_pred             cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence            356777777777888889999954 44666655564 57889888876665542221  11223699999998876544 


Q ss_pred             ----CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC------------------CCc
Q 035621          147 ----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM------------------DCT  204 (387)
Q Consensus       147 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~------------------d~~  204 (387)
                          |.|-+||.+.           ....+-++..|.-.-..+.+.+++  +.++.+..                  .-+
T Consensus       136 d~~rGViGvYd~r~-----------~fqrvgE~~t~GiGpHev~lm~DG--rtlvvanGGIethpdfgR~~lNldsMePS  202 (366)
T COG3490         136 DPNRGVIGVYDARE-----------GFQRVGEFSTHGIGPHEVTLMADG--RTLVVANGGIETHPDFGRTELNLDSMEPS  202 (366)
T ss_pred             CCCCceEEEEeccc-----------ccceecccccCCcCcceeEEecCC--cEEEEeCCceecccccCccccchhhcCcc
Confidence                7799999853           333455666777666778888775  66665432                  123


Q ss_pred             EEEEeCCCCcEEEEEec-----CCceeEEEeCCCCCeEEEEccCCcE-----EEEeccccccccccccceeEeecccccc
Q 035621          205 CKFWRLLNGTHLSTVTF-----PCAIMGLALDPTETDFFAAGSDGLI-----YKGLLKYQSRQQMHKGQELVTLANRHDG  274 (387)
Q Consensus       205 i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i-----~i~d~~~~~~~~~~~~~~~~~~~~~~~~  274 (387)
                      +.+.|..+|..+.+...     ...+..++..+||..++.+-..|.-     .+=-...+.......  ........-..
T Consensus       203 lvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~--~pee~~~~~an  280 (366)
T COG3490         203 LVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLD--LPEEQTAAFAN  280 (366)
T ss_pred             EEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccC--CCHHHHHHHHh
Confidence            55556566666655543     3467888888888766655332211     000000000000000  00000012234


Q ss_pred             cEEEEEEecCCCEEE-EEeCCCcEEEEECCCccEEEEee
Q 035621          275 VVVSVMMMNEGKNLV-SAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       275 ~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      .|-+++.+.+..+++ |+-..+..-+||..+|.++....
T Consensus       281 YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~  319 (366)
T COG3490         281 YIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA  319 (366)
T ss_pred             hhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence            577888876555554 55456678899999999986554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.57  E-value=0.0035  Score=59.64  Aligned_cols=103  Identities=23%  Similarity=0.350  Sum_probs=75.0

Q ss_pred             CCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccce
Q 035621           94 DGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML  172 (387)
Q Consensus        94 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  172 (387)
                      .+..++.|+..|.+-..|+... .+...-..-.++|++++|+.+|..++.|-.+|.|.+||+            ......
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~------------~~~k~l  165 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDM------------HRAKIL  165 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEc------------cCCcce
Confidence            4567889999999998887542 111222234679999999999999999999999999999            566778


Q ss_pred             EeeeccCCCeEEEEEee-CCCCceEEEEeCCCcEEEEeC
Q 035621          173 QKFVAHNDSVTAITCCI-GSFNSIIISCSMDCTCKFWRL  210 (387)
Q Consensus       173 ~~~~~~~~~i~~~~~~~-~~~~~~l~s~~~d~~i~iwd~  210 (387)
                      +.+..|..+.+.+-+.. .+.+..++++..-|.  +|.+
T Consensus       166 ~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  166 KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            88887877777665432 222356777776665  5654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.50  E-value=0.026  Score=49.65  Aligned_cols=42  Identities=17%  Similarity=0.211  Sum_probs=34.8

Q ss_pred             CCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcC
Q 035621            6 PCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAG   48 (387)
Q Consensus         6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~   48 (387)
                      ||...++.|..+|.|++|.. +|..+..-.-|..+|..+....
T Consensus        77 ~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   77 PDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             CCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence            67789999999999999995 7877766667888888887754

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.49  E-value=0.084  Score=50.68  Aligned_cols=198  Identities=12%  Similarity=0.089  Sum_probs=108.9

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEccCCCCC--------eEEEEEcC----------------CCCEEEEEeCCCcEE
Q 035621           95 GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP--------VSCLKISP----------------DGSLLISGGDDGVIA  150 (387)
Q Consensus        95 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~dg~i~  150 (387)
                      +..++.++.++.|.-.|..+|+.+.++......        .+.+++..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            567888888899999999999988776532210        12233321                234788888999988


Q ss_pred             EEeCCcccccCCCCCCCCccceEeeeccCCCe-------------EEEEEeeCCCCceEEEEeC----------CCcEEE
Q 035621          151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV-------------TAITCCIGSFNSIIISCSM----------DCTCKF  207 (387)
Q Consensus       151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------------~~~~~~~~~~~~~l~s~~~----------d~~i~i  207 (387)
                      -.|.            .+++.+..+.. .+.+             ..+.-.|--.+..++.|+.          +|.|+-
T Consensus       274 ALDA------------~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       274 ALDA------------DTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             EEEC------------CCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            8887            33333333211 1110             0011111111245666643          688999


Q ss_pred             EeCCCCcEEEEEecCCc-------------------eeEEEeCCCCCeEEEEccCC------------------cEEEEe
Q 035621          208 WRLLNGTHLSTVTFPCA-------------------IMGLALDPTETDFFAAGSDG------------------LIYKGL  250 (387)
Q Consensus       208 wd~~~~~~~~~~~~~~~-------------------v~~~~~~~~~~~l~~~~~dg------------------~i~i~d  250 (387)
                      +|.++|+.+..+....+                   -...++++....++.+..+.                  .|.-.|
T Consensus       341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD  420 (764)
T TIGR03074       341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD  420 (764)
T ss_pred             EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence            99999999888752110                   02344555555555443222                  222233


Q ss_pred             ccccccccccccceeEeecc-ccc-------ccEEEEEEec-CCC---EEEEEeCCCcEEEEECCCccEEEEeec
Q 035621          251 LKYQSRQQMHKGQELVTLAN-RHD-------GVVVSVMMMN-EGK---NLVSAAEDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~-~~~-------~~v~~~~~s~-~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      .++++.        .-.+.. .|.       ....-+.+.. +|+   .++.++.+|.+++.|.++|+++...+.
T Consensus       421 ~~TGk~--------~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e  487 (764)
T TIGR03074       421 ATTGKE--------RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE  487 (764)
T ss_pred             CCCCce--------EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence            333221        111111 111       1111122222 553   788999999999999999999987653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.48  E-value=0.04  Score=51.35  Aligned_cols=196  Identities=11%  Similarity=0.085  Sum_probs=100.0

Q ss_pred             CCceeEEEcCccceeeecccc--CCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC------------
Q 035621           39 SPRRGLTFAGKPFIAASHISP--TTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS------------  104 (387)
Q Consensus        39 ~~v~~~~~~~~~~~~~~~~~~--~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------  104 (387)
                      ..+.+.+++|++...+.....  ...|..-.+|-...+.....+........-.|+|+|+.+++....            
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~  429 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT  429 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence            357788888876554432211  112333344433223222333333458889999998877766422            


Q ss_pred             CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee-ccCCCeE
Q 035621          105 GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHNDSVT  183 (387)
Q Consensus       105 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~  183 (387)
                      +.+.+.++..++...   ...+.|..+.|+|||..++... ++.|.+=-+......    . ..-.....+. .-...+.
T Consensus       430 gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G----~-~~l~~~~~l~~~l~~~~~  500 (591)
T PRK13616        430 GQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDG----Q-YALTNPREVGPGLGDTAV  500 (591)
T ss_pred             ceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCC----c-eeecccEEeecccCCccc
Confidence            234444444443322   2356799999999999888766 467766333111000    0 0001111222 2233457


Q ss_pred             EEEEeeCCCCceEEEEeCCCcEEEEeCCC-CcEEEEEec---CCceeEEEeCCCCCeEEEEccCCcEEE
Q 035621          184 AITCCIGSFNSIIISCSMDCTCKFWRLLN-GTHLSTVTF---PCAIMGLALDPTETDFFAAGSDGLIYK  248 (387)
Q Consensus       184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i  248 (387)
                      ++.|..+.  . |+.+..++.-.+|.+.- |.....+..   ..++..++-+++  .+++...+|.+.+
T Consensus       501 ~l~W~~~~--~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l  564 (591)
T PRK13616        501 SLDWRTGD--S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL  564 (591)
T ss_pred             cceEecCC--E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence            88898774  4 44555555444555432 222212122   345666666653  4566666664443

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.44  E-value=0.0084  Score=55.67  Aligned_cols=155  Identities=12%  Similarity=0.062  Sum_probs=83.4

Q ss_pred             CCeEEEEEcCCCCEEEEEe------CCC--cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE
Q 035621          126 KPVSCLKISPDGSLLISGG------DDG--VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII  197 (387)
Q Consensus       126 ~~v~~~~~~~~~~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  197 (387)
                      ..+.+.+++|+|+.++...      .|.  .|.+++..             ... ..+.. ......-.|+|++  ..+.
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-------------g~~-~~lt~-g~~~t~PsWspDG--~~lw  412 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-------------GVA-VQVLE-GHSLTRPSWSLDA--DAVW  412 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-------------Ccc-eeeec-CCCCCCceECCCC--CceE
Confidence            4678899999999877665      243  34444431             111 11111 1236677788774  4444


Q ss_pred             EEeC------------CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccccee
Q 035621          198 SCSM------------DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQEL  265 (387)
Q Consensus       198 s~~~------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  265 (387)
                      +...            .+.+.+.++..+....  ..+..|..+.|+|||..++... +|.|++--+.....-. ......
T Consensus       413 ~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~  488 (591)
T PRK13616        413 VVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNP  488 (591)
T ss_pred             EEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeeccc
Confidence            4432            2334444554443322  3456799999999999888766 4677763222211000 001111


Q ss_pred             EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621          266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  302 (387)
                      ..+...-...+.++.|.+++.++ .+..++.-.+|.+
T Consensus       489 ~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        489 REVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             EEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence            22222333446889999998854 5555444444443

>PHA02713 hypothetical protein; Provisional

Probab=97.36  E-value=0.026  Score=52.55  Aligned_cols=224  Identities=11%  Similarity=0.111  Sum_probs=106.9

Q ss_pred             eEEEEEccCCCcccccCCCCCe-eeEEeccCCCEEEEecCC------CcEEEEeCCCCceeE--EccCCCCCeEEEEEcC
Q 035621           65 SVHLYNLWSSTPLHNIPVPEPV-APLATTADGSYLFTGGLS------GNVYAISVPKGDILR--SFSAHDKPVSCLKISP  135 (387)
Q Consensus        65 ~v~vw~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~  135 (387)
                      .+..||..+++....-..+.+. ......-++...++||.+      ..+..||+.+..-..  .+.........+.+  
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--  350 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--  350 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--
Confidence            4677887766533222222211 111222366677777753      247788887664321  11111112222222  


Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC-------
Q 035621          136 DGSLLISGGDDG-----VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC-------  203 (387)
Q Consensus       136 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~-------  203 (387)
                      +++..+.|+.++     .+..||....          ....+..+.........+.  -+  +.+.+.|+.++       
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~----------~W~~~~~mp~~r~~~~~~~--~~--g~IYviGG~~~~~~~~~~  416 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDD----------KWKMLPDMPIALSSYGMCV--LD--QYIYIIGGRTEHIDYTSV  416 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCC----------eEEECCCCCcccccccEEE--EC--CEEEEEeCCCcccccccc
Confidence            677778888764     3677876321          1111111111111111111  12  46677776542       


Q ss_pred             ----------------cEEEEeCCCCcEE--EEEecCCceeEEEeCCCCCeEEEEccC------CcEEEEeccc-ccccc
Q 035621          204 ----------------TCKFWRLLNGTHL--STVTFPCAIMGLALDPTETDFFAAGSD------GLIYKGLLKY-QSRQQ  258 (387)
Q Consensus       204 ----------------~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~~~~  258 (387)
                                      .+..||..+.+-.  ..+..+..-.+++ .-+++..+.|+.+      ..+..||..+ .....
T Consensus       417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~  495 (557)
T PHA02713        417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL  495 (557)
T ss_pred             cccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE
Confidence                            4667887665422  1111111111122 2245666667653      2356777775 33221


Q ss_pred             ccccceeEeecccccccEEEEEEecCCCEEEEEeCCC--cEEEEECCCccEEEEeecc
Q 035621          259 MHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG--SVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~  314 (387)
                      ..       .+.........+.+  +++..++||.||  ++..||..+.+-...-..|
T Consensus       496 ~~-------~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~  544 (557)
T PHA02713        496 IT-------TTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH  544 (557)
T ss_pred             cc-------ccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence            11       11111222222222  778899999888  7888888887665444444

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.34  E-value=0.063  Score=43.97  Aligned_cols=177  Identities=11%  Similarity=0.065  Sum_probs=110.8

Q ss_pred             cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC--CCeeeEEeccCCCEEEEecCCCcEEEEeC
Q 035621           35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP--EPVAPLATTADGSYLFTGGLSGNVYAISV  112 (387)
Q Consensus        35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  112 (387)
                      .+-...+.++.|+|+...+.    +......-.++=..+|+.+.+++..  .....+.+..+|++.++--.++.+.++.+
T Consensus        82 ~g~~~nvS~LTynp~~rtLF----av~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLF----AVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             ccccccccceeeCCCcceEE----EecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence            44455599999999544333    2555666666666788888888754  45667888888888888778888888877


Q ss_pred             CCCceeEE-------c---cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621          113 PKGDILRS-------F---SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV  182 (387)
Q Consensus       113 ~~~~~~~~-------~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  182 (387)
                      .....+..       +   ...+...-.++|.|....|+.+-+-.-+.||......+.....  ....+.....-.-..+
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~--~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH--ASLDPTADRDLFVLDV  235 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc--cccCcccccceEeecc
Confidence            55422211       1   1125677899999999989988888888888764221110000  0000000000112346


Q ss_pred             EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE
Q 035621          183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV  219 (387)
Q Consensus       183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  219 (387)
                      .++.|.+.. +.+++-+.+++.+.-.|.. |..+..+
T Consensus       236 Sgl~~~~~~-~~LLVLS~ESr~l~Evd~~-G~~~~~l  270 (316)
T COG3204         236 SGLEFNAIT-NSLLVLSDESRRLLEVDLS-GEVIELL  270 (316)
T ss_pred             ccceecCCC-CcEEEEecCCceEEEEecC-CCeeeeE
Confidence            677777654 5788888888888888864 4434444

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.27  E-value=0.081  Score=43.75  Aligned_cols=152  Identities=16%  Similarity=0.083  Sum_probs=87.7

Q ss_pred             CeEEEEEcCCCCEEEEEe---CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621          127 PVSCLKISPDGSLLISGG---DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC  203 (387)
Q Consensus       127 ~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~  203 (387)
                      .+.+.+++++++.++...   ....++++...              ....... ....+....|.++  +...+....+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--------------~~~~~~~-~g~~l~~PS~d~~--g~~W~v~~~~~   87 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--------------GPVRPVL-TGGSLTRPSWDPD--GWVWTVDDGSG   87 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--------------Ccceeec-cCCccccccccCC--CCEEEEEcCCC
Confidence            688999999999777665   33345555431              1111111 2236666777776  35555555566


Q ss_pred             cEEEEe-CCCCcE-EEEEec--C-CceeEEEeCCCCCeEEEEc---cCCcEEEEeccccccccccccceeEeeccccccc
Q 035621          204 TCKFWR-LLNGTH-LSTVTF--P-CAIMGLALDPTETDFFAAG---SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGV  275 (387)
Q Consensus       204 ~i~iwd-~~~~~~-~~~~~~--~-~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  275 (387)
                      ..+++. ..++.. ...+..  . ..|..+.++|||..++...   .++.|++--+........................
T Consensus        88 ~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~  167 (253)
T PF10647_consen   88 GVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSD  167 (253)
T ss_pred             ceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCc
Confidence            666663 333332 222222  1 2899999999999888765   3577777665533222010111222222234568


Q ss_pred             EEEEEEecCCCEEEEEeCCC
Q 035621          276 VVSVMMMNEGKNLVSAAEDG  295 (387)
Q Consensus       276 v~~~~~s~~~~~l~s~~~dg  295 (387)
                      ++.+.|.+++.+++.+...+
T Consensus       168 v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  168 VTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             ceeeeecCCCEEEEEeCCCC
Confidence            99999999998777665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.27  E-value=0.001  Score=38.18  Aligned_cols=36  Identities=17%  Similarity=0.219  Sum_probs=31.1

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621          272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV  308 (387)
Q Consensus       272 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  308 (387)
                      ....|..++|+|...+||.+..+|.|.++.+ +++.+
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            3456999999999999999999999999999 55543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.25  E-value=0.11  Score=45.34  Aligned_cols=195  Identities=13%  Similarity=0.171  Sum_probs=90.9

Q ss_pred             CCCEEEEec-CCCcEEEEeCCCC----ceeEEccC---C----CCCeEEEEEcCCCCEEEEEeCC------CcEEEEeCC
Q 035621           94 DGSYLFTGG-LSGNVYAISVPKG----DILRSFSA---H----DKPVSCLKISPDGSLLISGGDD------GVIATVPIF  155 (387)
Q Consensus        94 ~~~~l~~~~-~dg~i~i~d~~~~----~~~~~~~~---~----~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~  155 (387)
                      +.++|+..+ ..+.|+++|+.+.    ++.+.++.   +    -.....+..-|+|+.++++-.|      |.+.++|-.
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345676666 6789999998632    34444432   1    1223445556788888875322      346666652


Q ss_pred             cccccCCCCCCCCccceEeeecc---CCCeEEEEEeeCCCCceEEEEeC--------------------CCcEEEEeCCC
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAH---NDSVTAITCCIGSFNSIIISCSM--------------------DCTCKFWRLLN  212 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~s~~~--------------------d~~i~iwd~~~  212 (387)
                                  +..........   ...-...-+.|..  +.++|...                    ..++.+||+.+
T Consensus       166 ------------tf~v~g~We~~~~~~~~gYDfw~qpr~--nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~  231 (461)
T PF05694_consen  166 ------------TFEVKGRWEKDRGPQPFGYDFWYQPRH--NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST  231 (461)
T ss_dssp             ------------T--EEEE--SB-TT------EEEETTT--TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred             ------------cccccceeccCCCCCCCCCCeEEcCCC--CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence                        22222222221   1122345555553  66666542                    35799999999


Q ss_pred             CcEEEEEecC---CceeEEEeC--CCCCeEEEEcc-CCcEEEEeccccccccccccceeEee----------------cc
Q 035621          213 GTHLSTVTFP---CAIMGLALD--PTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTL----------------AN  270 (387)
Q Consensus       213 ~~~~~~~~~~---~~v~~~~~~--~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~----------------~~  270 (387)
                      .+.++++...   ..+..+.|.  |+..+-++++. .++|..|--........   ..+..+                +.
T Consensus       232 r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a---~kVi~ip~~~v~~~~lp~ml~~~~  308 (461)
T PF05694_consen  232 RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA---EKVIDIPAKKVEGWILPEMLKPFG  308 (461)
T ss_dssp             TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE---EEEEEE--EE--SS---GGGGGG-
T ss_pred             CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee---eEEEECCCcccCcccccccccccc
Confidence            9999999865   245566554  55666666554 55566554422221111   111111                11


Q ss_pred             cccccEEEEEEecCCCEEEEEe-CCCcEEEEECCCc
Q 035621          271 RHDGVVVSVMMMNEGKNLVSAA-EDGSVYIWEIEKR  305 (387)
Q Consensus       271 ~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~  305 (387)
                      .-..-|+.+..|.|.++|..++ .+|.|+.||+...
T Consensus       309 ~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  309 AVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence            1134589999999999887665 6899999999874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.0012  Score=62.61  Aligned_cols=98  Identities=26%  Similarity=0.345  Sum_probs=73.7

Q ss_pred             eccccCCCCCeEEEEEccCCCc--ccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEE
Q 035621           55 SHISPTTGSGSVHLYNLWSSTP--LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLK  132 (387)
Q Consensus        55 ~~~~~~~~d~~v~vw~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~  132 (387)
                      ..++.|+..|.+...|....-.  .+.-....+|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.+-
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            3455678888888888755321  22233567999999999999999999999999999999999888877766655544


Q ss_pred             E---cCCCCEEEEEeCCCcEEEEeC
Q 035621          133 I---SPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus       133 ~---~~~~~~l~~~~~dg~i~iwd~  154 (387)
                      +   ..++..++++...|.  +|.+
T Consensus       180 ~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEeCCCcEEEEccCCCc--eEEE
Confidence            3   345567888888886  5654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=97.22  E-value=0.045  Score=51.15  Aligned_cols=159  Identities=11%  Similarity=0.122  Sum_probs=100.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCcccccCCCC----C--C-----CCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcE
Q 035621          137 GSLLISGGDDGVIATVPIFQLVDEHTDD----K--N-----PDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC  205 (387)
Q Consensus       137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~--~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i  205 (387)
                      .++++++. .+.|.+|++..........    .  .     .......... ....|+.|.+..-+....|+.|..||.|
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG~V  126 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDGDV  126 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEEEEEecCCeE
Confidence            45666654 5788899886543321100    0  0     0000011111 3345777776666667899999999999


Q ss_pred             EEEeCCC-------C-------------cEEEEEecCCceeEEEeC--CCCCeEEEEccCCcEEEEeccccccccccccc
Q 035621          206 KFWRLLN-------G-------------THLSTVTFPCAIMGLALD--PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ  263 (387)
Q Consensus       206 ~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  263 (387)
                      .+|.+++       .             ++...+..+...++++++  ...++||++++...|.+|-+.......... .
T Consensus       127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~-~  205 (717)
T PF08728_consen  127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV-P  205 (717)
T ss_pred             EEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc-c
Confidence            9997631       1             123344456789999999  888999999999999998776531111110 0


Q ss_pred             eeEeecccccccEEEEEEecCC---C---EEEEEeCCCcEEEEECC
Q 035621          264 ELVTLANRHDGVVVSVMMMNEG---K---NLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       264 ~~~~~~~~~~~~v~~~~~s~~~---~---~l~s~~~dg~i~iwd~~  303 (387)
                           ...|...|.+++|-++.   .   .+++++-.|.+.+|++.
T Consensus       206 -----s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  206 -----SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             -----ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence                 11256678899997643   2   78889999999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.0096  Score=52.35  Aligned_cols=143  Identities=13%  Similarity=0.217  Sum_probs=94.5

Q ss_pred             CCCEEE-EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-------EEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621           94 DGSYLF-TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-------LLISGGDDGVIATVPIFQLVDEHTDDK  165 (387)
Q Consensus        94 ~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~~~~~~~~  165 (387)
                      +.++|+ .+.....++-.|++.|+.+..++-+.. |+-+.+.|+.+       .-+.|-.|..|.-||.+-         
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv---------  413 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRV---------  413 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccc---------
Confidence            444444 444556799999999999999987665 77778888653       234566788899999852         


Q ss_pred             CCCccceEeeeccC----CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE-EEEe-cCCceeEEEeCCCCCeEEE
Q 035621          166 NPDDLMLQKFVAHN----DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL-STVT-FPCAIMGLALDPTETDFFA  239 (387)
Q Consensus       166 ~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~  239 (387)
                       .....+...+.|+    ..-.|.+-..+   .+++.||.+|.|++||- .+... ..++ ...+|..+..+.+|++|++
T Consensus       414 -~~~~kl~~~q~kqy~~k~nFsc~aTT~s---G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~  488 (644)
T KOG2395|consen  414 -QGKNKLAVVQSKQYSTKNNFSCFATTES---GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILA  488 (644)
T ss_pred             -cCcceeeeeeccccccccccceeeecCC---ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEE
Confidence             1111222222222    23344444433   58999999999999996 44333 3333 5789999999999999887


Q ss_pred             EccCCcEEEEecc
Q 035621          240 AGSDGLIYKGLLK  252 (387)
Q Consensus       240 ~~~dg~i~i~d~~  252 (387)
                      .+. ..+.+.+..
T Consensus       489 Tc~-tyLlLi~t~  500 (644)
T KOG2395|consen  489 TCK-TYLLLIDTL  500 (644)
T ss_pred             ecc-cEEEEEEEe
Confidence            764 455555543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.17  E-value=0.25  Score=47.39  Aligned_cols=292  Identities=10%  Similarity=0.068  Sum_probs=144.5

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEecc--CCCCCceeEEEcCc--cceeeeccccCCCCCeEEEEE-ccCCCcccccC---
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHFS--GSRSPRRGLTFAGK--PFIAASHISPTTGSGSVHLYN-LWSSTPLHNIP---   81 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~--~~~~~~~~~~~~~d~~v~vw~-~~~~~~~~~~~---   81 (387)
                      .++.++.++.+...++..+. ++...  .....|.|+.++|-  ....+..++.|..+..+.+.- ..+...+....   
T Consensus       501 qVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~  579 (1096)
T KOG1897|consen  501 QVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG  579 (1096)
T ss_pred             EEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC
Confidence            34444444445444544443 22222  23456889988872  222222334454444443332 22332222221   


Q ss_pred             --CCCCeeeEEeccCCCEEEEecCCCcEEEEeC--CCCceeEEcc--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621           82 --VPEPVAPLATTADGSYLFTGGLSGNVYAISV--PKGDILRSFS--AHDKPVSCLKISPDGSLLISGGDDGVIATVPIF  155 (387)
Q Consensus        82 --~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  155 (387)
                        .+..+.-.++-.|..+|.++..||.+..|.+  .+++.-..-+  -...++.--.|+..++.-+-+..|+-..+|.-+
T Consensus       580 ~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n  659 (1096)
T KOG1897|consen  580 EIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN  659 (1096)
T ss_pred             CccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC
Confidence              3455666677777899999999998876654  4444322221  124566656676666555555566665566441


Q ss_pred             cccccCCCCCCCCccceEeeeccCCCeEEE-EEeeCCCCceEEEEeCCCcEEEEeCCCCc--EEEEEecCCceeEEEeCC
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAI-TCCIGSFNSIIISCSMDCTCKFWRLLNGT--HLSTVTFPCAIMGLALDP  232 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~  232 (387)
                                   ++.+..- ..-..+..+ .|+.+..+..++++. .+.+++.-+..-+  .++++.....+..+++.+
T Consensus       660 -------------~kLv~sp-ls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~  724 (1096)
T KOG1897|consen  660 -------------GKLVYSP-LSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQE  724 (1096)
T ss_pred             -------------CcEEEec-cchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecc
Confidence                         1111110 000011111 122222234555554 3557776655433  234566677888889988


Q ss_pred             CCCeEEEEccCC--------------cEEEEeccccccccccccceeEeecccccccEEEEEEecC-CCEEEEEeC----
Q 035621          233 TETDFFAAGSDG--------------LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE-GKNLVSAAE----  293 (387)
Q Consensus       233 ~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~----  293 (387)
                      ....+.+.+...              .++++|-++......++...     ..-.-.+.++.|..| +.+++.|..    
T Consensus       725 ~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~-----~E~~~Si~s~~~~~d~~t~~vVGT~~v~P  799 (1096)
T KOG1897|consen  725 SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFER-----NETALSIISCKFTDDPNTYYVVGTGLVYP  799 (1096)
T ss_pred             cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccc-----cceeeeeeeeeecCCCceEEEEEEEeecc
Confidence            655555554321              24444444321111100000     001123556668777 677777742    


Q ss_pred             ------CCcEEEEECCCccEEEEe-ecccCCCceeE
Q 035621          294 ------DGSVYIWEIEKRQVVMVL-KNELAGSISEM  322 (387)
Q Consensus       294 ------dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~  322 (387)
                            .|.|.+|.+..++.+... +....|.|.++
T Consensus       800 de~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL  835 (1096)
T KOG1897|consen  800 DENEPVNGRIIVFEFEELNSLELVAETVVKGAVYAL  835 (1096)
T ss_pred             CCCCcccceEEEEEEecCCceeeeeeeeeccceeeh
Confidence                  488999998884333333 33345566555

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.13  E-value=0.0022  Score=36.83  Aligned_cols=37  Identities=14%  Similarity=0.127  Sum_probs=31.6

Q ss_pred             cCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce
Q 035621           80 IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI  117 (387)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  117 (387)
                      ...+..|.+++|+|...+||.+..+|.|.+|.+ +++.
T Consensus         8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen    8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            335567999999999999999999999999998 5544

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.016  Score=55.78  Aligned_cols=154  Identities=8%  Similarity=0.018  Sum_probs=94.2

Q ss_pred             CCeEEEEEcCCCCEEEE--EeCCCcEEEEeCCcccccCCCCCCCCccceEe---eeccCCCeEEEEEeeCCCCceEEEEe
Q 035621          126 KPVSCLKISPDGSLLIS--GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK---FVAHNDSVTAITCCIGSFNSIIISCS  200 (387)
Q Consensus       126 ~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~l~s~~  200 (387)
                      -++..+...+|+...++  .+.+-.|..||++.........    ..++..   ......-..++.|.|.. ....+.+.
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~----~~pl~~s~ts~ek~vf~~~~~wnP~v-p~n~av~l  175 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYET----TVPLKNSATSFEKPVFQLKNVWNPLV-PLNSAVDL  175 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhh----ccccccccchhccccccccccccCCc-cchhhhhc
Confidence            35666667777664443  3344478999997654332111    111111   11122234466777765 34566677


Q ss_pred             CCCcEEEEeCCCCc-EEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEE
Q 035621          201 MDCTCKFWRLLNGT-HLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV  279 (387)
Q Consensus       201 ~d~~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  279 (387)
                      .|+.|++..+.... ....+......++++|+|.|+.+++|-..|.+.-|............ .+     ......|.++
T Consensus       176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~-Pp-----~~e~yrvl~v  249 (1405)
T KOG3630|consen  176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPE-PP-----VEENYRVLSV  249 (1405)
T ss_pred             cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccC-CC-----cCCCcceeEE
Confidence            88999988775432 33445667789999999999999999999999888665432111111 11     1124679999


Q ss_pred             EEecCCCEEEE
Q 035621          280 MMMNEGKNLVS  290 (387)
Q Consensus       280 ~~s~~~~~l~s  290 (387)
                      +|-....++++
T Consensus       250 ~Wl~t~eflvv  260 (1405)
T KOG3630|consen  250 TWLSTQEFLVV  260 (1405)
T ss_pred             EEecceeEEEE
Confidence            99877666664

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.95  E-value=0.21  Score=46.57  Aligned_cols=218  Identities=16%  Similarity=0.152  Sum_probs=111.7

Q ss_pred             CeEEEEEccCCCcccccC--CCCCeeeEEeccCCCEEEEecCC-C-----cEEEEeCCCCceeE--EccCCCCCeEEEEE
Q 035621           64 GSVHLYNLWSSTPLHNIP--VPEPVAPLATTADGSYLFTGGLS-G-----NVYAISVPKGDILR--SFSAHDKPVSCLKI  133 (387)
Q Consensus        64 ~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-g-----~i~i~d~~~~~~~~--~~~~~~~~v~~~~~  133 (387)
                      ..+..+|..++.......  .+..-.+++.. ++...++||.+ |     .+..||....+-..  .+...........+
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l  379 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL  379 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence            467888887774433333  33333444444 45777888888 3     67888887765322  12222222222222


Q ss_pred             cCCCCEEEEEeCCCc-----EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC-----
Q 035621          134 SPDGSLLISGGDDGV-----IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC-----  203 (387)
Q Consensus       134 ~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~-----  203 (387)
                        +|.+.++|+.||.     +-.||...          .....+..+..   .........-. +.+.+.|+.++     
T Consensus       380 --~g~iYavGG~dg~~~l~svE~YDp~~----------~~W~~va~m~~---~r~~~gv~~~~-g~iYi~GG~~~~~~~l  443 (571)
T KOG4441|consen  380 --DGKLYAVGGFDGEKSLNSVECYDPVT----------NKWTPVAPMLT---RRSGHGVAVLG-GKLYIIGGGDGSSNCL  443 (571)
T ss_pred             --CCEEEEEeccccccccccEEEecCCC----------CcccccCCCCc---ceeeeEEEEEC-CEEEEEcCcCCCcccc
Confidence              6788999999865     55565522          11222221111   11122222222 47778887654     


Q ss_pred             -cEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCCc-----EEEEeccccccccccccceeEeeccccccc
Q 035621          204 -TCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDGL-----IYKGLLKYQSRQQMHKGQELVTLANRHDGV  275 (387)
Q Consensus       204 -~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  275 (387)
                       ++..||..+.+-...-+  ....-..++. -++...++|+.|+.     |..||..+.....       ..........
T Consensus       444 ~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~-------v~~m~~~rs~  515 (571)
T KOG4441|consen  444 NSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTM-------VAPMTSPRSA  515 (571)
T ss_pred             ceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeE-------cccCcccccc
Confidence             56788887765332222  1111112222 25667777777763     6667776643221       1111122222


Q ss_pred             EEEEEEecCCCEEEEEeCCC-----cEEEEECCCccEE
Q 035621          276 VVSVMMMNEGKNLVSAAEDG-----SVYIWEIEKRQVV  308 (387)
Q Consensus       276 v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~  308 (387)
                      +-...+  +++..+.|+.||     +|..||..+++-.
T Consensus       516 ~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~  551 (571)
T KOG4441|consen  516 VGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTWT  551 (571)
T ss_pred             ccEEEE--CCEEEEEecccCccccceeEEcCCCCCcee
Confidence            222222  567788888776     5667776665443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.87  E-value=0.0039  Score=48.66  Aligned_cols=102  Identities=16%  Similarity=0.203  Sum_probs=68.6

Q ss_pred             ccccCCCCCeEEEEEccCCCccc-ccC-CCCCeee-EEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCC-CCeEEE
Q 035621           56 HISPTTGSGSVHLYNLWSSTPLH-NIP-VPEPVAP-LATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHD-KPVSCL  131 (387)
Q Consensus        56 ~~~~~~~d~~v~vw~~~~~~~~~-~~~-~~~~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~  131 (387)
                      .++.|+.+|.|.+|+........ .+. ..+.+.+ +.-..++.+..++..+|.|+.|++.-.+.+.....|. .++..+
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~  151 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL  151 (238)
T ss_pred             eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence            45558899999999986322221 111 1233333 3333456688899999999999998888887777777 566666


Q ss_pred             EEcCCCCEEEEE--eCCCcEEEEeCCcc
Q 035621          132 KISPDGSLLISG--GDDGVIATVPIFQL  157 (387)
Q Consensus       132 ~~~~~~~~l~~~--~~dg~i~iwd~~~~  157 (387)
                      ..+..+..+..+  |.|..++.|++...
T Consensus       152 ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  152 IVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             EEecCCceEEeeccccchhhhhcchhhh
Confidence            666666677777  77777888877443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.75  E-value=0.35  Score=42.42  Aligned_cols=184  Identities=9%  Similarity=0.056  Sum_probs=90.4

Q ss_pred             cCCCCCeEEEEEccCC----CcccccCC--------CCCeeeEEeccCCCEEEEec------CCCcEEEEeCCCCceeEE
Q 035621           59 PTTGSGSVHLYNLWSS----TPLHNIPV--------PEPVAPLATTADGSYLFTGG------LSGNVYAISVPKGDILRS  120 (387)
Q Consensus        59 ~~~~d~~v~vw~~~~~----~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~  120 (387)
                      .+-..+.|.+.|+.+.    +..+.++.        -.....+..-|+|+.++++-      .-|.+.++|-++.+....
T Consensus        93 PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~  172 (461)
T PF05694_consen   93 PGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGR  172 (461)
T ss_dssp             EBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE
T ss_pred             eeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccce
Confidence            3667889999999743    22333331        02234455667888888752      224688888887777777


Q ss_pred             ccCCC---CCeEEEEEcCCCCEEEEEeC--------------------CCcEEEEeCCcccccCCCCCCCCccceEeeec
Q 035621          121 FSAHD---KPVSCLKISPDGSLLISGGD--------------------DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA  177 (387)
Q Consensus       121 ~~~~~---~~v~~~~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  177 (387)
                      .....   ..-..+-|.|..+.++|...                    ..++.+||+            ...+.++++.-
T Consensus       173 We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~------------~~r~~~Q~idL  240 (461)
T PF05694_consen  173 WEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW------------STRKLLQTIDL  240 (461)
T ss_dssp             --SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET------------TTTEEEEEEES
T ss_pred             eccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC------------CCCcEeeEEec
Confidence            65422   23456778888788887643                    257999999            56667776655


Q ss_pred             cCC--CeEEEEEeeCCCCce-EEEEeCCCcEEEEeC-CCCc----EEEEEec------------------CCceeEEEeC
Q 035621          178 HND--SVTAITCCIGSFNSI-IISCSMDCTCKFWRL-LNGT----HLSTVTF------------------PCAIMGLALD  231 (387)
Q Consensus       178 ~~~--~i~~~~~~~~~~~~~-l~s~~~d~~i~iwd~-~~~~----~~~~~~~------------------~~~v~~~~~~  231 (387)
                      -..  ....+.|..++...+ ++.+....+|..|-- ..++    .+..+..                  +.-|+.+.+|
T Consensus       241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS  320 (461)
T PF05694_consen  241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS  320 (461)
T ss_dssp             -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred             CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence            433  234566666654333 333334445544432 3332    1222210                  3457899999


Q ss_pred             CCCCeEEEEcc-CCcEEEEecccc
Q 035621          232 PTETDFFAAGS-DGLIYKGLLKYQ  254 (387)
Q Consensus       232 ~~~~~l~~~~~-dg~i~i~d~~~~  254 (387)
                      .|.++|.+++. .|.|+.||+...
T Consensus       321 lDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  321 LDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cCCCEEEEEcccCCcEEEEecCCC
Confidence            99999998876 899999999874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.75  E-value=0.37  Score=45.06  Aligned_cols=225  Identities=12%  Similarity=0.140  Sum_probs=114.0

Q ss_pred             CCcEEEeeCCCC------cEEEEeCCCCceeE--eccCCCCCceeEEEcCccceeeeccccCCCC------CeEEEEEcc
Q 035621            7 CNEVILTSSPEG------PITAYNPSSGAILA--HFSGSRSPRRGLTFAGKPFIAASHISPTTGS------GSVHLYNLW   72 (387)
Q Consensus         7 ~~~~l~~~~~dg------~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d------~~v~vw~~~   72 (387)
                      .+.+++.|+.++      .+..||..+++...  .+. ....-.+++..++..+..     |+.+      ..+..||..
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~~lYv~-----GG~~~~~~~l~~ve~YD~~  357 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNGKLYVV-----GGYDSGSDRLSSVERYDPR  357 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECCEEEEE-----ccccCCCcccceEEEecCC
Confidence            355777888773      58889988775433  222 222345556655443333     6666      467788887


Q ss_pred             CCCcccccCCCCCeeeEEe-ccCCCEEEEecCCC-----cEEEEeCCCCcee--EEccCCCCCeEEEEEcCCCCEEEEEe
Q 035621           73 SSTPLHNIPVPEPVAPLAT-TADGSYLFTGGLSG-----NVYAISVPKGDIL--RSFSAHDKPVSCLKISPDGSLLISGG  144 (387)
Q Consensus        73 ~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg-----~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~  144 (387)
                      +++-...-+-..+-..+.. .-+|...++||.||     ++..||..+.+--  ..+.......-...+  +|...++|+
T Consensus       358 ~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG  435 (571)
T KOG4441|consen  358 TNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGG  435 (571)
T ss_pred             CCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcC
Confidence            7764432222222222222 22677888898887     4778887665432  112111122222223  678888888


Q ss_pred             CCCc------EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCc-----EEEEeCCCC
Q 035621          145 DDGV------IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT-----CKFWRLLNG  213 (387)
Q Consensus       145 ~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~  213 (387)
                      .++.      +..||...          .....+..+........ ++.. +  +.+.+.|+.|+.     +..||..+.
T Consensus       436 ~~~~~~~l~sve~YDP~t----------~~W~~~~~M~~~R~~~g-~a~~-~--~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  436 GDGSSNCLNSVECYDPET----------NTWTLIAPMNTRRSGFG-VAVL-N--GKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             cCCCccccceEEEEcCCC----------CceeecCCcccccccce-EEEE-C--CEEEEECCccCCCccceEEEEcCCCC
Confidence            6654      45565522          11111111111111111 2222 2  377888887763     677887766


Q ss_pred             cEEEEEecCCceeEEEeC-CCCCeEEEEccCCc-----EEEEeccc
Q 035621          214 THLSTVTFPCAIMGLALD-PTETDFFAAGSDGL-----IYKGLLKY  253 (387)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~-----i~i~d~~~  253 (387)
                      +-...-............ -++...++|+.||.     |..||..+
T Consensus       502 ~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  502 QWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             ceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCC
Confidence            543332222111111111 24566677776653     45555444

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.74  E-value=0.2  Score=39.64  Aligned_cols=91  Identities=10%  Similarity=0.046  Sum_probs=58.7

Q ss_pred             eEEEEEeeCCCCceEEEEeCCCcEEEEe--CCCCc-----EEEEEec-----CCceeEEEeCCCCCeEEEEccCCcEEEE
Q 035621          182 VTAITCCIGSFNSIIISCSMDCTCKFWR--LLNGT-----HLSTVTF-----PCAIMGLALDPTETDFFAAGSDGLIYKG  249 (387)
Q Consensus       182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd--~~~~~-----~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~  249 (387)
                      -+.++|..+. ..+.++-+.+-+|.-||  ..+|.     .+..++.     +...-.++....|+..++.-+.++|...
T Consensus       160 sNgl~Wd~d~-K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  160 SNGLAWDSDA-KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CccccccccC-cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence            3567777553 45666667788887787  55553     2333321     1223456667788888888888999999


Q ss_pred             eccccccccccccceeEeecccccccEEEEEEe
Q 035621          250 LLKYQSRQQMHKGQELVTLANRHDGVVVSVMMM  282 (387)
Q Consensus       250 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  282 (387)
                      |..++.        .+.++. -....|+++||-
T Consensus       239 dp~tGK--------~L~eik-lPt~qitsccFg  262 (310)
T KOG4499|consen  239 DPTTGK--------ILLEIK-LPTPQITSCCFG  262 (310)
T ss_pred             CCCCCc--------EEEEEE-cCCCceEEEEec
Confidence            998843        333332 236789999996

>PHA02713 hypothetical protein; Provisional

Probab=96.73  E-value=0.13  Score=47.92  Aligned_cols=187  Identities=10%  Similarity=0.057  Sum_probs=88.0

Q ss_pred             CCcEEEeeCCC------CcEEEEeCCCCceeE--eccCCCCCceeEEEcCccceeeeccccCCCC-----CeEEEEEccC
Q 035621            7 CNEVILTSSPE------GPITAYNPSSGAILA--HFSGSRSPRRGLTFAGKPFIAASHISPTTGS-----GSVHLYNLWS   73 (387)
Q Consensus         7 ~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d-----~~v~vw~~~~   73 (387)
                      ++.+.+.|+.+      ..+..||+.+.....  .+..... -.+++...+..+..     |+.+     ..+..||..+
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~-~~~~~~~~g~IYvi-----GG~~~~~~~~sve~Ydp~~  376 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC-RFSLAVIDDTIYAI-----GGQNGTNVERTIECYTMGD  376 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh-ceeEEEECCEEEEE-----CCcCCCCCCceEEEEECCC
Confidence            55667777753      347788887664322  1111111 11233333333222     4433     3588899876


Q ss_pred             CCcccccCCCCCeee-EEeccCCCEEEEecCCC-----------------------cEEEEeCCCCcee--EEccCCCCC
Q 035621           74 STPLHNIPVPEPVAP-LATTADGSYLFTGGLSG-----------------------NVYAISVPKGDIL--RSFSAHDKP  127 (387)
Q Consensus        74 ~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~--~~~~~~~~~  127 (387)
                      .+-...-..+.+... .+..-+|+..+.|+.++                       .+..||..+.+-.  ..+......
T Consensus       377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~  456 (557)
T PHA02713        377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR  456 (557)
T ss_pred             CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc
Confidence            643322222221111 11123677777777542                       4777887765432  222111111


Q ss_pred             eEEEEEcCCCCEEEEEeCCC------cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC
Q 035621          128 VSCLKISPDGSLLISGGDDG------VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM  201 (387)
Q Consensus       128 v~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~  201 (387)
                      ...+.+  +++..+.|+.++      .+..||....         .....+..+.........+.+  +  +.+.+.|+.
T Consensus       457 ~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~---------~~W~~~~~m~~~r~~~~~~~~--~--~~iyv~Gg~  521 (557)
T PHA02713        457 PGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTY---------NGWELITTTESRLSALHTILH--D--NTIMMLHCY  521 (557)
T ss_pred             CcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCC---------CCeeEccccCcccccceeEEE--C--CEEEEEeee
Confidence            112222  567777777542      3566776320         011222222222222222222  2  478889988


Q ss_pred             CC--cEEEEeCCCCc
Q 035621          202 DC--TCKFWRLLNGT  214 (387)
Q Consensus       202 d~--~i~iwd~~~~~  214 (387)
                      ++  .+..||..+.+
T Consensus       522 ~~~~~~e~yd~~~~~  536 (557)
T PHA02713        522 ESYMLQDTFNVYTYE  536 (557)
T ss_pred             cceeehhhcCccccc
Confidence            88  66677766554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.66  E-value=0.3  Score=40.50  Aligned_cols=214  Identities=10%  Similarity=0.006  Sum_probs=121.5

Q ss_pred             CeeeEEeccCCCEEEEecCCCcEEEEeCC------CC-ceeEEccC-----CCCCeEEEEEcCCCC------------EE
Q 035621           85 PVAPLATTADGSYLFTGGLSGNVYAISVP------KG-DILRSFSA-----HDKPVSCLKISPDGS------------LL  140 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l  140 (387)
                      ....++++|.+.+-++....+...+||..      .. .++..+..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            35678999999888887788899999985      11 22333331     234677888875332            36


Q ss_pred             EEEeCCCcEEEEeCCcccccCCCCCCCCc--cceEeeec-cCCC-eEEEEEeeCCCCceEEEE-eCCCcEEEEeCCCCcE
Q 035621          141 ISGGDDGVIATVPIFQLVDEHTDDKNPDD--LMLQKFVA-HNDS-VTAITCCIGSFNSIIISC-SMDCTCKFWRLLNGTH  215 (387)
Q Consensus       141 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~-i~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~  215 (387)
                      +.+++||+|.-|.-.-.         ...  .....+.. .... -..+++.....+.+|+.+ -..++|.+||-.-.+.
T Consensus       104 if~tEdGTisaW~p~v~---------~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~  174 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALG---------TTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP  174 (336)
T ss_pred             EEEeCCceEEeecCcCC---------cccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc
Confidence            77899999999974110         110  01111211 1122 345666544333555544 3478899998542221


Q ss_pred             E--EEEecC-----------------CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEee-ccccccc
Q 035621          216 L--STVTFP-----------------CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL-ANRHDGV  275 (387)
Q Consensus       216 ~--~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~  275 (387)
                      .  ..+..+                 -.|+-..-.++.+.=+.|..-|.|-+||..-         ..+.++ ..+.-..
T Consensus       175 ~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G---------~l~~r~as~g~LNa  245 (336)
T TIGR03118       175 PLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG---------QLLRRVASSGRLNA  245 (336)
T ss_pred             cCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC---------cEEEEeccCCcccC
Confidence            1  011100                 0111112223333333444457788888764         233333 1233345


Q ss_pred             EEEEEEec------CCCEEEEEeCCCcEEEEECCCccEEEEeecccC
Q 035621          276 VVSVMMMN------EGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA  316 (387)
Q Consensus       276 v~~~~~s~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  316 (387)
                      .+.|+..|      .+.+|+---.||+|..||..+++.+..+.....
T Consensus       246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G  292 (336)
T TIGR03118       246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN  292 (336)
T ss_pred             CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence            67777755      456777666799999999999999988876533

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.51  E-value=0.16  Score=47.20  Aligned_cols=108  Identities=12%  Similarity=0.166  Sum_probs=69.1

Q ss_pred             ceEEEEeCCCcEEEEeCCCCcEEEEEec--CCceeEEEeC--CCCCeEEEEccCCcEEEEecccccccccccc-ceeEee
Q 035621          194 SIIISCSMDCTCKFWRLLNGTHLSTVTF--PCAIMGLALD--PTETDFFAAGSDGLIYKGLLKYQSRQQMHKG-QELVTL  268 (387)
Q Consensus       194 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~  268 (387)
                      ...+.-+...++.|||.+.+........  ...|..+.|.  |+++.+++.+-...|.++.-.........+. ..+...
T Consensus        42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i  121 (631)
T PF12234_consen   42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI  121 (631)
T ss_pred             cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence            4444444456799999998886655544  7889999886  6889999999999998885432111111111 111111


Q ss_pred             -ccccc-ccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          269 -ANRHD-GVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       269 -~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                       ...|+ .+|.+..|.++|.+++.+  ++.+.|+|-.
T Consensus       122 ~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  122 DISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             EeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence             12333 578999999998766654  3468888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.40  E-value=0.64  Score=43.41  Aligned_cols=176  Identities=10%  Similarity=0.129  Sum_probs=89.0

Q ss_pred             CCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE--c--cCCCCCeEEEEEcCC
Q 035621           62 GSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS--F--SAHDKPVSCLKISPD  136 (387)
Q Consensus        62 ~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~--~~~~~~v~~~~~~~~  136 (387)
                      .--.|+|++. +|..+..+. ...++-.+.|+.+.. |++...+|++++|++. |+.+..  .  ......|..+.|..+
T Consensus        62 a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~  138 (829)
T KOG2280|consen   62 ARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHN  138 (829)
T ss_pred             cceeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecC
Confidence            3456889987 566666555 334888999998875 4555689999999984 333322  1  122334555555556


Q ss_pred             CCEEEEEeCCCcEEEE-eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCC-ceEEEEe-CCCcEEEEeCCCC
Q 035621          137 GSLLISGGDDGVIATV-PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFN-SIIISCS-MDCTCKFWRLLNG  213 (387)
Q Consensus       137 ~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~-~d~~i~iwd~~~~  213 (387)
                      |-  +.-..+|.+.+- +.......          .....+....+-.|-...+.+.. ..++--. ..+ ..++-....
T Consensus       139 GV--avlt~~g~v~~i~~~~~~~~~----------~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~  205 (829)
T KOG2280|consen  139 GV--AVLTVSGQVILINGVEEPKLR----------KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES  205 (829)
T ss_pred             ce--EEEecCCcEEEEcCCCcchhh----------hCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc
Confidence            63  333344544433 22111000          00000111111112211111100 1111100 000 011111111


Q ss_pred             -cEEEEEec-CCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621          214 -THLSTVTF-PCAIMGLALDPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       214 -~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                       .....+.. ...+..+..||+.++|+.-...|.|.+.+...
T Consensus       206 ~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~  247 (829)
T KOG2280|consen  206 RVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDL  247 (829)
T ss_pred             cccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecch
Confidence             11122222 36788999999999999999999999988776

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.39  E-value=0.44  Score=39.26  Aligned_cols=175  Identities=15%  Similarity=0.097  Sum_probs=102.4

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc-CCCeEEEEEeeCCCCceEEEEe
Q 035621          122 SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH-NDSVTAITCCIGSFNSIIISCS  200 (387)
Q Consensus       122 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~  200 (387)
                      .+-...++++.|+|+.+.|++......-.++=.            ..+..+.+++-. -.....|.+..+  +++.++--
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt------------~~GdlirtiPL~g~~DpE~Ieyig~--n~fvi~dE  147 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELT------------KEGDLIRTIPLTGFSDPETIEYIGG--NQFVIVDE  147 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEe------------cCCceEEEecccccCChhHeEEecC--CEEEEEeh
Confidence            344556999999999998888877666555432            244444444321 112223444433  46777777


Q ss_pred             CCCcEEEEeCCCCcEEE-----EEe-----c-CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc-cceeEee
Q 035621          201 MDCTCKFWRLLNGTHLS-----TVT-----F-PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK-GQELVTL  268 (387)
Q Consensus       201 ~d~~i~iwd~~~~~~~~-----~~~-----~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~  268 (387)
                      .++.+.++.+.......     .++     . +.....++|.|.+..++++-+..-+.+|............ .......
T Consensus       148 R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~  227 (316)
T COG3204         148 RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD  227 (316)
T ss_pred             hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccc
Confidence            78888888776543221     222     2 4567889999999999999988888888776432111100 0000000


Q ss_pred             cccccccEEEEEEecC-CCEEEEEeCCCcEEEEECCCccEEEEe
Q 035621          269 ANRHDGVVVSVMMMNE-GKNLVSAAEDGSVYIWEIEKRQVVMVL  311 (387)
Q Consensus       269 ~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (387)
                      ..-.-..|.++.|.+. +..|+-+.+++.+.-.|.. |+.+..+
T Consensus       228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l  270 (316)
T COG3204         228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL  270 (316)
T ss_pred             cceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence            0001234777888864 5566667777777777755 4434443

>PHA03098 kelch-like protein; Provisional

Probab=96.35  E-value=0.65  Score=43.40  Aligned_cols=141  Identities=14%  Similarity=0.150  Sum_probs=65.4

Q ss_pred             CCcEEEeeCCCC------cEEEEeCCCCceeEec--cCCCCCceeEEEcCccceeeeccccCCCC-----CeEEEEEccC
Q 035621            7 CNEVILTSSPEG------PITAYNPSSGAILAHF--SGSRSPRRGLTFAGKPFIAASHISPTTGS-----GSVHLYNLWS   73 (387)
Q Consensus         7 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~d-----~~v~vw~~~~   73 (387)
                      ++.+++.|+.++      .+..||..+.+....-  ....... +++...+..+..     |+.+     ..+..||..+
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~~~~lyv~-----GG~~~~~~~~~v~~yd~~~  367 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVFNNRIYVI-----GGIYNSISLNTVESWKPGE  367 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEECCEEEEE-----eCCCCCEecceEEEEcCCC
Confidence            455667776542      5778888776553211  1111112 222223222222     3332     3577788776


Q ss_pred             CCcccccCCCCCee-eEEeccCCCEEEEecCC------CcEEEEeCCCCceeE--EccCCCCCeEEEEEcCCCCEEEEEe
Q 035621           74 STPLHNIPVPEPVA-PLATTADGSYLFTGGLS------GNVYAISVPKGDILR--SFSAHDKPVSCLKISPDGSLLISGG  144 (387)
Q Consensus        74 ~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~  144 (387)
                      ++-...-..+.+.. ..+..-+++..+.||.+      ..+..||+.+.+-..  .+....... +++. .++..++.|+
T Consensus       368 ~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG  445 (534)
T PHA03098        368 SKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGG  445 (534)
T ss_pred             CceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECC
Confidence            64332222111111 11122356667777632      358889987654322  111111111 2222 2566667776


Q ss_pred             CCC--------cEEEEeCC
Q 035621          145 DDG--------VIATVPIF  155 (387)
Q Consensus       145 ~dg--------~i~iwd~~  155 (387)
                      .+.        .+.+||..
T Consensus       446 ~~~~~~~~~~~~v~~yd~~  464 (534)
T PHA03098        446 ISYIDNIKVYNIVESYNPV  464 (534)
T ss_pred             ccCCCCCcccceEEEecCC
Confidence            432        37777773

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.30  E-value=0.66  Score=40.38  Aligned_cols=204  Identities=14%  Similarity=0.147  Sum_probs=114.7

Q ss_pred             cCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEc----CCCCE--EEEEe-CC---CcEEEEeCCcccccCC
Q 035621           93 ADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKIS----PDGSL--LISGG-DD---GVIATVPIFQLVDEHT  162 (387)
Q Consensus        93 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---g~i~iwd~~~~~~~~~  162 (387)
                      |...+++....++-+.+||+ .|+.+..+.  .+.++.+..-    -+++.  |+.++ .+   .+|++|.+..      
T Consensus        66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~------  136 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDP------  136 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEET------
T ss_pred             cccceEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecC------
Confidence            34456777777888999998 566666664  2344443321    13332  34443 32   4699998731      


Q ss_pred             CCCCCCccceEeee-------ccCCCeEEEEEeeCC-CC-ceEEEEeCCCcEEEEeCC---CC----cEEEEEecCCcee
Q 035621          163 DDKNPDDLMLQKFV-------AHNDSVTAITCCIGS-FN-SIIISCSMDCTCKFWRLL---NG----THLSTVTFPCAIM  226 (387)
Q Consensus       163 ~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~-~~-~~l~s~~~d~~i~iwd~~---~~----~~~~~~~~~~~v~  226 (387)
                           ....+..+.       .....+..+|+-.+. ++ -+++....+|.+..|.+.   .+    +.+++|.....+.
T Consensus       137 -----~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~E  211 (381)
T PF02333_consen  137 -----DTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPE  211 (381)
T ss_dssp             -----TTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EE
T ss_pred             -----CCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcce
Confidence                 111122221       122346777775432 23 466777889988888774   33    4678888888999


Q ss_pred             EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeec-ccccccEEEEEEec--CCC-EEE-EEeCCCcEEEEE
Q 035621          227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA-NRHDGVVVSVMMMN--EGK-NLV-SAAEDGSVYIWE  301 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~--~~~-~l~-s~~~dg~i~iwd  301 (387)
                      .|........|+.+-++.-|..|+........   ...+.... ......|-.|+.-.  +++ ||+ |.-.+++..||+
T Consensus       212 GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~---~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~  288 (381)
T PF02333_consen  212 GCVVDDETGRLYVGEEDVGIWRYDAEPEGGND---RTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD  288 (381)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEESSCCC-S-----EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred             EEEEecccCCEEEecCccEEEEEecCCCCCCc---ceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence            99999999999999999888888776532211   11111111 12345677777743  333 454 444677899999


Q ss_pred             CCC-ccEEEEeec
Q 035621          302 IEK-RQVVMVLKN  313 (387)
Q Consensus       302 ~~~-~~~~~~~~~  313 (387)
                      .+. ...+..|.-
T Consensus       289 r~~~~~~~g~f~i  301 (381)
T PF02333_consen  289 REGPNAYVGSFRI  301 (381)
T ss_dssp             SSTT--EEEEEEE
T ss_pred             cCCCCcccceEEe
Confidence            876 466666643

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.29  E-value=0.48  Score=38.77  Aligned_cols=164  Identities=16%  Similarity=0.071  Sum_probs=100.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCC--cEEEEeCCcccccCCCCCCCCccceEeeeccC-CCeEEEEEeeCCCCceEEEEeCCC
Q 035621          127 PVSCLKISPDGSLLISGGDDG--VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN-DSVTAITCCIGSFNSIIISCSMDC  203 (387)
Q Consensus       127 ~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~d~  203 (387)
                      -...+.|..++.++-+.+.-|  .|+.+|+            .+++......-.. ---..++...+   .+..-.=.++
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~------------~tg~~~~~~~l~~~~FgEGit~~~d---~l~qLTWk~~  110 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDL------------ETGKVLQSVPLPPRYFGEGITILGD---KLYQLTWKEG  110 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEET------------TTSSEEEEEE-TTT--EEEEEEETT---EEEEEESSSS
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEEC------------CCCcEEEEEECCccccceeEEEECC---EEEEEEecCC
Confidence            355788877888888888766  6888888            3444433332221 11223333322   4555555689


Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621          204 TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN  283 (387)
Q Consensus       204 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  283 (387)
                      ...+||..+.+.+.++..+..=..++  .+++.|+.+.....++.+|..+......    ..+......-..++.+.|- 
T Consensus       111 ~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~----i~V~~~g~pv~~LNELE~i-  183 (264)
T PF05096_consen  111 TGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT----IQVTDNGRPVSNLNELEYI-  183 (264)
T ss_dssp             EEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE----EE-EETTEE---EEEEEEE-
T ss_pred             eEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEE----EEEEECCEECCCcEeEEEE-
Confidence            99999999999999999877777777  5678888888888999999776332211    1111111122346667775 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          284 EGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       284 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      +|...|-.=....|..-|..+|+++..+.
T Consensus       184 ~G~IyANVW~td~I~~Idp~tG~V~~~iD  212 (264)
T PF05096_consen  184 NGKIYANVWQTDRIVRIDPETGKVVGWID  212 (264)
T ss_dssp             TTEEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred             cCEEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence            67666766666788899999999998774

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA03098 kelch-like protein; Provisional

Probab=96.12  E-value=0.55  Score=43.89  Aligned_cols=188  Identities=8%  Similarity=0.020  Sum_probs=87.3

Q ss_pred             cCCCEEEEecCCC------cEEEEeCCCCceeEE--ccCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCcccc
Q 035621           93 ADGSYLFTGGLSG------NVYAISVPKGDILRS--FSAHDKPVSCLKISPDGSLLISGGDDG-----VIATVPIFQLVD  159 (387)
Q Consensus        93 ~~~~~l~~~~~dg------~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~  159 (387)
                      .++..++.|+.++      .+..||..+.+-...  +.........+.+  +++.++.|+.++     .+..||....  
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~--  368 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGES--  368 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC--
Confidence            4556677776542      577888876654221  1111122222232  567777887653     3556666321  


Q ss_pred             cCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC------CcEEEEeCCCCcEEEEEecC--CceeEEEeC
Q 035621          160 EHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD------CTCKFWRLLNGTHLSTVTFP--CAIMGLALD  231 (387)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~--~~v~~~~~~  231 (387)
                              .......+...... .+++. .+  +.+++.|+.+      ..+..||..+.+-...-..+  ..-.+++ .
T Consensus       369 --------~W~~~~~lp~~r~~-~~~~~-~~--~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~  435 (534)
T PHA03098        369 --------KWREEPPLIFPRYN-PCVVN-VN--NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-Y  435 (534)
T ss_pred             --------ceeeCCCcCcCCcc-ceEEE-EC--CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-E
Confidence                    11111111111111 11222 12  3667777632      35788898765422211111  1111222 2


Q ss_pred             CCCCeEEEEccCC--------cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC-----CcEE
Q 035621          232 PTETDFFAAGSDG--------LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED-----GSVY  298 (387)
Q Consensus       232 ~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~  298 (387)
                      .++..++.|+.++        .+.+||..+..........       ........+.  .+++.++.||.+     ..|.
T Consensus       436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-------~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~  506 (534)
T PHA03098        436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN-------FPRINASLCI--FNNKIYVVGGDKYEYYINEIE  506 (534)
T ss_pred             ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC-------cccccceEEE--ECCEEEEEcCCcCCcccceeE
Confidence            3455666665421        3788887765433221110       0011111122  266777777754     4678


Q ss_pred             EEECCCcc
Q 035621          299 IWEIEKRQ  306 (387)
Q Consensus       299 iwd~~~~~  306 (387)
                      +||..+++
T Consensus       507 ~yd~~~~~  514 (534)
T PHA03098        507 VYDDKTNT  514 (534)
T ss_pred             EEeCCCCE
Confidence            88877664

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.05  E-value=0.56  Score=37.26  Aligned_cols=107  Identities=12%  Similarity=0.014  Sum_probs=66.9

Q ss_pred             ceeEEEeCCCCCeEEEE-ccCCcEEEEec--cccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEE
Q 035621          224 AIMGLALDPTETDFFAA-GSDGLIYKGLL--KYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIW  300 (387)
Q Consensus       224 ~v~~~~~~~~~~~l~~~-~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw  300 (387)
                      -.+.++|+.+.+.+... +.+-.|.-||.  .++..........+...........-.++...+|.+.++.-..++|...
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence            34678898887666554 45777867774  4433221111111111000111223445566788888888889999999


Q ss_pred             ECCCccEEEEeecccCCCceeEEEEecCCCc
Q 035621          301 EIEKRQVVMVLKNELAGSISEMVIATGIGGS  331 (387)
Q Consensus       301 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  331 (387)
                      |..+|+.+.+++-... .+++.+|....-+.
T Consensus       239 dp~tGK~L~eiklPt~-qitsccFgGkn~d~  268 (310)
T KOG4499|consen  239 DPTTGKILLEIKLPTP-QITSCCFGGKNLDI  268 (310)
T ss_pred             CCCCCcEEEEEEcCCC-ceEEEEecCCCccE
Confidence            9999999999987744 88888886544343

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.04  E-value=0.49  Score=42.91  Aligned_cols=152  Identities=13%  Similarity=0.053  Sum_probs=86.9

Q ss_pred             CCeeeEEeccCCCEEEEec--CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCcc
Q 035621           84 EPVAPLATTADGSYLFTGG--LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD----GSLLISGGDDGVIATVPIFQL  157 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~  157 (387)
                      .++..++|....+.+++.-  .+|.+++=|   .+.+..|    ..|..+.|.|-    ...+++......|.+|-+...
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            5788888875444444432  233333322   2233333    45889999984    335666667789999988311


Q ss_pred             cccCCCCCCCCccceEeeecc-CC--C--eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC--cEEEEEecCCceeEEEe
Q 035621          158 VDEHTDDKNPDDLMLQKFVAH-ND--S--VTAITCCIGSFNSIIISCSMDCTCKFWRLLNG--THLSTVTFPCAIMGLAL  230 (387)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~-~~--~--i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~v~~~~~  230 (387)
                      ..       ...+.+.....+ ..  +  -....|+|..  ..|+.-.....-.+++++..  +....+...+.|.|.+|
T Consensus        93 ~~-------e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACW  163 (671)
T PF15390_consen   93 TT-------ERNKLLMSQTCEIREPFPVLPQGCVWHPKK--AILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACW  163 (671)
T ss_pred             cc-------ccccceeeeeeeccCCcccCCCcccccCCC--ceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEe
Confidence            00       111122111111 11  1  1346788875  66666555544456666543  33444567889999999


Q ss_pred             CCCCCeEEEE-ccCCcEEEEec
Q 035621          231 DPTETDFFAA-GSDGLIYKGLL  251 (387)
Q Consensus       231 ~~~~~~l~~~-~~dg~i~i~d~  251 (387)
                      .+||+.|+++ +..=.-++||-
T Consensus       164 T~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  164 TKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             cCcCCEEEEEeCCeEEEEEecC
Confidence            9999888776 34445677875

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.03  E-value=0.43  Score=43.27  Aligned_cols=119  Identities=15%  Similarity=0.260  Sum_probs=74.9

Q ss_pred             ccCCCeEEEEEeeCCCC--ceEEEEeCCCcEEEEeCCC-----CcEEEEEe------cCCceeEEEeCCCCCeEEEEccC
Q 035621          177 AHNDSVTAITCCIGSFN--SIIISCSMDCTCKFWRLLN-----GTHLSTVT------FPCAIMGLALDPTETDFFAAGSD  243 (387)
Q Consensus       177 ~~~~~i~~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~-----~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d  243 (387)
                      +.-..|..+.|.|-...  ..+++......|.+|.+..     .+.+....      .+--...+.|+|....|++-...
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            34456888999886421  2355555678899998862     22222211      12234578999999998887776


Q ss_pred             CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe-CCCcEEEEECC
Q 035621          244 GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA-EDGSVYIWEIE  303 (387)
Q Consensus       244 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~  303 (387)
                      ..-.+++.....       ..+..-. ...+.|.|.+|.+||+.|+.+- ..=.-+|||-.
T Consensus       134 dvSV~~sV~~d~-------srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  134 DVSVLPSVHCDS-------SRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ceeEeeeeeeCC-------ceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            665666665522       1122212 4578899999999999887653 33346788844

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.99  E-value=0.011  Score=55.34  Aligned_cols=170  Identities=16%  Similarity=0.212  Sum_probs=96.5

Q ss_pred             ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc--CCCcccccC------CCCCeeeEEe---ccCCCEEEEec
Q 035621           34 FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW--SSTPLHNIP------VPEPVAPLAT---TADGSYLFTGG  102 (387)
Q Consensus        34 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~--~~~~~~~~~------~~~~v~~~~~---~~~~~~l~~~~  102 (387)
                      +++..+.+-.++|.....   ..+.  -.-|.+.||++.  .|+....+.      ....+.-+.|   -++..++..+-
T Consensus       128 ~kgf~G~v~dl~fah~~~---pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~  202 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKC---PKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL  202 (1283)
T ss_pred             HhcCCCCcccccccccCC---hHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc
Confidence            355666677777753110   0000  123678889874  333322221      1123344444   44667788888


Q ss_pred             CCCcEEEEeCCCCceeEEccCCCCCeEEEE-----------EcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccc
Q 035621          103 LSGNVYAISVPKGDILRSFSAHDKPVSCLK-----------ISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLM  171 (387)
Q Consensus       103 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  171 (387)
                      .++++++.+...... ..+.+|...+..++           .+|||+.++.++.||.++.|.+.-       .......+
T Consensus       203 ~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi-------~g~~~~rc  274 (1283)
T KOG1916|consen  203 KGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI-------TGKIVHRC  274 (1283)
T ss_pred             CCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee-------eccccHhh
Confidence            888998888754433 44556766655544           589999999999999999987621       11123445


Q ss_pred             eEeeeccC-CCeEEEEEeeCCC-------CceEEEEeC-CCcEEEEeCCCCcEE
Q 035621          172 LQKFVAHN-DSVTAITCCIGSF-------NSIIISCSM-DCTCKFWRLLNGTHL  216 (387)
Q Consensus       172 ~~~~~~~~-~~i~~~~~~~~~~-------~~~l~s~~~-d~~i~iwd~~~~~~~  216 (387)
                      +..++.|. .+-.|..++....       -.++++++. +..+++|.....+|+
T Consensus       275 lhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  275 LHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             hhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            56666666 3333332322210       023444443 567889987777776

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.97  E-value=0.087  Score=51.07  Aligned_cols=187  Identities=16%  Similarity=0.095  Sum_probs=103.9

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC----CccceEeeeccC-CCeEEEEEeeCCCCceEEEEeCCCc
Q 035621          130 CLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP----DDLMLQKFVAHN-DSVTAITCCIGSFNSIIISCSMDCT  204 (387)
Q Consensus       130 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~d~~  204 (387)
                      .++.++.-..+++++..+.+.++-..++..........    .......+..|. -++..+.+.++..-..++..+.+-.
T Consensus        46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~  125 (1405)
T KOG3630|consen   46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA  125 (1405)
T ss_pred             hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence            34555544556666666666666543322111110000    111112233332 3455555555542234445555557


Q ss_pred             EEEEeCCCCcEEEE------------EecCCceeEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeeccc
Q 035621          205 CKFWRLLNGTHLST------------VTFPCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANR  271 (387)
Q Consensus       205 i~iwd~~~~~~~~~------------~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  271 (387)
                      |..||+++......            +.......++.|+|.- ...++...|+.|.+..+.....        .... ..
T Consensus       126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~--------~v~s-~p  196 (1405)
T KOG3630|consen  126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ--------NVTS-FP  196 (1405)
T ss_pred             EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhh--------hhcc-cC
Confidence            89999986432221            1123456788888864 3455666788888877654211        1111 13


Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee---cccCCCceeEEEEe
Q 035621          272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK---NELAGSISEMVIAT  326 (387)
Q Consensus       272 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~  326 (387)
                      -....++++|+|.|+.++.|-..|++.-|... .+....+.   ......|.+|+|-.
T Consensus       197 ~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  197 VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEec
Confidence            45678999999999999999999999988754 33333332   23346777776543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.96  E-value=0.43  Score=44.43  Aligned_cols=118  Identities=12%  Similarity=0.119  Sum_probs=73.3

Q ss_pred             eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc-CCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEeCCcccccCC
Q 035621           86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS-AHDKPVSCLKIS--PDGSLLISGGDDGVIATVPIFQLVDEHT  162 (387)
Q Consensus        86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~  162 (387)
                      +.-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|.++.|.  |+++.+++.+....|.+|.-.+..... 
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~-  110 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN-  110 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc-
Confidence            3444445555555554455689999998887544332 346789999885  588999999999999998653321111 


Q ss_pred             CCCCCCccceEee--eccC-CCeEEEEEeeCCCCceEEEEeCCCcEEEEeC
Q 035621          163 DDKNPDDLMLQKF--VAHN-DSVTAITCCIGSFNSIIISCSMDCTCKFWRL  210 (387)
Q Consensus       163 ~~~~~~~~~~~~~--~~~~-~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~  210 (387)
                        ..+...+++.+  ..|+ .+|.+..|.+++  . ++.|+ ...+.|+|-
T Consensus       111 --~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G--~-LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  111 --KGPSWAPIRKIDISSHTPHPIGDSIWLKDG--T-LVVGS-GNQLFVFDK  155 (631)
T ss_pred             --CCcccceeEEEEeecCCCCCccceeEecCC--e-EEEEe-CCEEEEECC
Confidence              11223333333  3333 578899998874  4 44443 356888864

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.92  E-value=0.37  Score=42.78  Aligned_cols=145  Identities=7%  Similarity=0.099  Sum_probs=91.9

Q ss_pred             CCcEE-EeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccce---eeeccccCCCCCeEEEEEccC-CCcccccC
Q 035621            7 CNEVI-LTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFI---AASHISPTTGSGSVHLYNLWS-STPLHNIP   81 (387)
Q Consensus         7 ~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~d~~v~vw~~~~-~~~~~~~~   81 (387)
                      |..+| ..|+....++--|++.|+.+.++..|..-  -+.|.|...+   ....-+.|-.+..|.-.|..- |..+...+
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            44444 44666677888899999999999877764  5677774321   112222244555555445432 22222222


Q ss_pred             -----CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621           82 -----VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF  155 (387)
Q Consensus        82 -----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  155 (387)
                           ......+..-. ...++++++..|.|++||--.-+....+.+....|..+..+.+|+++++.+. ..+.+-|++
T Consensus       556 sKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         556 SKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             ehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence                 22233333333 3458999999999999996444444556677889999999999998887776 467777764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.89  E-value=0.79  Score=37.65  Aligned_cols=220  Identities=10%  Similarity=0.083  Sum_probs=119.3

Q ss_pred             eEEEEEccCCCcccccCCCC---CeeeEEeccCCCEEEEecCC-----CcEEEEeCCCC-ceeEEccCCCCCeEEEEEcC
Q 035621           65 SVHLYNLWSSTPLHNIPVPE---PVAPLATTADGSYLFTGGLS-----GNVYAISVPKG-DILRSFSAHDKPVSCLKISP  135 (387)
Q Consensus        65 ~v~vw~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~  135 (387)
                      ...++|.+..+....+...+   -.-.=.|+|||.+|+..-.|     |.|-+||.+.+ +.+..+..|.-....+.+.+
T Consensus        92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~  171 (366)
T COG3490          92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA  171 (366)
T ss_pred             eEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec
Confidence            35678888777665554221   22345799999999876433     68999998754 55667888888889999999


Q ss_pred             CCCEEEEEeCCCcEEEE-eCCcc-cccCCCC------CCCCccce--Eeee--ccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621          136 DGSLLISGGDDGVIATV-PIFQL-VDEHTDD------KNPDDLML--QKFV--AHNDSVTAITCCIGSFNSIIISCSMDC  203 (387)
Q Consensus       136 ~~~~l~~~~~dg~i~iw-d~~~~-~~~~~~~------~~~~~~~~--~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~d~  203 (387)
                      ||+.++.+.  |-|..- |.... .+...-+      ...++..+  .++.  .+.-.|..++.-+++  ..++.+-..|
T Consensus       172 DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg--tvwfgcQy~G  247 (366)
T COG3490         172 DGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG--TVWFGCQYRG  247 (366)
T ss_pred             CCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC--cEEEEEEeeC
Confidence            999888764  445444 22110 0000000      00011111  1111  233455556554442  4443332222


Q ss_pred             c-----EEEEeCCCCcEEEEEec--------CCceeEEEeCCCCCeEEEEccC-CcEEEEeccccccccccccceeEeec
Q 035621          204 T-----CKFWRLLNGTHLSTVTF--------PCAIMGLALDPTETDFFAAGSD-GLIYKGLLKYQSRQQMHKGQELVTLA  269 (387)
Q Consensus       204 ~-----i~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~  269 (387)
                      .     -.+=-...++++.-+..        ...|-+++.+.+...++..+-. +...+||..++.......        
T Consensus       248 ~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~--------  319 (366)
T COG3490         248 PRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA--------  319 (366)
T ss_pred             CCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc--------
Confidence            1     11111223444444432        3467788988877777777664 456789998854332211        


Q ss_pred             ccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          270 NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       270 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                         -.....++  +...-++..+.+|.+.++.
T Consensus       320 ---l~daaGva--~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         320 ---LPDAAGVA--AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             ---ccccccce--eccCceEEecCCceEEecc
Confidence               01111222  2333455556778888774

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.87  E-value=1.6  Score=40.97  Aligned_cols=56  Identities=14%  Similarity=0.188  Sum_probs=46.4

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621          273 DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       273 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  328 (387)
                      .+.+..+..||+.++|+-=..+|.|.+-+.+..+.+..+.-....++..+++....
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence            35678899999999999999999999999999999988885555567778776544

>PHA02790 Kelch-like protein; Provisional

Probab=95.60  E-value=1.7  Score=39.93  Aligned_cols=184  Identities=9%  Similarity=0.007  Sum_probs=82.9

Q ss_pred             CCCEEEEecCCC-----cEEEEeCCCCceeE--EccCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEeCCcccccCCCC
Q 035621           94 DGSYLFTGGLSG-----NVYAISVPKGDILR--SFSAHDKPVSCLKISPDGSLLISGGDDG--VIATVPIFQLVDEHTDD  164 (387)
Q Consensus        94 ~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~  164 (387)
                      ++..+++|+.++     .+..||..+.+-..  .+.........+.  -++...+.|+.++  .+..||....       
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n-------  341 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDA-------  341 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCC-------
Confidence            455667776543     46778887654322  1211111122222  2677777777543  4666765221       


Q ss_pred             CCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC---cEEEEeCCCCcEEEEEec--CCceeEEEeCCCCCeEEE
Q 035621          165 KNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC---TCKFWRLLNGTHLSTVTF--PCAIMGLALDPTETDFFA  239 (387)
Q Consensus       165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~  239 (387)
                         ....+..+....... +++. -+  +.+.+.|+.++   .+..||.++.+-...-..  +..-.+++ .-+++..+.
T Consensus       342 ---~W~~~~~l~~~r~~~-~~~~-~~--g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~  413 (480)
T PHA02790        342 ---AWVNMPSLLKPRCNP-AVAS-IN--NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLV  413 (480)
T ss_pred             ---eEEECCCCCCCCccc-EEEE-EC--CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEE
Confidence               111111111111111 1221 22  36777777553   467788766532221111  11111121 234555555


Q ss_pred             EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC-----CcEEEEECCCcc
Q 035621          240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED-----GSVYIWEIEKRQ  306 (387)
Q Consensus       240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~  306 (387)
                      |   |.+.+||..+........       ........ +++ .-+++..+.||.+     .++..||..+++
T Consensus       414 G---G~~e~ydp~~~~W~~~~~-------m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        414 G---RNAEFYCESSNTWTLIDD-------PIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             C---CceEEecCCCCcEeEcCC-------CCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            5   346778876543322111       10111111 222 2367788888764     346677766554

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.60  E-value=1.2  Score=37.68  Aligned_cols=153  Identities=12%  Similarity=0.132  Sum_probs=75.6

Q ss_pred             CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621           84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      ..+..+..+++|++++++.......-||.-...-...-+.-...|..|.|.|++.+.+.+ ..|.|+.=+.....+.-  
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w--  221 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW--  221 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE--
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc--
Confidence            567888889999999988766666677753322222222346789999999998765544 88888876621100000  


Q ss_pred             CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceeEEEeCCCCCeEEE
Q 035621          164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIMGLALDPTETDFFA  239 (387)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~  239 (387)
                           .+.........-.+..+++.++.  ...++|+ .|.+ +.....|+.-...+    .+.....+.|.++. .-++
T Consensus       222 -----~~~~~~~~~~~~~~ld~a~~~~~--~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~gf~  291 (302)
T PF14870_consen  222 -----SEPIIPIKTNGYGILDLAYRPPN--EIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-KGFV  291 (302)
T ss_dssp             --------B-TTSS--S-EEEEEESSSS---EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT-EEEE
T ss_pred             -----ccccCCcccCceeeEEEEecCCC--CEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCC-ceEE
Confidence                 00011111222346778887653  5555554 5544 44555666555544    35668888887654 4445


Q ss_pred             EccCCcEEEE
Q 035621          240 AGSDGLIYKG  249 (387)
Q Consensus       240 ~~~dg~i~i~  249 (387)
                      -+.+|.+.-|
T Consensus       292 lG~~G~ll~~  301 (302)
T PF14870_consen  292 LGQDGVLLRY  301 (302)
T ss_dssp             E-STTEEEEE
T ss_pred             ECCCcEEEEe
Confidence            5567766544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.41  E-value=0.0063  Score=56.89  Aligned_cols=136  Identities=15%  Similarity=0.153  Sum_probs=77.6

Q ss_pred             CcEEEEeCC--CCceeEec-----cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeE-
Q 035621           18 GPITAYNPS--SGAILAHF-----SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPL-   89 (387)
Q Consensus        18 g~i~iwd~~--~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~-   89 (387)
                      |.+.||++.  .|+....+     ......+.-+.|.|-- ....++..+..++.+++.++++...-....|...+..+ 
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~-~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIA-VNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccc-cccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHH
Confidence            667888874  45443333     2233345556666510 01123334667888888877654332222244333332 


Q ss_pred             ----------EeccCCCEEEEecCCCcEEEEeC-----CCCceeEEccCCC-CCeEEEEEcCCCC---------EEEEEe
Q 035621           90 ----------ATTADGSYLFTGGLSGNVYAISV-----PKGDILRSFSAHD-KPVSCLKISPDGS---------LLISGG  144 (387)
Q Consensus        90 ----------~~~~~~~~l~~~~~dg~i~i~d~-----~~~~~~~~~~~~~-~~v~~~~~~~~~~---------~l~~~~  144 (387)
                                ..+|||..++.+..||.++.|.+     ...++.+..+.|. .+-.|.-++.+..         ++++++
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt  311 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT  311 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc
Confidence                      36899999999999998888765     3345666777777 3444444543321         334433


Q ss_pred             -CCCcEEEEeC
Q 035621          145 -DDGVIATVPI  154 (387)
Q Consensus       145 -~dg~i~iwd~  154 (387)
                       .+..+++|..
T Consensus       312 d~nre~k~w~~  322 (1283)
T KOG1916|consen  312 DVNREEKFWAE  322 (1283)
T ss_pred             cCCcceeEeec
Confidence             4566888876

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.31  E-value=0.52  Score=33.94  Aligned_cols=115  Identities=11%  Similarity=0.144  Sum_probs=71.1

Q ss_pred             ccCCCcEEEeeCCCCcEEEEeCCCCc--------eeEeccCCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccCC
Q 035621            4 HLPCNEVILTSSPEGPITAYNPSSGA--------ILAHFSGSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSS   74 (387)
Q Consensus         4 ~s~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~   74 (387)
                      |.....-|+.++.-|+|.|+++....        .+..+. -...|++++-.+= ..-....|+ -+....+..||+..+
T Consensus         6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~Ll-iGt~t~llaYDV~~N   83 (136)
T PF14781_consen    6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLL-IGTQTSLLAYDVENN   83 (136)
T ss_pred             eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEE-EeccceEEEEEcccC
Confidence            45555678888889999999976332        233332 3445677654430 000011122 345667999999998


Q ss_pred             CcccccCCCCCeeeEEecc----CCCEEEEecCCCcEEEEeCCCCceeEEc
Q 035621           75 TPLHNIPVPEPVAPLATTA----DGSYLFTGGLSGNVYAISVPKGDILRSF  121 (387)
Q Consensus        75 ~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~  121 (387)
                      ..+.....++.+.++.+-.    +..++++ +.+..|.-||.+..+...+.
T Consensus        84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             chhhhhhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEEEEEe
Confidence            8887777788888888743    2334444 45677888887655554443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.31  E-value=1.7  Score=37.62  Aligned_cols=244  Identities=16%  Similarity=0.169  Sum_probs=114.7

Q ss_pred             ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc---cccc-----CCCCCeeeEEeccC---CCEEEEecCC-----
Q 035621           41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP---LHNI-----PVPEPVAPLATTAD---GSYLFTGGLS-----  104 (387)
Q Consensus        41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~---~~~~-----~~~~~v~~~~~~~~---~~~l~~~~~d-----  104 (387)
                      .++|+|.|++.+..     +...|.|++++ ..+..   +..+     ........++++|+   ..+|++....     
T Consensus         4 P~~~a~~pdG~l~v-----~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~   77 (331)
T PF07995_consen    4 PRSMAFLPDGRLLV-----AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG   77 (331)
T ss_dssp             EEEEEEETTSCEEE-----EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred             ceEEEEeCCCcEEE-----EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence            57899999765444     35689999998 33332   2222     13356889999994   3444443321     


Q ss_pred             ----CcEEEEeCCCC-------c-eeEEccC---CCCCeEEEEEcCCCCEEEEEeCCCc-------------EEEEeCCc
Q 035621          105 ----GNVYAISVPKG-------D-ILRSFSA---HDKPVSCLKISPDGSLLISGGDDGV-------------IATVPIFQ  156 (387)
Q Consensus       105 ----g~i~i~d~~~~-------~-~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~iwd~~~  156 (387)
                          ..|.-|....+       + .+..+..   ....-..|+|.|||.+.++.+..+.             |.-.+...
T Consensus        78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG  157 (331)
T PF07995_consen   78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG  157 (331)
T ss_dssp             SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred             CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC
Confidence                13444444333       1 1112222   2344567999999977666655433             21112110


Q ss_pred             ccccCCCCCC--CCccceEeeeccCCCeEEEEEeeCCCCceEEEE-eCCCcEEEEeCCCC--------------------
Q 035621          157 LVDEHTDDKN--PDDLMLQKFVAHNDSVTAITCCIGSFNSIIISC-SMDCTCKFWRLLNG--------------------  213 (387)
Q Consensus       157 ~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~--------------------  213 (387)
                      ..........  .....+ --.++. ....++|.|.. +.++++= +.++.=.|.-+..+                    
T Consensus       158 ~~p~dnP~~~~~~~~~~i-~A~GlR-N~~~~~~d~~t-g~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~  234 (331)
T PF07995_consen  158 SIPADNPFVGDDGADSEI-YAYGLR-NPFGLAFDPNT-GRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG  234 (331)
T ss_dssp             SB-TTSTTTTSTTSTTTE-EEE--S-EEEEEEEETTT-TEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred             cCCCCCccccCCCceEEE-EEeCCC-ccccEEEECCC-CcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence            0000000000  000011 111222 23467887762 3444332 22222122112111                    


Q ss_pred             ---------cEEEEEecCCceeEEEeCCC-------CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEE
Q 035621          214 ---------THLSTVTFPCAIMGLALDPT-------ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV  277 (387)
Q Consensus       214 ---------~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  277 (387)
                               .+...+.++..+..+.|.+.       |.++++.-..+.|....+......     .....+......++.
T Consensus       235 ~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~r~~  309 (331)
T PF07995_consen  235 DAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSV-----TEEEEFLGGFGGRPR  309 (331)
T ss_dssp             TGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEE-----EEEEEECTTSSS-EE
T ss_pred             cccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCc-----cceEEccccCCCCce
Confidence                     12333444556777777643       345555555678887777643221     112222334555899


Q ss_pred             EEEEecCCCEEEEEeCCCcEE
Q 035621          278 SVMMMNEGKNLVSAAEDGSVY  298 (387)
Q Consensus       278 ~~~~s~~~~~l~s~~~dg~i~  298 (387)
                      .+++.|||.++++-+.+|.|+
T Consensus       310 ~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  310 DVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEETTSEEEEEE-TTTTEE
T ss_pred             EEEEcCCCeEEEEECCCCeEe
Confidence            999999999888888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.28  E-value=1.9  Score=38.00  Aligned_cols=150  Identities=13%  Similarity=0.114  Sum_probs=76.9

Q ss_pred             CCeeeEEeccCCCEEEEec-----------CCC-cEEEEeCCC--Cc--eeEEccCCCCCeEEEEEcCCCCEEEEEeCCC
Q 035621           84 EPVAPLATTADGSYLFTGG-----------LSG-NVYAISVPK--GD--ILRSFSAHDKPVSCLKISPDGSLLISGGDDG  147 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  147 (387)
                      .....++|.++|+++++-.           ..+ .|.+++-.+  ++  ....+.........+++.+++  |++++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            4566788999988776642           223 677776433  22  223343334456889999888  44444443


Q ss_pred             cEEEEeCCcccccCCCCCCCCccceEeeec----cCCCeEEEEEeeCCCCceEEEEeCC-------------------Cc
Q 035621          148 VIATVPIFQLVDEHTDDKNPDDLMLQKFVA----HNDSVTAITCCIGSFNSIIISCSMD-------------------CT  204 (387)
Q Consensus       148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~s~~~d-------------------~~  204 (387)
                      ..++.|........    ......+..+..    +......+++.|++  .+.++-+..                   |.
T Consensus        92 i~~~~d~~gdg~ad----~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG--~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~  165 (367)
T TIGR02604        92 ILFLRDKDGDDKAD----GEREVLLSGFGGQINNHHHSLNSLAWGPDG--WLYFNHGNTLASKVTRPGTSDESRQGLGGG  165 (367)
T ss_pred             EEEEeCCCCCCCCC----CccEEEEEccCCCCCcccccccCceECCCC--CEEEecccCCCceeccCCCccCcccccCce
Confidence            33333442100000    001111122222    23446678888874  555544311                   33


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEcc
Q 035621          205 CKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       205 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~  242 (387)
                      |.-+|...++ +..+. .......++|+|+|+.+++-..
T Consensus       166 i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       166 LFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             EEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEccC
Confidence            4455544433 22333 2344678999999988766443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.23  E-value=0.8  Score=35.74  Aligned_cols=102  Identities=14%  Similarity=0.035  Sum_probs=62.5

Q ss_pred             CCcEEEeeCCC--CcEEEEeCCCCceeEeccCCCCCce--eEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC
Q 035621            7 CNEVILTSSPE--GPITAYNPSSGAILAHFSGSRSPRR--GLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV   82 (387)
Q Consensus         7 ~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~   82 (387)
                      +|.++.+.+.-  ..|++||+.+|+.+.+-+-....+.  .+.-..+..+..     .-.+|....+|..+-+++..+..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~L-----Tw~egvaf~~d~~t~~~lg~~~y  129 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQL-----TWKEGVAFKYDADTLEELGRFSY  129 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEE-----EeccceeEEEChHHhhhhccccc
Confidence            34556655533  3599999999988765542211111  122223333332     23678888899988888888887


Q ss_pred             CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC
Q 035621           83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPKG  115 (387)
Q Consensus        83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  115 (387)
                      ++.=..++.  |++.|+.+.....++.-|.++-
T Consensus       130 ~GeGWgLt~--d~~~LimsdGsatL~frdP~tf  160 (262)
T COG3823         130 EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTF  160 (262)
T ss_pred             CCcceeeec--CCcceEeeCCceEEEecCHHHh
Confidence            766665554  5555777666667777776543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.18  E-value=1.6  Score=36.44  Aligned_cols=218  Identities=16%  Similarity=0.205  Sum_probs=122.1

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCC------CC-ceeEeccC-----CCCCceeEEEcCccce--------eeeccccCC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPS------SG-AILAHFSG-----SRSPRRGLTFAGKPFI--------AASHISPTT   61 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~--------~~~~~~~~~   61 (387)
                      |+++|.+.+-++....+...+||..      .. .++.++..     .....+.+.|+....+        ....++.++
T Consensus        28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t  107 (336)
T TIGR03118        28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT  107 (336)
T ss_pred             eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence            5789988888887788899999986      12 22334432     2335788888853322        223355688


Q ss_pred             CCCeEEEEEccCCCc-----ccccC--CCCC-eeeEEecc--CCCEEEEec-CCCcEEEEeCCCCceeE--Ecc-----C
Q 035621           62 GSGSVHLYNLWSSTP-----LHNIP--VPEP-VAPLATTA--DGSYLFTGG-LSGNVYAISVPKGDILR--SFS-----A  123 (387)
Q Consensus        62 ~d~~v~vw~~~~~~~-----~~~~~--~~~~-v~~~~~~~--~~~~l~~~~-~dg~i~i~d~~~~~~~~--~~~-----~  123 (387)
                      .||+|.-|...-+..     ...+.  .... -..+++..  .+.+|+.+. .+++|.+||-.-.+...  .+.     .
T Consensus       108 EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPa  187 (336)
T TIGR03118       108 EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPA  187 (336)
T ss_pred             CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCC
Confidence            999999998533222     11122  1122 33455543  356666654 67889999853222110  011     0


Q ss_pred             CCCC-----------eEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee--ccCCCeEEEEEeeC
Q 035621          124 HDKP-----------VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSVTAITCCIG  190 (387)
Q Consensus       124 ~~~~-----------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~  190 (387)
                      .-.+           |+-..-.++.+.=+.+..-|.|-+||+             .+..++++.  +.-..-+.|+..|.
T Consensus       188 gyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-------------~G~l~~r~as~g~LNaPWG~a~APa  254 (336)
T TIGR03118       188 GYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-------------NGQLLRRVASSGRLNAPWGLAIAPE  254 (336)
T ss_pred             CCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-------------CCcEEEEeccCCcccCCceeeeChh
Confidence            0000           111111222222233344478888887             455555552  22234456666554


Q ss_pred             CC----CceEEEEeCCCcEEEEeCCCCcEEEEEecC-------CceeEEEeCC
Q 035621          191 SF----NSIIISCSMDCTCKFWRLLNGTHLSTVTFP-------CAIMGLALDP  232 (387)
Q Consensus       191 ~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~  232 (387)
                      ..    +.+|+---.||+|..||..+++.+-.+...       ...+.++|..
T Consensus       255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       255 SFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             hhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            32    466776667999999999999887777622       3456777764

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.05  E-value=1.9  Score=36.58  Aligned_cols=227  Identities=15%  Similarity=0.185  Sum_probs=101.6

Q ss_pred             ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC----CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc
Q 035621           41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP----VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD  116 (387)
Q Consensus        41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  116 (387)
                      ..++.|..+..+.      ++..+ +.+...+.++.-..+.    .+.....+....++..++++ ..|.|..=. ..|+
T Consensus        64 l~~I~f~~~~g~i------vG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T~-DgG~  134 (302)
T PF14870_consen   64 LNSISFDGNEGWI------VGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRTT-DGGK  134 (302)
T ss_dssp             EEEEEEETTEEEE------EEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEES-STTS
T ss_pred             EEEEEecCCceEE------EcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEeC-CCCC
Confidence            5567776543222      22333 3334444444433332    23334444444444444443 445443322 2332


Q ss_pred             e-eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCce
Q 035621          117 I-LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI  195 (387)
Q Consensus       117 ~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  195 (387)
                      . ......-.+.+..+.-+++|++++++..-....-||--+            ..-...-..-...|..+.|.|++  .+
T Consensus       135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~------------~~w~~~~r~~~~riq~~gf~~~~--~l  200 (302)
T PF14870_consen  135 TWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ------------TTWQPHNRNSSRRIQSMGFSPDG--NL  200 (302)
T ss_dssp             SEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-------------SS-EEEE--SSS-EEEEEE-TTS---E
T ss_pred             CeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCC------------ccceEEccCccceehhceecCCC--CE
Confidence            2 222334457788999999999888887766666776521            11111112245789999999884  55


Q ss_pred             EEEEeCCCcEEEEeC-CCCcEEEE--Ee---cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeec
Q 035621          196 IISCSMDCTCKFWRL-LNGTHLST--VT---FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA  269 (387)
Q Consensus       196 l~s~~~d~~i~iwd~-~~~~~~~~--~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  269 (387)
                      .+. ...|.|++=+. ...+....  ..   ....+..++|.+++...++|+. |.+.+ ....+....      .....
T Consensus       201 w~~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~DgGktW~------~~~~~  271 (302)
T PF14870_consen  201 WML-ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDGGKTWQ------KDRVG  271 (302)
T ss_dssp             EEE-ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESSTTSS-E------E-GGG
T ss_pred             EEE-eCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCCCccce------ECccc
Confidence            443 47888888772 22222111  11   1234789999998776666554 44432 222221111      11111


Q ss_pred             ccccccEEEEEEecCCCEEEEEeCCCcEEEE
Q 035621          270 NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIW  300 (387)
Q Consensus       270 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw  300 (387)
                      ..-......+.|.++.+-++.| .+|.|.-|
T Consensus       272 ~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  272 ENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             TTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             cCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence            1234557888887665556655 78877655

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.05  E-value=1.1  Score=42.44  Aligned_cols=156  Identities=12%  Similarity=0.100  Sum_probs=92.6

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeE------Ecc----------------CCCCCeEEEEEcC--CCCEEEEEeCCCcEE
Q 035621           95 GSYLFTGGLSGNVYAISVPKGDILR------SFS----------------AHDKPVSCLKISP--DGSLLISGGDDGVIA  150 (387)
Q Consensus        95 ~~~l~~~~~dg~i~i~d~~~~~~~~------~~~----------------~~~~~v~~~~~~~--~~~~l~~~~~dg~i~  150 (387)
                      .++++++. .+.|.||++.......      .+.                .....|+.|....  +...|+.+..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            56777764 6789999875332110      110                0112345554433  445899999999999


Q ss_pred             EEeCCcccccCCCC----C----CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC--c--EEEE
Q 035621          151 TVPIFQLVDEHTDD----K----NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG--T--HLST  218 (387)
Q Consensus       151 iwd~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~--~~~~  218 (387)
                      +|.+..........    .    ...-.+...+. -....++++++.....+++|.++....|.||-+...  +  ....
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            99875432111000    0    01111222232 344788999982222478888888888888765432  1  1113


Q ss_pred             EecCCceeEEEeCCCC---C---eEEEEccCCcEEEEecc
Q 035621          219 VTFPCAIMGLALDPTE---T---DFFAAGSDGLIYKGLLK  252 (387)
Q Consensus       219 ~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~i~d~~  252 (387)
                      ..+...|.+++|-++.   .   .+++++-.|.+.+|++.
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            3466788899998754   2   67777889999999884

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.02  E-value=2.1  Score=37.08  Aligned_cols=241  Identities=18%  Similarity=0.184  Sum_probs=115.8

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCce---eEec----cCCCCCceeEEEcCc-----cceeeecc---ccCCCCCeE
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAI---LAHF----SGSRSPRRGLTFAGK-----PFIAASHI---SPTTGSGSV   66 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~-----~~~~~~~~---~~~~~d~~v   66 (387)
                      |+|.|||+++++-- .|.|++++ .++..   +..+    .........++++|+     ..+....-   ..+.....|
T Consensus         7 ~a~~pdG~l~v~e~-~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v   84 (331)
T PF07995_consen    7 MAFLPDGRLLVAER-SGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRV   84 (331)
T ss_dssp             EEEETTSCEEEEET-TTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEE
T ss_pred             EEEeCCCcEEEEeC-CceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceee
Confidence            68999998877654 89999999 44443   2222    223445788999993     22222110   001112344


Q ss_pred             EEEEccCC-------Ccc-cccC----CCCCeeeEEeccCCCEEEEecCCCc-------------EEEEeCCCCce----
Q 035621           67 HLYNLWSS-------TPL-HNIP----VPEPVAPLATTADGSYLFTGGLSGN-------------VYAISVPKGDI----  117 (387)
Q Consensus        67 ~vw~~~~~-------~~~-~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~~----  117 (387)
                      .-|....+       +.+ ....    ....-..|.|.|||.+.++.+..+.             |.-.+. +++.    
T Consensus        85 ~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~-dG~~p~dn  163 (331)
T PF07995_consen   85 VRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP-DGSIPADN  163 (331)
T ss_dssp             EEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET-TSSB-TTS
T ss_pred             EEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecc-cCcCCCCC
Confidence            44544433       001 1111    1234567999999976665543332             222232 1110    


Q ss_pred             ---------eEEc-cCCCCCeEEEEEcCC-CCEEEEE-eCCCcEEEEeCCcc----cccCC-------------CCCCCC
Q 035621          118 ---------LRSF-SAHDKPVSCLKISPD-GSLLISG-GDDGVIATVPIFQL----VDEHT-------------DDKNPD  168 (387)
Q Consensus       118 ---------~~~~-~~~~~~v~~~~~~~~-~~~l~~~-~~dg~i~iwd~~~~----~~~~~-------------~~~~~~  168 (387)
                               ...+ .++. ....++|+|. +++.++= +.++.=.|--+...    |....             ......
T Consensus       164 P~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~  242 (331)
T PF07995_consen  164 PFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGF  242 (331)
T ss_dssp             TTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS
T ss_pred             ccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCc
Confidence                     0001 1222 2457899998 5544331 22222222222111    01000             000011


Q ss_pred             ccceEeeeccCCCeEEEEEeeCC-----CCceEEEEeCCCcEEEEeCCCCcEEEEEe-----cCCceeEEEeCCCCCeEE
Q 035621          169 DLMLQKFVAHNDSVTAITCCIGS-----FNSIIISCSMDCTCKFWRLLNGTHLSTVT-----FPCAIMGLALDPTETDFF  238 (387)
Q Consensus       169 ~~~~~~~~~~~~~i~~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~  238 (387)
                      ..+...+..| ..+..+.|....     .+.+|++.-..+.|....+.....+....     ....+..+++.|||.+++
T Consensus       243 ~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv  321 (331)
T PF07995_consen  243 VPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYV  321 (331)
T ss_dssp             ---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEE
T ss_pred             CccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEE
Confidence            2344445444 556667665332     24566666666788888887554333222     234789999999999988


Q ss_pred             EEccCCcEE
Q 035621          239 AAGSDGLIY  247 (387)
Q Consensus       239 ~~~~dg~i~  247 (387)
                      +...+|.|+
T Consensus       322 ~~d~~G~iy  330 (331)
T PF07995_consen  322 SDDSDGKIY  330 (331)
T ss_dssp             EE-TTTTEE
T ss_pred             EECCCCeEe
Confidence            888888876

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.94  E-value=1.5  Score=42.20  Aligned_cols=28  Identities=14%  Similarity=0.005  Sum_probs=18.6

Q ss_pred             CCeEEEEEeeCCCCceEEEEeCCCcEEEEeC
Q 035621          180 DSVTAITCCIGSFNSIIISCSMDCTCKFWRL  210 (387)
Q Consensus       180 ~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~  210 (387)
                      -.|..+.+++++  .+++..|..| |.|..+
T Consensus        85 f~v~~i~~n~~g--~~lal~G~~~-v~V~~L  112 (717)
T PF10168_consen   85 FEVHQISLNPTG--SLLALVGPRG-VVVLEL  112 (717)
T ss_pred             eeEEEEEECCCC--CEEEEEcCCc-EEEEEe
Confidence            357778888775  7777777655 444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02790 Kelch-like protein; Provisional

Probab=94.90  E-value=3.1  Score=38.30  Aligned_cols=137  Identities=12%  Similarity=-0.032  Sum_probs=63.8

Q ss_pred             CCcEEEeeCCCC-----cEEEEeCCCCceeE--eccCCCCCceeEEEcCccceeeeccccCCCC--CeEEEEEccCCCcc
Q 035621            7 CNEVILTSSPEG-----PITAYNPSSGAILA--HFSGSRSPRRGLTFAGKPFIAASHISPTTGS--GSVHLYNLWSSTPL   77 (387)
Q Consensus         7 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d--~~v~vw~~~~~~~~   77 (387)
                      ++.++++|+.++     .+..||..+++...  .+...... .+++...+..+..     |+.+  ..+..||..+++-.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~~~~~iYvi-----GG~~~~~sve~ydp~~n~W~  344 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVPANNKLYVV-----GGLPNPTSVERWFHGDAAWV  344 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEEECCEEEEE-----CCcCCCCceEEEECCCCeEE
Confidence            445667777543     46778887665433  22211111 1222223222222     4432  45778887655432


Q ss_pred             cccCCCCCeee-EEeccCCCEEEEecCCC---cEEEEeCCCCceeEE--ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 035621           78 HNIPVPEPVAP-LATTADGSYLFTGGLSG---NVYAISVPKGDILRS--FSAHDKPVSCLKISPDGSLLISGGDDGVIAT  151 (387)
Q Consensus        78 ~~~~~~~~v~~-~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  151 (387)
                      ..-+.+.+... ....-+|+..+.||.++   .+..||.++.+-...  +.........+.+  +++..+.|+   .+.+
T Consensus       345 ~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~GG---~~e~  419 (480)
T PHA02790        345 NMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVGR---NAEF  419 (480)
T ss_pred             ECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEECC---ceEE
Confidence            22222222211 22233677777777553   477888766543221  1111111122222  556666663   4667


Q ss_pred             EeC
Q 035621          152 VPI  154 (387)
Q Consensus       152 wd~  154 (387)
                      ||.
T Consensus       420 ydp  422 (480)
T PHA02790        420 YCE  422 (480)
T ss_pred             ecC
Confidence            776

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.83  E-value=1.3  Score=38.97  Aligned_cols=135  Identities=16%  Similarity=0.177  Sum_probs=73.6

Q ss_pred             ccccCCCcEEEeeC-----------CCC-cEEEEeCCC--Cce--eEeccCCCCCceeEEEcCccceeeeccccCCCCCe
Q 035621            2 LHHLPCNEVILTSS-----------PEG-PITAYNPSS--GAI--LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGS   65 (387)
Q Consensus         2 l~~s~~~~~l~~~~-----------~dg-~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~   65 (387)
                      |+|.++|+++++-.           ..+ .|.+++-.+  |+.  ...+.......+.+++.+++.+.+      ... .
T Consensus        19 ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~------~~~-~   91 (367)
T TIGR02604        19 VCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVA------TPP-D   91 (367)
T ss_pred             eeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEe------CCC-e
Confidence            67899999877742           223 677776543  332  233433344568888888764432      233 3


Q ss_pred             EEEE-EccCC-----Cc---ccccCC-----CCCeeeEEeccCCCEEEEecCC-------------------CcEEEEeC
Q 035621           66 VHLY-NLWSS-----TP---LHNIPV-----PEPVAPLATTADGSYLFTGGLS-------------------GNVYAISV  112 (387)
Q Consensus        66 v~vw-~~~~~-----~~---~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~i~d~  112 (387)
                      |..+ +.+..     +.   ...+..     ......++|.|||.+.++-+..                   |.|.-++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            4433 43211     11   111221     2347789999999866644421                   34555565


Q ss_pred             CCCceeEEccCCCCCeEEEEEcCCCCEEEEEe
Q 035621          113 PKGDILRSFSAHDKPVSCLKISPDGSLLISGG  144 (387)
Q Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  144 (387)
                      .+++. ..+...-.....++|+|+|+++++-.
T Consensus       172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence            54443 22322223456889999988776544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.57  E-value=0.0099  Score=51.82  Aligned_cols=139  Identities=11%  Similarity=0.167  Sum_probs=94.6

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-   81 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-   81 (387)
                      .|-|.+.-++.++.+..+..||- .++.+.... .++....++|..+....   ++.+-..+.+.+|++.+... +++. 
T Consensus        41 ~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvl---avlAek~~piylwd~n~eyt-qqLE~  114 (615)
T KOG2247|consen   41 RWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVL---AVLAEKTGPIYLWDVNSEYT-QQLES  114 (615)
T ss_pred             eEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchh---hhhhhcCCCeeechhhhhhH-HHHhc
Confidence            56777777888888889999994 566555443 33445566776533222   22256788999999965422 2222 


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGV  148 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  148 (387)
                       ....-.-+.|++....++.+...|.+.+++..+.+.+.....|...++++++.+.+. .+.++.|..
T Consensus       115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~  181 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT  181 (615)
T ss_pred             cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence             222223378999889999999999999999888777666666999999999998764 455555543

>PRK10115 protease 2; Provisional

Probab=94.56  E-value=4.8  Score=38.92  Aligned_cols=68  Identities=9%  Similarity=0.017  Sum_probs=44.8

Q ss_pred             CeeeEEeccCCCEEEEecCC-C----cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEe
Q 035621           85 PVAPLATTADGSYLFTGGLS-G----NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD------GVIATVP  153 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~d-g----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd  153 (387)
                      .+..+.++|||++|+.+... |    .|++.|+.+++.+...-....  ..++|.+|++.|+....+      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            46678899999988876432 2    689999988864322211111  469999999877665443      2466666


Q ss_pred             C
Q 035621          154 I  154 (387)
Q Consensus       154 ~  154 (387)
                      +
T Consensus       206 l  206 (686)
T PRK10115        206 I  206 (686)
T ss_pred             C
Confidence            6

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.53  E-value=0.23  Score=27.68  Aligned_cols=32  Identities=25%  Similarity=0.231  Sum_probs=25.9

Q ss_pred             ccEEEEEEecCC---CEEEEEeCCCcEEEEECCCc
Q 035621          274 GVVVSVMMMNEG---KNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       274 ~~v~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~  305 (387)
                      +.|.++.|+|+.   .+|+.+-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            358899999854   48888878899999999853

It contains a characteristic DLL sequence motif.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=94.48  E-value=5.2  Score=39.03  Aligned_cols=276  Identities=12%  Similarity=0.072  Sum_probs=142.7

Q ss_pred             cCCCcEEEeeCCCCcEEEEeCC-CCceeEe------ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--
Q 035621            5 LPCNEVILTSSPEGPITAYNPS-SGAILAH------FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--   75 (387)
Q Consensus         5 s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--   75 (387)
                      +++|.+.+.|..+|.+...-+. +++....      +-+...-..|+.+-+++.+.     .|+.-|.=++-.+.+..  
T Consensus       266 ~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng~lF-----vGS~~gdSqLi~L~~e~d~  340 (1096)
T KOG1897|consen  266 DLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNGVLF-----VGSRFGDSQLIKLNTEPDV  340 (1096)
T ss_pred             cCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCceEE-----EeccCCceeeEEccccCCC
Confidence            4567777777778877665444 3332222      22333334555555544433     25665555666554432  


Q ss_pred             -----cccccCCCCCeeeEEeccC----CCEEEEec---CCCcEEEEeCCCC-ce--eEEccCCCCCeEEEE--EcCC-C
Q 035621           76 -----PLHNIPVPEPVAPLATTAD----GSYLFTGG---LSGNVYAISVPKG-DI--LRSFSAHDKPVSCLK--ISPD-G  137 (387)
Q Consensus        76 -----~~~~~~~~~~v~~~~~~~~----~~~l~~~~---~dg~i~i~d~~~~-~~--~~~~~~~~~~v~~~~--~~~~-~  137 (387)
                           .+..+..-.|+..++.-..    +..+++++   .||++++....=+ ..  ...+.+ -..+..+.  ++++ .
T Consensus       341 gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d  419 (1096)
T KOG1897|consen  341 GSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYD  419 (1096)
T ss_pred             CchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCC
Confidence                 2244445578888877542    23455543   6789999864322 11  122333 34566666  4332 2


Q ss_pred             CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE
Q 035621          138 SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS  217 (387)
Q Consensus       138 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  217 (387)
                      ++++.+-.+- -++..+..            ........+-......+.++.-. ++.|+-.. ...||+++-.  ....
T Consensus       420 ~ylvlsf~~e-Trvl~i~~------------e~ee~~~~gf~~~~~Tif~S~i~-g~~lvQvT-s~~iRl~ss~--~~~~  482 (1096)
T KOG1897|consen  420 NYLVLSFISE-TRVLNISE------------EVEETEDPGFSTDEQTIFCSTIN-GNQLVQVT-SNSIRLVSSA--GLRS  482 (1096)
T ss_pred             cEEEEEeccc-eEEEEEcc------------ceEEeccccccccCceEEEEccC-CceEEEEe-cccEEEEcch--hhhh
Confidence            2555544433 34444411            11111112222233334433332 23333332 2457777644  3444


Q ss_pred             EEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC------CEEEEE
Q 035621          218 TVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG------KNLVSA  291 (387)
Q Consensus       218 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------~~l~s~  291 (387)
                      ....+..++....+.+...++.++.++.+...++........        ....-...|.|+.++|-|      ++++.|
T Consensus       483 ~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~--------~~~~~e~evaCLDisp~~d~~~~s~~~aVG  554 (1096)
T KOG1897|consen  483 EWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREV--------SHKEFEYEVACLDISPLGDAPNKSRLLAVG  554 (1096)
T ss_pred             cccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeee--------eeheecceeEEEecccCCCCCCcceEEEEE
Confidence            555666666666666777888888888888777766431111        011235678999998742      278888


Q ss_pred             eCCCcEEE-EECCCccEEEEe
Q 035621          292 AEDGSVYI-WEIEKRQVVMVL  311 (387)
Q Consensus       292 ~~dg~i~i-wd~~~~~~~~~~  311 (387)
                      ..+..+.+ --..+...+...
T Consensus       555 ~Ws~~~~~l~~~pd~~~~~~~  575 (1096)
T KOG1897|consen  555 LWSDISMILTFLPDLILITHE  575 (1096)
T ss_pred             eecceEEEEEECCCcceeeee
Confidence            87765544 344455554444

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=94.39  E-value=0.59  Score=40.95  Aligned_cols=160  Identities=16%  Similarity=0.109  Sum_probs=96.8

Q ss_pred             CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee-EEcc-CCCC----CeE-EEEEcCCCCEEEEEeCCCcEEEE-eC
Q 035621           83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL-RSFS-AHDK----PVS-CLKISPDGSLLISGGDDGVIATV-PI  154 (387)
Q Consensus        83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~-~~~~----~v~-~~~~~~~~~~l~~~~~dg~i~iw-d~  154 (387)
                      .+.+..+-..|||+.++.-+. .++.++++.+.... +++- ...+    .|+ .+..-..|.-+++++.||.|.-| |.
T Consensus       220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv  298 (733)
T COG4590         220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV  298 (733)
T ss_pred             ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence            467888899999999887655 67888888655322 1111 1111    122 11222245668888999988777 44


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE  234 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  234 (387)
                      ++...       +.-..++.++-...++..+  .|+.+.+-+++-+..|++..+.....+.+-.-..-..+.-++++|.+
T Consensus       299 r~~~~-------p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~  369 (733)
T COG4590         299 RRDGQ-------PHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQ  369 (733)
T ss_pred             ecCCC-------CcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCccc
Confidence            32111       2222333343334445444  35555577888888999988875544443332333467778999999


Q ss_pred             CeEEEEccCCcEEEEeccc
Q 035621          235 TDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       235 ~~l~~~~~dg~i~i~d~~~  253 (387)
                      .++++- ..|.|+++.+++
T Consensus       370 ~~Ll~e-~~gki~~~~l~N  387 (733)
T COG4590         370 AYLLSE-DQGKIRLAQLEN  387 (733)
T ss_pred             chheee-cCCceEEEEecC
Confidence            988764 356788887765

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.36  E-value=0.26  Score=27.47  Aligned_cols=33  Identities=6%  Similarity=-0.048  Sum_probs=26.8

Q ss_pred             CCeEEEEEeeCCC-CceEEEEeCCCcEEEEeCCC
Q 035621          180 DSVTAITCCIGSF-NSIIISCSMDCTCKFWRLLN  212 (387)
Q Consensus       180 ~~i~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~  212 (387)
                      +.+.++.|+|.+. ..+|+.+-.-+.+.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3678999998652 26888888889999999995

It contains a characteristic DLL sequence motif.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.22  E-value=2.7  Score=34.78  Aligned_cols=155  Identities=13%  Similarity=0.057  Sum_probs=85.9

Q ss_pred             CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEe-CCCCcee
Q 035621           40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAIS-VPKGDIL  118 (387)
Q Consensus        40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~  118 (387)
                      .+.+.+++++....+... .......+.++.  .+...........+..-.|++++...+....+...+++. ..+++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~-~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVS-EGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEE-EcCCCCEEEEEc--CCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            578889998654333211 112333444444  444333333445788889999988777766666666663 3333222


Q ss_pred             -EEcc--CCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCC
Q 035621          119 -RSFS--AHDKPVSCLKISPDGSLLISGG---DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF  192 (387)
Q Consensus       119 -~~~~--~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  192 (387)
                       ..+.  .-...|+.++++|||..++...   .++.|.+=-+......   ..................+..+.|.++. 
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g---~~~~l~~~~~~~~~~~~~v~~v~W~~~~-  177 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG---VPRRLTGPRRVAPPLLSDVTDVAWSDDS-  177 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC---CcceeccceEecccccCcceeeeecCCC-
Confidence             1121  1122899999999999877665   3467776655321111   0001112222223345688899998874 


Q ss_pred             CceEEEEeCC
Q 035621          193 NSIIISCSMD  202 (387)
Q Consensus       193 ~~~l~s~~~d  202 (387)
                       .+++.+...
T Consensus       178 -~L~V~~~~~  186 (253)
T PF10647_consen  178 -TLVVLGRSA  186 (253)
T ss_pred             -EEEEEeCCC
Confidence             555555443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.21  E-value=2.1  Score=33.81  Aligned_cols=110  Identities=10%  Similarity=0.167  Sum_probs=67.2

Q ss_pred             eEEEEeCCCcEEEEeCC--CCcEEEEEecCCceeEEEeCCCCCeEEEEccC---C---cEEEE-ecccc----cccc--c
Q 035621          195 IIISCSMDCTCKFWRLL--NGTHLSTVTFPCAIMGLALDPTETDFFAAGSD---G---LIYKG-LLKYQ----SRQQ--M  259 (387)
Q Consensus       195 ~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~i~-d~~~~----~~~~--~  259 (387)
                      .|..+...+.|.+|++.  ..+.+.+|..-+.|..+.++..|+++++--.+   .   .+++| +++..    .+..  .
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi  109 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI  109 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence            44333556789999988  45567778777999999999999999996442   2   44544 23221    0000  0


Q ss_pred             -----------ccc--ceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccE
Q 035621          260 -----------HKG--QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       260 -----------~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  307 (387)
                                 ...  -.+.+.  .-..++.+++..|-..-|+.|+ ++.+.+|.+.....
T Consensus       110 aG~~v~~~~~~~~~~qleiiEl--Pl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~  167 (215)
T PF14761_consen  110 AGHRVTPSFNESSKDQLEIIEL--PLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI  167 (215)
T ss_pred             cccccccCCCCccccceEEEEe--cCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence                       000  111122  2345677888887655566665 45799998765543

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.12  E-value=2  Score=43.15  Aligned_cols=26  Identities=19%  Similarity=0.350  Sum_probs=23.4

Q ss_pred             CccccCCCcEEEeeCCCCcEEEEeCC
Q 035621            1 LLHHLPCNEVILTSSPEGPITAYNPS   26 (387)
Q Consensus         1 vl~~s~~~~~l~~~~~dg~i~iwd~~   26 (387)
                      +++|+|...++|.|+.+|.|++|-..
T Consensus        40 ~~afD~~q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   40 ALAFDPTQGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             ceeeccccceEEEEEecccEEEeccc
Confidence            47899999999999999999999864

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.10  E-value=1.7  Score=38.94  Aligned_cols=137  Identities=11%  Similarity=0.075  Sum_probs=82.6

Q ss_pred             EEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCC------CceEEEEeCCCcEEEEeCC-CCc
Q 035621          142 SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF------NSIIISCSMDCTCKFWRLL-NGT  214 (387)
Q Consensus       142 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~l~s~~~d~~i~iwd~~-~~~  214 (387)
                      .|+....++-.|+            ..++.+..+..|...  -+.+.|...      .+.|+--| +..|.-.|.+ .|.
T Consensus       485 dg~~~~kLykmDI------------ErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gN  549 (776)
T COG5167         485 DGGERDKLYKMDI------------ERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGN  549 (776)
T ss_pred             cCCCcccceeeec------------ccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCC
Confidence            3444455555566            566677777766654  345555421      23444444 4444444544 344


Q ss_pred             EEEEEecCCceeEEEeCC----CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE
Q 035621          215 HLSTVTFPCAIMGLALDP----TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS  290 (387)
Q Consensus       215 ~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  290 (387)
                      .+.........+.-.|+.    ...++++++..|.|++||.-.         ......+.+-...|..+..+.+|+++++
T Consensus       550 Ki~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig---------~rAKtalP~lG~aIk~idvta~Gk~ila  620 (776)
T COG5167         550 KIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG---------KRAKTALPGLGDAIKHIDVTANGKHILA  620 (776)
T ss_pred             ceeeeeehhccccccccccccccCceEEEecCCCceeeehhhc---------chhhhcCcccccceeeeEeecCCcEEEE
Confidence            444444444444444443    346999999999999999753         2233334466778999999999998887


Q ss_pred             EeCCCcEEEEECC
Q 035621          291 AAEDGSVYIWEIE  303 (387)
Q Consensus       291 ~~~dg~i~iwd~~  303 (387)
                      .|.. .+.+-|+.
T Consensus       621 TCk~-yllL~d~~  632 (776)
T COG5167         621 TCKN-YLLLTDVP  632 (776)
T ss_pred             eecc-eEEEEecc
Confidence            6654 66676653

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.84  E-value=2.7  Score=33.28  Aligned_cols=175  Identities=15%  Similarity=0.153  Sum_probs=89.2

Q ss_pred             CEEEEecCCCcEEEEeCC--CCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC------cEEEEeCCcccccCCCCCCC
Q 035621           96 SYLFTGGLSGNVYAISVP--KGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG------VIATVPIFQLVDEHTDDKNP  167 (387)
Q Consensus        96 ~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~  167 (387)
                      +.|+.+...+.|.+|++.  ..+....+.. -+.|..+.++..|+++++--.+.      .+|+|=-   |...      
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~N---Wr~~------   98 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFN---WRSQ------   98 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEE---hhhh------
Confidence            345444566789999987  3355666654 37899999999999999875432      3455411   1100      


Q ss_pred             CccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEE
Q 035621          168 DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY  247 (387)
Q Consensus       168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  247 (387)
                              .....++.. ...  +  . -++++..+..     ...-.+-.++...++.+++-.|-...|++|+. +.+.
T Consensus        99 --------~~~~~~v~v-Ria--G--~-~v~~~~~~~~-----~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~  158 (215)
T PF14761_consen   99 --------KEENSPVRV-RIA--G--H-RVTPSFNESS-----KDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLV  158 (215)
T ss_pred             --------cccCCcEEE-EEc--c--c-ccccCCCCcc-----ccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEE
Confidence                    011112211 100  0  0 1111111111     11112334456678888888887767777764 4778


Q ss_pred             EEecccccccc-cccccee-Eeecccccc-cEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          248 KGLLKYQSRQQ-MHKGQEL-VTLANRHDG-VVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       248 i~d~~~~~~~~-~~~~~~~-~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      +|.+....... ....-.. ......|.+ .+..+++.  +.|+|..+ +-.++++.+.
T Consensus       159 lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~  214 (215)
T PF14761_consen  159 LFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE  214 (215)
T ss_pred             EEEEEEEEEecccccEEechhhhhheecCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence            88777643311 0000000 001111222 35566664  45777765 4467776543

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.77  E-value=4.5  Score=36.53  Aligned_cols=48  Identities=13%  Similarity=0.167  Sum_probs=31.4

Q ss_pred             cEEEEEEecCC---CEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeE
Q 035621          275 VVVSVMMMNEG---KNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEM  322 (387)
Q Consensus       275 ~v~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  322 (387)
                      .+..++|+|+.   ..|..-+.|..||+||+.....+....+.-..+.++.
T Consensus       167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpgepgRS~tn~  217 (741)
T KOG4460|consen  167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPTNV  217 (741)
T ss_pred             eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCCcCCCCccc
Confidence            35567788764   4666677888999999888777755554433333333

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=93.76  E-value=6.2  Score=37.22  Aligned_cols=161  Identities=12%  Similarity=0.177  Sum_probs=87.5

Q ss_pred             CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee--EEcc-CCCC------CeEEEEEcCCCCEEEEEeC-CC---
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL--RSFS-AHDK------PVSCLKISPDGSLLISGGD-DG---  147 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~-~~~~------~v~~~~~~~~~~~l~~~~~-dg---  147 (387)
                      +..+.+..+.|.++++.+++...+|.|.+||...+...  ..++ .+..      -|..........++++.+. ++   
T Consensus       127 kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~  206 (670)
T PF10395_consen  127 KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKL  206 (670)
T ss_pred             EcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence            35678899999999999999999999999999333221  1221 1121      1112111112345555544 33   


Q ss_pred             cEEEEeCCcccccCCCCCCCCccceEeee---ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCC-
Q 035621          148 VIATVPIFQLVDEHTDDKNPDDLMLQKFV---AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC-  223 (387)
Q Consensus       148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-  223 (387)
                      ..+++.+.           .....+..+.   .+........|+... |.+..-  .+++|.+|++.+.+..+++..+. 
T Consensus       207 ~ykL~~l~-----------~~~~~~~El~s~~~e~~~~~~s~f~Y~~-G~LY~l--~~~~i~~ysip~f~~~~tI~l~~i  272 (670)
T PF10395_consen  207 SYKLISLS-----------NESSSIFELSSTILENFGLEDSKFCYQF-GKLYQL--SKKTISSYSIPNFQIQKTISLPSI  272 (670)
T ss_pred             EEEEEEec-----------cCCcceEEeehheeccCCcccceEEEeC-CEEEEE--eCCEEEEEEcCCceEEEEEEechh
Confidence            24455441           1112222222   233333344444442 333333  67899999999998888877542 


Q ss_pred             ------ceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621          224 ------AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ  257 (387)
Q Consensus       224 ------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  257 (387)
                            .+.++.- |..++++.+ .++.|++.|+......
T Consensus       273 i~~~~~~~vSl~~-~s~nRvLLs-~~nkIyLld~~~~siL  310 (670)
T PF10395_consen  273 IDKESDDLVSLKP-PSPNRVLLS-VNNKIYLLDLKFESIL  310 (670)
T ss_pred             hccccccceEeec-CCCCeEEEE-cCCEEEEEeehhhhhh
Confidence                  2223322 233333333 3568999999875433

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PRK13684 Ycf48-like protein; Provisional

Probab=93.71  E-value=4.3  Score=35.27  Aligned_cols=141  Identities=13%  Similarity=0.117  Sum_probs=74.2

Q ss_pred             cccCCCcEEEeeCCCCcEEE-EeCCCCc-eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            3 HHLPCNEVILTSSPEGPITA-YNPSSGA-ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~i-wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      .+.|++.+++++.. |.+.. ++ ..++ ....-..-...++++.+.++..+..     .+..|.+.+=..+.+..-...
T Consensus       179 ~~~~~g~~v~~g~~-G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~-----vg~~G~~~~~s~d~G~sW~~~  251 (334)
T PRK13684        179 RRSPDGKYVAVSSR-GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWM-----LARGGQIRFNDPDDLESWSKP  251 (334)
T ss_pred             EECCCCeEEEEeCC-ceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEE-----EecCCEEEEccCCCCCccccc
Confidence            45677777766654 55443 22 1222 1112223345688888887543322     244565543233444332222


Q ss_pred             CCC-----CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621           81 PVP-----EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS---AHDKPVSCLKISPDGSLLISGGDDGVIATV  152 (387)
Q Consensus        81 ~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  152 (387)
                      ..+     ..+..+.+.+++..++++ .+|.+. .....++.-....   .-......+.|..+++.++ .+..|.|.-|
T Consensus       252 ~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~  328 (334)
T PRK13684        252 IIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRY  328 (334)
T ss_pred             cCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEe
Confidence            221     347788999887765554 567554 3344444333332   2223577888876666554 5566887766


Q ss_pred             e
Q 035621          153 P  153 (387)
Q Consensus       153 d  153 (387)
                      +
T Consensus       329 ~  329 (334)
T PRK13684        329 V  329 (334)
T ss_pred             c
Confidence            4

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.45  E-value=0.74  Score=37.07  Aligned_cols=86  Identities=19%  Similarity=0.209  Sum_probs=57.9

Q ss_pred             cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecc-------cccccEEEEEEecCCCEEEEEeC
Q 035621          221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLAN-------RHDGVVVSVMMMNEGKNLVSAAE  293 (387)
Q Consensus       221 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~  293 (387)
                      .+.++..  +..++.++++-+.+|.+++||+.........  ..+..++.       .....|..+.++.+|.-+++-+ 
T Consensus        11 Lgs~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~--~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-   85 (219)
T PF07569_consen   11 LGSPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPP--VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-   85 (219)
T ss_pred             cCCceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCC--ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-
Confidence            3444444  4457889999999999999999986543322  11111121       3556789999998888777764 


Q ss_pred             CCcEEEEECCCccEEEEe
Q 035621          294 DGSVYIWEIEKRQVVMVL  311 (387)
Q Consensus       294 dg~i~iwd~~~~~~~~~~  311 (387)
                      +|..+.|+.+-+.-+...
T Consensus        86 ng~~y~y~~~L~~W~~vs  103 (219)
T PF07569_consen   86 NGDSYSYSPDLGCWIRVS  103 (219)
T ss_pred             CCCEEEeccccceeEEec
Confidence            578999997766555433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.43  E-value=0.51  Score=37.95  Aligned_cols=61  Identities=13%  Similarity=0.154  Sum_probs=44.8

Q ss_pred             CceEEEEeCCCcEEEEeCCCCcEEEEE---------------ecCCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621          193 NSIIISCSMDCTCKFWRLLNGTHLSTV---------------TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       193 ~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  254 (387)
                      +.++++-+.+|.+++||+.+++.+..-               .....|..+.++.+|.-+++-+ +|..+.|+....
T Consensus        22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence            478999999999999999998765432               1235677888887777666544 577888877653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.35  E-value=0.7  Score=43.33  Aligned_cols=80  Identities=18%  Similarity=0.249  Sum_probs=45.2

Q ss_pred             CCCCeEEEEccCCcEEEEeccccc----cccc--cccc----eeEeec-------ccccccEEEEEEec----CCCEEEE
Q 035621          232 PTETDFFAAGSDGLIYKGLLKYQS----RQQM--HKGQ----ELVTLA-------NRHDGVVVSVMMMN----EGKNLVS  290 (387)
Q Consensus       232 ~~~~~l~~~~~dg~i~i~d~~~~~----~~~~--~~~~----~~~~~~-------~~~~~~v~~~~~s~----~~~~l~s  290 (387)
                      ++...++++..||.+.........    ....  ....    .+..+.       ......+..+++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            466788888888888887776511    0000  0000    000000       01123455566655    6789999


Q ss_pred             EeCCCcEEEEECCCccEEEEe
Q 035621          291 AAEDGSVYIWEIEKRQVVMVL  311 (387)
Q Consensus       291 ~~~dg~i~iwd~~~~~~~~~~  311 (387)
                      -+.|+.+|+||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999997765

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.16  E-value=3.8  Score=41.20  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=27.7

Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK  114 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  114 (387)
                      .+.....++|+|...+++.+...|.|++|-...
T Consensus        34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCCCcceeeccccceEEEEEecccEEEecccc
Confidence            445677889999999999999999999997543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.08  E-value=1.8  Score=43.35  Aligned_cols=139  Identities=17%  Similarity=0.231  Sum_probs=86.7

Q ss_pred             CCCCcEEEEeCCCCceeEeccCCCCCceeEEEc-Cccceee---eccccCCCCCeEEEEEccCCCcc---------cccC
Q 035621           15 SPEGPITAYNPSSGAILAHFSGSRSPRRGLTFA-GKPFIAA---SHISPTTGSGSVHLYNLWSSTPL---------HNIP   81 (387)
Q Consensus        15 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~---~~~~~~~~d~~v~vw~~~~~~~~---------~~~~   81 (387)
                      +-|+.+.+|+.+++.....+.+-...|..+..- |++-+..   .++...+.--.|.++-+.-.+..         ..+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            457899999999988888888877777777653 3221111   12222334445666654322111         1111


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeC----CCC---c-e----------------eEEcc-CCCCCeEEEEEcC
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISV----PKG---D-I----------------LRSFS-AHDKPVSCLKISP  135 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~  135 (387)
                       .+-.|.|+....+|+.+++| .||.  +|.+    ..+   + +                +-.+. .+..+|..++...
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence             23468899988888776665 5664  4433    111   1 0                11122 4677999999988


Q ss_pred             CCCEEEEEeCCCcEEEEeCCc
Q 035621          136 DGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus       136 ~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      .-+.+.+-+..|+|.+||+..
T Consensus       253 SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCceEEEEEccC
Confidence            778899999999999999954

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.83  E-value=6.5  Score=34.78  Aligned_cols=202  Identities=11%  Similarity=0.080  Sum_probs=0.0

Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEccCCC--CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccce
Q 035621           95 GSYLFTGGLSGNVYAISVPKGDILRSFSAHD--KPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML  172 (387)
Q Consensus        95 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  172 (387)
                      +..++++..+|.|.-+|..+++.+.....-.  ..+.+-.+..+|+ ++.++.++.+..+|.            .++...
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~------------~~G~~~  134 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDA------------STGTLV  134 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEEC------------CCCcEE


Q ss_pred             EeeeccC-CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCCCeEEEEcc--CCcE
Q 035621          173 QKFVAHN-DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTETDFFAAGS--DGLI  246 (387)
Q Consensus       173 ~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~--dg~i  246 (387)
                      -...... ..+..-....+   ..+..++.++.+...|..+++....+..   ......-........++.+..  ++.+
T Consensus       135 W~~~~~~~~~~~~~~v~~~---~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~  211 (370)
T COG1520         135 WSRNVGGSPYYASPPVVGD---GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGIL  211 (370)
T ss_pred             EEEecCCCeEEecCcEEcC---cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceE


Q ss_pred             EEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          247 YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       247 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      .-.|...+......+.............+....----.+.-+..++.++.+...|..+++.+..+.
T Consensus       212 ~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~  277 (370)
T COG1520         212 YALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP  277 (370)
T ss_pred             EEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.70  E-value=5.5  Score=33.69  Aligned_cols=174  Identities=11%  Similarity=0.125  Sum_probs=87.5

Q ss_pred             CeEEEEEccCCCcccccCCC-------CCeeeEEeccCC-----CEEEEec-CCCcEEEEeCCCCceeEEccCC------
Q 035621           64 GSVHLYNLWSSTPLHNIPVP-------EPVAPLATTADG-----SYLFTGG-LSGNVYAISVPKGDILRSFSAH------  124 (387)
Q Consensus        64 ~~v~vw~~~~~~~~~~~~~~-------~~v~~~~~~~~~-----~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~------  124 (387)
                      -.+.+||+.+++.++.+..+       ..+..+.+....     .+++.+. ..+.|.++|+.+++.-+.+..+      
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            36778888888877766643       345566666522     2444443 3457999999888654433221      


Q ss_pred             -------------CCCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCc--ccccCCCCCCCCccceEeeeccCCCeEEEE
Q 035621          125 -------------DKPVSCLKISP---DGSLLISGGDDGVIATVPIFQ--LVDEHTDDKNPDDLMLQKFVAHNDSVTAIT  186 (387)
Q Consensus       125 -------------~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  186 (387)
                                   ...+..++.+|   +++.|.-....+. ++|.+..  +.+............++.+-........++
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~  192 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA  192 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence                         22356666655   5566666554332 2333311  111110000000111222211123445566


Q ss_pred             EeeCCCCceEEEEeCCCcEEEEeCCCCc---EEEEEe-c---CCceeEEEeCC--CCCeEEEE
Q 035621          187 CCIGSFNSIIISCSMDCTCKFWRLLNGT---HLSTVT-F---PCAIMGLALDP--TETDFFAA  240 (387)
Q Consensus       187 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~-~---~~~v~~~~~~~--~~~~l~~~  240 (387)
                      +.+.  |.++++--..+.|..|+..+.-   ....+. -   -..+..+.+.+  +|.+.+..
T Consensus       193 ~D~~--G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  193 IDPN--GNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EETT--TEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             ECCC--CcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            6665  5888888889999999987621   122222 1   23567888887  65554444

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.68  E-value=0.59  Score=25.82  Aligned_cols=40  Identities=10%  Similarity=0.221  Sum_probs=27.4

Q ss_pred             CCCcEEEee-CCCCcEEEEeCCCCceeEeccCCCCCceeEEE
Q 035621            6 PCNEVILTS-SPEGPITAYNPSSGAILAHFSGSRSPRRGLTF   46 (387)
Q Consensus         6 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~   46 (387)
                      |++++|+++ ..+++|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            577765554 46789999999999888877653 22344444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.67  E-value=6.6  Score=34.45  Aligned_cols=204  Identities=15%  Similarity=0.187  Sum_probs=108.8

Q ss_pred             CCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccce---eeeccccCCC---CCeEEEEEccCC-Cccc
Q 035621            6 PCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFI---AASHISPTTG---SGSVHLYNLWSS-TPLH   78 (387)
Q Consensus         6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~---d~~v~vw~~~~~-~~~~   78 (387)
                      |...+++....++-+.+||++ |+.++.+.  .+.++.+..-.+..+   .....+.+..   ..+|++|.+... ..+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            445677777788889999984 77777764  234444443211000   0001111222   257999988532 1222


Q ss_pred             ccC--------CCCCeeeEEec--c-CCC-EEEEecCCCcEEEEeCC---CC----ceeEEccCCCCCeEEEEEcCCCCE
Q 035621           79 NIP--------VPEPVAPLATT--A-DGS-YLFTGGLSGNVYAISVP---KG----DILRSFSAHDKPVSCLKISPDGSL  139 (387)
Q Consensus        79 ~~~--------~~~~v~~~~~~--~-~~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~v~~~~~~~~~~~  139 (387)
                      .+.        ....++.+|+.  + +|. +.++...+|.+..|.+.   .+    ++++.|.. ...+-.|........
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~  221 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGR  221 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCC
Confidence            222        11346667764  3 344 56667788988877763   33    35667764 447888999888889


Q ss_pred             EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee--ccCCCeEEEEEeeCC--CCceEEEEeCCCcEEEEeCCCC-c
Q 035621          140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSVTAITCCIGS--FNSIIISCSMDCTCKFWRLLNG-T  214 (387)
Q Consensus       140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~-~  214 (387)
                      |+.+-++.-|.-|+....       .......+....  .....|..|++-...  .+.+|++.-.+++..+|+.... .
T Consensus       222 LYvgEE~~GIW~y~Aep~-------~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~  294 (381)
T PF02333_consen  222 LYVGEEDVGIWRYDAEPE-------GGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNA  294 (381)
T ss_dssp             EEEEETTTEEEEEESSCC-------C-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--
T ss_pred             EEEecCccEEEEEecCCC-------CCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCc
Confidence            999999987777766210       001122222222  234577888876543  2345555555788999997643 4


Q ss_pred             EEEEEe
Q 035621          215 HLSTVT  220 (387)
Q Consensus       215 ~~~~~~  220 (387)
                      .+..|.
T Consensus       295 ~~g~f~  300 (381)
T PF02333_consen  295 YVGSFR  300 (381)
T ss_dssp             EEEEEE
T ss_pred             ccceEE
Confidence            444443

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PRK13684 Ycf48-like protein; Provisional

Probab=92.45  E-value=6.8  Score=34.07  Aligned_cols=151  Identities=12%  Similarity=0.131  Sum_probs=79.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEE-EeCCcccccCCCCCCCCccceEe-eeccCCCeEEEEEeeCCCCceEEEEeCC
Q 035621          125 DKPVSCLKISPDGSLLISGGDDGVIAT-VPIFQLVDEHTDDKNPDDLMLQK-FVAHNDSVTAITCCIGSFNSIIISCSMD  202 (387)
Q Consensus       125 ~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~d  202 (387)
                      ...+.++.+.|++.+++++ ..|.+.. +|-             ....... ...-...++++.+.+++  +.++. +..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-------------gg~tW~~~~~~~~~~l~~i~~~~~g--~~~~v-g~~  234 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-------------GQTAWTPHQRNSSRRLQSMGFQPDG--NLWML-ARG  234 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCC-------------CCCeEEEeeCCCcccceeeeEcCCC--CEEEE-ecC
Confidence            4578899999988666554 4455432 221             1111111 11234567888887764  55554 456


Q ss_pred             CcEEEEeCCCCcEEEEEecC-----CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEE
Q 035621          203 CTCKFWRLLNGTHLSTVTFP-----CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV  277 (387)
Q Consensus       203 ~~i~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  277 (387)
                      |.+++=....+..-.....+     ..+..+.+.|++..+ +++.+|.+.. ....+......      .....-.....
T Consensus       235 G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~~-S~d~G~tW~~~------~~~~~~~~~~~  306 (334)
T PRK13684        235 GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLLV-SKDGGKTWEKD------PVGEEVPSNFY  306 (334)
T ss_pred             CEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEE-EEcCCCeEEE-eCCCCCCCeEC------CcCCCCCcceE
Confidence            76653233444433322222     347788999877654 4555676653 22222111110      00001123577


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEE
Q 035621          278 SVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       278 ~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      .+.|..+++.+++| ..|.|.-|+
T Consensus       307 ~~~~~~~~~~~~~G-~~G~il~~~  329 (334)
T PRK13684        307 KIVFLDPEKGFVLG-QRGVLLRYV  329 (334)
T ss_pred             EEEEeCCCceEEEC-CCceEEEec
Confidence            78877776666654 678887775

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.39  E-value=4.2  Score=34.10  Aligned_cols=99  Identities=11%  Similarity=0.059  Sum_probs=59.0

Q ss_pred             CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe------CCCcEEEEeCCcccccCCCCCCCCccceEeeec-
Q 035621          105 GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG------DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA-  177 (387)
Q Consensus       105 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-  177 (387)
                      ..|++||..+.+-...-.+-.+.|++|.|..+.++++.|.      ....+..||+..             .....+.. 
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~-------------~~w~~~~~~   82 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN-------------QTWSSLGGG   82 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC-------------CeeeecCCc
Confidence            4599999877665544445678899999986666666664      345688888832             12222222 


Q ss_pred             ----cCCCeEEEEEeeCCCCceEEEEe-CC--CcEEEEeCCCCcEE
Q 035621          178 ----HNDSVTAITCCIGSFNSIIISCS-MD--CTCKFWRLLNGTHL  216 (387)
Q Consensus       178 ----~~~~i~~~~~~~~~~~~~l~s~~-~d--~~i~iwd~~~~~~~  216 (387)
                          -.+++..+.+......++.+.|. .+  ..|..||=.+...+
T Consensus        83 ~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i  128 (281)
T PF12768_consen   83 SSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI  128 (281)
T ss_pred             ccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence                23677777765443334554544 22  34666765444433

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=92.01  E-value=13  Score=36.43  Aligned_cols=201  Identities=15%  Similarity=0.078  Sum_probs=110.3

Q ss_pred             EEEecCCCcEEEEeCCC-CceeE-------EccCCCCCeEEEEE--cCCCCEEEEEeCC---CcEEEEeCCcccccCCCC
Q 035621           98 LFTGGLSGNVYAISVPK-GDILR-------SFSAHDKPVSCLKI--SPDGSLLISGGDD---GVIATVPIFQLVDEHTDD  164 (387)
Q Consensus        98 l~~~~~dg~i~i~d~~~-~~~~~-------~~~~~~~~v~~~~~--~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~  164 (387)
                      +++-..+|.+.+|-.+. ++...       .+..-...++..++  ..+|+.++.++.+   +.|++|.+.-.|......
T Consensus        65 ~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~  144 (753)
T PF11635_consen   65 CIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQ  144 (753)
T ss_pred             EEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCcc
Confidence            44456778888887632 22111       11123345555444  4567666555554   889998875555411111


Q ss_pred             CCCCccceEeee---------------------ccCCCeEEEEEee-----CCCCceEEEEeC----CCcEEEEeCCCCc
Q 035621          165 KNPDDLMLQKFV---------------------AHNDSVTAITCCI-----GSFNSIIISCSM----DCTCKFWRLLNGT  214 (387)
Q Consensus       165 ~~~~~~~~~~~~---------------------~~~~~i~~~~~~~-----~~~~~~l~s~~~----d~~i~iwd~~~~~  214 (387)
                      .++...+...+.                     ..-..++.+.+-+     +.....+++.+.    ...|.-|.+++..
T Consensus       145 ~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~  224 (753)
T PF11635_consen  145 IDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQ  224 (753)
T ss_pred             CCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccC
Confidence            111000100000                     0113556666654     222245555443    2368889876421


Q ss_pred             E------------------------E---EEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccc----ccc
Q 035621          215 H------------------------L---STVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMH----KGQ  263 (387)
Q Consensus       215 ~------------------------~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~  263 (387)
                      .                        +   ..+..+..|.+++...-+..++..-.||.|.++|..+.......    ...
T Consensus       225 ~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~  304 (753)
T PF11635_consen  225 QPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPP  304 (753)
T ss_pred             cccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCc
Confidence            0                        0   11123467888888888899999999999999998876433222    111


Q ss_pred             e-eEee-----cccccccEEEEEEecCCCEEEEEeCCCcEE
Q 035621          264 E-LVTL-----ANRHDGVVVSVMMMNEGKNLVSAAEDGSVY  298 (387)
Q Consensus       264 ~-~~~~-----~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  298 (387)
                      . +...     ...+-..+..++|||.+..++.-..+|.+.
T Consensus       305 ~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  305 NTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             cccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence            1 1111     011222456789999999999999999866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.91  E-value=9.4  Score=34.55  Aligned_cols=115  Identities=14%  Similarity=0.114  Sum_probs=62.4

Q ss_pred             eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE--EEEEe------cCCceeEEEeCCCC------CeEEEE
Q 035621          175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH--LSTVT------FPCAIMGLALDPTE------TDFFAA  240 (387)
Q Consensus       175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~------~~~~v~~~~~~~~~------~~l~~~  240 (387)
                      +...-..-+.|+|.|++  ++|++--..|.|++++..++..  +..+.      .......++++|+-      .+|++.
T Consensus        25 va~GL~~Pw~maflPDG--~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs  102 (454)
T TIGR03606        25 LLSGLNKPWALLWGPDN--QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS  102 (454)
T ss_pred             EECCCCCceEEEEcCCC--eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence            33344566789998874  7777665569999998665432  21111      24668899999884      345444


Q ss_pred             c----------cCCcEEEEeccccccccccccceeEeec---ccccccEEEEEEecCCCEEEEEeCC
Q 035621          241 G----------SDGLIYKGLLKYQSRQQMHKGQELVTLA---NRHDGVVVSVMMMNEGKNLVSAAED  294 (387)
Q Consensus       241 ~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d  294 (387)
                      .          ....|.-|.+...... ......+....   ..|.  -..|+|.|||.++++.+..
T Consensus       103 yt~~~~~~~~~~~~~I~R~~l~~~~~~-l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       103 YTYKNGDKELPNHTKIVRYTYDKSTQT-LEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             EeccCCCCCccCCcEEEEEEecCCCCc-cccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence            2          1233444544321110 11111222111   1243  3467799999877765543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK05560 DNA gyrase subunit A; Validated

Probab=91.82  E-value=14  Score=36.45  Aligned_cols=206  Identities=11%  Similarity=0.080  Sum_probs=107.4

Q ss_pred             ccCCCEEEEecCCCcEEEEeCCCCce---------eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCC
Q 035621           92 TADGSYLFTGGLSGNVYAISVPKGDI---------LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHT  162 (387)
Q Consensus        92 ~~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  162 (387)
                      -++...++.-+.+|.|+-..+.+...         ...++. ...+..+........++..+..|.+.............
T Consensus       495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~  573 (805)
T PRK05560        495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASR  573 (805)
T ss_pred             cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCc
Confidence            34566777888889888776543211         111222 23344444444555677777778877665543222110


Q ss_pred             CCCCCCccce---EeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC-------cEEEEEecCCceeEEEeCC
Q 035621          163 DDKNPDDLML---QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-------THLSTVTFPCAIMGLALDP  232 (387)
Q Consensus       163 ~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~v~~~~~~~  232 (387)
                         ...+.++   ..+.....-+..+.+....+...++..+.+|.++--++...       .....+.....+..+....
T Consensus       574 ---~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~  650 (805)
T PRK05560        574 ---TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTD  650 (805)
T ss_pred             ---CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeC
Confidence               1122222   12222222333444432123468899999999887765432       2222333344555555555


Q ss_pred             CCCeEEEEccCCcEEEEecccccccc-ccccceeEeecccccccEEEE-EEecCCCEEEEEeCCCcEEEEECC
Q 035621          233 TETDFFAAGSDGLIYKGLLKYQSRQQ-MHKGQELVTLANRHDGVVVSV-MMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       233 ~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      ....++..+..|.+..+....-.... ...+.....+  .....|.++ .+.+++.+++..+..|.++...+.
T Consensus       651 ~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L--~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~  721 (805)
T PRK05560        651 GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKL--REGDEVVSMDVVREDSQEILTVTENGYGKRTPVS  721 (805)
T ss_pred             CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccC--CCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHH
Confidence            56678888888888877665421111 1112222222  122334444 444444478888888988877654

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.72  E-value=1.2  Score=24.51  Aligned_cols=37  Identities=14%  Similarity=0.137  Sum_probs=27.5

Q ss_pred             ceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEe
Q 035621          194 SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLAL  230 (387)
Q Consensus       194 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~  230 (387)
                      .++++...+++|.++|..+++.+..+........++|
T Consensus         5 ~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         5 KLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            3455555688999999999998888876555555555

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.46  E-value=7.1  Score=32.22  Aligned_cols=198  Identities=12%  Similarity=0.105  Sum_probs=119.2

Q ss_pred             CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621           84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      .....++-.|||..-+++...+.|--.|..+|+....--+.......+...||+..-++-+.. -|.-.|-         
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dp---------  131 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDP---------  131 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecC---------
Confidence            456678888999999999888999999999998766554555666788888888755554332 3333332         


Q ss_pred             CCCCCccceEeee----ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeE
Q 035621          164 DKNPDDLMLQKFV----AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDF  237 (387)
Q Consensus       164 ~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l  237 (387)
                          +...+.++.    ..........|.+.+  ++-+++.. |.---.|.. ...+..+.  .......++..|+|...
T Consensus       132 ----kt~evt~f~lp~~~a~~nlet~vfD~~G--~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvw  203 (353)
T COG4257         132 ----KTLEVTRFPLPLEHADANLETAVFDPWG--NLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVW  203 (353)
T ss_pred             ----cccceEEeecccccCCCcccceeeCCCc--cEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEE
Confidence                111222221    223455566666553  66666642 111111111 11233333  34567788999999998


Q ss_pred             EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621          238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  306 (387)
                      ++.-.++.|-..|...........       .......-..+--+|.|+.-+|-...+.+..||..+..
T Consensus       204 yaslagnaiaridp~~~~aev~p~-------P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         204 YASLAGNAIARIDPFAGHAEVVPQ-------PNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             EEeccccceEEcccccCCcceecC-------CCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence            888788888877776642221111       11112223445556778887887778888888876654

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.41  E-value=6.5  Score=34.90  Aligned_cols=108  Identities=12%  Similarity=0.109  Sum_probs=64.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC
Q 035621          123 AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD  202 (387)
Q Consensus       123 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  202 (387)
                      ...++|.++.|++|.+.+++--.+.+|.+++....        +.......+.+.....|....|..+   .-++.-+..
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d--------~~~l~~~~~ck~k~~~IlGF~W~~s---~e~A~i~~~  132 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD--------NSQLEYTQECKTKNANILGFCWTSS---TEIAFITDQ  132 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCC--------chhhHHHHHhccCcceeEEEEEecC---eeEEEEecC
Confidence            34679999999999999999999999999887210        0111122223334455777777655   334444433


Q ss_pred             CcEEEEeCCCC-cEEEEEe-cCCceeEEEeCCCCCeEEEEcc
Q 035621          203 CTCKFWRLLNG-THLSTVT-FPCAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       203 ~~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~  242 (387)
                      | +-+|-.... ..++..+ +...|+-..|.++.+.++.++.
T Consensus       133 G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  133 G-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             C-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            3 455543321 1222222 4566777778887766555443

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=91.27  E-value=18  Score=36.51  Aligned_cols=175  Identities=14%  Similarity=0.129  Sum_probs=95.7

Q ss_pred             CEEEEEeC---------CCcEEEEeCCcccccCCCCCCCCccceEe--eeccCCCeEEEEEeeCCCCceEEEEeCCCcEE
Q 035621          138 SLLISGGD---------DGVIATVPIFQLVDEHTDDKNPDDLMLQK--FVAHNDSVTAITCCIGSFNSIIISCSMDCTCK  206 (387)
Q Consensus       138 ~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~  206 (387)
                      .++++|..         .|.+.++|+-+.......+  .+...++.  .....++|..++=. .   .+|+++ ....|.
T Consensus      1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP--~t~~KlKel~~eE~KGtVsavceV-~---G~l~~~-~GqKI~ 1119 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKP--FTKNKLKELYIEEQKGTVSAVCEV-R---GHLLSS-QGQKII 1119 (1366)
T ss_pred             ceEEEEEeecccccccCcccEEEEEEEEecCCCCCC--cccceeeeeehhhcccceEEEEEe-c---cEEEEc-cCcEEE
Confidence            36777642         3889999984422211111  11111222  23345677766532 2   245544 346799


Q ss_pred             EEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeeccc-ccccEEEEEEecC
Q 035621          207 FWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANR-HDGVVVSVMMMNE  284 (387)
Q Consensus       207 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~  284 (387)
                      +|++.....+.-+. ..-++.-.....-.++|+.|.--..|.+.-+....       ..+..+.+. ..-.+.++.|--|
T Consensus      1120 v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep-------~rlsL~srd~~~l~v~s~EFLVd 1192 (1366)
T KOG1896|consen 1120 VRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEP-------YRLSLLSRDFEPLNVYSTEFLVD 1192 (1366)
T ss_pred             EEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCc-------eEEEEeecCCchhhceeeeeEEc
Confidence            99994443332222 22233333333445677777777777776665422       111111111 1234777888766


Q ss_pred             CC--EEEEEeCCCcEEEEECC--------CccEEEEeecccCCCceeEEEEe
Q 035621          285 GK--NLVSAAEDGSVYIWEIE--------KRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       285 ~~--~l~s~~~dg~i~iwd~~--------~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      |.  +++++..|+.|++|-..        ..++++.-.-|....++++...+
T Consensus      1193 g~~L~flvsDa~rNi~vy~Y~Pe~~eS~~G~RLv~radfhvg~~vs~m~~lp 1244 (1366)
T KOG1896|consen 1193 GSNLSFLVSDADRNIHVYMYAPENIESLSGQRLVRRADFHVGAHVSTMFRLP 1244 (1366)
T ss_pred             CCeeEEEEEcCCCcEEEEEeCCCCccccCcceeeeeeeeEeccceeeeEecc
Confidence            65  67888999999887532        24666666667666777776665

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=91.15  E-value=11  Score=33.99  Aligned_cols=32  Identities=22%  Similarity=0.446  Sum_probs=25.4

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          273 DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       273 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      ...|.+++..+..+.+++...+|.|.+|++..
T Consensus       189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            34499999999889999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.97  E-value=7.4  Score=35.23  Aligned_cols=26  Identities=19%  Similarity=0.157  Sum_probs=20.1

Q ss_pred             CeeeEEeccCCCEEEEecCCCcEEEE
Q 035621           85 PVAPLATTADGSYLFTGGLSGNVYAI  110 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~dg~i~i~  110 (387)
                      .|..+..++.|..++..+.+|.+.++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEE
Confidence            56778889999999988888854443

>TIGR01063 gyrA DNA gyrase, A subunit

Probab=90.84  E-value=18  Score=35.75  Aligned_cols=235  Identities=14%  Similarity=0.225  Sum_probs=114.0

Q ss_pred             CCCCCeEEEEEccCCCc-------c--cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeC---CC------Ccee---
Q 035621           60 TTGSGSVHLYNLWSSTP-------L--HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISV---PK------GDIL---  118 (387)
Q Consensus        60 ~~~d~~v~vw~~~~~~~-------~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~---~~------~~~~---  118 (387)
                      -+.+|.++--+..+...       .  ..++....+..+........++..+..|.+.....   +.      |..+   
T Consensus       502 lS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~l  581 (800)
T TIGR01063       502 LSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNL  581 (800)
T ss_pred             EcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHh
Confidence            56778877765533211       1  11222344544444455566666677787665543   22      1222   


Q ss_pred             EEccCCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE
Q 035621          119 RSFSAHDKPVSCLKIS--PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII  196 (387)
Q Consensus       119 ~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  196 (387)
                      ..+.....-+.++...  .+...++..+.+|.++-.++.......     ..+.....+.. .+.+..+.....  ...+
T Consensus       582 l~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~-----r~G~~aiklke-~D~lv~v~~~~~--~d~l  653 (800)
T TIGR01063       582 LPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIR-----SNGIIAIKLDD-GDELISVRLTSG--DDEV  653 (800)
T ss_pred             ccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhc-----cCCcccccCCC-CCEEEEEEEeCC--CCEE
Confidence            1222222334445433  245689999999999988874432111     11111222222 234444433333  2456


Q ss_pred             EEEeCCCcEEEEeCCC---------CcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc-cccceeE
Q 035621          197 ISCSMDCTCKFWRLLN---------GTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-HKGQELV  266 (387)
Q Consensus       197 ~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~  266 (387)
                      +..+..|.+..+....         |.....+.....|.++..-.++..++..+..|.++...+..-..... ..+....
T Consensus       654 ll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~i  733 (800)
T TIGR01063       654 MLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSI  733 (800)
T ss_pred             EEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEE
Confidence            6666677766555432         11222222334455555444556788888899888887654222111 1111121


Q ss_pred             eecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          267 TLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       267 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      .+ ......+..+....+...++..+.+|.+..++..
T Consensus       734 kl-~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~  769 (800)
T TIGR01063       734 KI-TDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ  769 (800)
T ss_pred             Ec-cCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence            11 1122333333333333445555666766666654

This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.

>TIGR01063 gyrA DNA gyrase, A subunit

Probab=90.32  E-value=20  Score=35.44  Aligned_cols=207  Identities=12%  Similarity=0.104  Sum_probs=109.6

Q ss_pred             eccCCCEEEEecCCCcEEEEeCCCCce---------eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           91 TTADGSYLFTGGLSGNVYAISVPKGDI---------LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        91 ~~~~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                      +-++...+++-+.+|.|+-.++.+-..         ...++. ...+..+........++..+..|.+...+........
T Consensus       492 li~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~  570 (800)
T TIGR01063       492 LIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEAS  570 (800)
T ss_pred             ccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCC
Confidence            344556778888899888776543211         111222 2344444444455667777777877666553332211


Q ss_pred             CCCCCCCccce---EeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-------EEEEecCCceeEEEeC
Q 035621          162 TDDKNPDDLML---QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-------LSTVTFPCAIMGLALD  231 (387)
Q Consensus       162 ~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~~~~v~~~~~~  231 (387)
                      .   ...+.++   ..+.....-+..+.+....+...++..+.+|.++-.++.....       ...+.....+..+...
T Consensus       571 r---~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~  647 (800)
T TIGR01063       571 R---TAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLT  647 (800)
T ss_pred             c---CCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEe
Confidence            1   1122222   2222222334444433223346889999999999887654321       1122234455555555


Q ss_pred             CCCCeEEEEccCCcEEEEeccccccc-cccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          232 PTETDFFAAGSDGLIYKGLLKYQSRQ-QMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       232 ~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      .....++..+..|.+..+....-... ....+.....+  .....|.++..-++...++..+..|.++...+.
T Consensus       648 ~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L--~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~  718 (800)
T TIGR01063       648 SGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKL--KNEDFVVSLLVVSEESYLLIVTENGYGKRTSIE  718 (800)
T ss_pred             CCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccC--CCCCEEEEEEEeccccEEEEEecCCcEEEEEHH
Confidence            55567888888888877766432111 11112222222  223445555554555678888889988887654

This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=90.29  E-value=9.7  Score=31.80  Aligned_cols=156  Identities=7%  Similarity=0.036  Sum_probs=93.5

Q ss_pred             ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621           79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA--HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      .+..++-+..+.++.  ++.+.+..+.-+++.|+.+......+..  -.+--.++..  .|++..++..|.-+.+.|+..
T Consensus        82 ~i~~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsd  157 (370)
T COG5276          82 VINARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSD  157 (370)
T ss_pred             EEehhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCC
Confidence            333455666777765  4666777777799999977643332221  1133344444  578888888777778889844


Q ss_pred             ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc---EEEEEecCCceeEEEeCCC
Q 035621          157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT---HLSTVTFPCAIMGLALDPT  233 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~  233 (387)
                      .         ......-+.......-..++.+    |++-..+..|+-+.+-|+....   .+........+.++..+++
T Consensus       158 p---------ssP~lagrya~~~~d~~~v~IS----Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn  224 (370)
T COG5276         158 P---------SSPQLAGRYALPGGDTHDVAIS----GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN  224 (370)
T ss_pred             C---------CCceeeeeeccCCCCceeEEEe----cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC
Confidence            2         1122222333333333455554    3677777788999999998654   3444445557888888877


Q ss_pred             CCeEEEEccCCcEEEEeccc
Q 035621          234 ETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       234 ~~~l~~~~~dg~i~i~d~~~  253 (387)
                      ..+++....  -+.+-|...
T Consensus       225 r~y~vvy~e--gvlivd~s~  242 (370)
T COG5276         225 RAYLVVYDE--GVLIVDVSG  242 (370)
T ss_pred             eeEEEEccc--ceEEEecCC
Confidence            666655443  344444443

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.29  E-value=5.4  Score=28.89  Aligned_cols=107  Identities=7%  Similarity=0.054  Sum_probs=68.7

Q ss_pred             ceEEEEeCCCcEEEEeCCC--------CcEEEEEecCCceeEEEeCC-----CCCeEEEEccCCcEEEEecccccccccc
Q 035621          194 SIIISCSMDCTCKFWRLLN--------GTHLSTVTFPCAIMGLALDP-----TETDFFAAGSDGLIYKGLLKYQSRQQMH  260 (387)
Q Consensus       194 ~~l~s~~~d~~i~iwd~~~--------~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~  260 (387)
                      .-|+.++.-|+|.|++...        ...+..+.....|++++-.+     ....|+.|+ ...+..||+......   
T Consensus        11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~---   86 (136)
T PF14781_consen   11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDL---   86 (136)
T ss_pred             eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchh---
Confidence            5677777888999998763        33566777788888886554     234455554 557889998763322   


Q ss_pred             ccceeEeecccccccEEEEEEec----CCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          261 KGQELVTLANRHDGVVVSVMMMN----EGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                             +.+.-...|+++.+-.    +..+++.| .+..|.-||.+..+..++..
T Consensus        87 -------Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtVt  134 (136)
T PF14781_consen   87 -------FYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTVT  134 (136)
T ss_pred             -------hhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEec
Confidence                   1223345677776632    23344444 57789889988777776654

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.14  E-value=11  Score=38.19  Aligned_cols=82  Identities=16%  Similarity=0.238  Sum_probs=52.3

Q ss_pred             CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc--------------cceeEeecccccccEEEEEEecCCCE
Q 035621          222 PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK--------------GQELVTLANRHDGVVVSVMMMNEGKN  287 (387)
Q Consensus       222 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~~~~~~~~~~~~v~~~~~s~~~~~  287 (387)
                      +..|+++....+|+.+++| .||.++-.-......+...+              ...+..+...+..+|..+.....-..
T Consensus       178 g~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~I  256 (1311)
T KOG1900|consen  178 GVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNI  256 (1311)
T ss_pred             CceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccce
Confidence            5678899977777655554 55555433332222111100              01122222356789999999988889


Q ss_pred             EEEEeCCCcEEEEECCC
Q 035621          288 LVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       288 l~s~~~dg~i~iwd~~~  304 (387)
                      +.+-+..|+|.+|++..
T Consensus       257 lY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  257 LYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             eeeeccCceEEEEEccC
Confidence            99999999999999987

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.06  E-value=0.042  Score=48.15  Aligned_cols=137  Identities=9%  Similarity=0.044  Sum_probs=88.0

Q ss_pred             eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCcccccCCCC
Q 035621           86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLL-ISGGDDGVIATVPIFQLVDEHTDD  164 (387)
Q Consensus        86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~  164 (387)
                      .....|.+.+..++.++.+..+..||- .++...... ..+....++|..++..+ +.+-..+.+.+||+.+....    
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq----  110 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ----  110 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH----
Confidence            334567787777888888888999984 455444443 34555678888777644 44567789999999432110    


Q ss_pred             CCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEE
Q 035621          165 KNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFF  238 (387)
Q Consensus       165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~  238 (387)
                            .+..--.|....  +.|++..  ..++.+...|.+.|++..+.+.+.... +...++++++.+.+..+.
T Consensus       111 ------qLE~gg~~s~sl--l~wsKg~--~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  111 ------QLESGGTSSKSL--LAWSKGT--PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             ------HHhccCcchHHH--HhhccCC--ccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence                  000000111111  5566553  667777788999999988776665555 778889999988765443

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=89.53  E-value=6.7  Score=35.45  Aligned_cols=32  Identities=13%  Similarity=0.305  Sum_probs=24.0

Q ss_pred             CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC
Q 035621          180 DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG  213 (387)
Q Consensus       180 ~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  213 (387)
                      ..|..++..+..  +.+++.+.+|.|.+|++..+
T Consensus       190 ~~I~~v~~d~~r--~~ly~l~~~~~Iq~w~l~~~  221 (422)
T PF08801_consen  190 PKIVQVAVDPSR--RLLYTLTSDGSIQVWDLGPG  221 (422)
T ss_dssp             --EEEEEEETTT--TEEEEEESSE-EEEEEE-SS
T ss_pred             hceeeEEecCCc--CEEEEEeCCCcEEEEEEeCC
Confidence            348888887764  89999999999999999853

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.31  E-value=1  Score=42.25  Aligned_cols=86  Identities=15%  Similarity=0.119  Sum_probs=44.6

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCccc------ccCCCCCCCCccceE--------eeeccCCCeEEEEEee--CCCCceEEE
Q 035621          135 PDGSLLISGGDDGVIATVPIFQLV------DEHTDDKNPDDLMLQ--------KFVAHNDSVTAITCCI--GSFNSIIIS  198 (387)
Q Consensus       135 ~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~--~~~~~~l~s  198 (387)
                      ++...++.+..||.+.........      .............+.        ...........+++..  -....++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            366788888999998888764311      000000000000000        0011123344455544  112479999


Q ss_pred             EeCCCcEEEEeCCCCcEEEEEe
Q 035621          199 CSMDCTCKFWRLLNGTHLSTVT  220 (387)
Q Consensus       199 ~~~d~~i~iwd~~~~~~~~~~~  220 (387)
                      .+.|+++|+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999977664

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.28  E-value=22  Score=34.50  Aligned_cols=89  Identities=13%  Similarity=0.172  Sum_probs=56.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCC-CCCCCCccceEee--------eccCCCeEEEEEeeCC-CCc
Q 035621          125 DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHT-DDKNPDDLMLQKF--------VAHNDSVTAITCCIGS-FNS  194 (387)
Q Consensus       125 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~-~~~  194 (387)
                      .-.|..+.++|+|++++..|..| |.|-.+.+.+.... ..........+.+        ..+...|..+.|+|.+ ++.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            34688999999999999988855 45555533221110 0000111111111        1344578899999986 357


Q ss_pred             eEEEEeCCCcEEEEeCCCCc
Q 035621          195 IIISCSMDCTCKFWRLLNGT  214 (387)
Q Consensus       195 ~l~s~~~d~~i~iwd~~~~~  214 (387)
                      .|+.-..|+++|+||+....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            88888899999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=88.79  E-value=13  Score=31.12  Aligned_cols=189  Identities=8%  Similarity=0.046  Sum_probs=100.3

Q ss_pred             ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-
Q 035621           41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD-  116 (387)
Q Consensus        41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-  116 (387)
                      +..+.++.+..+.      +..+.-+++.|+.+......+.   ..+--.+  +.-.|++..++..+.-+.+.|+.+.+ 
T Consensus        89 ~~Dv~vse~yvyv------ad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpss  160 (370)
T COG5276          89 FADVRVSEEYVYV------ADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSS  160 (370)
T ss_pred             hheeEecccEEEE------EcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCC
Confidence            4455555544444      3466679999997765443333   2232333  34467888888866668888886543 


Q ss_pred             --eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCc
Q 035621          117 --ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS  194 (387)
Q Consensus       117 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  194 (387)
                        +..........-..++.+  |++-..+..|+-+.+.|+.+.          ....+.........+.++..+++.  .
T Consensus       161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp----------~sPvli~~~n~g~g~~sv~vsdnr--~  226 (370)
T COG5276         161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNP----------HSPVLIGSYNTGPGTYSVSVSDNR--A  226 (370)
T ss_pred             ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCC----------CCCeEEEEEecCCceEEEEecCCe--e
Confidence              333444444444566664  677888889999999999542          111222222222366777666542  3


Q ss_pred             eEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEE-EeCCCCCeEEEEccCCcEEEEeccc
Q 035621          195 IIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGL-ALDPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       195 ~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~-~~~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                      +++.  .+.-+.+-|....+....+.  ....+.++ .+.-.+++......+.-+.+.|+..
T Consensus       227 y~vv--y~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn  286 (370)
T COG5276         227 YLVV--YDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN  286 (370)
T ss_pred             EEEE--cccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccC
Confidence            3333  23346666766555433332  11111111 2222344444444444444444443

>smart00564 PQQ beta-propeller repeat

Probab=88.53  E-value=1.3  Score=22.76  Aligned_cols=25  Identities=12%  Similarity=0.407  Sum_probs=21.6

Q ss_pred             EEEEEeCCCcEEEEECCCccEEEEe
Q 035621          287 NLVSAAEDGSVYIWEIEKRQVVMVL  311 (387)
Q Consensus       287 ~l~s~~~dg~i~iwd~~~~~~~~~~  311 (387)
                      .++.++.+|.+..+|.++|+.+.++
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5777888999999999999988764

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=88.33  E-value=13  Score=35.74  Aligned_cols=245  Identities=10%  Similarity=-0.072  Sum_probs=0.0

Q ss_pred             cCCCCCceeEEEcCccceeeeccccCCCC--------------CeEEEEEc--cCCCcccccCCCCCeeeEEecc-----
Q 035621           35 SGSRSPRRGLTFAGKPFIAASHISPTTGS--------------GSVHLYNL--WSSTPLHNIPVPEPVAPLATTA-----   93 (387)
Q Consensus        35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d--------------~~v~vw~~--~~~~~~~~~~~~~~v~~~~~~~-----   93 (387)
                      +.+..+|.|++..| .-++.+.-...+..              |.+.+..+  .+.+.+..+.....+.|+.+.|     
T Consensus       451 ~~~~~rilC~a~~P-~P~l~~es~pssrs~~g~lp~G~~~~~~gq~~i~s~~~stP~~v~cf~~~~r~lcm~y~Ps~ee~  529 (925)
T KOG3522|consen  451 QVCSARILCTASVP-EPYLNSESNPSSRSAHGRLPAGSCTHQMGQIAIESVGRSTPNGVGCFSFGGRNLCMSYLPSLEEL  529 (925)
T ss_pred             hccccccceeecCC-cccccCCCCCcccccccccCCCcccccccceeeeeccCCCCCcccceeecccccchhhCcchhhc


Q ss_pred             ----------------CCCEEEEecCCCcEEEEeCCCC----ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621           94 ----------------DGSYLFTGGLSGNVYAISVPKG----DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP  153 (387)
Q Consensus        94 ----------------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  153 (387)
                                      +...+..|+.++.+.++.-..+    ............+.++.+++..  +..|.-||++-.+-
T Consensus       530 ~~sp~a~P~~~~~~as~~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S--lgagl~dgt~a~y~  607 (925)
T KOG3522|consen  530 TQSPTAVPETPDTQASPHPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS--LGAGLIDGTLAVYG  607 (925)
T ss_pred             cCCCCCCCCCcccccCCCCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccc--cccCccCCcccccc


Q ss_pred             CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceeEEE
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIMGLA  229 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~  229 (387)
                      -       .........+...+.....++.+.++..+     ++-++.+|.+.++...+........    +...|+++.
T Consensus       608 r-------ap~gSwd~ep~~~~~~g~lPvrsla~~ed-----~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~  675 (925)
T KOG3522|consen  608 R-------APSGSWDGEPNISIPTGSLPVRSLAFQED-----FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHML  675 (925)
T ss_pred             C-------CCCCCCCCCCccccccCCccccchhhhhc-----eeeeecCCceEEEechhccccchhHHHHhhcceEEEEE


Q ss_pred             eCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccc--cEEEEEEecCCCEEEEEeCCCcE
Q 035621          230 LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDG--VVVSVMMMNEGKNLVSAAEDGSV  297 (387)
Q Consensus       230 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i  297 (387)
                      +...+-+++.++.|-..+. +..+-.-.+................  .|....|+  ...|.+++.++..
T Consensus       676 ~~~~gVwvafasG~~~rlf-htetl~hlqd~niaT~vt~~lP~~kllsv~~rl~c--~gl~~V~~~~~l~  742 (925)
T KOG3522|consen  676 YLDNGVWVAFASGDEERLF-HTETLWHLQDSNIATSVTVDLPFGKLLSVPGRLWC--QGLLMVLTSLTLL  742 (925)
T ss_pred             eeCCceEEEEcCCCEEEEe-cccccCCccccccCcceeecCCCcccccCCCcccc--cceeEEeccceeE

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.99  E-value=19  Score=32.15  Aligned_cols=119  Identities=12%  Similarity=0.117  Sum_probs=75.3

Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee----EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL----RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL  157 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  157 (387)
                      ..++|.++.|++|.+.||+--.+.+|.+++....+..    .+.+.....|....|+.+ .-++.....| +-+|...  
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~--  140 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL--  140 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc--
Confidence            4568999999999999999999999999997433322    222333456888999865 4455444433 4566542  


Q ss_pred             cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC
Q 035621          158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG  213 (387)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  213 (387)
                               +....++..+.|...|+--.|+++..=-+|+++-..+++.=+-++++
T Consensus       141 ---------pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  141 ---------PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             ---------hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence                     23445566677888888888888752112223223444444444443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.81  E-value=8.4  Score=29.72  Aligned_cols=102  Identities=8%  Similarity=-0.014  Sum_probs=0.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc-eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA-ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++||.||++.+..+.  .|.|.+..+.. ........................-..+.+....-...--+...     .-
T Consensus        10 l~WS~Dg~laV~t~~--~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-----~~   82 (173)
T PF12657_consen   10 LAWSEDGQLAVATGE--SVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDD-----EE   82 (173)
T ss_pred             eeECCCCCEEEEcCC--eEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceeccccccc-----cc


Q ss_pred             CCCCCeeeEEeccCCC------EEEEecCCCcEEEE
Q 035621           81 PVPEPVAPLATTADGS------YLFTGGLSGNVYAI  110 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~------~l~~~~~dg~i~i~  110 (387)
                      .....+..++|||.|-      +|++-+.++.|.+|
T Consensus        83 ~s~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~  118 (173)
T PF12657_consen   83 ISSSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLY  118 (173)
T ss_pred             cccccEEEEEECCCCCCCCCceEEEEEcCCCeEEEE

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=87.71  E-value=23  Score=32.68  Aligned_cols=161  Identities=11%  Similarity=0.036  Sum_probs=0.0

Q ss_pred             CCCCEEEEE---eCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC
Q 035621          135 PDGSLLISG---GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL  211 (387)
Q Consensus       135 ~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  211 (387)
                      .++-+++..   ...+...++|.             .+.....+.........+...+++  .+++..+  ..++.+|+.
T Consensus       113 ~~gl~~~~~~~~~~~~~~~~iD~-------------~G~Vrw~~~~~~~~~~~~~~l~nG--~ll~~~~--~~~~e~D~~  175 (477)
T PF05935_consen  113 EDGLYFVNGNDWDSSSYTYLIDN-------------NGDVRWYLPLDSGSDNSFKQLPNG--NLLIGSG--NRLYEIDLL  175 (477)
T ss_dssp             TT-EEEEEETT--BEEEEEEEET-------------TS-EEEEE-GGGT--SSEEE-TTS---EEEEEB--TEEEEE-TT
T ss_pred             CCcEEEEeCCCCCCCceEEEECC-------------CccEEEEEccCccccceeeEcCCC--CEEEecC--CceEEEcCC


Q ss_pred             CCcEEEEEecCCce----eEEEeCCCCCeEEEEcc-------------CCcEEEEeccccccccccccceeEeeccccc-
Q 035621          212 NGTHLSTVTFPCAI----MGLALDPTETDFFAAGS-------------DGLIYKGLLKYQSRQQMHKGQELVTLANRHD-  273 (387)
Q Consensus       212 ~~~~~~~~~~~~~v----~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-  273 (387)
                       |+.+..+..+...    ..+..-|+|++|+.+..             ...|..+| .++................... 
T Consensus       176 -G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~  253 (477)
T PF05935_consen  176 -GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVL  253 (477)
T ss_dssp             ---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTG
T ss_pred             -CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCccccccc


Q ss_pred             -----------------ccEEEEEEec-CCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          274 -----------------GVVVSVMMMN-EGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       274 -----------------~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                                       -.++++.+.+ ++.+|+|+-.-..|...|.++++....+..+
T Consensus       254 ~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  254 KPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             GT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             ccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.67  E-value=3.8  Score=36.23  Aligned_cols=174  Identities=16%  Similarity=0.203  Sum_probs=96.0

Q ss_pred             eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc-CCCeE-EEEEeeCCCCce
Q 035621          118 LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH-NDSVT-AITCCIGSFNSI  195 (387)
Q Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~-~~~~~~~~~~~~  195 (387)
                      +..+......+..+-..|||+.+..-+. ..+.++++.+..-..       .+....-.+. ...|+ .+.....  +.-
T Consensus       213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~-------rkl~~dspg~~~~~Vte~l~lL~G--g~S  282 (733)
T COG4590         213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQI-------RKLVDDSPGDSRHQVTEQLYLLSG--GFS  282 (733)
T ss_pred             hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccch-------hhhhhcCCCchHHHHHHHHHHHhC--cee
Confidence            3334445567888999999998877665 678888874311100       0000000000 00111 1111111  356


Q ss_pred             EEEEeCCCcEEEE-eCCCCc-----EEEEEec-CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEee
Q 035621          196 IISCSMDCTCKFW-RLLNGT-----HLSTVTF-PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL  268 (387)
Q Consensus       196 l~s~~~d~~i~iw-d~~~~~-----~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  268 (387)
                      ++.++.||-|.-| |.+.+.     .++.++. +.++..+.-..+.+-+++-..+|.+..+......        .+. +
T Consensus       283 LLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~--------~lL-~  353 (733)
T COG4590         283 LLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEK--------LLL-F  353 (733)
T ss_pred             EEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCc--------cee-h
Confidence            7778888888766 554322     2223332 2444444444445667777778888777554311        111 1


Q ss_pred             cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          269 ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       269 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                       ..--..+.-+++||.+.++++- ..|.++++.+++..+.-++.
T Consensus       354 -~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Peisws  395 (733)
T COG4590         354 -ERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPEISWS  395 (733)
T ss_pred             -hhhhcCcceeeeCcccchheee-cCCceEEEEecCCCCCccHH
Confidence             1122356678999999999875 45789999998876654443

>PRK05560 DNA gyrase subunit A; Validated

Probab=87.11  E-value=34  Score=33.99  Aligned_cols=235  Identities=11%  Similarity=0.168  Sum_probs=112.3

Q ss_pred             CCCCCeEEEEEccCCCc-------c--cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEe---CCC------Ccee---
Q 035621           60 TTGSGSVHLYNLWSSTP-------L--HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAIS---VPK------GDIL---  118 (387)
Q Consensus        60 ~~~d~~v~vw~~~~~~~-------~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d---~~~------~~~~---  118 (387)
                      -+.+|.|+--.+.+...       .  ..++....+..+........|+..+..|.+....   ++.      |..+   
T Consensus       504 lS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~l  583 (805)
T PRK05560        504 LTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNL  583 (805)
T ss_pred             EeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHh
Confidence            45777777665533211       1  1112233444444445556666666778666554   332      2222   


Q ss_pred             EEccCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE
Q 035621          119 RSFSAHDKPVSCLKISP--DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII  196 (387)
Q Consensus       119 ~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  196 (387)
                      ..+.....-+..+.+..  +...++..+.+|.++--++.......     ..+.....+.. .+.+..+.....  ...+
T Consensus       584 l~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~-----r~G~~~ikLke-~D~lv~v~~~~~--~d~l  655 (805)
T PRK05560        584 LPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIR-----SNGIIAINLDE-GDELIGVRLTDG--DDDI  655 (805)
T ss_pred             cCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcc-----cCCceeeccCC-CCEEEEEEEeCC--CCEE
Confidence            11222233344555552  56789999999999888774332111     11222223332 233434433333  2456


Q ss_pred             EEEeCCCcEEEEeCCCC---------cEEEEEecCCceeEE-EeCCCCCeEEEEccCCcEEEEeccccccccc-ccccee
Q 035621          197 ISCSMDCTCKFWRLLNG---------THLSTVTFPCAIMGL-ALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-HKGQEL  265 (387)
Q Consensus       197 ~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~  265 (387)
                      +..+..|.+..+....-         .....+.....|..+ .+.+++.+++..+..|.++...+........ ..+...
T Consensus       656 ll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~  735 (805)
T PRK05560        656 LLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGVIT  735 (805)
T ss_pred             EEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEEe
Confidence            66667787766654321         122222223334433 3444444788888889888877654222111 011112


Q ss_pred             EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      ..+ ......+..+........++..+.+|.+..++..
T Consensus       736 lkl-~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~  772 (805)
T PRK05560        736 IKI-TEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS  772 (805)
T ss_pred             eec-cCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH
Confidence            111 1112333333222233345555566766666654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=87.11  E-value=12  Score=35.63  Aligned_cols=91  Identities=12%  Similarity=0.166  Sum_probs=58.0

Q ss_pred             EeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCE
Q 035621          208 WRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKN  287 (387)
Q Consensus       208 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  287 (387)
                      .|+-.|+....+.|.+.|--+.++..+..|+.-...-.+.++|+.+..+...             -.-.+-+.|-|....
T Consensus       323 vdli~g~~~~~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmi-------------lnfcsymqwvp~sdv  389 (1636)
T KOG3616|consen  323 VDLIGGQNEGFINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMI-------------LNFCSYMQWVPGSDV  389 (1636)
T ss_pred             eecccCcccccccccccccceeccchhhhhhcccccceeEEEEcccchHHHH-------------HHHhhhheeccCcce
Confidence            4444555555566777777777777776777666677788888876321110             122456789998888


Q ss_pred             EEEEeCCCcEEEE-ECCCccEEEEee
Q 035621          288 LVSAAEDGSVYIW-EIEKRQVVMVLK  312 (387)
Q Consensus       288 l~s~~~dg~i~iw-d~~~~~~~~~~~  312 (387)
                      ++.-+.|. +.|| +++..+.+..++
T Consensus       390 ivaqn~dn-l~iwyn~d~peqvt~~k  414 (1636)
T KOG3616|consen  390 IVAQNGDN-LCIWYNIDAPEQVTMFK  414 (1636)
T ss_pred             EEecCCCc-eEEEecCCcchhheeeE
Confidence            88776665 5555 666666666554

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=86.93  E-value=23  Score=31.84  Aligned_cols=140  Identities=14%  Similarity=0.189  Sum_probs=80.2

Q ss_pred             eccccCCCCCeEEEEEccCCC-----cccccCCCCCeeeEEecc-----CCCEEEEecCCCcEEEEeCCC--Cc------
Q 035621           55 SHISPTTGSGSVHLYNLWSST-----PLHNIPVPEPVAPLATTA-----DGSYLFTGGLSGNVYAISVPK--GD------  116 (387)
Q Consensus        55 ~~~~~~~~d~~v~vw~~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~--~~------  116 (387)
                      ..++.|+..|.++||+...+.     .+...+...+|..+..-.     +...||+ -.-..+.+|.+..  +.      
T Consensus        38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~  116 (418)
T PF14727_consen   38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQ  116 (418)
T ss_pred             cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcE
Confidence            456668999999999985543     333444667888777543     2234544 3556788887721  11      


Q ss_pred             -eeEEccCCC--CCeEEEEEcC----C-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEe
Q 035621          117 -ILRSFSAHD--KPVSCLKISP----D-GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC  188 (387)
Q Consensus       117 -~~~~~~~~~--~~v~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  188 (387)
                       .+..+..|.  .....++.-|    . ..++.+-+.||.+.+|+-..             .....+....--...+.++
T Consensus       117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~-------------~~f~~~lp~~llPgPl~Y~  183 (418)
T PF14727_consen  117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES-------------FAFSRFLPDFLLPGPLCYC  183 (418)
T ss_pred             EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc-------------EEEEEEcCCCCCCcCeEEe
Confidence             111222222  2223333322    2 35788899999999997622             1111111111112235566


Q ss_pred             eCCCCceEEEEeCCCcEEEEeC
Q 035621          189 IGSFNSIIISCSMDCTCKFWRL  210 (387)
Q Consensus       189 ~~~~~~~l~s~~~d~~i~iwd~  210 (387)
                      +..  +.|++++.+..+..|..
T Consensus       184 ~~t--Dsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  184 PRT--DSFVTASSSWTLECYKY  203 (418)
T ss_pred             ecC--CEEEEecCceeEEEecH
Confidence            664  67888888888888865

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=86.77  E-value=14  Score=31.14  Aligned_cols=96  Identities=17%  Similarity=0.245  Sum_probs=59.8

Q ss_pred             CCcEEEEeCCCCceeEeccCCCCCceeEEEc-CccceeeeccccCC-CCCeEEEEEccCCCccccc-----CCCCCeeeE
Q 035621           17 EGPITAYNPSSGAILAHFSGSRSPRRGLTFA-GKPFIAASHISPTT-GSGSVHLYNLWSSTPLHNI-----PVPEPVAPL   89 (387)
Q Consensus        17 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~-~d~~v~vw~~~~~~~~~~~-----~~~~~v~~~   89 (387)
                      -..|++||..+.+...--.+-.+.|+++.|. .+..+.+..+...+ ....+..||..+......-     ..+++|..+
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence            4569999998777666555667789999997 45555555444444 6778999998776432211     235778887


Q ss_pred             Eecc-CCC-EEEEec-CCC--cEEEEeC
Q 035621           90 ATTA-DGS-YLFTGG-LSG--NVYAISV  112 (387)
Q Consensus        90 ~~~~-~~~-~l~~~~-~dg--~i~i~d~  112 (387)
                      .+.. |+. ..+.|. .+|  .|..||-
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dG  122 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDG  122 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcC
Confidence            7754 333 333433 223  4555653

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=86.74  E-value=16  Score=29.94  Aligned_cols=85  Identities=14%  Similarity=0.096  Sum_probs=47.2

Q ss_pred             CCceeEEEeCCCCCeEEEEccCCcE-EEEeccccccccccccceeEeecc-----cccccEEEEEEecCCCEEEEEeCCC
Q 035621          222 PCAIMGLALDPTETDFFAAGSDGLI-YKGLLKYQSRQQMHKGQELVTLAN-----RHDGVVVSVMMMNEGKNLVSAAEDG  295 (387)
Q Consensus       222 ~~~v~~~~~~~~~~~l~~~~~dg~i-~i~d~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~dg  295 (387)
                      +.--.....-|||+.|++|+..... .+|.-.....     ......++.     .....--.+...|+|++|+.+..+ 
T Consensus       117 ~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~-----~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-  190 (243)
T PF07250_consen  117 GRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP-----GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-  190 (243)
T ss_pred             CCccccceECCCCCEEEEeCcCCCcccccCCccCCC-----CceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-
Confidence            3334455666899999999887432 3333211100     000000110     011112245567999999988765 


Q ss_pred             cEEEEECCCccEEEEeec
Q 035621          296 SVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       296 ~i~iwd~~~~~~~~~~~~  313 (387)
                       -.|||..+++.++.+..
T Consensus       191 -s~i~d~~~n~v~~~lP~  207 (243)
T PF07250_consen  191 -SIIYDYKTNTVVRTLPD  207 (243)
T ss_pred             -cEEEeCCCCeEEeeCCC
Confidence             46779999988887764

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>smart00564 PQQ beta-propeller repeat

Probab=86.46  E-value=1.7  Score=22.31  Aligned_cols=25  Identities=24%  Similarity=0.513  Sum_probs=20.9

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEec
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHF   34 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~   34 (387)
                      .++.++.+|.+..+|..+|+.+.++
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            6777888999999999999887653

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=86.39  E-value=18  Score=30.75  Aligned_cols=106  Identities=16%  Similarity=0.173  Sum_probs=0.0

Q ss_pred             EEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEE
Q 035621           21 TAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFT  100 (387)
Q Consensus        21 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  100 (387)
                      .++|+.+++.+.+   .-.-..+-.|..+......     +..|.+..+|.++|+.......++....++|.  |.++++
T Consensus       188 ~vidv~s~evl~~---GLsmPhSPRWhdgrLwvld-----sgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvV  257 (335)
T TIGR03032       188 CVIDIPSGEVVAS---GLSMPHSPRWYQGKLWLLN-----SGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFV  257 (335)
T ss_pred             EEEEeCCCCEEEc---CccCCcCCcEeCCeEEEEE-----CCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEE


Q ss_pred             ecCCCc--------------------EEEEeCCCCceeEEcc--CCCCCeEEEEEcCC
Q 035621          101 GGLSGN--------------------VYAISVPKGDILRSFS--AHDKPVSCLKISPD  136 (387)
Q Consensus       101 ~~~dg~--------------------i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~  136 (387)
                      |-..-.                    |.+.|+++|..+..++  +--..+..++.-|.
T Consensus       258 gmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg  315 (335)
T TIGR03032       258 GLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG  315 (335)
T ss_pred             EeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.92  E-value=27  Score=31.75  Aligned_cols=115  Identities=12%  Similarity=0.014  Sum_probs=59.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC----CCceEEEE
Q 035621          124 HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS----FNSIIISC  199 (387)
Q Consensus       124 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~l~s~  199 (387)
                      .-...+.|+|.|++++|++--..|.|++++........     ..................|+++|+-    .+.+|+..
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~-----~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs  102 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKV-----VFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS  102 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee-----eecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence            34567899999999877665546999988652210000     0000000001135678899999873    22344443


Q ss_pred             e-C---------CCcEEEEeCCCC--c---EEEEEe-c----CCceeEEEeCCCCCeEEEEccC
Q 035621          200 S-M---------DCTCKFWRLLNG--T---HLSTVT-F----PCAIMGLALDPTETDFFAAGSD  243 (387)
Q Consensus       200 ~-~---------d~~i~iwd~~~~--~---~~~~~~-~----~~~v~~~~~~~~~~~l~~~~~d  243 (387)
                      . .         ...|.-|.+...  .   ....+. .    ...-..+.|.|||.++++.+..
T Consensus       103 yt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       103 YTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             EeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence            2 1         223444444321  1   111111 1    1234578899999876655543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=85.71  E-value=30  Score=32.16  Aligned_cols=237  Identities=14%  Similarity=0.175  Sum_probs=104.6

Q ss_pred             CCCCCeEEEEEccCCCc---ccccCC-CCCeeeEEeccCC-CEEEEecCCC--cEEEEeCCCCceeEEccCCCCCeEEEE
Q 035621           60 TTGSGSVHLYNLWSSTP---LHNIPV-PEPVAPLATTADG-SYLFTGGLSG--NVYAISVPKGDILRSFSAHDKPVSCLK  132 (387)
Q Consensus        60 ~~~d~~v~vw~~~~~~~---~~~~~~-~~~v~~~~~~~~~-~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~  132 (387)
                      +..+|.+....+.....   +..+.. .....++++..+| .+|+.|+.-|  .+.-+....-+.+..+. .-++|..++
T Consensus       228 ~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~Pi~D~~  306 (504)
T PF10433_consen  228 QDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGPIVDFC  306 (504)
T ss_dssp             EETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----SEEEEE
T ss_pred             EeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCCccceE
Confidence            56888888877654331   222212 3445667766655 4777777555  45555533444555554 357899888


Q ss_pred             EcCC----CC------EEEEEe---CCCcEEEEeCCcccccCCCCCCCCccceEeeeccC--CCeEEEEEeeCCCCceEE
Q 035621          133 ISPD----GS------LLISGG---DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN--DSVTAITCCIGSFNSIII  197 (387)
Q Consensus       133 ~~~~----~~------~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~  197 (387)
                      +.+.    ..      .+++++   .+|.+++..-.-  ..       . ........-.  ..++.+...... +.+|+
T Consensus       307 v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi--~~-------~-~~~~~~~~l~~v~~iW~l~~~~~~-~~~lv  375 (504)
T PF10433_consen  307 VVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGI--GI-------E-GLELASSELPGVTGIWTLKLSSSD-HSYLV  375 (504)
T ss_dssp             EE-TSSSSS-------EEEEEESSGGG-EEEEEEESB--EE-------E---EEEEEEESTEEEEEEE-SSSSS-BSEEE
T ss_pred             EeccccCCCCcccccceEEEEECcCCCCcEEEEeccC--Cc-------e-eeeeeccCCCCceEEEEeeecCCC-ceEEE
Confidence            8531    11      455543   567888874310  00       0 0011111222  223333322211 35666


Q ss_pred             EEeCCCcEEEEeCC---CCcEEEEEecCCceeEEEeCCCCCeEEEEcc---------CCcEEEEecccccccccccccee
Q 035621          198 SCSMDCTCKFWRLL---NGTHLSTVTFPCAIMGLALDPTETDFFAAGS---------DGLIYKGLLKYQSRQQMHKGQEL  265 (387)
Q Consensus       198 s~~~d~~i~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~  265 (387)
                      .+..+ .-+++.+.   ....+.....     . .|..+...|+++.-         ...|++.+....        ...
T Consensus       376 ~S~~~-~T~vl~~~~~d~~e~~~e~~~-----~-~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~--------~~~  440 (504)
T PF10433_consen  376 LSFPN-ETRVLQISEGDDGEEVEEVEE-----D-GFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDG--------KLT  440 (504)
T ss_dssp             EEESS-EEEEEEES----SSEEEEE---------TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSST--------SEE
T ss_pred             EEcCC-ceEEEEEecccCCcchhhhhh-----c-cCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCC--------eEE
Confidence            65554 34455553   2333322210     0 22233333333332         123555554431        122


Q ss_pred             EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc----cCCCceeEEEE
Q 035621          266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE----LAGSISEMVIA  325 (387)
Q Consensus       266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~  325 (387)
                      ..+.......|.+.+..  +.+++.+-.++.+..+.++...........    ....|+++.+.
T Consensus       441 ~~w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~  502 (504)
T PF10433_consen  441 QEWKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIE  502 (504)
T ss_dssp             EEEE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE--
T ss_pred             EEEeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeC
Confidence            22212234455555553  456777777889999999887775444322    45577776654

...

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=85.47  E-value=35  Score=32.70  Aligned_cols=74  Identities=12%  Similarity=0.135  Sum_probs=50.7

Q ss_pred             cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621           78 HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  154 (387)
                      ...+..+.++++.-+|.+..++.+..||.|.+|+....+...... ...+-..+.|...|  |+++.+|+.+.-|.-
T Consensus         9 ~~~k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen    9 RDPKEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKE   82 (1636)
T ss_pred             CCccccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeec
Confidence            333445668888889999999999999999999986554422222 22344556676555  677777777777754

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=85.46  E-value=16  Score=28.85  Aligned_cols=109  Identities=8%  Similarity=-0.014  Sum_probs=69.0

Q ss_pred             EEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621          197 ISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV  276 (387)
Q Consensus       197 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  276 (387)
                      .-.-.+|....+|..+.+++..+..++.-..++.  |+..|+.+.....++.-|.++.....    ...+......-..+
T Consensus       105 ~LTw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~----~v~VT~~g~pv~~L  178 (262)
T COG3823         105 QLTWKEGVAFKYDADTLEELGRFSYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELD----TVQVTDDGVPVSKL  178 (262)
T ss_pred             EEEeccceeEEEChHHhhhhcccccCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcc----eEEEEECCeecccc
Confidence            3344688899999999999998887776666654  55567777766677776665532111    11111111111233


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          277 VSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       277 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      +.+.|- +|...|-.=.+..|..-|.++|+.+..+.
T Consensus       179 NELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wid  213 (262)
T COG3823         179 NELEWV-DGELYANVWQTTRIARIDPDSGRVVAWID  213 (262)
T ss_pred             cceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEE
Confidence            445553 56677766666778888899999888775

>PF01011 PQQ: PQQ enzyme repeat family

Probab=84.89  E-value=3.3  Score=22.36  Aligned_cols=28  Identities=14%  Similarity=0.329  Sum_probs=23.9

Q ss_pred             EEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          287 NLVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       287 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      .+..++.||.|.-.|.++|+.+..++..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            3556689999999999999999998754

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=84.24  E-value=35  Score=31.59  Aligned_cols=270  Identities=16%  Similarity=0.085  Sum_probs=124.4

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEeccCCC-CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--CCCCe
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHFSGSR-SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPV   86 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v   86 (387)
                      .+-.|+.|| +..||..+++.++.-.... .+|..+.-+-.+.     +..|+.+| +.+.+.+..+......  ..+.|
T Consensus       177 ~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-----LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I  249 (671)
T COG3292         177 RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-----LWVGTDQG-VYLQEAEGWRASNWGPMLPSGNI  249 (671)
T ss_pred             cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-----EEEEeccc-eEEEchhhccccccCCCCcchhe
Confidence            455677766 6678888887766554433 4566555443222     22234444 5666554422111111  12334


Q ss_pred             eeEEeccCCCEEEEecCCCcEEEEeCCCCceeE-EccCC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621           87 APLATTADGSYLFTGGLSGNVYAISVPKGDILR-SFSAH--DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        87 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      ..+.-..+| .+-.|+.+|..+ +..+...... ..+.|  -..|.++-...+|. +-+++.+|.+++-+-         
T Consensus       250 ~ll~qD~qG-~lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a---------  317 (671)
T COG3292         250 LLLVQDAQG-ELWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTA---------  317 (671)
T ss_pred             eeeecccCC-CEEEeeccccee-EecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEecc---------
Confidence            444433344 355566666333 3333332222 22222  23456666666665 566666666655332         


Q ss_pred             CCCCCccceEeeeccCC-CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEE
Q 035621          164 DKNPDDLMLQKFVAHND-SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAA  240 (387)
Q Consensus       164 ~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~  240 (387)
                          .......+....+ .+...+..|......+.-...-|.+.+-+-.++..+....  -+..|+..++..++ .+..+
T Consensus       318 ----~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlg  392 (671)
T COG3292         318 ----DWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLG  392 (671)
T ss_pred             ----hhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEE
Confidence                1111111111111 1111111121111111112222344455555666555543  23556666676644 45555


Q ss_pred             ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      +...-+..|+.++.       .........-..++|..+-=.|+++ |..|+.+|.++. +.+.++....+.
T Consensus       393 s~q~GLsrl~n~n~-------~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ln  455 (671)
T COG3292         393 SMQNGLSRLDNKNE-------WAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLN  455 (671)
T ss_pred             ecccchhhhccCCc-------ccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchhcccc
Confidence            55433444554440       1111111223456788888888888 788888886654 445555444443

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=84.12  E-value=36  Score=31.67  Aligned_cols=237  Identities=14%  Similarity=0.088  Sum_probs=105.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCC-----ceeEecc---CCCCCceeEEEcC-----ccceeeeccccCCCCCeEEE
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSG-----AILAHFS---GSRSPRRGLTFAG-----KPFIAASHISPTTGSGSVHL   68 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~---~~~~~v~~~~~~~-----~~~~~~~~~~~~~~d~~v~v   68 (387)
                      ++.+|.|+.++.+..+|.+.|+-++..     .....+.   .....|..++|..     +....+...........+..
T Consensus        49 l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~~~~~~  128 (504)
T PF10433_consen   49 LAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRRTHLVT  128 (504)
T ss_dssp             EEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-EEEEEE
T ss_pred             EEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEecccceeEE
Confidence            578899999999999999999988760     0001110   1244577788764     11122222222222334455


Q ss_pred             EEccCCCccccc-C-----------CCCCeeeEEeccCCCEEEEecCCCcEEEEeC-C--CC-ceeEEccC----CCCCe
Q 035621           69 YNLWSSTPLHNI-P-----------VPEPVAPLATTADGSYLFTGGLSGNVYAISV-P--KG-DILRSFSA----HDKPV  128 (387)
Q Consensus        69 w~~~~~~~~~~~-~-----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~--~~-~~~~~~~~----~~~~v  128 (387)
                      +.+.....+... .           ...+..-+........+++++. + +.+|.. .  .+ .....+..    ...-+
T Consensus       129 y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~ggllV~~~-~-~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (504)
T PF10433_consen  129 YEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGGLLVGGE-N-IIIYKNHLIGSGDYSFLSIPSPPSSSSSLW  206 (504)
T ss_dssp             EE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-SEEEEES-S-EEEEEE------TTEEEEE--H-HHHTS-E
T ss_pred             EeeecccccceeeeeccccccccccCCCccEEEEcCCCCcEEEEECC-E-EEEEecccccccccccccccCCccCCCceE
Confidence            443222211110 0           0111111222111223334332 3 344432 1  11 11112211    12233


Q ss_pred             EEEEE-------cCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc-CCCeEEEEEeeCCCCceEEEEe
Q 035621          129 SCLKI-------SPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH-NDSVTAITCCIGSFNSIIISCS  200 (387)
Q Consensus       129 ~~~~~-------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~  200 (387)
                      .+...       ..++..++.+..+|.+....+...          ........-+. .....++.+..++ +.+++.|+
T Consensus       207 ~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~----------~~~i~i~~~g~~~~~~s~l~~l~~g-~d~lf~gs  275 (504)
T PF10433_consen  207 TSWARPERNISYDKDGDRILLQDEDGDLYLLTLDND----------GGSISITYLGTLCSIASSLTYLKNG-GDYLFVGS  275 (504)
T ss_dssp             EEEEE------SSTTSSEEEEEETTSEEEEEEEEEE----------EEEEEEEEEEE--S-ESEEEEESTT---EEEEEE
T ss_pred             EEEEeccccceecCCCCEEEEEeCCCeEEEEEEEEC----------CCeEEEEEcCCcCChhheEEEEcCC-CEEEEEEE
Confidence            33332       446778999999999988877321          00111222222 4455667766553 34888887


Q ss_pred             CC--CcEEEEeCCCCcEEEEEecCCceeEEEeCCC----CC------eEEEEc---cCCcEEEEec
Q 035621          201 MD--CTCKFWRLLNGTHLSTVTFPCAIMGLALDPT----ET------DFFAAG---SDGLIYKGLL  251 (387)
Q Consensus       201 ~d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~----~~------~l~~~~---~dg~i~i~d~  251 (387)
                      .-  +.+.-|.....+.+..+..-+++..+++.+.    ..      .|++++   .+|.+++..-
T Consensus       276 ~~gds~l~~~~~~~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~  341 (504)
T PF10433_consen  276 EFGDSQLLQISLSNLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN  341 (504)
T ss_dssp             SSS-EEEEEEESESEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred             ecCCcEEEEEeCCCcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Confidence            74  4555555555556666666788888888532    11      455543   3778887644

...

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=83.88  E-value=32  Score=30.81  Aligned_cols=149  Identities=9%  Similarity=0.040  Sum_probs=0.0

Q ss_pred             CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621           84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      +....+..++++.+++.+.....++-||-....-...-......+..+.+.+++..++++..-+.+.--|-         
T Consensus       239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~---------  309 (398)
T PLN00033        239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGT---------  309 (398)
T ss_pred             cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCC---------


Q ss_pred             CCCCCccceEeeeccCCC-----eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceeEEEeCCCC
Q 035621          164 DKNPDDLMLQKFVAHNDS-----VTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIMGLALDPTE  234 (387)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~  234 (387)
                         ........+......     +.++.+.++   ..++.++..|.+... ...++.-....    .......+.|.++ 
T Consensus       310 ---G~~~~~~~f~~~~~~~~~~~l~~v~~~~d---~~~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~-  381 (398)
T PLN00033        310 ---GLTEEDFDFEEADIKSRGFGILDVGYRSK---KEAWAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDD-  381 (398)
T ss_pred             ---CCcccccceeecccCCCCcceEEEEEcCC---CcEEEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCC-


Q ss_pred             CeEEEEccCCcEEEE
Q 035621          235 TDFFAAGSDGLIYKG  249 (387)
Q Consensus       235 ~~l~~~~~dg~i~i~  249 (387)
                      +..++.+.+|.|..|
T Consensus       382 ~~g~~~G~~G~il~~  396 (398)
T PLN00033        382 KKGFVLGNDGVLLRY  396 (398)
T ss_pred             CceEEEeCCcEEEEe

>PF01011 PQQ: PQQ enzyme repeat family

Probab=82.99  E-value=5.3  Score=21.50  Aligned_cols=29  Identities=10%  Similarity=-0.159  Sum_probs=23.7

Q ss_pred             eEEEEeCCCcEEEEeCCCCcEEEEEecCC
Q 035621          195 IIISCSMDCTCKFWRLLNGTHLSTVTFPC  223 (387)
Q Consensus       195 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  223 (387)
                      .++.++.+|.|.-.|.++|+.+..++...
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~   30 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP   30 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence            34556899999999999999999887543

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=82.97  E-value=26  Score=29.14  Aligned_cols=231  Identities=15%  Similarity=0.120  Sum_probs=127.8

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++-+|||..-.++...+.|--.|..+|+....--+.......+..-|++..-.    +-+.. .|.-.|-++.+. ..+.
T Consensus        67 vapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wi----td~~~-aI~R~dpkt~ev-t~f~  140 (353)
T COG4257          67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWI----TDTGL-AIGRLDPKTLEV-TRFP  140 (353)
T ss_pred             cccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeE----ecCcc-eeEEecCcccce-EEee
Confidence            56678888888888888888889999987665555555567777777543211    11111 344444433332 1222


Q ss_pred             ----C-CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621           82 ----V-PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA-HDKPVSCLKISPDGSLLISGGDDGVIATVPIF  155 (387)
Q Consensus        82 ----~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  155 (387)
                          + ........|.+.|++-+++. .|.---.|... ..+..+.. .....+.|+..|+|..-++.-.+..|...|..
T Consensus       141 lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~  218 (353)
T COG4257         141 LPLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF  218 (353)
T ss_pred             cccccCCCcccceeeCCCccEEEeec-cccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc
Confidence                2 24677889999999888875 23222223211 22333332 23456788999999988887777777777663


Q ss_pred             cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCC
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDP  232 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~  232 (387)
                      .....          .+-.-.........+-..|.  +..-++....+.+.-||..+.. -.++..   +....++....
T Consensus       219 ~~~ae----------v~p~P~~~~~gsRriwsdpi--g~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~  285 (353)
T COG4257         219 AGHAE----------VVPQPNALKAGSRRIWSDPI--GRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDR  285 (353)
T ss_pred             cCCcc----------eecCCCcccccccccccCcc--CcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeecc
Confidence            22110          00000110111222222233  4666666666777777766544 334442   23445555555


Q ss_pred             CCCeEEEEccCCcEEEEeccc
Q 035621          233 TETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       233 ~~~~l~~~~~dg~i~i~d~~~  253 (387)
                      .++..++--..|.|.-+|-++
T Consensus       286 ~grVW~sea~agai~rfdpet  306 (353)
T COG4257         286 HGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             CCcEEeeccccCceeecCccc
Confidence            555555444455666665554

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=82.93  E-value=6.2  Score=26.40  Aligned_cols=44  Identities=14%  Similarity=-0.032  Sum_probs=31.3

Q ss_pred             EEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc
Q 035621          198 SCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       198 s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  241 (387)
                      .+..+|.+.-||..+++....+..-...+.+++++|+.+++++-
T Consensus        32 e~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   32 EGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             HT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred             cCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence            34456889999999987655555556788999999999887763

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	387
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-05
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-05
2gnq_A	336	Structure Of Wdr5 Length = 336		6e-05
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-05
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-05
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-05
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		7e-05
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		7e-05
2h9l_A	329	Wdr5delta23 Length = 329		7e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		7e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		9e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-04

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 35/170 (20%)
Query: 170 LMLQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFP 222
           + L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P
Sbjct: 143 MCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 223 CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVV 277
            + +  +  P      AA  D  +   L  Y   + +     HK ++    AN       
Sbjct: 198 VSFVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN------- 246
Query: 278 SVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
               +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 247 --FSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH-----TDVVISTA 289

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
           L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P +
Sbjct: 148 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
            +  +  P      AA  D  +   L  Y   + +     HK ++    AN         
Sbjct: 203 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 249
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
             +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 292

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
           L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P +
Sbjct: 148 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
            +  +  P      AA  D  +   L  Y   + +     HK ++    AN         
Sbjct: 203 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 249
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
             +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 292

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
           L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P +
Sbjct: 166 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 220
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
            +  +  P      AA  D  +   L  Y   + +     HK ++    AN         
Sbjct: 221 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 267
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
             +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 268 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 310

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
           L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P +
Sbjct: 141 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 195
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
            +  +  P      AA  D  +   L  Y   + +     HK ++    AN         
Sbjct: 196 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 242
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
             +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 243 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 285

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
           L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P +
Sbjct: 164 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 218
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
            +  +  P      AA  D  +   L  Y   + +     HK ++    AN         
Sbjct: 219 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 265
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
             +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 308

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
           L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P +
Sbjct: 142 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
            +  +  P      AA  D  +   L  Y   + +     HK ++    AN         
Sbjct: 197 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 243
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
             +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 244 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 286

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
           L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P +
Sbjct: 142 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
            +  +  P      AA  D  +   L  Y   + +     HK ++    AN         
Sbjct: 197 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 243
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
             +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 244 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 286

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
           L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P +
Sbjct: 138 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 192
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
            +  +  P      AA  D  +   L  Y   + +     HK ++    AN         
Sbjct: 193 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 239
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
             +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 240 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 282

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
           L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P +
Sbjct: 147 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 201
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
            +  +  P      AA  D  +   L  Y   + +     HK ++    AN         
Sbjct: 202 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 248
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
             +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 249 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 291

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
           L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P +
Sbjct: 143 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 197
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
            +  +  P      AA  D  +   L  Y   + +     HK ++    AN         
Sbjct: 198 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 244
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
             +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 245 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 287

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
           L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P +
Sbjct: 148 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
            +  +  P      AA  D  +   L  Y   + +     HK ++    AN         
Sbjct: 203 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 249
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
             +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 292

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
           L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P +
Sbjct: 159 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 213
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
            +  +  P      AA  D  +   L  Y   + +     HK ++    AN         
Sbjct: 214 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 260
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
             +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 261 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 303

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 35/170 (20%)
Query: 170 LMLQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFP 222
           + L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P
Sbjct: 143 MCLKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 223 CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVV 277
            + +  +  P      AA  D  +   L  Y   + +     HK ++    AN       
Sbjct: 198 VSFVKFS--PNGKYILAATLDNDL--KLWDYSKGKCLKTYTGHKNEKYCIFAN------- 246
Query: 278 SVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
               +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 247 --FSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH-----TDVVISTA 289

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 86  VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKXXXXXXXXXXXXX 145
           V+ +  ++DG +  +G   G +    +  G   R F  H K V                 
Sbjct: 66  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDV----------------- 108
Query: 146 XXVIATVPIFQLVDEHTDD--KNPDDLMLQKFVAHNDSVTAITCCI----GSFNSIIISC 199
             V  +    Q+V    D   K  + L + K+   ++S +    C+     S N II+SC
Sbjct: 109 LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 168
Query: 200 SMDCTCKFWRLLN----GTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQS 255
             D   K W L N      H+    +   +  + + P  +   + G DG   + +L    
Sbjct: 169 GWDKLVKVWNLANCKLKTNHIGHTGY---LNTVTVSPDGSLCASGGKDG---QAML---- 218
Query: 256 RQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL 315
              +++G+ L TL     G +++ +  +  +  + AA   S+ IW++E + +V  LK E+
Sbjct: 219 -WDLNEGKHLYTLDG---GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV 274
Query: 316 AGSISE 321
             + S+
Sbjct: 275 ISTSSK 280

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
           L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P +
Sbjct: 145 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
            +  +  P      AA  D  +   L  Y   + +     HK ++    AN         
Sbjct: 200 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 246
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
             +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 289

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
           L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P +
Sbjct: 145 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
            +  +  P      AA  D  +   L  Y   + +     HK ++    AN         
Sbjct: 200 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 246
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
             +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 289

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 41/246 (16%)
Query: 86  VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKXXXXXXXXXXXXX 145
           V+ +  ++DG +  +G   G +    +  G   R F  H K V                 
Sbjct: 89  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDV----------------- 131
Query: 146 XXVIATVPIFQLVDEHTDD--KNPDDLMLQKFVAHNDSVTAITCCI----GSFNSIIISC 199
             V  +    Q+V    D   K  + L + K+   ++S +    C+     S N II+SC
Sbjct: 132 LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC 191
Query: 200 SMDCTCKFWRLLN----GTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQS 255
             D   K W L N      H+    +   +  + + P  +   + G DG   + +L    
Sbjct: 192 GWDKLVKVWNLANCKLKTNHIGHTGY---LNTVTVSPDGSLCASGGKDG---QAML---- 241
Query: 256 RQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL 315
              +++G+ L TL     G +++ +  +  +  + AA   S+ IW++E + +V  LK E+
Sbjct: 242 -WDLNEGKHLYTLDG---GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEV 297
Query: 316 AGSISE 321
             + S+
Sbjct: 298 ISTSSK 303

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 35/168 (20%)
Query: 172 LQKFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTV----TFPCA 224
           L+   AH+D V+A+      FN   S+I+S S D  C+ W   +G  L T+      P +
Sbjct: 145 LKTLPAHSDPVSAV-----HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSV 279
            +  +  P      AA  D  +   L  Y   + +     HK ++    AN         
Sbjct: 200 FVKFS--PNGKYILAATLDNTL--KLWDYSKGKCLKTYTGHKNEKYCIFAN--------- 246
Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
             +  GK +VS +ED  VYIW ++ +++V  L+       +++VI+T 
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-----TDVVISTA 289

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	387
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.97
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.85
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.85
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.83
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.83
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.83
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.82
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.81
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.79
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.78
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.77
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.77
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.76
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.75
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.74
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.74
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.73
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.72
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.7
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.7
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.68
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.64
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.62
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.62
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.61
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.61
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.6
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.6
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.59
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.58
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.57
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.56
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.56
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.54
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.53
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.52
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.52
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.51
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.48
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.48
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.46
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.46
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.45
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.44
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.43
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.42
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.42
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.42
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.39
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.38
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.37
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.36
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.35
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.34
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.32
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.32
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.31
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.29
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.29
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.28
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.28
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.26
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.26
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.21
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.19
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.18
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.14
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.14
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.11
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.1
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.06
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.04
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.04
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.04
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.0
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.99
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.97
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.97
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.93
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.92
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.92
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.92
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.86
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.83
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.75
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.74
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.73
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.71
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.71
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.66
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.65
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.64
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.6
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.56
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.55
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.55
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.54
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.53
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.47
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.46
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.45
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.43
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.41
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.39
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.35
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.32
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.3
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.29
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.28
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.26
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.24
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.24
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.2
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.18
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.12
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.06
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.03
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.01
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.96
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.86
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.81
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.7
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.67
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.66
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.61
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.6
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.56
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.47
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.46
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.45
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.4
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.39
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.34
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.34
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.3
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.24
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.18
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.18
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.17
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.09
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.98
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.97
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.93
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.87
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.83
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.7
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.68
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.57
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.49
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.48
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.42
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.34
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.21
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.19
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.1
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.93
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.89
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.76
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.46
3ott_A	758	Two-component system sensor histidine kinase; beta	95.32
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	95.29
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.17
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	95.07
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.8
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	94.63
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	94.53
3ott_A	758	Two-component system sensor histidine kinase; beta	94.48
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	93.89
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	93.85
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	93.32
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.75
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.7
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.69
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	90.67
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.31
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	89.74
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	89.11
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	87.73
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	87.15
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	86.36
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	85.67
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	84.41
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	82.78
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.74
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.66

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-49  Score=353.38  Aligned_cols=277  Identities=16%  Similarity=0.273  Sum_probs=251.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|+|++.+|++|+.||+|+|||+.+++....+.+|...|.+++|+|++.+    +++++.|++|++||+.+++++..+.
T Consensus       114 ~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~----l~sgs~D~~i~iwd~~~~~~~~~~~  189 (410)
T 1vyh_C          114 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL----LASCSADMTIKLWDFQGFECIRTMH  189 (410)
T ss_dssp             EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSE----EEEEETTSCCCEEETTSSCEEECCC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE----EEEEeCCCeEEEEeCCCCceeEEEc
Confidence            579999999999999999999999999999999999999999999996544    4459999999999999988887776


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                       |...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.++.|+|+++++++++.|+.|++||+      
T Consensus       190 ~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~------  263 (410)
T 1vyh_C          190 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV------  263 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET------
T ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEEC------
Confidence             6789999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             CCCCCCCCccceEeeeccCCCeEEEEEeeCCC------------------CceEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 035621          161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF------------------NSIIISCSMDCTCKFWRLLNGTHLSTVT-F  221 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~  221 (387)
                            ........+..|...|.+++|+|+..                  +.+|++|+.|++|++||+++++++..+. |
T Consensus       264 ------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h  337 (410)
T 1vyh_C          264 ------ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  337 (410)
T ss_dssp             ------TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ------CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence                  55667788899999999999998632                  4689999999999999999999998887 7


Q ss_pred             CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          222 PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       222 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      ...|.+++|+|++++|++++.|+.|++||+....         ....+.+|...|++++|+|++.+|++|+.||+|++|+
T Consensus       338 ~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~---------~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---------CCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            7889999999999999999999999999997632         2223457999999999999999999999999999998


Q ss_pred             CC
Q 035621          302 IE  303 (387)
Q Consensus       302 ~~  303 (387)
                      ++
T Consensus       409 ~r  410 (410)
T 1vyh_C          409 CR  410 (410)
T ss_dssp             --
T ss_pred             CC
Confidence            63

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.5e-48  Score=331.33  Aligned_cols=275  Identities=20%  Similarity=0.280  Sum_probs=244.7

Q ss_pred             ccccCC----CcEEEeeCCCCcEEEEeCCCCce--eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC
Q 035621            2 LHHLPC----NEVILTSSPEGPITAYNPSSGAI--LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST   75 (387)
Q Consensus         2 l~~s~~----~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~   75 (387)
                      ++|+|+    +.+|++|+.|++|+|||+.+++.  ...+.+|...|.+++|+++..+    +++++.|+.|++||+.+++
T Consensus        38 v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~----l~s~s~D~~i~lWd~~~~~  113 (321)
T 3ow8_A           38 VAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPI----AASSSLDAHIRLWDLENGK  113 (321)
T ss_dssp             EEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSE----EEEEETTSEEEEEETTTTE
T ss_pred             EEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCE----EEEEeCCCcEEEEECCCCC
Confidence            467764    67999999999999999977653  4568899999999999996544    4458999999999999998


Q ss_pred             cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621           76 PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        76 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  154 (387)
                      .+..+. +...+.+++|+|++++|++|+.+|.|++|++++++....+..|...|.+++|+|++++|++++.||.|++||+
T Consensus       114 ~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~  193 (321)
T 3ow8_A          114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI  193 (321)
T ss_dssp             EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            887776 5578999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCC
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPT  233 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~  233 (387)
                                  .....+..+.+|..+|.+++|+|++  ++|++++.|++|++||+++++....+. |...|.+++|+|+
T Consensus       194 ------------~~~~~~~~~~~h~~~v~~l~~spd~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  259 (321)
T 3ow8_A          194 ------------ATGKLLHTLEGHAMPIRSLTFSPDS--QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD  259 (321)
T ss_dssp             ------------TTTEEEEEECCCSSCCCEEEECTTS--CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             ------------CCCcEEEEEcccCCceeEEEEcCCC--CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCC
Confidence                        5667788899999999999999985  899999999999999999999888887 6788999999999


Q ss_pred             CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      +++|++++.|+.|++||+.+.         .....+.+|...|.+++|+|++++|++++.||.|++||..
T Consensus       260 ~~~l~s~s~D~~v~iwd~~~~---------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          260 DTHFVSSSSDKSVKVWDVGTR---------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             SSEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCEEEEEeCCCcEEEEeCCCC---------EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999873         2333345799999999999999999999999999999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.3e-48  Score=334.17  Aligned_cols=272  Identities=17%  Similarity=0.213  Sum_probs=243.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc----c
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP----L   77 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~----~   77 (387)
                      ++|+|++++|++|+.||.|+|||..+++.+..+..|...|.+++|+|++.+    +++++.|+.+++|++.+++.    .
T Consensus        61 ~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~s~~~d~~v~iw~~~~~~~~~~~~  136 (340)
T 1got_B           61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY----VACGGLDNICSIYNLKTREGNVRVS  136 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSE----EEEEETTCEEEEEETTTCSBSCEEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCE----EEEEeCCCeEEEEECccCCCcceeE
Confidence            579999999999999999999999999999999999999999999996554    44589999999999987642    2


Q ss_pred             ccc-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621           78 HNI-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        78 ~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      ..+ .|...|.++.|++++. +++++.|+.|++||+++++.+..+.+|...|.+++|+|+++++++|+.|+.|++||+  
T Consensus       137 ~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~--  213 (340)
T 1got_B          137 RELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV--  213 (340)
T ss_dssp             EEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET--
T ss_pred             EEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC--
Confidence            222 3778899999998875 889999999999999999999999999999999999999999999999999999999  


Q ss_pred             ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC---CceeEEEeCCC
Q 035621          157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP---CAIMGLALDPT  233 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~  233 (387)
                                ........+.+|...|.+++|+|++  ++|++++.|++|++||+++++.+..+.++   ..|.+++|+|+
T Consensus       214 ----------~~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  281 (340)
T 1got_B          214 ----------REGMCRQTFTGHESDINAICFFPNG--NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             ----------TTCSEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred             ----------CCCeeEEEEcCCcCCEEEEEEcCCC--CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence                      5566788899999999999999985  89999999999999999999988887754   47999999999


Q ss_pred             CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      +++|++|+.||.|++||+....         ....+.+|...|.+++|+|++.+|++|+.||.|++||
T Consensus       282 g~~l~~g~~d~~i~vwd~~~~~---------~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          282 GRLLLAGYDDFNCNVWDALKAD---------RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSEEEEEETTSEEEEEETTTCC---------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCEEEEECCCCeEEEEEcccCc---------EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999999999999987632         2333458999999999999999999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.2e-47  Score=354.78  Aligned_cols=361  Identities=16%  Similarity=0.150  Sum_probs=272.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc--eeEeccCCCCCceeEEEcCccceee-------------------------
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA--ILAHFSGSRSPRRGLTFAGKPFIAA-------------------------   54 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~-------------------------   54 (387)
                      ++|||+|++||+|+.||+|+|||+.+++  ....+.+|.++|.+++|+|++...+                         
T Consensus        65 ~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~  144 (611)
T 1nr0_A           65 AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT  144 (611)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC
T ss_pred             EEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceec
Confidence            6899999999999999999999986543  3456667777777777777543221                         


Q ss_pred             ----------------eccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce
Q 035621           55 ----------------SHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI  117 (387)
Q Consensus        55 ----------------~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  117 (387)
                                      ..+++++.|++|++||..+++....+. |...|.+++|+|++++|++|+.|++|++||+.+++.
T Consensus       145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~  224 (611)
T 1nr0_A          145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK  224 (611)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE
Confidence                            136779999999999998887777665 778999999999999999999999999999999998


Q ss_pred             eEEcc-------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCC-------------------------
Q 035621          118 LRSFS-------AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDK-------------------------  165 (387)
Q Consensus       118 ~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------  165 (387)
                      +..+.       +|.+.|.+++|+|++++|++++.|++|++||+...........                         
T Consensus       225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~  304 (611)
T 1nr0_A          225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG  304 (611)
T ss_dssp             EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred             eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCC
Confidence            88874       7999999999999999999999999999999864321100000                         


Q ss_pred             ------CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE--------------------
Q 035621          166 ------NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV--------------------  219 (387)
Q Consensus       166 ------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------------------  219 (387)
                            .........+.+|...|.+++|+|++  ++|++++.|++|++||+.+++....+                    
T Consensus       305 ~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg--~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~  382 (611)
T 1nr0_A          305 FINFVNPELGSIDQVRYGHNKAITALSSSADG--KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF  382 (611)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE
T ss_pred             cEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC--CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEE
Confidence                  00122345667899999999999975  89999999999999999876543221                    


Q ss_pred             ---------------------------------------------------------------ecCCceeEEEeCCCCCe
Q 035621          220 ---------------------------------------------------------------TFPCAIMGLALDPTETD  236 (387)
Q Consensus       220 ---------------------------------------------------------------~~~~~v~~~~~~~~~~~  236 (387)
                                                                                     .+...+.+++|+|+|++
T Consensus       383 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~  462 (611)
T 1nr0_A          383 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQF  462 (611)
T ss_dssp             EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCE
T ss_pred             EEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCE
Confidence                                                                           11234678999999999


Q ss_pred             EEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC-ccEEEE-eecc
Q 035621          237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK-RQVVMV-LKNE  314 (387)
Q Consensus       237 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~-~~~~  314 (387)
                      |++|+.|+.|++||+.....       ..... .+|...|++++|+|+|++|++++.|++|++|++.+ ++++.. ....
T Consensus       463 lasgs~D~~v~lwd~~~~~~-------~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~  534 (611)
T 1nr0_A          463 VAVGGQDSKVHVYKLSGASV-------SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF  534 (611)
T ss_dssp             EEEEETTSEEEEEEEETTEE-------EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC
T ss_pred             EEEeCCCCeEEEEEccCCce-------eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeee
Confidence            99999999999999976321       11112 47999999999999999999999999999999998 666554 2332


Q ss_pred             cCCCceeEEEEec--------CCCceeeEEEecCCCCC--CCCC----cceee-e--ccceeccccccchhhhce
Q 035621          315 LAGSISEMVIATG--------IGGSRGCGVVKTGKAGN--DSGG----GVFEM-Y--GEKLLDLSIKNTIELENV  372 (387)
Q Consensus       315 ~~~~v~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~----~~~~~-~--~~~~~~~~~~~~~~~~~~  372 (387)
                      +.+.|++++|++.        .++.+.+|.+..+....  ...+    .+..+ |  ..+.+..+.|+++++|+.
T Consensus       535 H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV  609 (611)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             cccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCEEEEecCCCCEEEEec
Confidence            4568999877653        34556888776544211  1111    11111 1  112566668888888875

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.8e-47  Score=322.14  Aligned_cols=278  Identities=15%  Similarity=0.180  Sum_probs=240.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|+|++++|++|+.||.|++||+.+++.+..+..|..+|.+++|+|++.+    +++++.|+.|++||+.+++.+..+.
T Consensus        19 ~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~s~s~d~~i~vwd~~~~~~~~~~~   94 (304)
T 2ynn_A           19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNW----IIVGSDDFRIRVFNYNTGEKVVDFE   94 (304)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTE----EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCE----EEEECCCCEEEEEECCCCcEEEEEe
Confidence            689999999999999999999999999999999999999999999996544    4459999999999999998887776


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCccc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                       |...|.+++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|+.|++||++.  
T Consensus        95 ~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~--  172 (304)
T 2ynn_A           95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--  172 (304)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC--
T ss_pred             CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC--
Confidence             7789999999999999999999999999999887 45567889999999999999 678999999999999999942  


Q ss_pred             ccCCCCCCCCccceEe-eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCe
Q 035621          159 DEHTDDKNPDDLMLQK-FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETD  236 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~  236 (387)
                                ...... ...|...+..+.++|.+++.+|++++.|++|++||+++++++..+. |...|.+++|+|++++
T Consensus       173 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~  242 (304)
T 2ynn_A          173 ----------STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI  242 (304)
T ss_dssp             ----------SSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred             ----------CCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence                      222233 3456688999999987767899999999999999999999999988 7789999999999999


Q ss_pred             EEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC--EEEEEeCCCcEEEEECCCc
Q 035621          237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK--NLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       237 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~  305 (387)
                      |++++.||.|++||..+.         .+...+..|...+.+++|+|++.  ++++|+.| .+.+|++.+.
T Consensus       243 l~s~s~Dg~i~iWd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~~  303 (304)
T 2ynn_A          243 IISGSEDGTLKIWNSSTY---------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGND  303 (304)
T ss_dssp             EEEEETTSCEEEEETTTC---------CEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC--
T ss_pred             EEEEcCCCeEEEEECCCC---------ceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEeccC
Confidence            999999999999999873         23333457888999999999875  57777655 4778887653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.8e-47  Score=330.54  Aligned_cols=277  Identities=14%  Similarity=0.116  Sum_probs=226.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCC-----------ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEE
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSG-----------AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYN   70 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~   70 (387)
                      ++|+|||++|++++ |+++++||....           ........|...|.+++|+|+..+     ++++.||+|++||
T Consensus        36 ~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l-----~~~s~dg~v~lWd  109 (344)
T 4gqb_B           36 ARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGI-----LVASDSGAVELWE  109 (344)
T ss_dssp             EEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEE-----EEEETTSEEEEEE
T ss_pred             EEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeE-----EEEECCCEEEEEe
Confidence            57999999999887 678888873211           111112235677999999997543     3488999999999


Q ss_pred             ccCCCccccc-----CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEe
Q 035621           71 LWSSTPLHNI-----PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGG  144 (387)
Q Consensus        71 ~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~  144 (387)
                      +.+++.....     .|.+.|.+++|+|+|++|++|+.|+.|++||+++++++..+.+|...|++++|+|++. +|++++
T Consensus       110 ~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s  189 (344)
T 4gqb_B          110 LDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS  189 (344)
T ss_dssp             ECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred             ccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeec
Confidence            9998776543     3788999999999999999999999999999999999999999999999999999875 789999


Q ss_pred             CCCcEEEEeCCcccccCCCCCCCCccceEee--eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 035621          145 DDGVIATVPIFQLVDEHTDDKNPDDLMLQKF--VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-F  221 (387)
Q Consensus       145 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~  221 (387)
                      .|+.|++||++            .......+  ..|...+.+++|+|.. +++|++|+.||+|++||+++++++..+. |
T Consensus       190 ~D~~v~iwd~~------------~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h  256 (344)
T 4gqb_B          190 EDNRILLWDTR------------CPKPASQIGCSAPGYLPTSLAWHPQQ-SEVFVFGDENGTVSLVDTKSTSCVLSSAVH  256 (344)
T ss_dssp             TTSCEEEEETT------------SSSCEEECC----CCCEEEEEECSSC-TTEEEEEETTSEEEEEESCC--CCEEEECC
T ss_pred             ccccccccccc------------ccceeeeeecceeeccceeeeecCCC-CcceEEeccCCcEEEEECCCCcEEEEEcCC
Confidence            99999999993            44444444  3456678999999864 5789999999999999999999998887 7


Q ss_pred             CCceeEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC-EEEEEeCCCcEEE
Q 035621          222 PCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAAEDGSVYI  299 (387)
Q Consensus       222 ~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~i  299 (387)
                      ...|++++|+|++ ++|++|+.|+.|++||+..+.         +.. ..+|.+.|++++|+|+++ +|++++.||+|++
T Consensus       257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---------~~~-~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~  326 (344)
T 4gqb_B          257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---------LFR-SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH  326 (344)
T ss_dssp             SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---------EEE-ECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---------EEE-EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence            7899999999998 578999999999999998732         222 358999999999999986 5679999999999


Q ss_pred             EECCCccE
Q 035621          300 WEIEKRQV  307 (387)
Q Consensus       300 wd~~~~~~  307 (387)
                      |++.+..+
T Consensus       327 w~v~~~~~  334 (344)
T 4gqb_B          327 HVVPTEPL  334 (344)
T ss_dssp             EECCC---
T ss_pred             EECCCCCC
Confidence            99987644

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-47  Score=334.35  Aligned_cols=280  Identities=17%  Similarity=0.197  Sum_probs=226.6

Q ss_pred             ccccCCCcEEEeeCC------CCcEEEEeCCCCceeEe----ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc
Q 035621            2 LHHLPCNEVILTSSP------EGPITAYNPSSGAILAH----FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL   71 (387)
Q Consensus         2 l~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~   71 (387)
                      ++|||||++||+|+.      |+.|++|+..++.....    ..+|...|.+++|+|+..++.     ++.||+|++||+
T Consensus        48 v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~-----~s~dg~v~lWd~  122 (357)
T 4g56_B           48 VRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILV-----ASDSGAVELWEI  122 (357)
T ss_dssp             EEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEE-----EETTSCEEEC--
T ss_pred             EEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEE-----EECCCEEEEeec
Confidence            689999999999997      78899999887765433    346888999999999765443     678999999999


Q ss_pred             cCCCccccc-----CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEeC
Q 035621           72 WSSTPLHNI-----PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGGD  145 (387)
Q Consensus        72 ~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~  145 (387)
                      .+++.....     .|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|++++|+|++. ++++++.
T Consensus       123 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~  202 (357)
T 4g56_B          123 LEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGE  202 (357)
T ss_dssp             ------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEET
T ss_pred             cccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeecc
Confidence            888654432     3678999999999999999999999999999999999999999999999999999875 7899999


Q ss_pred             CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCc
Q 035621          146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCA  224 (387)
Q Consensus       146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~  224 (387)
                      ||.|++||++..          ..........|...+.+++|+|+. +.+|++|+.|+.|++||+++++++..+. +...
T Consensus       203 dg~v~~wd~~~~----------~~~~~~~~~~~~~~v~~v~~sp~~-~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~  271 (357)
T 4g56_B          203 DGRILLWDTRKP----------KPATRIDFCASDTIPTSVTWHPEK-DDTFACGDETGNVSLVNIKNPDSAQTSAVHSQN  271 (357)
T ss_dssp             TSCEEECCTTSS----------SCBCBCCCTTCCSCEEEEEECTTS-TTEEEEEESSSCEEEEESSCGGGCEEECCCSSC
T ss_pred             CCceEEEECCCC----------ceeeeeeeccccccccchhhhhcc-cceEEEeecccceeEEECCCCcEeEEEecccee
Confidence            999999999431          111222334577789999999875 5789999999999999999999988887 6789


Q ss_pred             eeEEEeCCCC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEEeCCCcEEEEEC
Q 035621          225 IMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       225 v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~  302 (387)
                      |++++|+|++ ++|++++.|+.|++||++++         ++... .+|.+.|++++|+| ++++|++++.||+|++|++
T Consensus       272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---------~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~  341 (357)
T 4g56_B          272 ITGLAYSYHSSPFLASISEDCTVAVLDADFS---------EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL  341 (357)
T ss_dssp             EEEEEECSSSSCCEEEEETTSCEEEECTTSC---------EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---------cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence            9999999987 57899999999999999873         22222 27999999999998 7999999999999999999


Q ss_pred             CCccE
Q 035621          303 EKRQV  307 (387)
Q Consensus       303 ~~~~~  307 (387)
                      .+...
T Consensus       342 ~~~~~  346 (357)
T 4g56_B          342 PSEGR  346 (357)
T ss_dssp             C----
T ss_pred             CCCCc
Confidence            76433

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.1e-47  Score=330.40  Aligned_cols=295  Identities=16%  Similarity=0.180  Sum_probs=237.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeE---eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--c
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILA---HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--P   76 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~   76 (387)
                      ++|+|+|++||+|+.|+.|+|||+.++....   ...+|...|.+++|+|++.+    +++++.|+.+++|++..+.  .
T Consensus        22 l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~----l~s~s~D~~v~iw~~~~~~~~~   97 (345)
T 3fm0_A           22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY----LASASFDATTCIWKKNQDDFEC   97 (345)
T ss_dssp             EEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSE----EEEEETTSCEEEEEECCC-EEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCE----EEEEECCCcEEEEEccCCCeEE
Confidence            6899999999999999999999998776432   23689999999999996544    4459999999999998764  3


Q ss_pred             ccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc---eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621           77 LHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD---ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATV  152 (387)
Q Consensus        77 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  152 (387)
                      +..+. |...|.+++|+|++++|++|+.|+.|++||+.+++   ++..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus        98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w  177 (345)
T 3fm0_A           98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY  177 (345)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEE
T ss_pred             EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEE
Confidence            44444 77899999999999999999999999999998763   456778999999999999999999999999999999


Q ss_pred             eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC---------------cEEE
Q 035621          153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG---------------THLS  217 (387)
Q Consensus       153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---------------~~~~  217 (387)
                      |+..          ........+.+|...|.+++|+|++  ++|++++.|++|++||....               +++.
T Consensus       178 ~~~~----------~~~~~~~~~~~h~~~v~~l~~sp~g--~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~  245 (345)
T 3fm0_A          178 REEE----------DDWVCCATLEGHESTVWSLAFDPSG--QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC  245 (345)
T ss_dssp             EEET----------TEEEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEE
T ss_pred             EecC----------CCEEEEEEecCCCCceEEEEECCCC--CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeE
Confidence            9832          1223456788999999999999985  89999999999999996422               2233


Q ss_pred             EEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCC
Q 035621          218 TVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAED  294 (387)
Q Consensus       218 ~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d  294 (387)
                      .+.  +...|.+++|+|++..|++++.|+.|++|+....................+|...|++++|+|++ .+|++|+.|
T Consensus       246 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D  325 (345)
T 3fm0_A          246 TLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD  325 (345)
T ss_dssp             EECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT
T ss_pred             EecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC
Confidence            333  56789999999999999999999999999987643222211112233446899999999999998 499999999


Q ss_pred             CcEEEEECCCccEEEEee
Q 035621          295 GSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       295 g~i~iwd~~~~~~~~~~~  312 (387)
                      |+|++|++.+++.+....
T Consensus       326 g~v~~W~~~~~~~~~~~~  343 (345)
T 3fm0_A          326 GEVAFWKYQRPEGLHHHH  343 (345)
T ss_dssp             SCEEEEEECC--------
T ss_pred             CcEEEEEecCCCCccccc
Confidence            999999999988766543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.8e-46  Score=324.49  Aligned_cols=273  Identities=18%  Similarity=0.232  Sum_probs=242.1

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc-----
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP-----   76 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~-----   76 (387)
                      ++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+|++..    +++++.|+.+++|++.....     
T Consensus        70 ~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~----lasg~~d~~i~v~~~~~~~~~~~~~  145 (354)
T 2pbi_B           70 MDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCA----IACGGLDNKCSVYPLTFDKNENMAA  145 (354)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSE----EEEESTTSEEEEEECCCCTTCCSGG
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCE----EEEeeCCCCEEEEEEeccccccccc
Confidence            579999999999999999999999999999999999999999999996554    44599999999999865421     


Q ss_pred             -cccc-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEE
Q 035621           77 -LHNI-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP--DGSLLISGGDDGVIATV  152 (387)
Q Consensus        77 -~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw  152 (387)
                       ...+ .|...|.+++|+|++..|++++.|++|++||+++++++..+.+|...|.+++|+|  ++++|++|+.||.|++|
T Consensus       146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w  225 (354)
T 2pbi_B          146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW  225 (354)
T ss_dssp             GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred             cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence             1112 2778899999999999999999999999999999999999999999999999988  56899999999999999


Q ss_pred             eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC---CceeEEE
Q 035621          153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP---CAIMGLA  229 (387)
Q Consensus       153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~  229 (387)
                      |+            .....+..+..|...|.+++|+|++  .+|++++.|++|++||+++++.+..+...   ..+.+++
T Consensus       226 d~------------~~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~  291 (354)
T 2pbi_B          226 DM------------RSGQCVQAFETHESDVNSVRYYPSG--DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD  291 (354)
T ss_dssp             ET------------TTCCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred             EC------------CCCcEEEEecCCCCCeEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE
Confidence            99            5666788889999999999999985  89999999999999999999887777633   4789999


Q ss_pred             eCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          230 LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       230 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      |+|++++|++++.|+.|++||+..+.        . ...+.+|...|++++|+|+|++|++|+.||+|++|+
T Consensus       292 ~s~~g~~l~~g~~d~~i~vwd~~~~~--------~-~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          292 FSLSGRLLFAGYNDYTINVWDVLKGS--------R-VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCS--------E-EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EeCCCCEEEEEECCCcEEEEECCCCc--------e-EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999997632        2 233458999999999999999999999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.2e-46  Score=331.10  Aligned_cols=283  Identities=18%  Similarity=0.224  Sum_probs=243.1

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC------
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST------   75 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~------   75 (387)
                      ++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+|++.+    +++++.|+.+++|++.+..      
T Consensus        72 ~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~----las~~~d~~v~iw~~~~~~~~~~~~  147 (380)
T 3iz6_a           72 LDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQS----VACGGLDSACSIFNLSSQADRDGNM  147 (380)
T ss_dssp             EEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSE----EEECCSSSCCEEEECCCCSSCCCSS
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCE----EEEeeCCCcEEEEECCCCccccCCc
Confidence            579999999999999999999999999999999999999999999996654    4459999999999997542      


Q ss_pred             -ccccc-CCCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCceeEEc-----cCCCCCeEEEEEcC-CCCEEEEEeCC
Q 035621           76 -PLHNI-PVPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGDILRSF-----SAHDKPVSCLKISP-DGSLLISGGDD  146 (387)
Q Consensus        76 -~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d  146 (387)
                       ....+ .|...+.++.|.|+ +..|++|+.|++|++||+++++.+..+     .+|...|.+++|+| +++++++|+.|
T Consensus       148 ~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D  227 (380)
T 3iz6_a          148 PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD  227 (380)
T ss_dssp             TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT
T ss_pred             cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC
Confidence             11222 36678999999996 457999999999999999999988776     57899999999987 88999999999


Q ss_pred             CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC----
Q 035621          147 GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP----  222 (387)
Q Consensus       147 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----  222 (387)
                      +.|++||++.           ....+..+.+|...|.+++|+|++  .+|++++.|++|++||+++++.+..+...    
T Consensus       228 ~~v~~wd~~~-----------~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          228 TTVRLWDLRI-----------TSRAVRTYHGHEGDINSVKFFPDG--QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             SCEEEEETTT-----------TCCCCEEECCCSSCCCEEEECTTS--SEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             CeEEEEECCC-----------CCcceEEECCcCCCeEEEEEecCC--CeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence            9999999942           345677888999999999999985  89999999999999999999988887632    


Q ss_pred             ----CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEE
Q 035621          223 ----CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVY  298 (387)
Q Consensus       223 ----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  298 (387)
                          ..+.+++|+|+|++|++|+.||.|++||........     .+.....+|.+.|++++|+|+|++|++|+.||+|+
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~  369 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL-----NLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLK  369 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEE-----EECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEE
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEE-----EEecccCCCCCceEEEEECCCCCEEEEeeCCCCEE
Confidence                248999999999999999999999999987643211     11122357999999999999999999999999999


Q ss_pred             EEECCCcc
Q 035621          299 IWEIEKRQ  306 (387)
Q Consensus       299 iwd~~~~~  306 (387)
                      +|++...+
T Consensus       370 iW~~~~~~  377 (380)
T 3iz6_a          370 IWAFSGHR  377 (380)
T ss_dssp             EEECCSSS
T ss_pred             EEecCCCc
Confidence            99998764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.5e-46  Score=348.80  Aligned_cols=304  Identities=17%  Similarity=0.233  Sum_probs=258.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc--cc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL--HN   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~--~~   79 (387)
                      ++|+|||++||+++ ++.|++||+.+++....+.+|...|++++|+|++.+++    +++.|++|++||+.+++..  ..
T Consensus        24 ~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la----sg~~d~~v~lWd~~~~~~~~~~~   98 (611)
T 1nr0_A           24 LGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA----SGDVHGNVRIWDTTQTTHILKTT   98 (611)
T ss_dssp             CEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEE----EEETTSEEEEEESSSTTCCEEEE
T ss_pred             EeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEE----EEeCCCCEEEeECCCCcceeeEe
Confidence            68999999999998 56999999999999999999999999999999765554    4999999999999765432  23


Q ss_pred             c-CCCCCeeeEEeccCCCEEEEecCC----CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 035621           80 I-PVPEPVAPLATTADGSYLFTGGLS----GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGGDDGVIATVP  153 (387)
Q Consensus        80 ~-~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd  153 (387)
                      + .|..+|.+++|+|++++|++++.+    +.|++||  .++....+.+|...|++++|+|++. .|++++.|++|++||
T Consensus        99 ~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd  176 (611)
T 1nr0_A           99 IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE  176 (611)
T ss_dssp             EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE
T ss_pred             ecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEE
Confidence            3 367899999999999999998765    3678887  5667778899999999999999987 699999999999999


Q ss_pred             CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE--------ecCCce
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV--------TFPCAI  225 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~v  225 (387)
                      .            ........+.+|...|.+++|+|++  ++|++++.|++|++||+.+++.+..+        .|...|
T Consensus       177 ~------------~~~~~~~~l~~H~~~V~~v~fspdg--~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V  242 (611)
T 1nr0_A          177 G------------PPFKFKSTFGEHTKFVHSVRYNPDG--SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV  242 (611)
T ss_dssp             T------------TTBEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred             C------------CCCeEeeeeccccCceEEEEECCCC--CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCE
Confidence            8            4556778889999999999999985  89999999999999999999988887        367899


Q ss_pred             eEEEeCCCCCeEEEEccCCcEEEEeccccccccccc----------------------------------cceeEeeccc
Q 035621          226 MGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK----------------------------------GQELVTLANR  271 (387)
Q Consensus       226 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------------~~~~~~~~~~  271 (387)
                      .+++|+|++++|++++.|+.|++||+.++.......                                  .......+.+
T Consensus       243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g  322 (611)
T 1nr0_A          243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG  322 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence            999999999999999999999999998754322110                                  0112234468


Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       272 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      |...|++++|+|+|++|++++.|++|++||+.+++....+...+...|.++.|++
T Consensus       323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~  377 (611)
T 1nr0_A          323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS  377 (611)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECC
Confidence            9999999999999999999999999999999999988777444566888887753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.1e-46  Score=320.58  Aligned_cols=283  Identities=16%  Similarity=0.269  Sum_probs=241.4

Q ss_pred             ccccCCC-cEEEeeCCCCcEEEEeCCC-----CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC
Q 035621            2 LHHLPCN-EVILTSSPEGPITAYNPSS-----GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST   75 (387)
Q Consensus         2 l~~s~~~-~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~   75 (387)
                      ++|+|++ ++|++|+.|++|++|++.+     +..+..+.+|...|.+++|+|++.+    +++++.|++|++||+.+++
T Consensus        23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~----l~s~s~D~~v~~wd~~~~~   98 (319)
T 3frx_A           23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY----ALSASWDKTLRLWDVATGE   98 (319)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSE----EEEEETTSEEEEEETTTTE
T ss_pred             EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCE----EEEEeCCCEEEEEECCCCC
Confidence            5788865 8999999999999999864     3457788999999999999996554    4459999999999999998


Q ss_pred             cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC------CCEEEEEeCCCc
Q 035621           76 PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD------GSLLISGGDDGV  148 (387)
Q Consensus        76 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~  148 (387)
                      .+..+. |...|.+++|+|++.+|++|+.|+.|++||++ ++++..+.+|...|.+++|+|.      +..+++++.|+.
T Consensus        99 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~  177 (319)
T 3frx_A           99 TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM  177 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSC
T ss_pred             eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCE
Confidence            887765 77899999999999999999999999999985 5677888899999999999985      448999999999


Q ss_pred             EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEE
Q 035621          149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGL  228 (387)
Q Consensus       149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~  228 (387)
                      |++||+            ........+.+|...|.+++|+|++  ++|++++.|++|++||+.+++.+..+..+..+.++
T Consensus       178 i~~wd~------------~~~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~  243 (319)
T 3frx_A          178 VKAWNL------------NQFQIEADFIGHNSNINTLTASPDG--TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSL  243 (319)
T ss_dssp             EEEEET------------TTTEEEEEECCCCSCEEEEEECTTS--SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEE
T ss_pred             EEEEEC------------CcchhheeecCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEE
Confidence            999999            4556677888999999999999985  89999999999999999999999999988999999


Q ss_pred             EeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621          229 ALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       229 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  305 (387)
                      +|+|++.++++++.+ .+++|++........... ........|...+.+++|+|+|++|++|+.||.|++||+.++
T Consensus       244 ~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          244 AFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRP-EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EECSSSSEEEEEETT-EEEEEEETTEEEEEEECC-CCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCc-cccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            999999998887755 599999876432221111 011112356778999999999999999999999999998764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3e-45  Score=312.32  Aligned_cols=274  Identities=20%  Similarity=0.207  Sum_probs=238.2

Q ss_pred             ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNV  107 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i  107 (387)
                      +...++.+|.+.|.+++|+|++.+    +++++.||.|++||+.+++.+..+. +..+|.+++|+|++++|++|+.|+.|
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~----l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPW----VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSE----EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCE----EEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            456778899999999999996554    4458999999999999998887776 56789999999999999999999999


Q ss_pred             EEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621          108 YAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC  187 (387)
Q Consensus       108 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  187 (387)
                      ++||+.+++.+..+.+|...|++++|+|++++|++|+.|++|++||+..           .......+.+|...|.+++|
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~-----------~~~~~~~~~~h~~~v~~v~~  148 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-----------NWALEQTFEGHEHFVMCVAF  148 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG-----------TTEEEEEECCCCSCEEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC-----------CcchhhhhcccCCcEEEEEE
Confidence            9999999999999999999999999999999999999999999999832           22345678899999999999


Q ss_pred             eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCC--CCCeEEEEccCCcEEEEeccccccccccccc
Q 035621          188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDP--TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ  263 (387)
Q Consensus       188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  263 (387)
                      +|.. +.+|++|+.|++|++||++++.....+.  +...+..+.|+|  ++.+|++++.|+.|++||+++.         
T Consensus       149 ~p~~-~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---------  218 (304)
T 2ynn_A          149 NPKD-PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---------  218 (304)
T ss_dssp             CTTC-TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---------
T ss_pred             CCCC-CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---------
Confidence            9853 4899999999999999999887766665  456788999986  6789999999999999999873         


Q ss_pred             eeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621          264 ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       264 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  328 (387)
                      .....+.+|...|.+++|+|++++|++|+.||+|++||+.+++++..+..+. ..+.++++.+..
T Consensus       219 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~  282 (304)
T 2ynn_A          219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL-ERSWCIATHPTG  282 (304)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS-SSEEEEEECTTC
T ss_pred             ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC-ccEEEEEECCCC
Confidence            2333446899999999999999999999999999999999999999998764 478888765543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-44  Score=310.79  Aligned_cols=276  Identities=14%  Similarity=0.190  Sum_probs=239.8

Q ss_pred             CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc--cc-CCCCCeeeEEeccCCCEEEEecCC
Q 035621           28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH--NI-PVPEPVAPLATTADGSYLFTGGLS  104 (387)
Q Consensus        28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~--~~-~~~~~v~~~~~~~~~~~l~~~~~d  104 (387)
                      +.....+++|.++|.+++|+|+.......+++|+.|++|++|++.+++...  .+ .|...|.+++|++++.++++++.|
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D  101 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD  101 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence            445567789999999999998543344567779999999999998765432  23 377899999999999999999999


Q ss_pred             CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEE
Q 035621          105 GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTA  184 (387)
Q Consensus       105 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  184 (387)
                      +.|++||+++++.+..+..|...+.+++|+|++++|++++.||.|++||+            ........+..|...+.+
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~------------~~~~~~~~~~~~~~~v~~  169 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV------------ESGKKEYSLDTRGKFILS  169 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET------------TTCSEEEEEECSSSCEEE
T ss_pred             CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc------------CCCceeEEecCCCceEEE
Confidence            99999999999999999999999999999999999999999999999999            456667788889999999


Q ss_pred             EEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccc
Q 035621          185 ITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ  263 (387)
Q Consensus       185 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  263 (387)
                      ++|+|++  ++|++++.|+.|++||+++++.+..+. +...|.+++|+|++++|++++.|+.|++||++..         
T Consensus       170 ~~~spdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---------  238 (321)
T 3ow8_A          170 IAYSPDG--KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---------  238 (321)
T ss_dssp             EEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---------
T ss_pred             EEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---------
Confidence            9999985  899999999999999999999998887 6788999999999999999999999999999863         


Q ss_pred             eeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          264 ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       264 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      .....+.+|...|.+++|+|++++|++++.|++|++||+.+++++..+..|. +.|.++.|++.
T Consensus       239 ~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~-~~v~~v~~s~~  301 (321)
T 3ow8_A          239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ-DQVWGVKYNGN  301 (321)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECTT
T ss_pred             ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC-CcEEEEEECCC
Confidence            2233456899999999999999999999999999999999999999998774 58988888753

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.6e-44  Score=333.96  Aligned_cols=293  Identities=22%  Similarity=0.322  Sum_probs=256.6

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|+|++++|++++.|+.|++||. +++.+..+.+|..+|.+++|+|+....    ++++.|+.|++||...........
T Consensus       268 v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l----~t~~~d~~i~~w~~~~~~~~~~~~  342 (577)
T 2ymu_A          268 VAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTI----ASASDDKTVKLWNRNGQHLQTLTG  342 (577)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEE----EEEETTSCEEEEETTSCEEEEECC
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEE----EEEeCCCeEEEEeCCCCeeEEEeC
Confidence            578999999999999999999996 678888899999999999999965444    448899999999987655544445


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                      +...+.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||.       
T Consensus       343 ~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-------  414 (577)
T 2ymu_A          343 HSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-------  414 (577)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-------
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-------
Confidence            7789999999999999999999999999995 67888889999999999999999999999999999999986       


Q ss_pred             CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEE
Q 035621          162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAA  240 (387)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~  240 (387)
                            ....+..+.+|...|.+++|+|++  ++|++++.|++|++||. +++.+..+. +...|.+++|+|++++|+++
T Consensus       415 ------~~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~  485 (577)
T 2ymu_A          415 ------NGQLLQTLTGHSSSVWGVAFSPDD--QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASA  485 (577)
T ss_dssp             ------TCCEEEEEECCSSCEEEEEECTTS--SEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEE
T ss_pred             ------CCCEEEEecCCCCCeEEEEECCCC--CEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence                  345678889999999999999885  89999999999999996 456666665 78899999999999999999


Q ss_pred             ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCce
Q 035621          241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSIS  320 (387)
Q Consensus       241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~  320 (387)
                      +.|+.|++||...          .....+.+|...|++++|+|++++|++++.||.|++||. +++++..+.+|. +.|+
T Consensus       486 ~~d~~i~iw~~~~----------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~-~~v~  553 (577)
T 2ymu_A          486 SDDKTVKLWNRNG----------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-SSVW  553 (577)
T ss_dssp             ETTSEEEEEETTS----------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS-SCEE
T ss_pred             eCCCEEEEEcCCC----------CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCC-CCEE
Confidence            9999999999643          223334589999999999999999999999999999995 688999998874 5999


Q ss_pred             eEEEEecC
Q 035621          321 EMVIATGI  328 (387)
Q Consensus       321 ~~~~~~~~  328 (387)
                      +++|++..
T Consensus       554 ~~~fs~dg  561 (577)
T 2ymu_A          554 GVAFSPDG  561 (577)
T ss_dssp             EEEECTTS
T ss_pred             EEEEcCCC
Confidence            99997643

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.8e-44  Score=312.98  Aligned_cols=281  Identities=16%  Similarity=0.168  Sum_probs=231.2

Q ss_pred             cC-CCcEEEeeCCCCcEEEEeCCCC-------ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621            5 LP-CNEVILTSSPEGPITAYNPSSG-------AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP   76 (387)
Q Consensus         5 s~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~   76 (387)
                      +| ++++|++|+.|++|++||+.+.       .....+.+|...|.+++|+|+..+.    ++++.|++|++||+.+++.
T Consensus        35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l----~s~s~D~~v~lwd~~~~~~  110 (343)
T 2xzm_R           35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA----ISSSWDKTLRLWDLRTGTT  110 (343)
T ss_dssp             TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE----EEEETTSEEEEEETTSSCE
T ss_pred             cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE----EEEcCCCcEEEEECCCCcE
Confidence            55 8999999999999999998743       4567789999999999999966544    4589999999999999988


Q ss_pred             ccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc---cCCCCCeEEEEEcCCC----------CEEEE
Q 035621           77 LHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF---SAHDKPVSCLKISPDG----------SLLIS  142 (387)
Q Consensus        77 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~----------~~l~~  142 (387)
                      +..+. |...|.+++|+|++++|++++.|+.|++||+... .....   ..|...|.+++|+|++          .++++
T Consensus       111 ~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s  189 (343)
T 2xzm_R          111 YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS  189 (343)
T ss_dssp             EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEE
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEE
Confidence            87765 7789999999999999999999999999999743 33333   2788999999999986          78999


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-CCcEEEEEec
Q 035621          143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL-NGTHLSTVTF  221 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~  221 (387)
                      ++.|+.|++||.             .......+.+|...|.+++|+|++  ++|++++.|+.|++||+. .......+.+
T Consensus       190 ~~~d~~i~iwd~-------------~~~~~~~~~~h~~~v~~~~~s~~g--~~l~sgs~dg~v~iwd~~~~~~~~~~~~~  254 (343)
T 2xzm_R          190 VGWDGRLKVWNT-------------NFQIRYTFKAHESNVNHLSISPNG--KYIATGGKDKKLLIWDILNLTYPQREFDA  254 (343)
T ss_dssp             EETTSEEEEEET-------------TTEEEEEEECCSSCEEEEEECTTS--SEEEEEETTCEEEEEESSCCSSCSEEEEC
T ss_pred             EcCCCEEEEEcC-------------CCceeEEEcCccccceEEEECCCC--CEEEEEcCCCeEEEEECCCCcccceeecC
Confidence            999999999996             234566788999999999999985  899999999999999994 4555666667


Q ss_pred             CCceeEEEeCCCCCeEEEEccCCcEEEEecccccccc--ccccce--eEeecccccccEEEEEEecCCCEEEEEeCCCcE
Q 035621          222 PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQ--MHKGQE--LVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSV  297 (387)
Q Consensus       222 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  297 (387)
                      ...|.+++|+|++.++++ +.|+.|++|++.+.....  ......  ......+|...|++++|+|+|++|++|+.||.|
T Consensus       255 ~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v  333 (343)
T 2xzm_R          255 GSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVI  333 (343)
T ss_dssp             SSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEE
T ss_pred             CCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceE
Confidence            778999999999987764 568889999998754321  100000  000113688899999999999999999999999


Q ss_pred             EEEECCCcc
Q 035621          298 YIWEIEKRQ  306 (387)
Q Consensus       298 ~iwd~~~~~  306 (387)
                      ++|++++++
T Consensus       334 ~~w~~~~g~  342 (343)
T 2xzm_R          334 RTFSFETSA  342 (343)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEccC
Confidence            999987653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-44  Score=311.49  Aligned_cols=280  Identities=16%  Similarity=0.177  Sum_probs=221.2

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCC--ceeEec-cC-CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC---
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSG--AILAHF-SG-SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS---   74 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~---   74 (387)
                      ++|+|+  +||+|+.|+.|++||+.++  +....+ .+ |..+|.+++|+|++.+    +++++.|+.|++||+...   
T Consensus        20 ~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~----las~s~D~~v~iw~~~~~~~~   93 (330)
T 2hes_X           20 FDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSL----LAAGSFDSTVSIWAKEESADR   93 (330)
T ss_dssp             EEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSE----EEEEETTSCEEEEEC------
T ss_pred             eccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCE----EEEEeCCCcEEEEEcccCcCc
Confidence            456776  9999999999999999875  445555 44 9999999999996544    445899999999998542   


Q ss_pred             ----CcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC----ceeEEccCCCCCeEEEEEcCCCCEEEEEeC
Q 035621           75 ----TPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG----DILRSFSAHDKPVSCLKISPDGSLLISGGD  145 (387)
Q Consensus        75 ----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  145 (387)
                          +....+. |...|.+++|+|++++|++|+.|+.|++||++..    +++..+.+|...|.+++|+|++++|++++.
T Consensus        94 ~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~  173 (330)
T 2hes_X           94 TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY  173 (330)
T ss_dssp             -CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred             cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC
Confidence                2333343 7789999999999999999999999999999432    466778899999999999999999999999


Q ss_pred             CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC--------cEEE
Q 035621          146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG--------THLS  217 (387)
Q Consensus       146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------~~~~  217 (387)
                      |++|++||+..          ....++..+.+|...|.+++|+|+..+.+|++++.|++|++||+..+        .+..
T Consensus       174 D~~i~iW~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~  243 (330)
T 2hes_X          174 DDTVRIWKDYD----------DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA  243 (330)
T ss_dssp             TSCEEEEEEET----------TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCeEEEEECCC----------CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee
Confidence            99999999832          12256778899999999999999865578999999999999998754        2333


Q ss_pred             EEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccc-cEEEEEEec--CCCEEEEEe
Q 035621          218 TVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDG-VVVSVMMMN--EGKNLVSAA  292 (387)
Q Consensus       218 ~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~--~~~~l~s~~  292 (387)
                      .+.  |...|.+++|++++ +|++++.||.|++|+...+..      .........|.. .|.+++|+|  ++++|++|+
T Consensus       244 ~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~------~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s  316 (330)
T 2hes_X          244 ILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW------KVFAKRALCHGVYEINVVKWLELNGKTILATGG  316 (330)
T ss_dssp             ECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE------EEEEEESCTTTTSCEEEEEEC-----CCEEEEE
T ss_pred             ecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce------EEEeccccccccceEEEEEEecCCCceEEEEec
Confidence            443  67789999999765 899999999999999875321      122223346777 899999999  789999999


Q ss_pred             CCCcEEEEECCC
Q 035621          293 EDGSVYIWEIEK  304 (387)
Q Consensus       293 ~dg~i~iwd~~~  304 (387)
                      .||+|++||+++
T Consensus       317 ~Dg~v~~W~~~~  328 (330)
T 2hes_X          317 DDGIVNFWSLEK  328 (330)
T ss_dssp             TTSEEEEEEC--
T ss_pred             CCCcEEEEEecc
Confidence            999999999865

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-44  Score=318.59  Aligned_cols=270  Identities=16%  Similarity=0.257  Sum_probs=242.5

Q ss_pred             eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEE
Q 035621           31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYA  109 (387)
Q Consensus        31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i  109 (387)
                      ...+.+|..+|++++|+|+..    .+++++.||.|++||+.+++....+. |...|.+++|+|++++|++|+.|+.|++
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~----~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i  176 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFS----VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL  176 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSS----EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             eEeecccCCcEEEEEEcCCCC----EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            456778999999999999654    45559999999999999999888777 6789999999999999999999999999


Q ss_pred             EeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee
Q 035621          110 ISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI  189 (387)
Q Consensus       110 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  189 (387)
                      ||+.+++++..+.+|...|.+++|+|++++|++++.|+.|++||+            .....+..+.+|...|.++.++|
T Consensus       177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~------------~~~~~~~~~~~h~~~v~~~~~~~  244 (410)
T 1vyh_C          177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV------------QTGYCVKTFTGHREWVRMVRPNQ  244 (410)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET------------TTCCEEEEEECCSSCEEEEEECT
T ss_pred             EeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC------------CCCcEEEEEeCCCccEEEEEECC
Confidence            999999999999999999999999999999999999999999999            56677888999999999999988


Q ss_pred             CCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCC--------------------CCeEEEEccCCcEEE
Q 035621          190 GSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPT--------------------ETDFFAAGSDGLIYK  248 (387)
Q Consensus       190 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~i  248 (387)
                      ++  .+|++|+.|++|++||+.++++...+. |...|.+++|+|+                    +.+|++|+.|+.|++
T Consensus       245 ~g--~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i  322 (410)
T 1vyh_C          245 DG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  322 (410)
T ss_dssp             TS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             CC--CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence            75  899999999999999999999888886 7789999999996                    678999999999999


Q ss_pred             EeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621          249 GLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       249 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  328 (387)
                      ||+.++        . ....+.+|...|++++|+|++++|++|+.||.|++||+.+++++..+..|. ..|+++.|.+..
T Consensus       323 wd~~~~--------~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~  392 (410)
T 1vyh_C          323 WDVSTG--------M-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE-HFVTSLDFHKTA  392 (410)
T ss_dssp             EETTTT--------E-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS-SCEEEEEECSSS
T ss_pred             EECCCC--------c-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC-CcEEEEEEcCCC
Confidence            999873        2 233345799999999999999999999999999999999999999998875 489999887643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-43  Score=303.64  Aligned_cols=275  Identities=20%  Similarity=0.318  Sum_probs=239.6

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|+|++++|++|+.||.|++|+..+++....+.+|...|.+++|+|++.+    +++++.|+.|++||+.+++.+..+.
T Consensus        29 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~~~d~~i~vwd~~~~~~~~~~~  104 (312)
T 4ery_A           29 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL----LVSASDDKTLKIWDVSSGKCLKTLK  104 (312)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE----EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCE----EEEECCCCEEEEEECCCCcEEEEEc
Confidence            579999999999999999999999999999999999999999999996544    4458999999999999998887776


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                       |...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|..+|.+++|+|++++|++++.||.|++||+      
T Consensus       105 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~------  178 (312)
T 4ery_A          105 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT------  178 (312)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET------
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC------
Confidence             6788999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             CCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCc---eeEEEeCCCCC
Q 035621          161 HTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCA---IMGLALDPTET  235 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~---v~~~~~~~~~~  235 (387)
                            .....+..+ ..+..++..++|+|++  ++|++++.|+.|++||+++++.+..+. +...   +......+++.
T Consensus       179 ------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (312)
T 4ery_A          179 ------ASGQCLKTLIDDDNPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK  250 (312)
T ss_dssp             ------TTCCEEEEECCSSCCCEEEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSC
T ss_pred             ------CCCceeeEEeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCc
Confidence                  344444444 3466789999999885  899999999999999999999988886 3222   33334446788


Q ss_pred             eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe--CCCcEEEEECC
Q 035621          236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA--EDGSVYIWEIE  303 (387)
Q Consensus       236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~  303 (387)
                      ++++|+.||.|++||+...         .....+.+|...|.+++|+|++++|++++  .|+.|++|+.+
T Consensus       251 ~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          251 WIVSGSEDNLVYIWNLQTK---------EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEEECCTTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEEECCCCEEEEEECCCc---------hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            9999999999999999873         33344568999999999999999999987  69999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-43  Score=313.52  Aligned_cols=275  Identities=17%  Similarity=0.253  Sum_probs=230.9

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCC------------------CceeEEEcCccceeeeccccCCCC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRS------------------PRRGLTFAGKPFIAASHISPTTGS   63 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~~~~~~~~~~~d   63 (387)
                      ++|||||++||+|+ ++.++||++.+++.+..+..|..                  .|++++|+|++.++    ++++.|
T Consensus        70 v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l----~s~~~d  144 (393)
T 1erj_A           70 VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL----ATGAED  144 (393)
T ss_dssp             EEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE----EEEETT
T ss_pred             EEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE----EEEcCC
Confidence            57999999999987 68999999999998888765542                  38999999965544    458999


Q ss_pred             CeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEE
Q 035621           64 GSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLI  141 (387)
Q Consensus        64 ~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~  141 (387)
                      +.|++||+.+++.+..+. |...|.+++|+|++++|++++.|+.|++||++++++...+. +...+.+++|+| ++++++
T Consensus       145 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~  223 (393)
T 1erj_A          145 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIA  223 (393)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEE
T ss_pred             CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEE
Confidence            999999999998877776 77889999999999999999999999999999998887775 567899999999 899999


Q ss_pred             EEeCCCcEEEEeCCcccccCCCCCCCCccceEee-------eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc
Q 035621          142 SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-------VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT  214 (387)
Q Consensus       142 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  214 (387)
                      +++.|+.|++||+.            ....+..+       .+|...|.+++|+|++  ++|++++.|++|++||+++..
T Consensus       224 ~~s~d~~v~iwd~~------------~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g--~~l~s~s~d~~v~~wd~~~~~  289 (393)
T 1erj_A          224 AGSLDRAVRVWDSE------------TGFLVERLDSENESGTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNLQNAN  289 (393)
T ss_dssp             EEETTSCEEEEETT------------TCCEEEEEC------CCCSSCEEEEEECTTS--SEEEEEETTSEEEEEEC----
T ss_pred             EEcCCCcEEEEECC------------CCcEEEeecccccCCCCCCCCEEEEEECCCC--CEEEEEeCCCEEEEEECCCCC
Confidence            99999999999983            33333333       5789999999999885  899999999999999997642


Q ss_pred             ------------EEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE
Q 035621          215 ------------HLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM  281 (387)
Q Consensus       215 ------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  281 (387)
                                  +...+. |...|.+++|+|++.+|++++.|+.|++||..++.         ....+.+|...|.+++|
T Consensus       290 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~---------~~~~l~~h~~~v~~v~~  360 (393)
T 1erj_A          290 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN---------PLLMLQGHRNSVISVAV  360 (393)
T ss_dssp             -----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC---------EEEEEECCSSCEEEEEE
T ss_pred             CcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe---------EEEEECCCCCCEEEEEe
Confidence                        333443 67789999999999999999999999999998732         23334589999999999


Q ss_pred             ec------CCCEEEEEeCCCcEEEEECCCc
Q 035621          282 MN------EGKNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       282 s~------~~~~l~s~~~dg~i~iwd~~~~  305 (387)
                      ++      ++++|++|+.||+|++|++...
T Consensus       361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          361 ANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             cCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            86      6789999999999999998654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.6e-43  Score=303.66  Aligned_cols=272  Identities=18%  Similarity=0.282  Sum_probs=237.0

Q ss_pred             CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCc
Q 035621           28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGN  106 (387)
Q Consensus        28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~  106 (387)
                      .+...++.+|..+|.+++|+|++.+    +++++.||.|++||+.+++.+..+. +...|.+++|+|++++|++|+.|+.
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~----l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~  120 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRL----LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSE----EEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred             chhheeecCCCCceEEEEECCCCCE----EEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCe
Confidence            4556788999999999999996554    4459999999999999998877766 5678999999999999999999999


Q ss_pred             EEEEeCCCC----ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621          107 VYAISVPKG----DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV  182 (387)
Q Consensus       107 i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  182 (387)
                      +++|++.++    +....+.+|...|.++.|++++. +++++.|+.|++||+            .....+..+.+|...|
T Consensus       121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~------------~~~~~~~~~~~h~~~v  187 (340)
T 1got_B          121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDI------------ETGQQTTTFTGHTGDV  187 (340)
T ss_dssp             EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEET------------TTTEEEEEECCCSSCE
T ss_pred             EEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEEC------------CCCcEEEEEcCCCCce
Confidence            999999775    34566789999999999998765 899999999999999            5667788899999999


Q ss_pred             EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc
Q 035621          183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK  261 (387)
Q Consensus       183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  261 (387)
                      .+++|+|++  .++++|+.|++|++||++++.+...+. |...|.+++|+|++++|++++.||.|++||++...      
T Consensus       188 ~~~~~~~~~--~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~------  259 (340)
T 1got_B          188 MSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ------  259 (340)
T ss_dssp             EEEEECTTS--SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------
T ss_pred             EEEEECCCC--CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc------
Confidence            999999975  899999999999999999999998887 77899999999999999999999999999998732      


Q ss_pred             cceeEee-cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          262 GQELVTL-ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       262 ~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                        .+..+ ...+...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|. +.|+++.|++.
T Consensus       260 --~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~s~d  323 (340)
T 1got_B          260 --ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD-NRVSCLGVTDD  323 (340)
T ss_dssp             --EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECTT
T ss_pred             --EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC-CcEEEEEEcCC
Confidence              22222 12334579999999999999999999999999999999999998875 58999988754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.8e-43  Score=303.81  Aligned_cols=286  Identities=17%  Similarity=0.231  Sum_probs=239.7

Q ss_pred             ccccCC-CcEEEeeCCCCcEEEEeCCCCc-----eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC
Q 035621            2 LHHLPC-NEVILTSSPEGPITAYNPSSGA-----ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST   75 (387)
Q Consensus         2 l~~s~~-~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~   75 (387)
                      |+|+|+ +++||+|+.||+|+|||+.+.+     +...+.+|...|.+++|+|++.++    ++++.|+.|++|+.....
T Consensus        44 v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l----~s~~~d~~i~~~~~~~~~  119 (340)
T 4aow_A           44 IATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA----LSGSWDGTLRLWDLTTGT  119 (340)
T ss_dssp             EEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEE----EEEETTSEEEEEETTTTE
T ss_pred             EEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEE----EEEcccccceEEeecccc
Confidence            589998 6899999999999999987643     467789999999999999966544    458999999999998876


Q ss_pred             cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce-eEEccCCCCCeEEEEEcCCC--CEEEEEeCCCcEEE
Q 035621           76 PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI-LRSFSAHDKPVSCLKISPDG--SLLISGGDDGVIAT  151 (387)
Q Consensus        76 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i  151 (387)
                      ...... +...+..+.+++++++|++++.|+.+++||+..... .....+|...+..++|++++  .++++++.|+.|++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i  199 (340)
T 4aow_A          120 TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV  199 (340)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred             eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE
Confidence            665554 556788899999999999999999999999876644 34456899999999999864  57889999999999


Q ss_pred             EeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeC
Q 035621          152 VPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALD  231 (387)
Q Consensus       152 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~  231 (387)
                      ||+            ........+.+|..+|.+++|+|++  ++|++++.|+.|++||+++.+++..+.+...+.+++|+
T Consensus       200 ~d~------------~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~  265 (340)
T 4aow_A          200 WNL------------ANCKLKTNHIGHTGYLNTVTVSPDG--SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFS  265 (340)
T ss_dssp             EET------------TTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred             EEC------------CCCceeeEecCCCCcEEEEEECCCC--CEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecC
Confidence            999            5667788889999999999999875  89999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621          232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  306 (387)
                      |++. +++++.|+.|++||++...................|...|++++|+|++++|++|+.||.|+|||+++|+
T Consensus       266 ~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          266 PNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             SSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            9875 5566779999999998765444333333334455789999999999999999999999999999999885

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-43  Score=308.76  Aligned_cols=284  Identities=14%  Similarity=0.204  Sum_probs=253.2

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+..+    +++++.||.|++||+.+++.+..+.
T Consensus        38 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~~~dg~i~iwd~~~~~~~~~~~  113 (369)
T 3zwl_B           38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKY----CVTGSADYSIKLWDVSNGQCVATWK  113 (369)
T ss_dssp             EEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE----EEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCE----EEEEeCCCeEEEEECCCCcEEEEee
Confidence            679999999999999999999999999999999999999999999996543    4458999999999999999999988


Q ss_pred             CCCCeeeEEeccCCCEEEEecCC-----CcEEEEeCCCCc-----------eeEEccCCCC--CeEEEEEcCCCCEEEEE
Q 035621           82 VPEPVAPLATTADGSYLFTGGLS-----GNVYAISVPKGD-----------ILRSFSAHDK--PVSCLKISPDGSLLISG  143 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~l~~~  143 (387)
                      +...+.+++|+|+++++++++.+     +.|.+||+....           ....+..|..  .+.+++|+|++++|+++
T Consensus       114 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  193 (369)
T 3zwl_B          114 SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG  193 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE
T ss_pred             cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE
Confidence            99999999999999999999998     999999997653           3344455665  89999999999999999


Q ss_pred             eCCCcEEEEeCCcccccCCCCCCCC-ccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC
Q 035621          144 GDDGVIATVPIFQLVDEHTDDKNPD-DLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP  222 (387)
Q Consensus       144 ~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  222 (387)
                      +.||.|++||+            .. ...+..+..|...|.+++|+|++  .+|++++.|+.|++||+++++.+..+.+.
T Consensus       194 ~~dg~i~i~d~------------~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  259 (369)
T 3zwl_B          194 HKDGKISKYDV------------SNNYEYVDSIDLHEKSISDMQFSPDL--TYFITSSRDTNSFLVDVSTLQVLKKYETD  259 (369)
T ss_dssp             ETTSEEEEEET------------TTTTEEEEEEECCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             cCCCEEEEEEC------------CCCcEeEEEEecCCCceeEEEECCCC--CEEEEecCCceEEEEECCCCceeeeecCC
Confidence            99999999999            33 56778888999999999999875  89999999999999999999999999999


Q ss_pred             CceeEEEeCCCCCeEEEEccCC--------------cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEE
Q 035621          223 CAIMGLALDPTETDFFAAGSDG--------------LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNL  288 (387)
Q Consensus       223 ~~v~~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  288 (387)
                      ..+.+++|+|+++++++++.++              .+++||....         .....+.+|...|++++|+|++++|
T Consensus       260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l  330 (369)
T 3zwl_B          260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE---------EEIGRVQGHFGPLNTVAISPQGTSY  330 (369)
T ss_dssp             SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC---------CEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC---------cchhheecccCcEEEEEECCCCCEE
Confidence            9999999999999999999988              7899998763         2233345799999999999999999


Q ss_pred             EEEeCCCcEEEEECCCccEEEEee
Q 035621          289 VSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       289 ~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      ++++.||.|++|+++++.....+.
T Consensus       331 ~s~~~dg~v~iw~~~~~~~~~~~~  354 (369)
T 3zwl_B          331 ASGGEDGFIRLHHFEKSYFDFKYD  354 (369)
T ss_dssp             EEEETTSEEEEEEECHHHHTCCCH
T ss_pred             EEEcCCCeEEEEECccccchhHHH
Confidence            999999999999999887665554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.3e-42  Score=299.00  Aligned_cols=295  Identities=17%  Similarity=0.202  Sum_probs=255.2

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI-   80 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~-   80 (387)
                      ++|+|||++++++..++.+.+|+...........+|..+|.+++|+|++.+.+.    ++ ||.|++||+.+++....+ 
T Consensus        15 ~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~----~~-dg~i~iw~~~~~~~~~~~~   89 (337)
T 1gxr_A           15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYT----GG-KGCVKVWDISHPGNKSPVS   89 (337)
T ss_dssp             EEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEE----EC-BSEEEEEETTSTTCCSCSE
T ss_pred             EEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEE----cC-CCeEEEEECCCCCceeeee
Confidence            579999999999988888878776655555555579999999999996655443    66 999999999877644333 


Q ss_pred             -----CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc--eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621           81 -----PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD--ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP  153 (387)
Q Consensus        81 -----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  153 (387)
                           .+...+.+++|+|++++|++++.||.|++||+++++  ....+..|...|.+++|+|+++++++++.||.|++||
T Consensus        90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d  169 (337)
T 1gxr_A           90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD  169 (337)
T ss_dssp             EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence                 467889999999999999999999999999999887  5667788999999999999999999999999999999


Q ss_pred             CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCC
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPT  233 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  233 (387)
                      +            ........+..|...+.+++|+|++  ++|++++.|+.|++||+++++.+..+.+...+.+++|+|+
T Consensus       170 ~------------~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~  235 (337)
T 1gxr_A          170 L------------HNQTLVRQFQGHTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT  235 (337)
T ss_dssp             T------------TTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTT
T ss_pred             C------------CCCceeeeeecccCceEEEEECCCC--CEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCC
Confidence            9            5566778888999999999999975  8999999999999999999999999999999999999999


Q ss_pred             CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621          234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      ++++++++.++.|++||+....         .. ....|...|.+++|+|++++|++++.||.|++||+.+++.+.... 
T Consensus       236 ~~~l~~~~~~~~i~~~~~~~~~---------~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-  304 (337)
T 1gxr_A          236 GEWLAVGMESSNVEVLHVNKPD---------KY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-  304 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTSSC---------EE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-
T ss_pred             CCEEEEEcCCCcEEEEECCCCC---------eE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-
Confidence            9999999999999999998732         11 234789999999999999999999999999999999999886554 


Q ss_pred             ccCCCceeEEEEec
Q 035621          314 ELAGSISEMVIATG  327 (387)
Q Consensus       314 ~~~~~v~~~~~~~~  327 (387)
                       +...++++.|++.
T Consensus       305 -~~~~v~~~~~s~~  317 (337)
T 1gxr_A          305 -ESSSVLSCDISVD  317 (337)
T ss_dssp             -CSSCEEEEEECTT
T ss_pred             -CCCcEEEEEECCC
Confidence             3457888888764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.2e-42  Score=299.77  Aligned_cols=275  Identities=15%  Similarity=0.201  Sum_probs=239.1

Q ss_pred             ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNV  107 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i  107 (387)
                      +...++.+|..+|++++|+|++.    .+++++.|++|++||..+++....+. +...|.+++|+|++.++++|+.|+.+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~----~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i  130 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKR----RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKC  130 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSS----EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCC----EEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCE
Confidence            55678899999999999999654    44559999999999998888776665 45689999999999999999999999


Q ss_pred             EEEeCCCC------ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC
Q 035621          108 YAISVPKG------DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS  181 (387)
Q Consensus       108 ~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (387)
                      ++|++...      .....+..|...|.+++|+|++..|++++.|++|++||+            .....+..+.+|...
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~------------~~~~~~~~~~~h~~~  198 (354)
T 2pbi_B          131 SVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDV------------ESGQLLQSFHGHGAD  198 (354)
T ss_dssp             EEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEET------------TTCCEEEEEECCSSC
T ss_pred             EEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeC------------CCCeEEEEEcCCCCC
Confidence            99998643      345566789999999999999999999999999999999            566788899999999


Q ss_pred             eEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccc
Q 035621          182 VTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMH  260 (387)
Q Consensus       182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  260 (387)
                      |.+++++|..++++|++|+.||+|++||+++++++..+. |...|.+++|+|++.+|++++.|+.|++||++....    
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~----  274 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE----  274 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE----
Confidence            999999997667899999999999999999999998887 778999999999999999999999999999987321    


Q ss_pred             ccceeEee-cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621          261 KGQELVTL-ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       261 ~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  328 (387)
                          ...+ ...+...+.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|. +.|+++.|++..
T Consensus       275 ----~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~-~~v~~l~~spdg  338 (354)
T 2pbi_B          275 ----VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE-NRVSTLRVSPDG  338 (354)
T ss_dssp             ----EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS-SCEEEEEECTTS
T ss_pred             ----EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC-CcEEEEEECCCC
Confidence                1111 11234578999999999999999999999999999999999998774 589999987643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-42  Score=307.62  Aligned_cols=290  Identities=20%  Similarity=0.240  Sum_probs=239.5

Q ss_pred             ccCCCcEEEeeCCCCcEEEEeCCCCceeEeccC-CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621            4 HLPCNEVILTSSPEGPITAYNPSSGAILAHFSG-SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-   81 (387)
Q Consensus         4 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-   81 (387)
                      +++++..+++++.||.|++||+.+++....+.. |...|.+++|+|++.+    +++++.||.|++||+.+++.+..+. 
T Consensus        99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~----l~~~~~dg~i~iwd~~~~~~~~~~~~  174 (401)
T 4aez_A           99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSF----LSVGLGNGLVDIYDVESQTKLRTMAG  174 (401)
T ss_dssp             EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSE----EEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCE----EEEECCCCeEEEEECcCCeEEEEecC
Confidence            444456688888999999999999998877765 7889999999996544    4448899999999999998887775 


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCC-CCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVP-KGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                      |...|.+++|  +++++++++.||.|++||++ ....+..+.+|...|.+++|+|++++|++++.|+.|++||+      
T Consensus       175 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~------  246 (401)
T 4aez_A          175 HQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA------  246 (401)
T ss_dssp             CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET------
T ss_pred             CCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccC------
Confidence            6788999999  45799999999999999998 56677888899999999999999999999999999999999      


Q ss_pred             CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe--CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEE
Q 035621          161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS--MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFF  238 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  238 (387)
                            ........+..|...|.+++|+|++ ..++++++  .|+.|++||+.+++.+..+.+...+.+++|+|++++++
T Consensus       247 ------~~~~~~~~~~~~~~~v~~~~~~p~~-~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  319 (401)
T 4aez_A          247 ------RSSIPKFTKTNHNAAVKAVAWCPWQ-SNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIM  319 (401)
T ss_dssp             ------TCSSEEEEECCCSSCCCEEEECTTS-TTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEE
T ss_pred             ------CCCCccEEecCCcceEEEEEECCCC-CCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEE
Confidence                  4566777888999999999999975 46777765  79999999999999999999999999999999999999


Q ss_pred             EE--ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccC
Q 035621          239 AA--GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA  316 (387)
Q Consensus       239 ~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  316 (387)
                      ++  +.||.|++|++.....       .....+.+|...|.+++|+|++++|++++.||.|++|++.+++.+........
T Consensus       320 ~~~g~~dg~i~v~~~~~~~~-------~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  392 (401)
T 4aez_A          320 STHGFPDNNLSIWSYSSSGL-------TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITK  392 (401)
T ss_dssp             EEECTTTCEEEEEEEETTEE-------EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------------
T ss_pred             EEeecCCCcEEEEecCCccc-------eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccccccC
Confidence            94  4899999999987321       11222357999999999999999999999999999999999998877654444


Q ss_pred             CCc
Q 035621          317 GSI  319 (387)
Q Consensus       317 ~~v  319 (387)
                      ...
T Consensus       393 ~~~  395 (401)
T 4aez_A          393 TPS  395 (401)
T ss_dssp             ---
T ss_pred             CCc
Confidence            333

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.2e-41  Score=316.09  Aligned_cols=291  Identities=23%  Similarity=0.354  Sum_probs=253.1

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|+|++++|++++.|+.|++||. +++.+..+.+|..+|.+++|+|++..    +++++.|+.+++|+.. ++....+.
T Consensus       227 ~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~----l~~~~~d~~i~~w~~~-~~~~~~~~  300 (577)
T 2ymu_A          227 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQT----IASASDDKTVKLWNRN-GQLLQTLT  300 (577)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSE----EEEEETTSCEEEEETT-SCEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCE----EEEEeCCCEEEEEeCC-CcEEEEEe
Confidence            579999999999999999999995 67888899999999999999996544    4458899999999974 44444444


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                       |...|.+++|+|+++++++++.|+.|++||+. ++.+..+.+|...+.+++|+|+++++++++.|+.|++||.      
T Consensus       301 ~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~------  373 (577)
T 2ymu_A          301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR------  373 (577)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET------
T ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC------
Confidence             77899999999999999999999999999975 4556778889999999999999999999999999999997      


Q ss_pred             CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEE
Q 035621          161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFA  239 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~  239 (387)
                             ....+..+..|...|.+++|+|++  ++|++++.|+.|++||. +++.+..+. +...|.+++|+|++++|++
T Consensus       374 -------~~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~  443 (577)
T 2ymu_A          374 -------NGQLLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIAS  443 (577)
T ss_dssp             -------TCCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             -------CCCEEEEecCCCCCeEEEEECCCC--CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence                   445677888999999999999885  89999999999999995 566666666 7789999999999999999


Q ss_pred             EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCc
Q 035621          240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSI  319 (387)
Q Consensus       240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  319 (387)
                      ++.|+.|++||...          .....+.+|...|++++|+|++++|++++.|+.|++||. +++++..+.+|. ..|
T Consensus       444 ~~~d~~v~~w~~~~----------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~-~~v  511 (577)
T 2ymu_A          444 ASDDKTVKLWNRNG----------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-SSV  511 (577)
T ss_dssp             EETTSEEEEEETTS----------CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCS-SCE
T ss_pred             EcCCCEEEEEECCC----------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCC-CCE
Confidence            99999999999653          223334579999999999999999999999999999995 688899998874 589


Q ss_pred             eeEEEEec
Q 035621          320 SEMVIATG  327 (387)
Q Consensus       320 ~~~~~~~~  327 (387)
                      ++++|++.
T Consensus       512 ~~l~~s~d  519 (577)
T 2ymu_A          512 RGVAFSPD  519 (577)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEcCC
Confidence            99988763

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.4e-42  Score=304.61  Aligned_cols=299  Identities=12%  Similarity=0.071  Sum_probs=244.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~   79 (387)
                      ++|+|++++|++|+.||.|++||+.+++  .+..+.+|...|.+++|+|++.+    +++++.|+.|++||+.+++....
T Consensus        14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~~~~~dg~i~vwd~~~~~~~~~   89 (372)
T 1k8k_C           14 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR----IVTCGTDRNAYVWTLKGRTWKPT   89 (372)
T ss_dssp             EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTE----EEEEETTSCEEEEEEETTEEEEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCE----EEEEcCCCeEEEEECCCCeeeee
Confidence            5799999999999999999999999887  88899999999999999996544    44488999999999988864333


Q ss_pred             ---cCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce----eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621           80 ---IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI----LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATV  152 (387)
Q Consensus        80 ---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  152 (387)
                         ..+...|.+++|+|++++|++++.|+.|++||++.++.    ......|...|.+++|+|++++|++++.||.|++|
T Consensus        90 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~  169 (372)
T 1k8k_C           90 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF  169 (372)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEE
Confidence               44778999999999999999999999999999988763    33346789999999999999999999999999999


Q ss_pred             eCCcccccCC------CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCce
Q 035621          153 PIFQLVDEHT------DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAI  225 (387)
Q Consensus       153 d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v  225 (387)
                      |++.......      .........+..+..|...|.+++|+|++  ++|++++.|+.|++||+++++++..+. +...+
T Consensus       170 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v  247 (372)
T 1k8k_C          170 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG--SRVAWVSHDSTVCLADADKKMAVATLASETLPL  247 (372)
T ss_dssp             ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS--SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCE
T ss_pred             EcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC--CEEEEEeCCCEEEEEECCCCceeEEEccCCCCe
Confidence            9742111000      00013456777888999999999999875  899999999999999999999998887 56689


Q ss_pred             eEEEeCCCCCeEEEEccCCcEEEEeccc--ccccc------------------------cccccee------Eeeccccc
Q 035621          226 MGLALDPTETDFFAAGSDGLIYKGLLKY--QSRQQ------------------------MHKGQEL------VTLANRHD  273 (387)
Q Consensus       226 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~------------------------~~~~~~~------~~~~~~~~  273 (387)
                      .+++|+|++.+++++ .|+.|++|++..  +....                        ...+...      ..+..+|.
T Consensus       248 ~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  326 (372)
T 1k8k_C          248 LAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHK  326 (372)
T ss_dssp             EEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSS
T ss_pred             EEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccccccc
Confidence            999999999988887 899999999987  32100                        0001111      22334899


Q ss_pred             ccEEEEEEe-cCC---CEEEEEeCCCcEEEEECCCccE
Q 035621          274 GVVVSVMMM-NEG---KNLVSAAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       274 ~~v~~~~~s-~~~---~~l~s~~~dg~i~iwd~~~~~~  307 (387)
                      ..|++++|. ++|   .+|++|+.||.|++||+.+++.
T Consensus       327 ~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          327 NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             SCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             CCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence            999999976 666   8999999999999999987654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.2e-42  Score=305.61  Aligned_cols=302  Identities=14%  Similarity=0.124  Sum_probs=245.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI-   80 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~-   80 (387)
                      ++|+|++++|++|+.||.|++||+.+++....+..| ..+....|++++..    +++++.|+.|++||+.+++....+ 
T Consensus        62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~~~~~~~~  136 (420)
T 3vl1_A           62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRR----FILGTTEGDIKVLDSNFNLQREIDQ  136 (420)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCE----EEEEETTSCEEEECTTSCEEEEETT
T ss_pred             eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCE----EEEEECCCCEEEEeCCCcceeeecc
Confidence            579999999999999999999999988877777666 33444567775543    445899999999999998888776 


Q ss_pred             CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                      .|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+      
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~------  210 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC------  210 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEET------
T ss_pred             cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC------
Confidence            58889999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             CCCCCCCCccceEeeec---cCCCeEEEEEeeC-------------------CCCceEEEEeCCCcEEEEeCCCCcEEEE
Q 035621          161 HTDDKNPDDLMLQKFVA---HNDSVTAITCCIG-------------------SFNSIIISCSMDCTCKFWRLLNGTHLST  218 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~-------------------~~~~~l~s~~~d~~i~iwd~~~~~~~~~  218 (387)
                            .....+..+..   |...+.++++.+.                   +++++|++++.||.|++||+++++.+..
T Consensus       211 ------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  284 (420)
T 3vl1_A          211 ------GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ  284 (420)
T ss_dssp             ------TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ------CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE
Confidence                  34455555553   4456666665432                   2358999999999999999999998887


Q ss_pred             Ee--cCCceeEEEeCCCCC-eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621          219 VT--FPCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG  295 (387)
Q Consensus       219 ~~--~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  295 (387)
                      +.  +...+.+++|+|++. +|++++.||.|++||++....       .+..+...|...|.++.+ +++++|++++.||
T Consensus       285 ~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~  356 (420)
T 3vl1_A          285 LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC-------PVGEFLINEGTPINNVYF-AAGALFVSSGFDT  356 (420)
T ss_dssp             ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-------CSEEEEESTTSCEEEEEE-ETTEEEEEETTTE
T ss_pred             cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC-------chhhhhccCCCCceEEEe-CCCCEEEEecCCc
Confidence            76  567899999999998 999999999999999987421       122333347778888855 5788999999999


Q ss_pred             cEEEEECCCccE---------EEEeecccCCCceeEEEEecCC
Q 035621          296 SVYIWEIEKRQV---------VMVLKNELAGSISEMVIATGIG  329 (387)
Q Consensus       296 ~i~iwd~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~  329 (387)
                      .|++|++...+.         ...+.. +.+.|.+++|++...
T Consensus       357 ~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~  398 (420)
T 3vl1_A          357 SIKLDIISDPESERPAIEFETPTFLVS-NDDAVSQFCYVSDDE  398 (420)
T ss_dssp             EEEEEEECCTTCCSCEECTTSCEEECC-SSCCCCEEEEECCSS
T ss_pred             cEEEEeccCCCCCccceeccCccEEcc-CCcceEEEEEccCCC
Confidence            999999887422         112222 345788888887654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.1e-42  Score=300.05  Aligned_cols=283  Identities=16%  Similarity=0.236  Sum_probs=212.1

Q ss_pred             EEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCC------CCeEEEEEccCCCccccc----
Q 035621           11 ILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTG------SGSVHLYNLWSSTPLHNI----   80 (387)
Q Consensus        11 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------d~~v~vw~~~~~~~~~~~----   80 (387)
                      ++.++.+.....|++....    ...|...|++++|+|++.++++    ++.      |+.+++|+..++.+...+    
T Consensus        19 ~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las----~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~   90 (357)
T 4g56_B           19 YFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLA----ASSLSSRTWGGSIWVFKDPEGAPNESLCTAG   90 (357)
T ss_dssp             -------------------------CCCSEEEEEEECSSSCEEEE----EECSSSSSCCEEEEEESSCC---CGGGCSEE
T ss_pred             EEecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEE----EcCCCCccccCeEEEEECCCCCcceeEeccc
Confidence            3444456778889875433    3569999999999997765554    665      788999998887654433    


Q ss_pred             -CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE----EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621           81 -PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR----SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF  155 (387)
Q Consensus        81 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  155 (387)
                       .+...|.+++|+|++. +++++.||.|++||+.+++...    ...+|...|++++|+|++++|++++.|+.|++||+ 
T Consensus        91 ~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~-  168 (357)
T 4g56_B           91 VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL-  168 (357)
T ss_dssp             EECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET-
T ss_pred             CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC-
Confidence             3678899999999986 5567789999999998876543    23479999999999999999999999999999999 


Q ss_pred             cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceeEEEeCC
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT---FPCAIMGLALDP  232 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~  232 (387)
                                 .....+..+.+|...|.+++|++++ ..++++++.|++|++||++++++...+.   +...+.+++|+|
T Consensus       169 -----------~~~~~~~~~~~h~~~v~~v~~s~~~-~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp  236 (357)
T 4g56_B          169 -----------SQKAVLKSYNAHSSEVNCVAACPGK-DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP  236 (357)
T ss_dssp             -----------TTTEEEEEECCCSSCEEEEEECTTC-SSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECT
T ss_pred             -----------CCCcEEEEEcCCCCCEEEEEEccCC-CceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhh
Confidence                       5677888899999999999999885 4689999999999999999988776654   456799999999


Q ss_pred             CC-CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCccEEEE
Q 035621          233 TE-TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWEIEKRQVVMV  310 (387)
Q Consensus       233 ~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~  310 (387)
                      ++ .+|++|+.|+.|++||++....         ...+.+|...|++++|+|++ ++|++|+.||+|+|||+++++++..
T Consensus       237 ~~~~~la~g~~d~~i~~wd~~~~~~---------~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~  307 (357)
T 4g56_B          237 EKDDTFACGDETGNVSLVNIKNPDS---------AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD  307 (357)
T ss_dssp             TSTTEEEEEESSSCEEEEESSCGGG---------CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             cccceEEEeecccceeEEECCCCcE---------eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE
Confidence            85 6788899999999999987322         22345799999999999987 5899999999999999999998876


Q ss_pred             eecccCCCceeEEEEe
Q 035621          311 LKNELAGSISEMVIAT  326 (387)
Q Consensus       311 ~~~~~~~~v~~~~~~~  326 (387)
                      + +| .+.|++++|++
T Consensus       308 ~-~H-~~~V~~vafsP  321 (357)
T 4g56_B          308 L-SH-RDFVTGVAWSP  321 (357)
T ss_dssp             C-CC-SSCEEEEEECS
T ss_pred             C-CC-CCCEEEEEEeC
Confidence            6 44 56899998875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.4e-42  Score=299.33  Aligned_cols=280  Identities=11%  Similarity=0.066  Sum_probs=221.8

Q ss_pred             ccccCCCcEEEeeCCC-------CcEEEEeCCCCce----------eEeccCCCCCceeEEEcCccceee-----ecccc
Q 035621            2 LHHLPCNEVILTSSPE-------GPITAYNPSSGAI----------LAHFSGSRSPRRGLTFAGKPFIAA-----SHISP   59 (387)
Q Consensus         2 l~~s~~~~~l~~~~~d-------g~i~iwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~   59 (387)
                      ++|+||+++|++|+.+       +.|++|++..+..          ...+.+|...|.+++++++..+.+     ..+++
T Consensus        20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s   99 (365)
T 4h5i_A           20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKITQ   99 (365)
T ss_dssp             EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHHHH
T ss_pred             EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEEEE
Confidence            6899999999998653       3599999875432          134678888999999887644432     24667


Q ss_pred             CCCCCeEEEEEccCCCcccc-------c---CCCCCeeeEEeccCCCEEEEe--cCCCcEEEEeCCCCceeEEccCCCCC
Q 035621           60 TTGSGSVHLYNLWSSTPLHN-------I---PVPEPVAPLATTADGSYLFTG--GLSGNVYAISVPKGDILRSFSAHDKP  127 (387)
Q Consensus        60 ~~~d~~v~vw~~~~~~~~~~-------~---~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~  127 (387)
                      ++.|+.+++|++........       .   .+...+.+++|+|||++++++  +.|++|++||+++++++..+. |...
T Consensus       100 ~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~  178 (365)
T 4h5i_A          100 GKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGE  178 (365)
T ss_dssp             TSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSC
T ss_pred             ecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCc
Confidence            88899999999876543211       1   123458899999999998754  478999999999999988886 7788


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccc--eEeeeccCCCeEEEEEeeCCCCceEEEEeCCC--
Q 035621          128 VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLM--LQKFVAHNDSVTAITCCIGSFNSIIISCSMDC--  203 (387)
Q Consensus       128 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~--  203 (387)
                      |.+++|+|+++++++++.++ +++|+..            ....  ......|...|.+++|+|++  .++++++.|+  
T Consensus       179 V~~v~fspdg~~l~s~s~~~-~~~~~~~------------~~~~~~~~~~~~~~~~v~~v~fspdg--~~l~~~s~d~~~  243 (365)
T 4h5i_A          179 VKDLHFSTDGKVVAYITGSS-LEVISTV------------TGSCIARKTDFDKNWSLSKINFIADD--TVLIAASLKKGK  243 (365)
T ss_dssp             CCEEEECTTSSEEEEECSSC-EEEEETT------------TCCEEEEECCCCTTEEEEEEEEEETT--EEEEEEEESSSC
T ss_pred             eEEEEEccCCceEEecccee-EEEEEec------------cCcceeeeecCCCCCCEEEEEEcCCC--CEEEEEecCCcc
Confidence            99999999999999998665 5555552            2222  23445688899999999985  8999998887  


Q ss_pred             --cEEEEeCCCCcEE----EEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621          204 --TCKFWRLLNGTHL----STVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV  276 (387)
Q Consensus       204 --~i~iwd~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  276 (387)
                        .+++|++......    ..+. +...|++++|+|+|++|++|+.|+.|++||+.+        +..+..++.+|...|
T Consensus       244 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~--------~~~~~~~~~gH~~~V  315 (365)
T 4h5i_A          244 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD--------LSMSKIFKQAHSFAI  315 (365)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT--------TEEEEEETTSSSSCE
T ss_pred             eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC--------CcEEEEecCcccCCE
Confidence              6889998776542    2233 667899999999999999999999999999987        445555667899999


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621          277 VSVMMMNEGKNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       277 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  305 (387)
                      ++++|+|||++|++|+.|++|+|||+..+
T Consensus       316 ~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          316 TEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999999999999999999643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-42  Score=306.21  Aligned_cols=297  Identities=15%  Similarity=0.218  Sum_probs=252.4

Q ss_pred             ccccCCCc-EEEeeCCCCcEEEEeC----CCCc------eeEeccC----------CCCCceeEEEcCccceeeeccccC
Q 035621            2 LHHLPCNE-VILTSSPEGPITAYNP----SSGA------ILAHFSG----------SRSPRRGLTFAGKPFIAASHISPT   60 (387)
Q Consensus         2 l~~s~~~~-~l~~~~~dg~i~iwd~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~   60 (387)
                      ++|+|+++ +||+|+.||.|++||+    .+++      ....+..          |...|.+++|+|++.+    ++++
T Consensus        51 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~~  126 (425)
T 1r5m_A           51 STWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS----IVTG  126 (425)
T ss_dssp             EEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE----EEEE
T ss_pred             EEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE----EEEE
Confidence            57999999 9999999999999999    8887      4555544          6779999999996544    4448


Q ss_pred             CCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCC------------
Q 035621           61 TGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP------------  127 (387)
Q Consensus        61 ~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------  127 (387)
                      +.||.|++|| .+++.+..+. |...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...            
T Consensus       127 ~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (425)
T 1r5m_A          127 VENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGD  205 (425)
T ss_dssp             ETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------
T ss_pred             eCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCC
Confidence            8999999999 5666666665 7789999999999999999999999999999999999888877776            


Q ss_pred             ---eEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCc
Q 035621          128 ---VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT  204 (387)
Q Consensus       128 ---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~  204 (387)
                         +.+++|+|++ .+++++.||.|++||+            .....+..+..|...|.+++|+|++  ++|++++.|+.
T Consensus       206 ~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~------------~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~  270 (425)
T 1r5m_A          206 GSLGVDVEWVDDD-KFVIPGPKGAIFVYQI------------TEKTPTGKLIGHHGPISVLEFNDTN--KLLLSASDDGT  270 (425)
T ss_dssp             CCCBSCCEEEETT-EEEEECGGGCEEEEET------------TCSSCSEEECCCSSCEEEEEEETTT--TEEEEEETTSC
T ss_pred             cceeeEEEEcCCC-EEEEEcCCCeEEEEEc------------CCCceeeeeccCCCceEEEEECCCC--CEEEEEcCCCE
Confidence               9999999875 5889999999999999            4556677788999999999999985  89999999999


Q ss_pred             EEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec
Q 035621          205 CKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN  283 (387)
Q Consensus       205 i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  283 (387)
                      |++||+++++.+..+. +...+.+++|+|++ ++++++.|+.|++||+...         ........|...|.+++|+|
T Consensus       271 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~s~  340 (425)
T 1r5m_A          271 LRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---------TLLALSIVDGVPIFAGRISQ  340 (425)
T ss_dssp             EEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---------EEEEEEECTTCCEEEEEECT
T ss_pred             EEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---------cEeEecccCCccEEEEEEcC
Confidence            9999999998888887 77899999999999 9999999999999999873         23333447889999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCcc--------------------EEEEeecccCC-CceeEEEEecC
Q 035621          284 EGKNLVSAAEDGSVYIWEIEKRQ--------------------VVMVLKNELAG-SISEMVIATGI  328 (387)
Q Consensus       284 ~~~~l~s~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~-~v~~~~~~~~~  328 (387)
                      ++++|++++.||.|++||+.+++                    ++..+..|..+ .|+++.|++..
T Consensus       341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  406 (425)
T 1r5m_A          341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG  406 (425)
T ss_dssp             TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS
T ss_pred             CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC
Confidence            99999999999999999999998                    88888887655 89999887644

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.8e-42  Score=305.53  Aligned_cols=278  Identities=14%  Similarity=0.179  Sum_probs=236.1

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc------eeEeccCCCCCceeEEEcCc----cceeeeccccCCCCCeEEEEEc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA------ILAHFSGSRSPRRGLTFAGK----PFIAASHISPTTGSGSVHLYNL   71 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~d~~v~vw~~   71 (387)
                      ++|+|  ++|++|+.||.|++||+.+++      .+..+.+|..+|.+++|+|+    +. ....+++++.|+.|++|++
T Consensus        22 ~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~-~~~~l~s~~~dg~i~iw~~   98 (397)
T 1sq9_A           22 VSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAF-ELCLVATTSFSGDLLFYRI   98 (397)
T ss_dssp             EEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTE-EEEEEEEEETTSCEEEEEE
T ss_pred             EEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCc-cccEEEEEcCCCCEEEEEc
Confidence            56888  799999999999999999888      78888999999999999995    30 0034455889999999999


Q ss_pred             cCCCc-----ccccC-C-----CCCeeeEEec----cCCCE-EEEecCCCcEEEEeCCC------CceeE-----Ec---
Q 035621           72 WSSTP-----LHNIP-V-----PEPVAPLATT----ADGSY-LFTGGLSGNVYAISVPK------GDILR-----SF---  121 (387)
Q Consensus        72 ~~~~~-----~~~~~-~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~i~d~~~------~~~~~-----~~---  121 (387)
                      .+++.     ...+. +     ...|.+++|+    |++++ |++++.||.|++||+++      ++.+.     .+   
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  178 (397)
T 1sq9_A           99 TREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT  178 (397)
T ss_dssp             EECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred             cCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee
Confidence            98886     66555 4     3889999999    99999 99999999999999988      66655     66   


Q ss_pred             ----cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec---c---CCCeEEEEEeeCC
Q 035621          122 ----SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA---H---NDSVTAITCCIGS  191 (387)
Q Consensus       122 ----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~  191 (387)
                          ..|...|.+++|+|++ ++++++.||.|++||+            .....+..+..   |   ...|.+++|+|++
T Consensus       179 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~------------~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~  245 (397)
T 1sq9_A          179 VESPMTPSQFATSVDISERG-LIATGFNNGTVQISEL------------STLRPLYNFESQHSMINNSNSIRSVKFSPQG  245 (397)
T ss_dssp             ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEET------------TTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred             eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEEC------------CCCceeEEEeccccccccCCccceEEECCCC
Confidence                4588999999999999 9999999999999999            45667788888   8   9999999999985


Q ss_pred             CCceEEEEeCC---CcEEEEeCCCCcEEEEEe--------------cCCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621          192 FNSIIISCSMD---CTCKFWRLLNGTHLSTVT--------------FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       192 ~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  254 (387)
                        .+|++++.|   +.|++||+++++.+..+.              +...|.+++|+|++++|++++.||.|++||+...
T Consensus       246 --~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          246 --SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             --TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             --CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence              899999999   999999999999988886              5788999999999999999999999999999874


Q ss_pred             ccccccccceeEeecc------cc---------------cccEEEEEEecCC----------CEEEEEeCCCcEEEEECC
Q 035621          255 SRQQMHKGQELVTLAN------RH---------------DGVVVSVMMMNEG----------KNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       255 ~~~~~~~~~~~~~~~~------~~---------------~~~v~~~~~s~~~----------~~l~s~~~dg~i~iwd~~  303 (387)
                      ...        . .+.      .|               ...|++++|+|++          ++|++++.||.|++|++.
T Consensus       324 ~~~--------~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          324 ERI--------T-TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             EEE--------E-EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             cee--------E-EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence            322        1 122      44               8999999999998          799999999999999998


Q ss_pred             Ccc
Q 035621          304 KRQ  306 (387)
Q Consensus       304 ~~~  306 (387)
                      +|+
T Consensus       395 ~g~  397 (397)
T 1sq9_A          395 GGK  397 (397)
T ss_dssp             C--
T ss_pred             CCC
Confidence            874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-41  Score=290.66  Aligned_cols=283  Identities=13%  Similarity=0.129  Sum_probs=220.1

Q ss_pred             CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--ccccc--C-CCCCeeeEEeccCCCEEEEe
Q 035621           27 SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PLHNI--P-VPEPVAPLATTADGSYLFTG  101 (387)
Q Consensus        27 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~~~~--~-~~~~v~~~~~~~~~~~l~~~  101 (387)
                      +.+.+..+.+|..+|.+++|+|+      .+++++.|+.|++||+..+.  ....+  . |...|.+++|+|++++|++|
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~------~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~   76 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG------ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAG   76 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT------EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEE
T ss_pred             ccccceeeccCCCceeeeccCCC------EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEE
Confidence            45678889999999999999986      44558999999999998753  33333  2 77899999999999999999


Q ss_pred             cCCCcEEEEeCCC-------CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621          102 GLSGNVYAISVPK-------GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK  174 (387)
Q Consensus       102 ~~dg~i~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  174 (387)
                      +.|+.|++||++.       .+++..+.+|...|.+++|+|++++|++++.|++|++||+...        ......+..
T Consensus        77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~--------~~~~~~~~~  148 (330)
T 2hes_X           77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES--------GEEYECISV  148 (330)
T ss_dssp             ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT--------CCCCEEEEE
T ss_pred             eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC--------CCCeEEEEE
Confidence            9999999999853       3566778899999999999999999999999999999998321        012345677


Q ss_pred             eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC--cEEEEEe-cCCceeEEEeCCC--CCeEEEEccCCcEEEE
Q 035621          175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG--THLSTVT-FPCAIMGLALDPT--ETDFFAAGSDGLIYKG  249 (387)
Q Consensus       175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~  249 (387)
                      +.+|...|.+++|+|++  .+|++++.|++|++||..++  +++..+. |...|.+++|+|+  +.+|++++.|+.|++|
T Consensus       149 ~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw  226 (330)
T 2hes_X          149 LQEHSQDVKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW  226 (330)
T ss_dssp             ECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred             eccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence            88999999999999985  89999999999999999876  5666665 7789999999999  6789999999999999


Q ss_pred             eccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc--EEEEe-ecccCCCceeEEEEe
Q 035621          250 LLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ--VVMVL-KNELAGSISEMVIAT  326 (387)
Q Consensus       250 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~-~~~~~~~v~~~~~~~  326 (387)
                      |+................+...|...|.+++|++++ +|++++.||.|++||..+++  .+... ..|....|+++.|++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~  305 (330)
T 2hes_X          227 KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE  305 (330)
T ss_dssp             EEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred             EecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEec
Confidence            997642211100011222223489999999999765 89999999999999998874  33333 344333788777765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.5e-42  Score=297.37  Aligned_cols=275  Identities=17%  Similarity=0.159  Sum_probs=215.4

Q ss_pred             EEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-------C-----CcccccCCCCCee
Q 035621           20 ITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-------S-----TPLHNIPVPEPVA   87 (387)
Q Consensus        20 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-------~-----~~~~~~~~~~~v~   87 (387)
                      .+.|++....+    ..|...|.+++|+|++.++++    ++ |+++++||...       .     .....+.+...|.
T Consensus        16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~----~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   86 (344)
T 4gqb_B           16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLG----AS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVA   86 (344)
T ss_dssp             -------CCSC----SSCCSEEEEEEECTTSCEEEE----EE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEE
T ss_pred             ccccCCCCCCc----ccccCCEEEEEECCCCCEEEE----Ee-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEE
Confidence            45677654332    346777999999998766553    44 66777776321       1     1111223456899


Q ss_pred             eEEeccCCCEEEEecCCCcEEEEeCCCCceeEE----ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621           88 PLATTADGSYLFTGGLSGNVYAISVPKGDILRS----FSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        88 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      +++|+|++ .|++|+.||.|++||+.+++.+..    ..+|...|++++|+|++++|++|+.|+.|++||+         
T Consensus        87 ~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~---------  156 (344)
T 4gqb_B           87 DLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL---------  156 (344)
T ss_dssp             EEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET---------
T ss_pred             EEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC---------
Confidence            99999985 688999999999999998876543    3489999999999999999999999999999999         


Q ss_pred             CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceeEEEeCCCC-CeEEE
Q 035621          164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT---FPCAIMGLALDPTE-TDFFA  239 (387)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~-~~l~~  239 (387)
                         .....+..+.+|...|.+++|++++ ..+|++++.|++|++||++++++...+.   +...+.+++|+|++ +++++
T Consensus       157 ---~~~~~~~~~~~h~~~V~~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~s  232 (344)
T 4gqb_B          157 ---AQQVVLSSYRAHAAQVTCVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVF  232 (344)
T ss_dssp             ---TTTEEEEEECCCSSCEEEEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEE
T ss_pred             ---CCCcEEEEEcCcCCceEEEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEE
Confidence               5677889999999999999999885 4688999999999999999999888775   34578999999964 67888


Q ss_pred             EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCccEEEEeecccCCC
Q 035621          240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG-KNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGS  318 (387)
Q Consensus       240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  318 (387)
                      |+.||.|++||+++..        . ...+.+|...|++++|+|++ ++|++|+.|++|+|||+.+++++. +.+| .+.
T Consensus       233 g~~dg~v~~wd~~~~~--------~-~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H-~~~  301 (344)
T 4gqb_B          233 GDENGTVSLVDTKSTS--------C-VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH-RDF  301 (344)
T ss_dssp             EETTSEEEEEESCC----------C-CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC-SSC
T ss_pred             eccCCcEEEEECCCCc--------E-EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC-CCC
Confidence            9999999999998732        2 22345899999999999998 589999999999999999998764 5565 458


Q ss_pred             ceeEEEEecC
Q 035621          319 ISEMVIATGI  328 (387)
Q Consensus       319 v~~~~~~~~~  328 (387)
                      |++++|++..
T Consensus       302 V~~v~~sp~~  311 (344)
T 4gqb_B          302 VRDATWSPLN  311 (344)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEEEEeCCC
Confidence            9999887543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.3e-41  Score=291.05  Aligned_cols=272  Identities=15%  Similarity=0.242  Sum_probs=233.6

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEec---c--CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHF---S--GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP   76 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~--~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~   76 (387)
                      ++|+|++++|++++ ||.|++||+.+++....+   .  +|...|.+++|+|+...    +++++.|+.|++||+.+++.
T Consensus        57 ~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~d~~i~~~d~~~~~~  131 (337)
T 1gxr_A           57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT----LIVGGEASTLSIWDLAAPTP  131 (337)
T ss_dssp             EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE----EEEEESSSEEEEEECCCC--
T ss_pred             EEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCE----EEEEcCCCcEEEEECCCCCc
Confidence            57999999999999 999999999877543332   2  78999999999996543    44488999999999988863


Q ss_pred             --ccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621           77 --LHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP  153 (387)
Q Consensus        77 --~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  153 (387)
                        ...+. +...+.+++|+|+++++++++.||.|++||+++++.+..+..|...+.+++|+|+++++++++.||.|++||
T Consensus       132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d  211 (337)
T 1gxr_A          132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD  211 (337)
T ss_dssp             EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence              33333 667899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCC
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPT  233 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  233 (387)
                      +            .....+..+ .+...+.+++|+|++  +++++++.|+.|++||+++++......+...+.+++|+|+
T Consensus       212 ~------------~~~~~~~~~-~~~~~v~~~~~s~~~--~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~  276 (337)
T 1gxr_A          212 L------------REGRQLQQH-DFTSQIFSLGYCPTG--EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC  276 (337)
T ss_dssp             T------------TTTEEEEEE-ECSSCEEEEEECTTS--SEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTT
T ss_pred             C------------CCCceEeee-cCCCceEEEEECCCC--CEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCC
Confidence            9            344444444 578899999999885  8999999999999999999887766568899999999999


Q ss_pred             CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      +++|++++.||.|++|++....        ....  ..|...|.+++|+|++++|++++.||.|++|++.
T Consensus       277 ~~~l~~~~~dg~i~~~~~~~~~--------~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          277 GKWFVSTGKDNLLNAWRTPYGA--------SIFQ--SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTCC--------EEEE--EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             CCEEEEecCCCcEEEEECCCCe--------EEEE--ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            9999999999999999998732        2221  2588899999999999999999999999999963

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-42  Score=307.84  Aligned_cols=282  Identities=13%  Similarity=0.157  Sum_probs=237.1

Q ss_pred             ccccCCCc-EEEee----------CCCCcEEEEeCCCCc---eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEE
Q 035621            2 LHHLPCNE-VILTS----------SPEGPITAYNPSSGA---ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVH   67 (387)
Q Consensus         2 l~~s~~~~-~l~~~----------~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~   67 (387)
                      ++|+|+++ +|++|          +.|+.|+|||+.+++   .+..+ .|...|.+++|+|++.+    +++++.||.|+
T Consensus        18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~----l~~~~~dg~v~   92 (416)
T 2pm9_A           18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKI----IAGALDNGSLE   92 (416)
T ss_dssp             CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSC----EEEEESSSCEE
T ss_pred             EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCe----EEEEccCCeEE
Confidence            68999987 99999          899999999998876   34444 58889999999996544    44588999999


Q ss_pred             EEEccC----CCcccccC-CCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCc------eeEE---ccCCCCCeEEEE
Q 035621           68 LYNLWS----STPLHNIP-VPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGD------ILRS---FSAHDKPVSCLK  132 (387)
Q Consensus        68 vw~~~~----~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~~---~~~~~~~v~~~~  132 (387)
                      +||+.+    .+....+. |...|.+++|+|+ +++|++++.||.|++||+.+++      ....   +..|...|.+++
T Consensus        93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  172 (416)
T 2pm9_A           93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA  172 (416)
T ss_dssp             EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred             EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence            999987    33555554 7789999999998 8999999999999999998876      3322   367899999999


Q ss_pred             EcCC-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc------CCCeEEEEEeeCCCCceEEEEeCCC--
Q 035621          133 ISPD-GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH------NDSVTAITCCIGSFNSIIISCSMDC--  203 (387)
Q Consensus       133 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~l~s~~~d~--  203 (387)
                      |+|+ +.++++++.||.|++||+            .....+..+..+      ...+.+++|+|++ ..++++++.|+  
T Consensus       173 ~~~~~~~~l~~~~~dg~v~iwd~------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~d~~~  239 (416)
T 2pm9_A          173 WNQSLAHVFASAGSSNFASIWDL------------KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN-STRVATATGSDND  239 (416)
T ss_dssp             ECSSCTTEEEEESSSSCEEEEET------------TTTEEEEEECCCCCSSCCCCCEEEEEECSSC-TTEEEEEECCSSS
T ss_pred             eCCCCCcEEEEEcCCCCEEEEEC------------CCCCcceEEeccccccccCCceEEEEECCCC-CCEEEEEECCCCC
Confidence            9998 789999999999999999            455566666665      7899999999984 46899999998  


Q ss_pred             -cEEEEeCCCC-cEEEEEe--cCCceeEEEeCC-CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEE
Q 035621          204 -TCKFWRLLNG-THLSTVT--FPCAIMGLALDP-TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS  278 (387)
Q Consensus       204 -~i~iwd~~~~-~~~~~~~--~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  278 (387)
                       .|++||++++ .++..+.  +...|.+++|+| ++++|++++.||.|++||+.+.         .....+..|...|.+
T Consensus       240 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---------~~~~~~~~~~~~v~~  310 (416)
T 2pm9_A          240 PSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---------EQLSQFPARGNWCFK  310 (416)
T ss_dssp             CCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---------CEEEEEECSSSCCCC
T ss_pred             ceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---------ccceeecCCCCceEE
Confidence             9999999986 5666665  778999999999 8999999999999999999873         223334578999999


Q ss_pred             EEEecCC-CEEEEEeCCCcEEEEECCCccEEEE
Q 035621          279 VMMMNEG-KNLVSAAEDGSVYIWEIEKRQVVMV  310 (387)
Q Consensus       279 ~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~  310 (387)
                      ++|+|++ .+|++++.||.|++||+.+++....
T Consensus       311 ~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~  343 (416)
T 2pm9_A          311 TKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD  343 (416)
T ss_dssp             EEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred             EEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence            9999999 8999999999999999998775443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.2e-42  Score=302.93  Aligned_cols=290  Identities=19%  Similarity=0.266  Sum_probs=237.2

Q ss_pred             CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCC
Q 035621           18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGS   96 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~   96 (387)
                      ..+..|+..+.....++.+|.++|++++|+|++.    .+++++.|++|++||+.+++....+. |...|.+++|+|+++
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~----~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~  121 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKN----WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ  121 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSS----CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSS
T ss_pred             ccccccccceeEEeecccccccEEEEEEEcCCCC----EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCC
Confidence            4456788888888999999999999999999654    45559999999999999988877776 667899999999999


Q ss_pred             EEEEecCCCcEEEEeCCCCc-------eeEEccCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCC
Q 035621           97 YLFTGGLSGNVYAISVPKGD-------ILRSFSAHDKPVSCLKISPD-GSLLISGGDDGVIATVPIFQLVDEHTDDKNPD  168 (387)
Q Consensus        97 ~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  168 (387)
                      +|++|+.|+.+++||+.+..       ....+.+|.+.|.++.|.|+ +..|++|+.|++|++||+            ..
T Consensus       122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~------------~~  189 (380)
T 3iz6_a          122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDV------------TT  189 (380)
T ss_dssp             EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECT------------TT
T ss_pred             EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEc------------CC
Confidence            99999999999999986532       34567799999999999996 457999999999999999            34


Q ss_pred             ccceEee-----eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-CCcEEEEEe-cCCceeEEEeCCCCCeEEEEc
Q 035621          169 DLMLQKF-----VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL-NGTHLSTVT-FPCAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       169 ~~~~~~~-----~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  241 (387)
                      ...+..+     .+|...|.++++.+.. +++|++|+.|++|++||++ .++.+..+. |...|.+++|+|++++|++++
T Consensus       190 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s  268 (380)
T 3iz6_a          190 GQRISIFGSEFPSGHTADVLSLSINSLN-ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS  268 (380)
T ss_dssp             CCEEEEECCCSSSSCCSCEEEEEECSSS-CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC
T ss_pred             CcEEEEeecccCCCCccCeEEEEeecCC-CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc
Confidence            4445444     5789999999997742 5899999999999999998 456666666 788999999999999999999


Q ss_pred             cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee---cccCCC
Q 035621          242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK---NELAGS  318 (387)
Q Consensus       242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~  318 (387)
                      .||.|++||++++...........  ....+...|++++|+|+|++|++|+.||.|++||+.+++.+..+.   ..+.+.
T Consensus       269 ~D~~i~lwd~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~  346 (380)
T 3iz6_a          269 DDGTCRLFDMRTGHQLQVYNREPD--RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR  346 (380)
T ss_dssp             SSSCEEEEETTTTEEEEEECCCCS--SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCC
T ss_pred             CCCeEEEEECCCCcEEEEeccccc--ccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCc
Confidence            999999999987543221111000  001233458999999999999999999999999999999888773   234568


Q ss_pred             ceeEEEEe
Q 035621          319 ISEMVIAT  326 (387)
Q Consensus       319 v~~~~~~~  326 (387)
                      |+++.|++
T Consensus       347 v~~l~~s~  354 (380)
T 3iz6_a          347 ISCLGLSS  354 (380)
T ss_dssp             CCEEEECS
T ss_pred             eEEEEECC
Confidence            99988875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1e-40  Score=286.22  Aligned_cols=271  Identities=20%  Similarity=0.257  Sum_probs=226.6

Q ss_pred             ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC-----cccccC-CCCCeeeEEeccCCCEEEEec
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST-----PLHNIP-VPEPVAPLATTADGSYLFTGG  102 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~-----~~~~~~-~~~~v~~~~~~~~~~~l~~~~  102 (387)
                      .+..++.+|.++|.+++|+|+.   ...+++++.|++|++|++....     ++..+. |...|.+++|+|++++|++|+
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~---~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQ---PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSC---TTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEEccccceEEEEEccCCC---ccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence            4566789999999999999842   1234458999999999986532     233443 778999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621          103 LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV  182 (387)
Q Consensus       103 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  182 (387)
                      .|++|++||+++++.+..+.+|...|.+++|+|+++++++++.|+.|++||+             ....+..+.+|...|
T Consensus        85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~-------------~~~~~~~~~~h~~~v  151 (319)
T 3frx_A           85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-------------KGQCLATLLGHNDWV  151 (319)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET-------------TSCEEEEECCCSSCE
T ss_pred             CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC-------------CCCeEEEEeccCCcE
Confidence            9999999999999999999999999999999999999999999999999998             344677888999999


Q ss_pred             EEEEEeeCC----CCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621          183 TAITCCIGS----FNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ  257 (387)
Q Consensus       183 ~~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  257 (387)
                      .++.+.|..    ++..+++++.|+.|++||+++.+....+. |...|.+++|+|++++|++++.||.|++||+....  
T Consensus       152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~--  229 (319)
T 3frx_A          152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK--  229 (319)
T ss_dssp             EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE--
T ss_pred             EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--
Confidence            999998863    23589999999999999999998888776 78899999999999999999999999999998732  


Q ss_pred             cccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc-------CCCceeEEEEe
Q 035621          258 QMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL-------AGSISEMVIAT  326 (387)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~v~~~~~~~  326 (387)
                            .+..+  .+...|.+++|+|++.+|++++.+ .+++|++..+..+..+..+.       ...+.+++|++
T Consensus       230 ------~~~~~--~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  296 (319)
T 3frx_A          230 ------AMYTL--SAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA  296 (319)
T ss_dssp             ------EEEEE--ECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT
T ss_pred             ------EEEEe--cCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC
Confidence                  22222  245689999999999999988765 59999999988888776432       23455666554

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6e-41  Score=298.96  Aligned_cols=288  Identities=20%  Similarity=0.307  Sum_probs=238.6

Q ss_pred             CccccCCCcEEEeeCCCCcEEEEeCCCCceeEec--cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            1 LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHF--SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      +|+||++ ++||+|. |++|+|||..+++....+  .+|...|++++|+|++.+    +++|+.||.|++||+++++.+.
T Consensus       110 ~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~----lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          110 LVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY----LAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             CEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSE----EEEEETTSCEEEEETTTTEEEE
T ss_pred             eEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCE----EEEEECCCeEEEEEcCCCcEEE
Confidence            4789976 5788875 899999999999887765  467788999999996554    4459999999999999998888


Q ss_pred             ccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621           79 NIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        79 ~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      .+. |...+.++++  ++.+|++|+.|+.+++||.... ..+..+.+|...+..+.++|+++++++++.|+.+++|+...
T Consensus       184 ~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          184 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            776 5667877766  5679999999999999998764 45677889999999999999999999999999999999843


Q ss_pred             ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEE--EeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621          157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS--CSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE  234 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  234 (387)
                      ..        .....+.....|...|.+++|+|.. ..++++  |+.|++|++||+.++++...+.....+.++.|+|++
T Consensus       262 ~~--------~~~~~~~~~~~~~~~V~~~~~~p~~-~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~  332 (420)
T 4gga_A          262 GE--------GGWVPLQTFTQHQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHY  332 (420)
T ss_dssp             CS--------SCSCCSEEECCCSSCEEEEEECTTC-TTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTT
T ss_pred             cc--------ccceeeeeecccCCceeeeeeCCCc-ccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCC
Confidence            21        1223456778899999999999986 456655  457999999999999999999999999999999999


Q ss_pred             CeEEEEc--cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          235 TDFFAAG--SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       235 ~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      +.+++++  .|+.|++||+.+.        .. ...+.+|.+.|++++|+|+|++|+||+.|++|+|||+.+..+....+
T Consensus       333 ~~lv~~sg~~d~~I~iwd~~~~--------~~-v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~  403 (420)
T 4gga_A          333 KELISGHGFAQNQLVIWKYPTM--------AK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRE  403 (420)
T ss_dssp             TEEEEEECTTTCCEEEEETTTC--------CE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred             CeEEEEEecCCCEEEEEECCCC--------cE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence            9998865  6899999999873        22 33446899999999999999999999999999999998877666555


Q ss_pred             cc
Q 035621          313 NE  314 (387)
Q Consensus       313 ~~  314 (387)
                      .+
T Consensus       404 ~~  405 (420)
T 4gga_A          404 RE  405 (420)
T ss_dssp             --
T ss_pred             hc
Confidence            44

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=288.54  Aligned_cols=286  Identities=13%  Similarity=0.171  Sum_probs=228.1

Q ss_pred             CceeEeccCCCC-CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc----ccCCCCCeeeEEeccCCCEEEEec
Q 035621           28 GAILAHFSGSRS-PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH----NIPVPEPVAPLATTADGSYLFTGG  102 (387)
Q Consensus        28 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~  102 (387)
                      .+.+.++++|.. .|.+++|+|++.+    +++++.|+.|++||+.++....    ...|...|.+++|+|++++|++|+
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~----las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s   80 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTL----LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS   80 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSC----EEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCE----EEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE
Confidence            456778889988 8999999996544    4559999999999998875332    124778999999999999999999


Q ss_pred             CCCcEEEEeCCCC--ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC
Q 035621          103 LSGNVYAISVPKG--DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND  180 (387)
Q Consensus       103 ~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (387)
                      .|+.+++||+..+  +++..+.+|...|.+++|+|++++|++++.|+.|++||+...         .....+..+..|..
T Consensus        81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~---------~~~~~~~~~~~h~~  151 (345)
T 3fm0_A           81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE---------DEYECVSVLNSHTQ  151 (345)
T ss_dssp             TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT---------SCEEEEEEECCCCS
T ss_pred             CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC---------CCeEEEEEecCcCC
Confidence            9999999999876  456788899999999999999999999999999999998431         12235667789999


Q ss_pred             CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE--EEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621          181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH--LSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ  257 (387)
Q Consensus       181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  257 (387)
                      .|.+++|+|++  .+|++++.|++|++||+++++.  ...+. |...|.+++|+|++++|++++.|+.|++|+.......
T Consensus       152 ~v~~~~~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~  229 (345)
T 3fm0_A          152 DVKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE  229 (345)
T ss_dssp             CEEEEEECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred             CeEEEEECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence            99999999985  8999999999999999988753  34454 6789999999999999999999999999997543221


Q ss_pred             ccc-------ccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc--------EEEEeecccCCCceeE
Q 035621          258 QMH-------KGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ--------VVMVLKNELAGSISEM  322 (387)
Q Consensus       258 ~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~~  322 (387)
                      ...       ....+......|...|.+++|+|++..|++++.|+.|++|+...+.        ........+...|+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  309 (345)
T 3fm0_A          230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV  309 (345)
T ss_dssp             TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred             ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence            110       0111222333488999999999999999999999999999987653        1112222235688888


Q ss_pred             EEEecC
Q 035621          323 VIATGI  328 (387)
Q Consensus       323 ~~~~~~  328 (387)
                      +|++..
T Consensus       310 ~~~p~~  315 (345)
T 3fm0_A          310 AWNPKE  315 (345)
T ss_dssp             EECSSS
T ss_pred             EEeCCC
Confidence            887643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=7.6e-41  Score=302.43  Aligned_cols=289  Identities=18%  Similarity=0.219  Sum_probs=252.6

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-   81 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-   81 (387)
                      ++.+++++|++|+.||.|++||+.+++.+..+.+|.++|.+++|+++.     .+++++.||+|++||+.+++.+..+. 
T Consensus       127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-----~l~s~s~dg~i~vwd~~~~~~~~~~~~  201 (464)
T 3v7d_B          127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-----ILVSGSTDRTVRVWDIKKGCCTHVFEG  201 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-----EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-----EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence            456678899999999999999999999999999999999999999865     34458999999999999998888877 


Q ss_pred             CCCCeeeEEec--cCCCEEEEecCCCcEEEEeCCCCce-----------------------eEEccCCCCCeEEEEEcCC
Q 035621           82 VPEPVAPLATT--ADGSYLFTGGLSGNVYAISVPKGDI-----------------------LRSFSAHDKPVSCLKISPD  136 (387)
Q Consensus        82 ~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~  136 (387)
                      |...|.+++|+  ++++++++|+.||.|++||+++++.                       +..+.+|...+.++  +++
T Consensus       202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~  279 (464)
T 3v7d_B          202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH  279 (464)
T ss_dssp             CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE
T ss_pred             CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC
Confidence            77899999998  5778999999999999999987652                       45667888888887  567


Q ss_pred             CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE
Q 035621          137 GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL  216 (387)
Q Consensus       137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  216 (387)
                      ++++++++.||.|++||+            .....+..+.+|...|.+++|+|++  +++++++.||.|++||+++++++
T Consensus       280 ~~~l~~~~~d~~i~vwd~------------~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~sg~~dg~i~vwd~~~~~~~  345 (464)
T 3v7d_B          280 GNIVVSGSYDNTLIVWDV------------AQMKCLYILSGHTDRIYSTIYDHER--KRCISASMDTTIRIWDLENGELM  345 (464)
T ss_dssp             TTEEEEEETTSCEEEEET------------TTTEEEEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCEEEEEeCCCeEEEEEC------------CCCcEEEEecCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcEE
Confidence            899999999999999999            5667788889999999999999975  89999999999999999999999


Q ss_pred             EEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621          217 STVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG  295 (387)
Q Consensus       217 ~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  295 (387)
                      ..+. |...|.+++|+  ++++++++.||.|++||+....        .....  .|...+..++|+|++++|++|+ ||
T Consensus       346 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~l~~~~-dg  412 (464)
T 3v7d_B          346 YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS--------RKFSY--HHTNLSAITTFYVSDNILVSGS-EN  412 (464)
T ss_dssp             EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC--------EEEEE--ECTTCCCEEEEEECSSEEEEEE-TT
T ss_pred             EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc--------eeeee--cCCCCccEEEEEeCCCEEEEec-CC
Confidence            9987 77889999997  5899999999999999998732        22222  4667788899999999999998 89


Q ss_pred             cEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621          296 SVYIWEIEKRQVVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       296 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  325 (387)
                      .|++||+.+++++..+...+.+.|.++.|.
T Consensus       413 ~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~  442 (464)
T 3v7d_B          413 QFNIYNLRSGKLVHANILKDADQIWSVNFK  442 (464)
T ss_dssp             EEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred             eEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence            999999999999987555557789999885

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=9.1e-41  Score=286.03  Aligned_cols=272  Identities=19%  Similarity=0.290  Sum_probs=234.3

Q ss_pred             CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCc
Q 035621           28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGN  106 (387)
Q Consensus        28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~  106 (387)
                      .....++.+|..+|++++|+|++.+    +++++.||.|++|++.+++....+. |...|.+++|+|++++|++++.|+.
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~----l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~   88 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT   88 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSE----EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCE----EEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCE
Confidence            4556778999999999999996544    4458999999999999988877766 6788999999999999999999999


Q ss_pred             EEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEE
Q 035621          107 VYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAIT  186 (387)
Q Consensus       107 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  186 (387)
                      |++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+            .....+..+..|..+|.+++
T Consensus        89 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~------------~~~~~~~~~~~~~~~v~~~~  156 (312)
T 4ery_A           89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV------------KTGKCLKTLPAHSDPVSAVH  156 (312)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEET------------TTCCEEEEECCCSSCEEEEE
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC------------CCCEEEEEecCCCCcEEEEE
Confidence            999999999999999999999999999999999999999999999999            55667788889999999999


Q ss_pred             EeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccce
Q 035621          187 CCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQE  264 (387)
Q Consensus       187 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  264 (387)
                      |+|++  .+|++++.|+.|++||+++++.+..+.  +...+..++|+|+++++++++.|+.|++||+....        .
T Consensus       157 ~~~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~  226 (312)
T 4ery_A          157 FNRDG--SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK--------C  226 (312)
T ss_dssp             ECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE--------E
T ss_pred             EcCCC--CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc--------E
Confidence            99875  899999999999999999999888775  45679999999999999999999999999998732        2


Q ss_pred             eEeecccccccEE--EEEE-ecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          265 LVTLANRHDGVVV--SVMM-MNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       265 ~~~~~~~~~~~v~--~~~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                       ...+.+|...+.  ...+ .+++.+|++|+.||.|++||+.+++++..+.+|. ..|.++++.+.
T Consensus       227 -~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~p~  290 (312)
T 4ery_A          227 -LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT-DVVISTACHPT  290 (312)
T ss_dssp             -EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS-SCEEEEEECSS
T ss_pred             -EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC-CcEEEEeecCc
Confidence             222234544322  2234 4678899999999999999999999999999875 47888877653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.3e-42  Score=309.46  Aligned_cols=282  Identities=16%  Similarity=0.156  Sum_probs=221.3

Q ss_pred             ccccC-CCcEEEeeCCCCcEEEEeCCCCce--eEeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621            2 LHHLP-CNEVILTSSPEGPITAYNPSSGAI--LAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSSTPL   77 (387)
Q Consensus         2 l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~~~~   77 (387)
                      |+|+| ++++||+|+.||.|+|||+.+++.  ...+.+|.++|++++|+| ++.    .+++++.||+|++||++++...
T Consensus       125 l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~----~l~s~s~D~~v~iwd~~~~~~~  200 (435)
T 4e54_B          125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN----QFYASSMEGTTRLQDFKGNILR  200 (435)
T ss_dssp             EEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT----EEEEECSSSCEEEEETTSCEEE
T ss_pred             EEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC----EEEEEeCCCEEEEeeccCCcee
Confidence            68999 567999999999999999987754  445678999999999998 333    4455899999999999766443


Q ss_pred             cccC---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 035621           78 HNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGGDDGVIATVP  153 (387)
Q Consensus        78 ~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd  153 (387)
                      ....   +...+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|...|++++|+|++. ++++++.|+.|++||
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd  279 (435)
T 4e54_B          201 VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD  279 (435)
T ss_dssp             EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEE
T ss_pred             EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEe
Confidence            3222   23467899999999999999999999999985 456778889999999999999876 788999999999999


Q ss_pred             CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cC------Ccee
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FP------CAIM  226 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~------~~v~  226 (387)
                      ++...         .........+|...|.+++|+|++  .+|++++.|++|++||+.++.....+. +.      ..+.
T Consensus       280 ~~~~~---------~~~~~~~~~~h~~~v~~~~~spdg--~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  348 (435)
T 4e54_B          280 LRQVR---------GKASFLYSLPHRHPVNAACFSPDG--ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPI  348 (435)
T ss_dssp             TTTCC---------SSSCCSBCCBCSSCEEECCBCTTS--SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCC
T ss_pred             ccccc---------ccceEEEeeeccccccceeECCCC--CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeE
Confidence            95421         112233446799999999999875  899999999999999999988776664 21      1344


Q ss_pred             EEEeCCCCCeEEEEcc------------CCcEEEEeccccccccccccceeEeecccccccEEEE-EEecCCCEEEEEeC
Q 035621          227 GLALDPTETDFFAAGS------------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV-MMMNEGKNLVSAAE  293 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~  293 (387)
                      ...|+|++..++++..            ++.|++||..+        +..+..+..+|...|.++ +|+|+|++|++|+ 
T Consensus       349 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~--------g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-  419 (435)
T 4e54_B          349 KAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS--------GKMMCQLYDPESSGISSLNEFNPMGDTLASAM-  419 (435)
T ss_dssp             BCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS--------CCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-
T ss_pred             EEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC--------CcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-
Confidence            5677777777777642            35799999887        344455556788889887 6999999999876 


Q ss_pred             CCcEEEEECCCccEE
Q 035621          294 DGSVYIWEIEKRQVV  308 (387)
Q Consensus       294 dg~i~iwd~~~~~~~  308 (387)
                      |+.|+||++++++..
T Consensus       420 d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          420 GYHILIWSQQEARTR  434 (435)
T ss_dssp             SSEEEECCCC-----
T ss_pred             CCcEEEEECCcCeee
Confidence            889999999998764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.1e-41  Score=319.42  Aligned_cols=284  Identities=16%  Similarity=0.202  Sum_probs=232.9

Q ss_pred             ccccCCC-cEEEeeCCCCcEEEEeCCCC-----ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC
Q 035621            2 LHHLPCN-EVILTSSPEGPITAYNPSSG-----AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST   75 (387)
Q Consensus         2 l~~s~~~-~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~   75 (387)
                      ++|+|++ ++|++|+.|++|++||+.+.     .....+.+|...|.+++|+|++.+    +++++.|+.|++||+.+++
T Consensus       388 v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~----l~sgs~Dg~v~vwd~~~~~  463 (694)
T 3dm0_A          388 IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF----ALSGSWDGELRLWDLAAGV  463 (694)
T ss_dssp             EECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSE----EEEEETTSEEEEEETTTTE
T ss_pred             EEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCE----EEEEeCCCcEEEEECCCCc
Confidence            5688865 79999999999999998753     345678999999999999996554    4459999999999999998


Q ss_pred             cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc---cCCCCCeEEEEEcCCC--CEEEEEeCCCcE
Q 035621           76 PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF---SAHDKPVSCLKISPDG--SLLISGGDDGVI  149 (387)
Q Consensus        76 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~--~~l~~~~~dg~i  149 (387)
                      ....+. |...|.+++|+|++++|++|+.|++|++||..........   .+|...|.+++|+|++  ..+++++.|+.|
T Consensus       464 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v  543 (694)
T 3dm0_A          464 STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV  543 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCE
T ss_pred             ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeE
Confidence            777665 7789999999999999999999999999998655433322   4688999999999986  589999999999


Q ss_pred             EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEE
Q 035621          150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLA  229 (387)
Q Consensus       150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~  229 (387)
                      ++||+            ........+.+|...|.+++|+|++  ++|++++.|++|++||+++++.+..+..+..+.+++
T Consensus       544 ~vwd~------------~~~~~~~~~~~h~~~v~~v~~spdg--~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~  609 (694)
T 3dm0_A          544 KVWNL------------SNCKLRSTLAGHTGYVSTVAVSPDG--SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC  609 (694)
T ss_dssp             EEEET------------TTCCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEE
T ss_pred             EEEEC------------CCCcEEEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEE
Confidence            99999            4566778889999999999999985  899999999999999999999998888888999999


Q ss_pred             eCCCCCeEEEEccCCcEEEEeccccccccccccceeE----------eecccccccEEEEEEecCCCEEEEEeCCCcEEE
Q 035621          230 LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELV----------TLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYI  299 (387)
Q Consensus       230 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  299 (387)
                      |+|++.++++++ ++.|++||+...............          .....+...+++++|+|+|++|++|+.||.|++
T Consensus       610 ~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~i  688 (694)
T 3dm0_A          610 FSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV  688 (694)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEE
Confidence            999988777665 566999999875433221110000          000112234789999999999999999999999


Q ss_pred             EECCC
Q 035621          300 WEIEK  304 (387)
Q Consensus       300 wd~~~  304 (387)
                      |++..
T Consensus       689 W~i~~  693 (694)
T 3dm0_A          689 WGIGR  693 (694)
T ss_dssp             EEC--
T ss_pred             EeccC
Confidence            99853

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-42  Score=306.90  Aligned_cols=287  Identities=15%  Similarity=0.160  Sum_probs=241.2

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCC----CceeEeccCCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCC-
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSS----GAILAHFSGSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSST-   75 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~-   75 (387)
                      ++|+|++++|++|+.||.|++||+.+    .+.+..+.+|..+|.+++|+|+ ..    .+++++.|+.|++||+.+++ 
T Consensus        73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----~l~s~~~dg~v~iwd~~~~~~  148 (416)
T 2pm9_A           73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN----VLASGGNNGEIFIWDMNKCTE  148 (416)
T ss_dssp             EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT----BEEEECSSSCEEBCBTTTTSS
T ss_pred             EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC----EEEEEcCCCeEEEEECCCCcc
Confidence            57999999999999999999999987    4578889999999999999995 43    34458999999999998876 


Q ss_pred             -----ccccc----CCCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCceeEEccCC------CCCeEEEEEcCCC-C
Q 035621           76 -----PLHNI----PVPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGDILRSFSAH------DKPVSCLKISPDG-S  138 (387)
Q Consensus        76 -----~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~-~  138 (387)
                           ....+    .+...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..|      ...|.+++|+|++ .
T Consensus       149 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (416)
T 2pm9_A          149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST  228 (416)
T ss_dssp             CTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred             ccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence                 33332    36788999999998 789999999999999999999998888766      7899999999987 6


Q ss_pred             EEEEEeCCC---cEEEEeCCcccccCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc
Q 035621          139 LLISGGDDG---VIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT  214 (387)
Q Consensus       139 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  214 (387)
                      ++++++.|+   .|++||++.           ...+...+. +|...|.+++|+|.. +.+|++++.|+.|++||+++++
T Consensus       229 ~l~~~~~d~~~~~i~~~d~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~~-~~~l~s~~~dg~v~~wd~~~~~  296 (416)
T 2pm9_A          229 RVATATGSDNDPSILIWDLRN-----------ANTPLQTLNQGHQKGILSLDWCHQD-EHLLLSSGRDNTVLLWNPESAE  296 (416)
T ss_dssp             EEEEEECCSSSCCCCEEETTS-----------TTSCSBCCCSCCSSCEEEEEECSSC-SSCEEEEESSSEEEEECSSSCC
T ss_pred             EEEEEECCCCCceEEEEeCCC-----------CCCCcEEeecCccCceeEEEeCCCC-CCeEEEEeCCCCEEEeeCCCCc
Confidence            899999998   999999942           124556666 899999999999832 4899999999999999999999


Q ss_pred             EEEEEe-cCCceeEEEeCCCC-CeEEEEccCCcEEEEecccccccccccc---------------------------cee
Q 035621          215 HLSTVT-FPCAIMGLALDPTE-TDFFAAGSDGLIYKGLLKYQSRQQMHKG---------------------------QEL  265 (387)
Q Consensus       215 ~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------------------~~~  265 (387)
                      ++..+. +...|.+++|+|++ .++++++.|+.|++|++...........                           ...
T Consensus       297 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (416)
T 2pm9_A          297 QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL  376 (416)
T ss_dssp             EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC
T ss_pred             cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc
Confidence            998887 67889999999999 8999999999999999987543221100                           000


Q ss_pred             EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621          266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  305 (387)
                       .....|..++.+++|+|+|++|++++.||.|+||++.+.
T Consensus       377 -~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          377 -QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             -CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             -cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence             111226778889999999999999999999999999865

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-42  Score=306.04  Aligned_cols=293  Identities=11%  Similarity=0.102  Sum_probs=222.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCC--ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC---c
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSG--AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST---P   76 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~---~   76 (387)
                      ++|+|++++|++|+.||.|+|||+.++  +.+..+.+|..+|.+++|+|++.    .+++++.|+.|++||+.+++   .
T Consensus        17 ~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~----~l~s~s~d~~v~vwd~~~~~~~~~   92 (377)
T 3dwl_C           17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSN----RIVTCSQDRNAYVYEKRPDGTWKQ   92 (377)
T ss_dssp             CEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTC----CEEEEETTSSEEEC------CCCC
T ss_pred             EEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCC----EEEEEeCCCeEEEEEcCCCCceee
Confidence            689999999999999999999999988  78888999999999999999654    44558999999999998877   3


Q ss_pred             cc-ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc---eeEEccC-CCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 035621           77 LH-NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD---ILRSFSA-HDKPVSCLKISPDGSLLISGGDDGVIAT  151 (387)
Q Consensus        77 ~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i  151 (387)
                      .. ...|...|.+++|+|++++|++++.|+.|++||+++++   ....+.. |...|.+++|+|++++|++++.|+.|++
T Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~i  172 (377)
T 3dwl_C           93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV  172 (377)
T ss_dssp             EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEE
T ss_pred             eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEE
Confidence            33 33477899999999999999999999999999998887   4677777 9999999999999999999999999999


Q ss_pred             EeCCcccccCCC------CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE----EEEEe-
Q 035621          152 VPIFQLVDEHTD------DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH----LSTVT-  220 (387)
Q Consensus       152 wd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~-  220 (387)
                      ||+.........      ...+....+..+ .|...|.+++|+|++  ++|++++.|+.|++||+.+++.    +..+. 
T Consensus       173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  249 (377)
T 3dwl_C          173 LSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG--NALAYAGHDSSVTIAYPSAPEQPPRALITVKL  249 (377)
T ss_dssp             EEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS--SCEEEEETTTEEC-CEECSTTSCEEECCCEEC
T ss_pred             EEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC--CEEEEEeCCCcEEEEECCCCCCcceeeEeecC
Confidence            998432111000      000124455556 899999999999985  8999999999999999999887    55555 


Q ss_pred             cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccc-------------------------------c------
Q 035621          221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG-------------------------------Q------  263 (387)
Q Consensus       221 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------------------~------  263 (387)
                      +...|.+++|+|++++|++++.++.+ +|+............                               .      
T Consensus       250 ~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (377)
T 3dwl_C          250 SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMD  328 (377)
T ss_dssp             SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------------
T ss_pred             CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchh
Confidence            67789999999999999888766655 676652210000000                               0      


Q ss_pred             ------eeEeecccccccEEEEEEecCC-C---EEEEEeCCCcEEEEEC
Q 035621          264 ------ELVTLANRHDGVVVSVMMMNEG-K---NLVSAAEDGSVYIWEI  302 (387)
Q Consensus       264 ------~~~~~~~~~~~~v~~~~~s~~~-~---~l~s~~~dg~i~iwd~  302 (387)
                            ........|...|+++++.+.. .   .|+||+.||.|++||+
T Consensus       329 ~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          329 LKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             --------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             hccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                  0011122499999999976543 3   6999999999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.2e-42  Score=299.77  Aligned_cols=294  Identities=12%  Similarity=0.134  Sum_probs=234.5

Q ss_pred             ccccCC----CcEEEeeCCCCcEEEEeCCCCceeEeccC-----CCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc
Q 035621            2 LHHLPC----NEVILTSSPEGPITAYNPSSGAILAHFSG-----SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW   72 (387)
Q Consensus         2 l~~s~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~   72 (387)
                      ++|+|+    ...+++++.++.|++||+.+++.+..+..     |...|.+++|+|+..-....+++++.||.|++||+.
T Consensus        24 i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~  103 (366)
T 3k26_A           24 VQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI  103 (366)
T ss_dssp             EEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT
T ss_pred             EEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch
Confidence            578884    44566666677999999998887776654     557799999999632223455668999999999999


Q ss_pred             CCCcccccC-CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEc---cCCCCCeEEEEEcCCCCEEEEEeCCC
Q 035621           73 SSTPLHNIP-VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSF---SAHDKPVSCLKISPDGSLLISGGDDG  147 (387)
Q Consensus        73 ~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg  147 (387)
                      +++.+..+. |...|.+++|+| ++++|++++.||.|++||+++++.+..+   ..|...|.+++|+|++++|++++.||
T Consensus       104 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  183 (366)
T 3k26_A          104 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH  183 (366)
T ss_dssp             TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCC
Confidence            999888777 788999999999 9999999999999999999999988887   68999999999999999999999999


Q ss_pred             cEEEEeCCcccccCC----------------CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC
Q 035621          148 VIATVPIFQLVDEHT----------------DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL  211 (387)
Q Consensus       148 ~i~iwd~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  211 (387)
                      .|++||++.......                ...............|...|.+++|+    ++++++++.|+.|++||++
T Consensus       184 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~d~~i~~wd~~  259 (366)
T 3k26_A          184 SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL----GDLILSKSCENAIVCWKPG  259 (366)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE----TTEEEEECSSSEEEEEEES
T ss_pred             CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc----CCEEEEEecCCEEEEEeCC
Confidence            999999964311100                00000011223344599999999998    3799999999999999998


Q ss_pred             CCcE--------------EEEEe-cCCceeEEEeCCC--CCeEEEEccCCcEEEEeccccccccccccceeEeecccc--
Q 035621          212 NGTH--------------LSTVT-FPCAIMGLALDPT--ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH--  272 (387)
Q Consensus       212 ~~~~--------------~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--  272 (387)
                      ++..              +..+. +...|.+++|+|+  +++|++++.||.|++||+.......     .....+..|  
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~  334 (366)
T 3k26_A          260 KMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK-----AKCTTLTHHKC  334 (366)
T ss_dssp             STTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG-----CEEEEECCTTC
T ss_pred             CccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc-----ccceEEccccc
Confidence            7644              55555 6678999999999  9999999999999999998754321     122223355  


Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          273 DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       273 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      ...|++++|+|++++|++++.||.|++||+.+
T Consensus       335 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          335 GAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            78999999999999999999999999999863

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=9.4e-40  Score=288.48  Aligned_cols=289  Identities=15%  Similarity=0.232  Sum_probs=231.9

Q ss_pred             cEEEEeCCCCcee----EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-----------
Q 035621           19 PITAYNPSSGAIL----AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-----------   83 (387)
Q Consensus        19 ~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-----------   83 (387)
                      ...+|+.......    ....+|...|.+++|+|++.+++.    ++ ++.+++|++.+++.+..+...           
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~----g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~  115 (393)
T 1erj_A           41 YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT----GC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLN  115 (393)
T ss_dssp             CEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEE----EC-BSCEEEEETTTCCEEEEECC------------
T ss_pred             eEEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEE----Ec-CCcEEEEEecCCCEEEEecCcccccccccccc
Confidence            3457776543321    122359999999999997765553    44 789999999998876655422           


Q ss_pred             --------CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621           84 --------EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF  155 (387)
Q Consensus        84 --------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  155 (387)
                              ..|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+ 
T Consensus       116 ~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~-  194 (393)
T 1erj_A          116 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL-  194 (393)
T ss_dssp             -----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-
T ss_pred             ccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEEC-
Confidence                    13899999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--------cCCceeE
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--------FPCAIMG  227 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~~  227 (387)
                                 ........+. +...+.+++++|.. +.+|++++.|+.|++||+++++.+..+.        |...|.+
T Consensus       195 -----------~~~~~~~~~~-~~~~v~~~~~~~~~-~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  261 (393)
T 1erj_A          195 -----------RTGQCSLTLS-IEDGVTTVAVSPGD-GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS  261 (393)
T ss_dssp             -----------TTTEEEEEEE-CSSCEEEEEECSTT-CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred             -----------CCCeeEEEEE-cCCCcEEEEEECCC-CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence                       3444444443 56789999999832 5899999999999999999998887762        5678999


Q ss_pred             EEeCCCCCeEEEEccCCcEEEEecccccccccc---ccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMH---KGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      ++|+|++++|++++.|+.|++||+.........   ........+.+|...|.+++|+|++++|++|+.||.|++||+.+
T Consensus       262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~  341 (393)
T 1erj_A          262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS  341 (393)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            999999999999999999999999864322111   01122233457999999999999999999999999999999999


Q ss_pred             ccEEEEeecccCCCceeEEEEec
Q 035621          305 RQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       305 ~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      ++++..+.+|. +.|.+++++++
T Consensus       342 ~~~~~~l~~h~-~~v~~v~~~~~  363 (393)
T 1erj_A          342 GNPLLMLQGHR-NSVISVAVANG  363 (393)
T ss_dssp             CCEEEEEECCS-SCEEEEEECSS
T ss_pred             CeEEEEECCCC-CCEEEEEecCC
Confidence            99999998875 48888877653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-40  Score=296.95  Aligned_cols=281  Identities=18%  Similarity=0.215  Sum_probs=243.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|+|++++|++|+.||.|++|| .+++.+..+.+|..+|.+++|+|+...    +++++.|+.|++||+.+++.+..+.
T Consensus       114 ~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~d~~i~iwd~~~~~~~~~~~  188 (425)
T 1r5m_A          114 LAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTH----IISMDVENVTILWNVISGTVMQHFE  188 (425)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSE----EEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCE----EEEEecCCeEEEEECCCCcEEEEee
Confidence            57999999999999999999999 678889999999999999999996543    4448899999999999998877776


Q ss_pred             CC-CC---------------eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC
Q 035621           82 VP-EP---------------VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD  145 (387)
Q Consensus        82 ~~-~~---------------v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  145 (387)
                      .. ..               +.+++|+|++ .+++++.+|.|++||+++++.+..+..|...|.+++|+|++++|++++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  267 (425)
T 1r5m_A          189 LKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD  267 (425)
T ss_dssp             CC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred             ccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC
Confidence            43 23               8999999985 5888889999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCc
Q 035621          146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCA  224 (387)
Q Consensus       146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~  224 (387)
                      |+.|++||+            ........+..|...|.+++|+|++   ++++++.|+.|++||+++++.+..+. +...
T Consensus       268 d~~i~i~d~------------~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  332 (425)
T 1r5m_A          268 DGTLRIWHG------------GNGNSQNCFYGHSQSIVSASWVGDD---KVISCSMDGSVRLWSLKQNTLLALSIVDGVP  332 (425)
T ss_dssp             TSCEEEECS------------SSBSCSEEECCCSSCEEEEEEETTT---EEEEEETTSEEEEEETTTTEEEEEEECTTCC
T ss_pred             CCEEEEEEC------------CCCccceEecCCCccEEEEEECCCC---EEEEEeCCCcEEEEECCCCcEeEecccCCcc
Confidence            999999999            4556777888899999999999873   99999999999999999999988887 5789


Q ss_pred             eeEEEeCCCCCeEEEEccCCcEEEEeccccccccc-----------cccceeEeecccccc--cEEEEEEecCCCEEEEE
Q 035621          225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-----------HKGQELVTLANRHDG--VVVSVMMMNEGKNLVSA  291 (387)
Q Consensus       225 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~  291 (387)
                      +.+++|+|++++|++++.||.|++||+........           .........+..|..  .|++++|+|++++|+++
T Consensus       333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  412 (425)
T 1r5m_A          333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA  412 (425)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence            99999999999999999999999999987441000           000113444556765  99999999999999999


Q ss_pred             eCCCcEEEEECC
Q 035621          292 AEDGSVYIWEIE  303 (387)
Q Consensus       292 ~~dg~i~iwd~~  303 (387)
                      +.||.|++||++
T Consensus       413 ~~dg~i~iw~~~  424 (425)
T 1r5m_A          413 YSLQEGSVVAIP  424 (425)
T ss_dssp             ESSSCCEEEECC
T ss_pred             ecCceEEEEeec
Confidence            999999999986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.2e-41  Score=295.04  Aligned_cols=276  Identities=13%  Similarity=0.163  Sum_probs=223.5

Q ss_pred             ccccCCC-cEEEeeCCCCcEEEEeCCCCceeEecc--CCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621            2 LHHLPCN-EVILTSSPEGPITAYNPSSGAILAHFS--GSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSSTPL   77 (387)
Q Consensus         2 l~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~~~~   77 (387)
                      ++|+|++ ++|++|+.||.|+|||+.+++....+.  +|...|.+++|+| +.    ..+++++.|+.|++||+.+....
T Consensus        79 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~  154 (383)
T 3ei3_B           79 LEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT----NQLFVSSIRGATTLRDFSGSVIQ  154 (383)
T ss_dssp             EEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE----EEEEEEETTTEEEEEETTSCEEE
T ss_pred             EEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC----CEEEEEeCCCEEEEEECCCCceE
Confidence            5799999 999999999999999999888777665  6999999999999 43    34445899999999999864332


Q ss_pred             cccC---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 035621           78 HNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLISGGDDGVIATVP  153 (387)
Q Consensus        78 ~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd  153 (387)
                      ....   +...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+++|+|+++ ++++++.|+.|++||
T Consensus       155 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  233 (383)
T 3ei3_B          155 VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWD  233 (383)
T ss_dssp             EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEe
Confidence            2222   3367999999999999999999999999999 6778888999999999999999999 999999999999999


Q ss_pred             CCcccccCCCCCCCCccceEeeeccCCCeEEEEEee-CCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cC---------
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI-GSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FP---------  222 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~---------  222 (387)
                      ++...        .....+..+ .|...|.+++|+| ++  .+|++++.|+.|++||+++++....+. +.         
T Consensus       234 ~~~~~--------~~~~~~~~~-~~~~~v~~~~~s~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  302 (383)
T 3ei3_B          234 LRNIK--------DKNSYIAEM-PHEKPVNAAYFNPTDS--TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTP  302 (383)
T ss_dssp             GGGCC--------STTCEEEEE-ECSSCEEEEEECTTTS--CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCC
T ss_pred             CCCCC--------cccceEEEe-cCCCceEEEEEcCCCC--CEEEEEcCCCcEEEEECCCCccccccccccccccccccc
Confidence            94321        113344444 7999999999999 64  899999999999999999887665554 11         


Q ss_pred             --------CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecc-cccccEEEEEEecCCCEEEEEeC
Q 035621          223 --------CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLAN-RHDGVVVSVMMMNEGKNLVSAAE  293 (387)
Q Consensus       223 --------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~  293 (387)
                              ..+..++|+|++++  +++.|+.|++||+.++.        .+..+.. .|...+..++|+|++++|++|+ 
T Consensus       303 ~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~--------~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-  371 (383)
T 3ei3_B          303 IKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG--------LVHQLRDPNAAGIISLNKFSPTGDVLASGM-  371 (383)
T ss_dssp             CCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC--------EEEEECBTTBCSCCCEEEECTTSSEEEEEE-
T ss_pred             eEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc--------eeeeecCCCCCceEEEEEEecCccEEEEec-
Confidence                    23445677777766  77789999999998733        2333221 2567788889999999999997 


Q ss_pred             CCcEEEEECCC
Q 035621          294 DGSVYIWEIEK  304 (387)
Q Consensus       294 dg~i~iwd~~~  304 (387)
                      ||.|++||+++
T Consensus       372 d~~i~iw~~~~  382 (383)
T 3ei3_B          372 GFNILIWNRED  382 (383)
T ss_dssp             TTEEEEEECC-
T ss_pred             CCcEEEEecCC
Confidence            99999999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.8e-40  Score=332.42  Aligned_cols=365  Identities=14%  Similarity=0.187  Sum_probs=283.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|+|+|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+    +++++.|+.|++||+.+++.+..+.
T Consensus       621 ~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~----l~s~~~d~~v~vwd~~~~~~~~~~~  696 (1249)
T 3sfz_A          621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY----IATCSADKKVKIWDSATGKLVHTYD  696 (1249)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE----EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCE----EEEEeCCCeEEEEECCCCceEEEEc
Confidence            589999999999999999999999999999999999999999999996544    4458999999999999999888775


Q ss_pred             -CCCCeeeEEecc--CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621           82 -VPEPVAPLATTA--DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        82 -~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                       |...|.+++|+|  ++.++++|+.|+.|++||+++++++..+.+|...|++++|+|+++++++++.||.|++||+....
T Consensus       697 ~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~  776 (1249)
T 3sfz_A          697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN  776 (1249)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTE
T ss_pred             CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCc
Confidence             678999999999  55689999999999999999999999999999999999999999999999999999999985432


Q ss_pred             ccCCC-----------------------CCC-------------------CCccceEee-eccCCCeEEEEEeeCCCCce
Q 035621          159 DEHTD-----------------------DKN-------------------PDDLMLQKF-VAHNDSVTAITCCIGSFNSI  195 (387)
Q Consensus       159 ~~~~~-----------------------~~~-------------------~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~  195 (387)
                      .....                       ...                   ........+ .+|...+.+++|+|++  .+
T Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~  854 (1249)
T 3sfz_A          777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD--HL  854 (1249)
T ss_dssp             EEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST--TE
T ss_pred             ccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC--CE
Confidence            11000                       000                   011112222 3788899999999985  89


Q ss_pred             EEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccc----------------
Q 035621          196 IISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQ----------------  258 (387)
Q Consensus       196 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------  258 (387)
                      +++++.|+.|++||+.++..+..+. |...|.+++|+|+++++++++.||.|++|++.......                
T Consensus       855 l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  934 (1249)
T 3sfz_A          855 AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE  934 (1249)
T ss_dssp             EEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred             EEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence            9999999999999999999888887 67889999999999999999999999999975321000                


Q ss_pred             ------------------------------------------------------ccccceeEeecccccccEEEEEEecC
Q 035621          259 ------------------------------------------------------MHKGQELVTLANRHDGVVVSVMMMNE  284 (387)
Q Consensus       259 ------------------------------------------------------~~~~~~~~~~~~~~~~~v~~~~~s~~  284 (387)
                                                                            ............+|...|++++|+|+
T Consensus       935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~d 1014 (1249)
T 3sfz_A          935 TMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1014 (1249)
T ss_dssp             EEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSS
T ss_pred             cEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCC
Confidence                                                                  00011122334578899999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe-------cCCCceeeEEEecCCCCCCC-------CCcc
Q 035621          285 GKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT-------GIGGSRGCGVVKTGKAGNDS-------GGGV  350 (387)
Q Consensus       285 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-------~~~~  350 (387)
                      +++|++++.||.|++||+.+++.+... .| ...+.++.+.+       +.++.+.+|...++......       ....
T Consensus      1015 g~~l~s~~~dg~i~vwd~~~~~~~~~~-~~-~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~ 1092 (1249)
T 3sfz_A         1015 GKTLISSSEDSVIQVWNWQTGDYVFLQ-AH-QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA 1092 (1249)
T ss_dssp             SSCEEEECSSSBEEEEETTTTEEECCB-CC-SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCceEEEe-cC-CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEE
Confidence            999999999999999999999887533 33 45777775544       34455566665554431110       0111


Q ss_pred             eeeeccceeccccccchhhhceee
Q 035621          351 FEMYGEKLLDLSIKNTIELENVMT  374 (387)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~  374 (387)
                      +..-+...+..+.++++++|+..+
T Consensus      1093 ~s~d~~~l~s~s~d~~v~iwd~~~ 1116 (1249)
T 3sfz_A         1093 ISSDATKFSSTSADKTAKIWSFDL 1116 (1249)
T ss_dssp             ECSSSSSCEEECCSSCCCEECSSS
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCC
Confidence            222233344555778888887654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.9e-41  Score=294.56  Aligned_cols=292  Identities=13%  Similarity=0.178  Sum_probs=230.1

Q ss_pred             ccccCCCc-EEEeeCC---CCcEEEEeCCCCceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC-
Q 035621            2 LHHLPCNE-VILTSSP---EGPITAYNPSSGAILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST-   75 (387)
Q Consensus         2 l~~s~~~~-~l~~~~~---dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~-   75 (387)
                      ++|+|++. ++++|+.   ||.|+|||+.+++..... .+|..+|.+++|+|+.. ....+++++.||.|++||+.+++ 
T Consensus        24 ~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~  102 (357)
T 3i2n_A           24 CKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSL-QQRYLATGDFGGNLHIWNLEAPEM  102 (357)
T ss_dssp             EEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCT-TTCCEEEEETTSCEEEECTTSCSS
T ss_pred             EEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCC-CCceEEEecCCCeEEEEeCCCCCc
Confidence            57999985 5566766   899999999988765443 36899999999999510 02344558999999999999887 


Q ss_pred             cccccC-CCCCeeeEE------eccCCCEEEEecCCCcEEEEeCCCCc-eeEEccCCCC----CeEEEE----EcCCCCE
Q 035621           76 PLHNIP-VPEPVAPLA------TTADGSYLFTGGLSGNVYAISVPKGD-ILRSFSAHDK----PVSCLK----ISPDGSL  139 (387)
Q Consensus        76 ~~~~~~-~~~~v~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~  139 (387)
                      .+..+. |...|.+++      |+|++++|++++.||.|++||+++++ .+..+..|.+    .+.+++    |+|++++
T Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  182 (357)
T 3i2n_A          103 PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERV  182 (357)
T ss_dssp             CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCE
T ss_pred             cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCE
Confidence            666665 678899995      57899999999999999999999887 6777766554    899998    7889999


Q ss_pred             EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC-CCceEEEEeCCCcEEEEeCCCCcEEEE
Q 035621          140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS-FNSIIISCSMDCTCKFWRLLNGTHLST  218 (387)
Q Consensus       140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~  218 (387)
                      +++++.||.|++||++            .... .....|...|.+++|+|.. ++.++++++.||.|++||+++++....
T Consensus       183 l~~~~~d~~i~i~d~~------------~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  249 (357)
T 3i2n_A          183 VCAGYDNGDIKLFDLR------------NMAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG  249 (357)
T ss_dssp             EEEEETTSEEEEEETT------------TTEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred             EEEEccCCeEEEEECc------------cCce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence            9999999999999993            3333 4456788999999999821 248999999999999999987665433


Q ss_pred             E------ecCCceeEEEeCCCCC-eEEEEccCCcEEEEeccccccccccc----------cceeEeecccccccEEEEEE
Q 035621          219 V------TFPCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQSRQQMHK----------GQELVTLANRHDGVVVSVMM  281 (387)
Q Consensus       219 ~------~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~  281 (387)
                      +      .+...|.+++|+|+++ ++++++.||.|++||++.........          ..........|...|++++|
T Consensus       250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~  329 (357)
T 3i2n_A          250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW  329 (357)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred             eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence            3      3778999999999998 89999999999999998654321100          01234445679999999999


Q ss_pred             ecCCCEEE-EEeCCCcEEEEECCCccE
Q 035621          282 MNEGKNLV-SAAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       282 s~~~~~l~-s~~~dg~i~iwd~~~~~~  307 (387)
                      +|++++|+ +++.||.|++||+.+.+.
T Consensus       330 s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          330 SPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             CSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             cCCCCeEEEEecCCCcEEEEECCCccc
Confidence            99999998 899999999999987764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1e-40  Score=297.75  Aligned_cols=285  Identities=13%  Similarity=0.151  Sum_probs=234.1

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ..|+|++++|++|+.||.|++||+.+++....+.+|...|.+++|+|++.+    +++++.|+.|++||+.+++.+..+.
T Consensus       103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~s~d~~i~iwd~~~~~~~~~~~  178 (420)
T 3vl1_A          103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEA----LISSSQDMQLKIWSVKDGSNPRTLI  178 (420)
T ss_dssp             EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSE----EEEEETTSEEEEEETTTCCCCEEEE
T ss_pred             EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCE----EEEEeCCCeEEEEeCCCCcCceEEc
Confidence            368999999999999999999999999999999999999999999996544    4458999999999999998887776


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC---CCCCeEE---------------------EEEcCC
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA---HDKPVSC---------------------LKISPD  136 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~---------------------~~~~~~  136 (387)
                       |...|.+++|+|++++|++++.||.|++||+++++.+..+..   |...+.+                     ++|+|+
T Consensus       179 ~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  258 (420)
T 3vl1_A          179 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY  258 (420)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC
Confidence             778999999999999999999999999999999998888864   3344444                     455789


Q ss_pred             CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE
Q 035621          137 GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH  215 (387)
Q Consensus       137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  215 (387)
                      +++|++++.||.|++||++            .......+ ..|...|.+++|+|++ ..+|++++.||.|++||+++++.
T Consensus       259 ~~~l~~~~~dg~i~i~d~~------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~g~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          259 GKYVIAGHVSGVITVHNVF------------SKEQTIQLPSKFTCSCNSLTVDGNN-ANYIYAGYENGMLAQWDLRSPEC  325 (420)
T ss_dssp             TEEEEEEETTSCEEEEETT------------TCCEEEEECCTTSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTS
T ss_pred             CCEEEEEcCCCeEEEEECC------------CCceeEEcccccCCCceeEEEeCCC-CCEEEEEeCCCeEEEEEcCCCcC
Confidence            9999999999999999993            33444444 4588999999999985 23999999999999999998754


Q ss_pred             -EEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC---EEE
Q 035621          216 -LSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK---NLV  289 (387)
Q Consensus       216 -~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~  289 (387)
                       +..+.  +...+.++.+ +++++|++++.|+.|++|++....................|...|.+++|+|+++   .++
T Consensus       326 ~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~  404 (420)
T 3vl1_A          326 PVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVL  404 (420)
T ss_dssp             CSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEE
T ss_pred             chhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEE
Confidence             55555  5567777755 5788999999999999999987432221111111222347889999999999999   788


Q ss_pred             EEeCCCcEEEEECCC
Q 035621          290 SAAEDGSVYIWEIEK  304 (387)
Q Consensus       290 s~~~dg~i~iwd~~~  304 (387)
                      +.+.+|.+.+|++++
T Consensus       405 a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          405 EVGKNNFCALYNLSN  419 (420)
T ss_dssp             EEETTTEEEEEESCC
T ss_pred             EEcCCceEEEEeccC
Confidence            888899999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-40  Score=318.49  Aligned_cols=196  Identities=15%  Similarity=0.234  Sum_probs=168.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|+|++++||+|+.||.|+||+..+.+....+. |..+|.+++|+| +.    ++++++.|++|++||+.+++++..+.
T Consensus        23 lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~----~L~S~s~D~~v~lWd~~~~~~~~~~~   96 (902)
T 2oaj_A           23 AAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GI----YLVVINAKDTVYVLSLYSQKVLTTVF   96 (902)
T ss_dssp             EEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TT----EEEEEETTCEEEEEETTTCSEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CC----EEEEEECcCeEEEEECCCCcEEEEEc
Confidence            6899999999999999999999998877766654 788999999999 33    34448899999999999999988888


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee-----------EEccCCCCCeEEEEEcCC-CCEEEEEeCCCcE
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL-----------RSFSAHDKPVSCLKISPD-GSLLISGGDDGVI  149 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i  149 (387)
                      +...|.+++|+|++++|++|+.||.|++||++++++.           ..+.+|.++|++++|+|+ +..+++|+.||.|
T Consensus        97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v  176 (902)
T 2oaj_A           97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL  176 (902)
T ss_dssp             CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE
T ss_pred             CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE
Confidence            8889999999999999999999999999999988753           234679999999999996 5789999999999


Q ss_pred             EEEeCCcccccCCCCCCCCccceEeeec------------------cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC
Q 035621          150 ATVPIFQLVDEHTDDKNPDDLMLQKFVA------------------HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL  211 (387)
Q Consensus       150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  211 (387)
                       +||++            ....+..+..                  |...|.+++|+|++  .+|++++.||+|++||++
T Consensus       177 -lWd~~------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg--~~lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          177 -TYSLV------------ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS--LHIITIHEDNSLVFWDAN  241 (902)
T ss_dssp             -EEETT------------TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS--SEEEEEETTCCEEEEETT
T ss_pred             -EEECC------------CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC--CEEEEEECCCeEEEEECC
Confidence             99994            3344444443                  35789999999985  899999999999999999


Q ss_pred             CCcEEEE
Q 035621          212 NGTHLST  218 (387)
Q Consensus       212 ~~~~~~~  218 (387)
                      +++++..
T Consensus       242 ~g~~~~~  248 (902)
T 2oaj_A          242 SGHMIMA  248 (902)
T ss_dssp             TCCEEEE
T ss_pred             CCcEEEE
Confidence            8877653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.6e-39  Score=292.18  Aligned_cols=286  Identities=16%  Similarity=0.303  Sum_probs=248.9

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-   81 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-   81 (387)
                      +++++|++|++|+.||.|++||+.+++.+..+.+|..+|.+++|+++      .+++++.||.|++||+.+++.+..+. 
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~------~l~s~~~dg~i~vwd~~~~~~~~~~~~  197 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN------IIISGSTDRTLKVWNAETGECIHTLYG  197 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT------EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCC------EEEEEeCCCeEEEEECCcCcEEEEECC
Confidence            56788999999999999999999999999999999999999999863      34458899999999999998887776 


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                      |...|.+++|+  ++.+++|+.||.|++||+++++.+..+.+|...|.+++|  +++++++++.||.|++||+       
T Consensus       198 h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~-------  266 (445)
T 2ovr_B          198 HTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDP-------  266 (445)
T ss_dssp             CSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEG-------
T ss_pred             CCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEEC-------
Confidence            67789999995  568999999999999999999999999999999999999  7789999999999999999       


Q ss_pred             CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEE
Q 035621          162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAA  240 (387)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~  240 (387)
                           .....+..+.+|...|.++.+  +  +.++++++.|+.|++||+++++.+..+. +...+.++.+  ++++++++
T Consensus       267 -----~~~~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~  335 (445)
T 2ovr_B          267 -----ETETCLHTLQGHTNRVYSLQF--D--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSG  335 (445)
T ss_dssp             -----GGTEEEEEECCCSSCEEEEEE--C--SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEE
T ss_pred             -----CCCcEeEEecCCCCceEEEEE--C--CCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEE
Confidence                 556678888899999999998  3  4899999999999999999999998887 5667777776  56799999


Q ss_pred             ccCCcEEEEeccccccccccccceeEeec--ccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee----cc
Q 035621          241 GSDGLIYKGLLKYQSRQQMHKGQELVTLA--NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK----NE  314 (387)
Q Consensus       241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~  314 (387)
                      +.||.|++||+.++.        ....+.  ..|...|++++|+  +++|++|+.||.|++||+.+++.+..+.    ..
T Consensus       336 ~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~  405 (445)
T 2ovr_B          336 NADSTVKIWDIKTGQ--------CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG  405 (445)
T ss_dssp             ETTSCEEEEETTTCC--------EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGG
T ss_pred             eCCCeEEEEECCCCc--------EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCC
Confidence            999999999998732        222221  2488899999995  5799999999999999999999998883    24


Q ss_pred             cCCCceeEEEEe
Q 035621          315 LAGSISEMVIAT  326 (387)
Q Consensus       315 ~~~~v~~~~~~~  326 (387)
                      +.+.|+++.|++
T Consensus       406 ~~~~v~~~~~s~  417 (445)
T 2ovr_B          406 SGGVVWRIRASN  417 (445)
T ss_dssp             GTCEEEEEEECS
T ss_pred             CCceEEEEEecC
Confidence            466888888875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-39  Score=277.88  Aligned_cols=274  Identities=16%  Similarity=0.190  Sum_probs=234.5

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC---ccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST---PLH   78 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~---~~~   78 (387)
                      ++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|+..+.    ++++.|+.+++|++....   ...
T Consensus        24 ~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l----~~~~~dg~i~~~~~~~~~~~~~~~   98 (313)
T 3odt_A           24 VVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELL----LFGGKDTMINGVPLFATSGEDPLY   98 (313)
T ss_dssp             EEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEE----EEEETTSCEEEEETTCCTTSCC-C
T ss_pred             EEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEE----EEecCCCeEEEEEeeecCCCCccc
Confidence            467 899999999999999999999999999999999999999999965544    448999999999997653   333


Q ss_pred             ccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCc
Q 035621           79 NIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        79 ~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      .+. |...|.+++|  +++++++++.||.|++||  .++....+..|...+.+++|.| +++++++++.||.|++||.. 
T Consensus        99 ~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-  173 (313)
T 3odt_A           99 TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-  173 (313)
T ss_dssp             EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-
T ss_pred             chhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-
Confidence            333 6788999999  577999999999999999  6778888889999999999998 89999999999999999862 


Q ss_pred             ccccCCCCCCCCccceEeeec-cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCC
Q 035621          157 LVDEHTDDKNPDDLMLQKFVA-HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTE  234 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~  234 (387)
                                   .....+.. |...+.+++|+|++  . +++++.|+.|++||+++++.+..+. +...+.+++|+|++
T Consensus       174 -------------~~~~~~~~~~~~~i~~~~~~~~~--~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  237 (313)
T 3odt_A          174 -------------KVIKTFSGIHNDVVRHLAVVDDG--H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG  237 (313)
T ss_dssp             -------------EEEEEECSSCSSCEEEEEEEETT--E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred             -------------ceEEEEeccCcccEEEEEEcCCC--e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC
Confidence                         23445555 88999999999985  4 9999999999999999999999887 77899999999999


Q ss_pred             CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          235 TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       235 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                       .+++++.||.|++||+....         ....+..|...|.+++|+|+++ +++++.||.|++||+++++.+....
T Consensus       238 -~l~~~~~dg~v~iwd~~~~~---------~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~  304 (313)
T 3odt_A          238 -DIVSCGEDRTVRIWSKENGS---------LKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE  304 (313)
T ss_dssp             -CEEEEETTSEEEEECTTTCC---------EEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred             -CEEEEecCCEEEEEECCCCc---------eeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence             69999999999999998732         2333457888999999999998 6678999999999999988776554

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4e-39  Score=279.31  Aligned_cols=253  Identities=13%  Similarity=0.152  Sum_probs=206.1

Q ss_pred             ceeEeccCCCCCceeEEE-----cC-ccceeeeccccCCCCCeEEEEEccCCC-------ccccc-CCCCCeeeEEeccC
Q 035621           29 AILAHFSGSRSPRRGLTF-----AG-KPFIAASHISPTTGSGSVHLYNLWSST-------PLHNI-PVPEPVAPLATTAD   94 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~-----~~-~~~~~~~~~~~~~~d~~v~vw~~~~~~-------~~~~~-~~~~~v~~~~~~~~   94 (387)
                      +....+.+|..+|++++|     ++ +.    ..+++++.|++|++||+.+.+       +...+ .|...|.+++|+|+
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~----~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~   87 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDS----PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE   87 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCC----CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCC----CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence            456678999999999999     54 33    345569999999999997543       22233 37789999999999


Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621           95 GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK  174 (387)
Q Consensus        95 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  174 (387)
                      +.++++|+.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+..             .....
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-------------~~~~~  154 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-------------ECKFS  154 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-------------CEEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-------------Cceee
Confidence            99999999999999999999999999999999999999999999999999999999999831             11222


Q ss_pred             ---eeccCCCeEEEEEeeCCC--------CceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEcc
Q 035621          175 ---FVAHNDSVTAITCCIGSF--------NSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       175 ---~~~~~~~i~~~~~~~~~~--------~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~  242 (387)
                         ...|...|.+++|+|...        +.+|++++.|+.|++||. +.+....+. |...|.+++|+|++++|++++.
T Consensus       155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~  233 (343)
T 2xzm_R          155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK  233 (343)
T ss_dssp             CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC
Confidence               236888999999998742        268999999999999994 455555665 7789999999999999999999


Q ss_pred             CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEE
Q 035621          243 DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVM  309 (387)
Q Consensus       243 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  309 (387)
                      ||.|++||+....       .....+  .+...|.+++|+|++.+++++ .|+.|++||+.+++...
T Consensus       234 dg~v~iwd~~~~~-------~~~~~~--~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~  290 (343)
T 2xzm_R          234 DKKLLIWDILNLT-------YPQREF--DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAP  290 (343)
T ss_dssp             TCEEEEEESSCCS-------SCSEEE--ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCS
T ss_pred             CCeEEEEECCCCc-------ccceee--cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCc
Confidence            9999999995421       111111  245679999999999887755 57889999998876554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-40  Score=297.32  Aligned_cols=282  Identities=15%  Similarity=0.178  Sum_probs=226.3

Q ss_pred             ccccC-CCcEEEeeCCCCcEEEEeCCC---Cc---eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc--
Q 035621            2 LHHLP-CNEVILTSSPEGPITAYNPSS---GA---ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW--   72 (387)
Q Consensus         2 l~~s~-~~~~l~~~~~dg~i~iwd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~--   72 (387)
                      ++|+| ++++|++|+.||.|+|||+.+   +.   ....+ +|..+|.+++|+|+...    +++++.||.|++||+.  
T Consensus        69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~----l~s~s~dg~i~vwd~~~~  143 (437)
T 3gre_A           69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDA----FAVSSKDGQIIVLKVNHY  143 (437)
T ss_dssp             EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSE----EEEEETTSEEEEEEEEEE
T ss_pred             EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCE----EEEEeCCCEEEEEEeccc
Confidence            57999 999999999999999999876   43   22333 48999999999995543    4458999999999995  


Q ss_pred             -CCCcccccC-------------CCCCeeeEE--eccCCCEEEEecCCCcEEEEeCCCCceeEEccC--CCCCeEEEEEc
Q 035621           73 -SSTPLHNIP-------------VPEPVAPLA--TTADGSYLFTGGLSGNVYAISVPKGDILRSFSA--HDKPVSCLKIS  134 (387)
Q Consensus        73 -~~~~~~~~~-------------~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~  134 (387)
                       +++......             +...+.++.  +++++.+|++++.||.|++||+++++++..+..  |...|++++|+
T Consensus       144 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s  223 (437)
T 3gre_A          144 QQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID  223 (437)
T ss_dssp             EETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC
T ss_pred             cCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC
Confidence             444433222             345566666  557899999999999999999999999999987  88999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee-ccCCCeEEEEEeeC--CCCceEEEEeCCCcEEEEeCC
Q 035621          135 PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHNDSVTAITCCIG--SFNSIIISCSMDCTCKFWRLL  211 (387)
Q Consensus       135 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~~~l~s~~~d~~i~iwd~~  211 (387)
                      |++++|++|+.||.|++||+            .....+..+. .|..+|.+++++|.  .++.+|++++.|+.|++||++
T Consensus       224 ~~~~~l~s~~~dg~i~iwd~------------~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~  291 (437)
T 3gre_A          224 EECCVLILGTTRGIIDIWDI------------RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV  291 (437)
T ss_dssp             TTSCEEEEEETTSCEEEEET------------TTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred             CCCCEEEEEcCCCeEEEEEc------------CCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence            99999999999999999999            4556667665 78889999988765  346799999999999999999


Q ss_pred             CCcEEEEEe---------------------------cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccc-
Q 035621          212 NGTHLSTVT---------------------------FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ-  263 (387)
Q Consensus       212 ~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-  263 (387)
                      +++++..+.                           +...|.+++|+ ++++|++++.|+.|++||+..+......... 
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  370 (437)
T 3gre_A          292 KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS  370 (437)
T ss_dssp             TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred             CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence            999888876                           33458888999 7789999999999999999886543322110 


Q ss_pred             ---------------------------eeEeecccccccEEEEEEecC--CCEEEEEeCCCcEEEEE
Q 035621          264 ---------------------------ELVTLANRHDGVVVSVMMMNE--GKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       264 ---------------------------~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd  301 (387)
                                                 ........|...|++++|+++  +.+|++|+.||.|+||+
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          371 RFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                                       000112248999999999998  77999999999999995

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-41  Score=302.83  Aligned_cols=286  Identities=9%  Similarity=0.013  Sum_probs=213.2

Q ss_pred             cCCCcEEEeeCCCCcEEEEeCCCCcee----EeccCCCCCceeEEEcCccce--eeeccccCCCCCeEEEEEccCCCcc-
Q 035621            5 LPCNEVILTSSPEGPITAYNPSSGAIL----AHFSGSRSPRRGLTFAGKPFI--AASHISPTTGSGSVHLYNLWSSTPL-   77 (387)
Q Consensus         5 s~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~d~~v~vw~~~~~~~~-   77 (387)
                      +|+++.|++++.|++|+|||+.+++..    ..+.+|.+.|.+++|+|+...  ....+++++.||+|++||+.++... 
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~  249 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV  249 (524)
T ss_dssp             ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred             chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence            344455666778999999999877642    346678889999999995211  1235666999999999999876432 


Q ss_pred             ----------ccc-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-eeEEccCCCCCeEEE--EEcCCC-CEEEE
Q 035621           78 ----------HNI-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD-ILRSFSAHDKPVSCL--KISPDG-SLLIS  142 (387)
Q Consensus        78 ----------~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~  142 (387)
                                ..+ .|...|.+++|++++ .|++|+.||+|++||+++++ +...+.+|...|+++  +|+|++ .+|++
T Consensus       250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS  328 (524)
T 2j04_B          250 HVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVST  328 (524)
T ss_dssp             SEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEE
T ss_pred             ccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEE
Confidence                      122 256789999999864 89999999999999998764 455688999999999  578887 89999


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC--CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe
Q 035621          143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND--SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT  220 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  220 (387)
                      ++.|++|++||++            .......+.+|..  .|.+++|+|++  ..+++++.|++|++||++++.++..+.
T Consensus       329 ~S~D~tvklWD~~------------~~~~~~~~~~~~~~~~v~~v~fsp~~--~~l~s~~~d~tv~lwd~~~~~~~~~l~  394 (524)
T 2j04_B          329 VAVDGYFYIFNPK------------DIATTKTTVSRFRGSNLVPVVYCPQI--YSYIYSDGASSLRAVPSRAAFAVHPLV  394 (524)
T ss_dssp             EETTSEEEEECGG------------GHHHHCEEEEECSCCSCCCEEEETTT--TEEEEECSSSEEEEEETTCTTCCEEEE
T ss_pred             eccCCeEEEEECC------------CCCcccccccccccCcccceEeCCCc--CeEEEeCCCCcEEEEECcccccceeee
Confidence            9999999999993            4445555666653  57899999975  789999999999999999998876665


Q ss_pred             -cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccc---------------c--c-cc-----------------ce
Q 035621          221 -FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQ---------------M--H-KG-----------------QE  264 (387)
Q Consensus       221 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---------------~--~-~~-----------------~~  264 (387)
                       |...|++++|+|++++|++|+.||.|++||........               .  . .+                 ..
T Consensus       395 gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~  474 (524)
T 2j04_B          395 SRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDV  474 (524)
T ss_dssp             ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC------
T ss_pred             cCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCc
Confidence             78899999999999999999999999999864321100               0  0 00                 11


Q ss_pred             eEeecccccccEEEEEEecCCC---EEEEEeCCCcEEEEECCCc
Q 035621          265 LVTLANRHDGVVVSVMMMNEGK---NLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       265 ~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~dg~i~iwd~~~~  305 (387)
                      ....+.+|...|.+++|+|++.   .+|+|+.||.|+||++...
T Consensus       475 ~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          475 SKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             -------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             ceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence            2233457889999999999964   9999999999999997743

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.7e-39  Score=275.55  Aligned_cols=280  Identities=21%  Similarity=0.306  Sum_probs=231.7

Q ss_pred             CccccCCCcEEEeeCCCCcEEEEeCCCCceeEecc--CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            1 LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFS--GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      +|+||+++ +||+|. |++|+|||+.+++.+..+.  +|...|++++|+|++.+.    ++|+.||.|++||+++++++.
T Consensus        30 ~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l----~sgs~Dg~v~iw~~~~~~~~~  103 (318)
T 4ggc_A           30 LVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL----AVGTSSAEVQLWDVQQQKRLR  103 (318)
T ss_dssp             CEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE----EEEETTSEEEEEETTTTEEEE
T ss_pred             EEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEE----EEEECCCcEEEeecCCceeEE
Confidence            37899886 777765 8999999999999887664  677889999999965544    459999999999999998887


Q ss_pred             ccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621           79 NIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        79 ~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      .+. |...+.+  +++++..+++++.++.+++|+.... ..+..+.+|...+..+.++++++++++++.|+.|++||+..
T Consensus       104 ~~~~h~~~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          104 NMTSHSARVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             EEECCSSCEEE--EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EecCccceEEE--eecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence            776 4445554  4556789999999999999998766 45667789999999999999999999999999999999953


Q ss_pred             ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE--EEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCC
Q 035621          157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII--ISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTE  234 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l--~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  234 (387)
                      ..        ...........+...|.++.++|.. +..+  ++++.+++|++||...........+...+..+.|+|++
T Consensus       182 ~~--------~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~  252 (318)
T 4ggc_A          182 GE--------GGWVPLQTFTQHQGAVKAVAWCPWQ-SNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHY  252 (318)
T ss_dssp             BT--------TBSCCSEEECCCCSCEEEEEECTTS-TTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTT
T ss_pred             Cc--------ccccceeeecccCCceEEEEecCCC-CcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccc
Confidence            21        1223445566788899999999876 3333  46677899999999999999888899999999999999


Q ss_pred             CeEEEEc--cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621          235 TDFFAAG--SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       235 ~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  306 (387)
                      +.+++++  .|+.|++||+.++        .. ...+.+|.+.|++++|+|++++|+||+.||+|+|||+.+..
T Consensus       253 ~~~~~~sg~~d~~i~iwd~~~~--------~~-~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          253 KELISGHGFAQNQLVIWKYPTM--------AK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             TEEEEEECTTTCCEEEEETTTC--------CE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             cceEEEEEcCCCEEEEEECCCC--------cE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            9888764  6999999999873        22 33446899999999999999999999999999999997653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.1e-39  Score=274.26  Aligned_cols=254  Identities=13%  Similarity=0.155  Sum_probs=207.2

Q ss_pred             EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC--CcccccC-CCCCeeeEEecc--CCCEEEEecCCCc
Q 035621           32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--TPLHNIP-VPEPVAPLATTA--DGSYLFTGGLSGN  106 (387)
Q Consensus        32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~dg~  106 (387)
                      ..+.+|...|++++|+|++..    +++++.|++|++||+...  +.+..+. |..+|.+++|++  ++++|++|+.|++
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~----las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~   78 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKR----MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   78 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSE----EEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred             eeccCCcCceEEEEECCCCCE----EEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence            457889999999999996544    455999999999999753  4555554 778999999986  3899999999999


Q ss_pred             EEEEeCCCCc--eeEEccCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621          107 VYAISVPKGD--ILRSFSAHDKPVSCLKISPD--GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV  182 (387)
Q Consensus       107 i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  182 (387)
                      |++||+++++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||++..          .......+.+|...|
T Consensus        79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~----------~~~~~~~~~~h~~~v  148 (297)
T 2pm7_B           79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN----------GTTSPIIIDAHAIGV  148 (297)
T ss_dssp             EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS----------SCBCCEEEECCSSCE
T ss_pred             EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC----------CceeeeeeecccCcc
Confidence            9999998874  56677889999999999997  889999999999999999431          111235678899999


Q ss_pred             EEEEEeeCC-----------CCceEEEEeCCCcEEEEeCCCCc----EEEEEe-cCCceeEEEeCCCC---CeEEEEccC
Q 035621          183 TAITCCIGS-----------FNSIIISCSMDCTCKFWRLLNGT----HLSTVT-FPCAIMGLALDPTE---TDFFAAGSD  243 (387)
Q Consensus       183 ~~~~~~~~~-----------~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~---~~l~~~~~d  243 (387)
                      .+++|+|+.           ++++|++|+.|++|++||+++++    ....+. |...|.+++|+|++   .+|++++.|
T Consensus       149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D  228 (297)
T 2pm7_B          149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD  228 (297)
T ss_dssp             EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence            999999863           24699999999999999998776    445555 77899999999985   889999999


Q ss_pred             CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          244 GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       244 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      +.|++||+.......    .........|...|.+++|+|++++|++++.||.|++|+..
T Consensus       229 ~~v~iWd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          229 RTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SCEEEEEESSTTSCC----EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CcEEEEEeCCCCCcc----ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            999999997632110    00011113678899999999999999999999999999976

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.6e-40  Score=293.22  Aligned_cols=281  Identities=14%  Similarity=0.213  Sum_probs=234.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      .++++++++|++|+.||.|++||+.+++....+.+|..+|.+++|.++      .+++++.||.|++||+.+++.+..+.
T Consensus       137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~------~l~sg~~dg~i~vwd~~~~~~~~~~~  210 (435)
T 1p22_A          137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER------VIITGSSDSTVRVWDVNTGEMLNTLI  210 (435)
T ss_dssp             EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSS------EEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred             EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCC------EEEEEcCCCeEEEEECCCCcEEEEEc
Confidence            467789999999999999999999999999999999999999999542      34458899999999999998887776


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee---EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL---RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL  157 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  157 (387)
                       |...|.+++|++  +.+++|+.||.|++||+++++..   ..+.+|...|.+++|  +++++++++.||.|++||+   
T Consensus       211 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~---  283 (435)
T 1p22_A          211 HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNT---  283 (435)
T ss_dssp             CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---
T ss_pred             CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEEC---
Confidence             667899999974  59999999999999999888765   667789999999999  7789999999999999999   


Q ss_pred             cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCe
Q 035621          158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETD  236 (387)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~  236 (387)
                               .....+..+.+|...|.++.+.    +.++++|+.||.|++||+++++++..+. +...|.+++|  ++.+
T Consensus       284 ---------~~~~~~~~~~~~~~~v~~~~~~----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~  348 (435)
T 1p22_A          284 ---------STCEFVRTLNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKR  348 (435)
T ss_dssp             ---------TTCCEEEEEECCSSCEEEEEEE----TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSE
T ss_pred             ---------CcCcEEEEEcCCCCcEEEEEeC----CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCE
Confidence                     5667888899999999999883    3799999999999999999999999888 7788999999  7889


Q ss_pred             EEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       237 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      +++|+.||.|++||+.................+.+|.+.|++++|  ++++|++|+.||.|++||+.+........
T Consensus       349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~  422 (435)
T 1p22_A          349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP  422 (435)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------
T ss_pred             EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC
Confidence            999999999999999875432222122244445689999999999  78899999999999999999877655443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.4e-39  Score=299.90  Aligned_cols=294  Identities=13%  Similarity=0.102  Sum_probs=249.0

Q ss_pred             ccccCCCc-EEEeeCCCCcEEEEeCCCCceeEeccCCCC---CceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCCc
Q 035621            2 LHHLPCNE-VILTSSPEGPITAYNPSSGAILAHFSGSRS---PRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSSTP   76 (387)
Q Consensus         2 l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~~   76 (387)
                      ++|+|+++ +|++++.|+.|++||+.+++.+..+.+|..   .|.+++|+|+ +.+    +++++.|+.|++||+.+++.
T Consensus       166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~~~~~dg~i~vwd~~~~~~  241 (615)
T 1pgu_A          166 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF----VITVGSDRKISCFDGKSGEF  241 (615)
T ss_dssp             EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE----EEEEETTCCEEEEETTTCCE
T ss_pred             EEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCE----EEEEeCCCeEEEEECCCCCE
Confidence            57999998 899999999999999999999999999999   9999999996 544    44488999999999999999


Q ss_pred             cccc-----CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCC----CCCeEEEEEcCCCCEEEEEeCCC
Q 035621           77 LHNI-----PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH----DKPVSCLKISPDGSLLISGGDDG  147 (387)
Q Consensus        77 ~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg  147 (387)
                      +..+     .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..+    ...+.++.|. +++++++++.||
T Consensus       242 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g  319 (615)
T 1pgu_A          242 LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG  319 (615)
T ss_dssp             EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS
T ss_pred             eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC
Confidence            8888     678899999999 9999999999999999999999998888766    3678888886 889999999999


Q ss_pred             cEEEEeCCcccccCCCCCCCCccceEee---------------------------------eccCCCeEEEEEeeCCCCc
Q 035621          148 VIATVPIFQLVDEHTDDKNPDDLMLQKF---------------------------------VAHNDSVTAITCCIGSFNS  194 (387)
Q Consensus       148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~i~~~~~~~~~~~~  194 (387)
                      .|++||+..            ...+..+                                 ..|...|.+++| +.  +.
T Consensus       320 ~i~~~d~~~------------~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~--~~  384 (615)
T 1pgu_A          320 TLNFYELGH------------DEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SK--AQ  384 (615)
T ss_dssp             CEEEEETTE------------EEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CS--TT
T ss_pred             CEEEEECCC------------CcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CC--Cc
Confidence            999999953            2233333                                 345566666666 22  36


Q ss_pred             eEEEEeCCCcEEEEeCC----------------------------------CCcEEEEEecCCceeEEEeCCCCCeEEEE
Q 035621          195 IIISCSMDCTCKFWRLL----------------------------------NGTHLSTVTFPCAIMGLALDPTETDFFAA  240 (387)
Q Consensus       195 ~l~s~~~d~~i~iwd~~----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  240 (387)
                      .+++++.|+.+++||+.                                  +++.+..+.+...+.+++|+  +++++++
T Consensus       385 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~  462 (615)
T 1pgu_A          385 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVG  462 (615)
T ss_dssp             CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEE
T ss_pred             EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEe
Confidence            88888888888888875                                  45566667778899999999  8899999


Q ss_pred             cc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCc
Q 035621          241 GS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSI  319 (387)
Q Consensus       241 ~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  319 (387)
                      +. |+.|++||+.....        .......|...|++++|+|++++|++++.||.|++||+.+++++..+...+...|
T Consensus       463 ~~~d~~i~~~~~~~~~~--------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v  534 (615)
T 1pgu_A          463 LEEGNTIQVFKLSDLEV--------SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI  534 (615)
T ss_dssp             ETTTSCEEEEETTEEEE--------EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred             ecCCCeEEEEECCCccc--------cccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCce
Confidence            99 99999999987321        1134457999999999999999999999999999999999999999887346689


Q ss_pred             eeEEEEe
Q 035621          320 SEMVIAT  326 (387)
Q Consensus       320 ~~~~~~~  326 (387)
                      +++.|++
T Consensus       535 ~~~~~sp  541 (615)
T 1pgu_A          535 NAISWKP  541 (615)
T ss_dssp             EEEEECC
T ss_pred             eEEEEcC
Confidence            9999987

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.6e-39  Score=287.36  Aligned_cols=297  Identities=12%  Similarity=0.116  Sum_probs=233.2

Q ss_pred             ccccC-CCcEEEeeCCCCcEEEEeCCCCceeEecc-------------CCCCCceeEEEcC-ccceeeeccccCCCCCeE
Q 035621            2 LHHLP-CNEVILTSSPEGPITAYNPSSGAILAHFS-------------GSRSPRRGLTFAG-KPFIAASHISPTTGSGSV   66 (387)
Q Consensus         2 l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v   66 (387)
                      ++|+| ++++|++|+.||.|++||+.+++....+.             +|..+|.+++|+| +..+    +++++.||.|
T Consensus        49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~s~~~d~~i  124 (408)
T 4a11_B           49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM----FTSSSFDKTL  124 (408)
T ss_dssp             EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC----EEEEETTSEE
T ss_pred             EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE----EEEEeCCCeE
Confidence            67999 99999999999999999999887655443             5999999999999 4433    3448899999


Q ss_pred             EEEEccCCCcccccCCCCCeeeEEeccC---CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EEEE
Q 035621           67 HLYNLWSSTPLHNIPVPEPVAPLATTAD---GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LLIS  142 (387)
Q Consensus        67 ~vw~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~  142 (387)
                      ++||+.+++....+.+...+.++.+++.   +.++++++.+|.|++||+++++.+..+..|...|.+++|+|+++ ++++
T Consensus       125 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~  204 (408)
T 4a11_B          125 KVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILAT  204 (408)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEE
T ss_pred             EEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEE
Confidence            9999999999988889999999999984   45999999999999999999999999999999999999999998 5899


Q ss_pred             EeCCCcEEEEeCCcccccCC----CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEE
Q 035621          143 GGDDGVIATVPIFQLVDEHT----DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLST  218 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  218 (387)
                      ++.||.|++||++.......    ...............|...|.+++|+|++  ++|++++.|+.|++||+.+++....
T Consensus       205 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~  282 (408)
T 4a11_B          205 ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG--LHLLTVGTDNRMRLWNSSNGENTLV  282 (408)
T ss_dssp             EETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCBCCC
T ss_pred             EcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC--CEEEEecCCCeEEEEECCCCcccee
Confidence            99999999999964321100    00001112223336789999999999974  8999999999999999999876544


Q ss_pred             Eec------CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621          219 VTF------PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA  292 (387)
Q Consensus       219 ~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  292 (387)
                      +..      ...+........+..+++++.++.|++||+...         .....+.+|...|++++|+|++++|++++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  353 (408)
T 4a11_B          283 NYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---------EQITMLKGHYKTVDCCVFQSNFQELYSGS  353 (408)
T ss_dssp             CCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---------CEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---------cceeeeccCCCeEEEEEEcCCCCEEEEEC
Confidence            331      122223333345567888888999999999873         22333457999999999999999999999


Q ss_pred             CCCcEEEEECCCccEEEEeec
Q 035621          293 EDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       293 ~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      .||.|++||+.+++.+.....
T Consensus       354 ~dg~i~iw~~~~~~~~~~~~~  374 (408)
T 4a11_B          354 RDCNILAWVPSLYEPVPDDDE  374 (408)
T ss_dssp             TTSCEEEEEECC---------
T ss_pred             CCCeEEEEeCCCCCccCCCCc
Confidence            999999999999988876554

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-39  Score=312.58  Aligned_cols=316  Identities=11%  Similarity=0.093  Sum_probs=229.9

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCcee-----------EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEE
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAIL-----------AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYN   70 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~   70 (387)
                      ++|+|++++|++|+.||.|++||+.+++..           ..+.+|.++|.+++|+|+.   ...+++++.|+.| +||
T Consensus       104 v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~---~~~l~~g~~dg~v-lWd  179 (902)
T 2oaj_A          104 IDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD---IGTVLISYEYVTL-TYS  179 (902)
T ss_dssp             EECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTE---EEEEEEECSSCEE-EEE
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCC---CCEEEEEeCCCcE-EEE
Confidence            679999999999999999999999988753           3457799999999999952   2344558999999 999


Q ss_pred             ccCCCcccccCCC-------------------CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE--cc---C---
Q 035621           71 LWSSTPLHNIPVP-------------------EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS--FS---A---  123 (387)
Q Consensus        71 ~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~---~---  123 (387)
                      +.+++++..+...                   ..|.+++|+|+|++|++|+.||.|++||+++++++..  +.   .   
T Consensus       180 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~  259 (902)
T 2oaj_A          180 LVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVP  259 (902)
T ss_dssp             TTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSC
T ss_pred             CCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCC
Confidence            9998877666532                   6799999999999999999999999999999987653  21   1   


Q ss_pred             ----------CCCCeEEEEEc----CCC-CEEEEEeCC-----CcEEEEeCCc-----------------------cccc
Q 035621          124 ----------HDKPVSCLKIS----PDG-SLLISGGDD-----GVIATVPIFQ-----------------------LVDE  160 (387)
Q Consensus       124 ----------~~~~v~~~~~~----~~~-~~l~~~~~d-----g~i~iwd~~~-----------------------~~~~  160 (387)
                                |..+|++++|+    |++ .++++|+.|     ..+.+|++..                       ....
T Consensus       260 ~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  339 (902)
T 2oaj_A          260 QPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL  339 (902)
T ss_dssp             CTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC
T ss_pred             CCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec
Confidence                      34579999995    443 467777665     3677887410                       0000


Q ss_pred             -CC------------CC-----CC------------------CCccce-------EeeeccCCCeEEEEE----------
Q 035621          161 -HT------------DD-----KN------------------PDDLML-------QKFVAHNDSVTAITC----------  187 (387)
Q Consensus       161 -~~------------~~-----~~------------------~~~~~~-------~~~~~~~~~i~~~~~----------  187 (387)
                       ..            ..     ..                  ..+...       ..+..|...|+++++          
T Consensus       340 ~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~  419 (902)
T 2oaj_A          340 PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLG  419 (902)
T ss_dssp             SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHH
T ss_pred             CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHH
Confidence             00            00     00                  000000       011223345555555          


Q ss_pred             ------------------------eeCCCCceEEEEeCCCcEEEEeCCCCcEE----EEE--------ecCCceeEEEeC
Q 035621          188 ------------------------CIGSFNSIIISCSMDCTCKFWRLLNGTHL----STV--------TFPCAIMGLALD  231 (387)
Q Consensus       188 ------------------------~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~--------~~~~~v~~~~~~  231 (387)
                                              +|+  +++|++|+.|++|++||+.++...    ...        .|...|.+++|+
T Consensus       420 ~~~~~~~~~~~l~G~~~~v~sv~~spd--g~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafs  497 (902)
T 2oaj_A          420 ALSAAQNKDYLLKGGVRTKRQKLPAEY--GTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFA  497 (902)
T ss_dssp             HHHTTBCCCCSCCCSBCCCCCCCCCSE--EEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEE
T ss_pred             HHhcccCCCCcccCCcCCCCccccccc--CcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEec
Confidence                                    343  589999999999999999887421    111        356789999999


Q ss_pred             CCCCeEEEEccCCcEEEEecccccccc------------------c------------------cccceeEeeccccccc
Q 035621          232 PTETDFFAAGSDGLIYKGLLKYQSRQQ------------------M------------------HKGQELVTLANRHDGV  275 (387)
Q Consensus       232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------~------------------~~~~~~~~~~~~~~~~  275 (387)
                      |++++|++|+.||.|++|++.......                  .                  ..+......+.+|.+.
T Consensus       498 pdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~  577 (902)
T 2oaj_A          498 AETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK  577 (902)
T ss_dssp             TTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS
T ss_pred             CCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc
Confidence            999999999999999999998652100                  0                  0001234455679999


Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEE--e---e-cccCCCceeEEEE
Q 035621          276 VVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMV--L---K-NELAGSISEMVIA  325 (387)
Q Consensus       276 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~---~-~~~~~~v~~~~~~  325 (387)
                      |++++|+||| +||+|+.|++|++||+++++.+..  +   . +| .+.|++++|+
T Consensus       578 V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh-~~~V~sv~Fs  631 (902)
T 2oaj_A          578 TSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQ-SACVTCIEFV  631 (902)
T ss_dssp             EEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSC-CCCEEEEEEE
T ss_pred             EEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccc-ccceEEEEEE
Confidence            9999999999 999999999999999998887652  2   1 33 4579999998

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7.4e-39  Score=299.51  Aligned_cols=291  Identities=16%  Similarity=0.209  Sum_probs=254.2

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCC----ceeEeccCCCCC-ceeEEEcC--ccceeeeccccCCCCCeEEEEEccCC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSG----AILAHFSGSRSP-RRGLTFAG--KPFIAASHISPTTGSGSVHLYNLWSS   74 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~-v~~~~~~~--~~~~~~~~~~~~~~d~~v~vw~~~~~   74 (387)
                      ++|+|+|++|++++ ++.|+|||+.++    +....+.+|... |.+++|+|  ++.++++    ++.||.|++||+.++
T Consensus        24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s----~~~dg~v~vw~~~~~   98 (615)
T 1pgu_A           24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS----GDESGKVIVWGWTFD   98 (615)
T ss_dssp             CEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEE----EETTSEEEEEEEEEE
T ss_pred             EEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEE----ecCCCEEEEEeCCCC
Confidence            68999999999998 789999999999    889999999999 99999999  8765544    889999999999754


Q ss_pred             --------CcccccC-CCCCeeeEEeccCCCEEEEecCC----CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC-EE
Q 035621           75 --------TPLHNIP-VPEPVAPLATTADGSYLFTGGLS----GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS-LL  140 (387)
Q Consensus        75 --------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l  140 (387)
                              +....+. +..+|.+++|+|++++|++++.+    +.|++||  .++.+..+.+|...|.+++|+|+++ ++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l  176 (615)
T 1pgu_A           99 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRS  176 (615)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEE
T ss_pred             cccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEE
Confidence                    4444444 67899999999999999999887    6888888  6778889999999999999999998 89


Q ss_pred             EEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC---CeEEEEEeeC-CCCceEEEEeCCCcEEEEeCCCCcEE
Q 035621          141 ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND---SVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNGTHL  216 (387)
Q Consensus       141 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~  216 (387)
                      ++++.|+.|++||+            .....+..+..|..   .|.+++|+|+ +  ++|++++.|+.|++||+++++.+
T Consensus       177 ~~~~~d~~v~vwd~------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~  242 (615)
T 1pgu_A          177 MTVGDDGSVVFYQG------------PPFKFSASDRTHHKQGSFVRDVEFSPDSG--EFVITVGSDRKISCFDGKSGEFL  242 (615)
T ss_dssp             EEEETTTEEEEEET------------TTBEEEEEECSSSCTTCCEEEEEECSTTC--CEEEEEETTCCEEEEETTTCCEE
T ss_pred             EEEeCCCcEEEEeC------------CCcceeeeecccCCCCceEEEEEECCCCC--CEEEEEeCCCeEEEEECCCCCEe
Confidence            99999999999998            56677888889999   9999999988 5  89999999999999999999999


Q ss_pred             EEE-----ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeec---ccccccEEEEEEecCCCEE
Q 035621          217 STV-----TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA---NRHDGVVVSVMMMNEGKNL  288 (387)
Q Consensus       217 ~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l  288 (387)
                      ..+     .+...|.+++|+ +++++++++.|+.|++||+.....        ...+.   ..+...+.++.|+ +++++
T Consensus       243 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~l  312 (615)
T 1pgu_A          243 KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC--------VQKWTLDKQQLGNQQVGVVAT-GNGRI  312 (615)
T ss_dssp             EECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE--------EEEEECCTTCGGGCEEEEEEE-ETTEE
T ss_pred             EEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE--------EEEEcCCCCcccCceeEEEeC-CCCeE
Confidence            998     678899999999 999999999999999999987432        22211   1235678888886 88999


Q ss_pred             EEEeCCCcEEEEECCCccEEEEeecccCCCceeEEE
Q 035621          289 VSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVI  324 (387)
Q Consensus       289 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  324 (387)
                      ++++.||.|++||+.+++++..+..|. +.|+++.|
T Consensus       313 ~~~~~~g~i~~~d~~~~~~~~~~~~~~-~~v~~~~~  347 (615)
T 1pgu_A          313 ISLSLDGTLNFYELGHDEVLKTISGHN-KGITALTV  347 (615)
T ss_dssp             EEEETTSCEEEEETTEEEEEEEECCCS-SCEEEEET
T ss_pred             EEEECCCCEEEEECCCCcEEEEEeCCC-CCEEEEEe
Confidence            999999999999999999999998764 48888876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.2e-39  Score=310.80  Aligned_cols=279  Identities=15%  Similarity=0.179  Sum_probs=242.6

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|+|++++|++|+.||.|+|||+.+++.+..+.+|..+|.+++|+|++..    +++++.||.|++||+.+++.+..+.
T Consensus        19 i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg~i~vw~~~~~~~~~~~~   94 (814)
T 3mkq_A           19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNW----IIVGSDDFRIRVFNYNTGEKVVDFE   94 (814)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTE----EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCE----EEEEeCCCeEEEEECCCCcEEEEEe
Confidence            689999999999999999999999999999999999999999999996544    4458899999999999998888776


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCccc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                       |...|.+++|+|++++|++++.||.|++||+.++ .....+.+|...|.+++|+| +++.+++++.||.|++||+.   
T Consensus        95 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~---  171 (814)
T 3mkq_A           95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG---  171 (814)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT---
T ss_pred             cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC---
Confidence             7789999999999999999999999999999887 66778889999999999999 88999999999999999993   


Q ss_pred             ccCCCCCCCCccceEeeeccC-CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCe
Q 035621          159 DEHTDDKNPDDLMLQKFVAHN-DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETD  236 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~  236 (387)
                               .......+..+. ..+.+++|+|.+++.++++++.||.|++||+.+++.+..+. +...+.+++|+|++++
T Consensus       172 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  242 (814)
T 3mkq_A          172 ---------QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI  242 (814)
T ss_dssp             ---------CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred             ---------CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence                     334444554444 89999999995556999999999999999999999988887 6789999999999999


Q ss_pred             EEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC--EEEEEeCCCcEEEEECCCcc
Q 035621          237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK--NLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       237 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~  306 (387)
                      +++++.||.|++||+.+..         .......|...+.+++|+|++.  +++++ .|+.+.+|++..+.
T Consensus       243 l~~~~~dg~v~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          243 IISGSEDGTLKIWNSSTYK---------VEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDE  304 (814)
T ss_dssp             EEEEETTSCEEEEETTTCS---------EEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCS
T ss_pred             EEEEeCCCeEEEEECCCCc---------EEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCC
Confidence            9999999999999998732         2233446788999999999987  35555 56678999977543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.5e-39  Score=292.54  Aligned_cols=287  Identities=8%  Similarity=0.124  Sum_probs=221.6

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc-----------eeEeccCCC------------CCceeEEEcCccceeeeccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA-----------ILAHFSGSR------------SPRRGLTFAGKPFIAASHIS   58 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~   58 (387)
                      ++|+|+|++||+|+.||.|+|||+.+++           ....+.+|.            .+|.+++|+|+..  ...++
T Consensus        34 v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~--~~~l~  111 (447)
T 3dw8_B           34 VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN--AAQFL  111 (447)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS--SSEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC--cceEE
Confidence            6899999999999999999999998877           577889998            8899999999541  03344


Q ss_pred             cCCCCCeEEEEEccCCCcc-----------------------------------------cccCCCCCeeeEEeccCCCE
Q 035621           59 PTTGSGSVHLYNLWSSTPL-----------------------------------------HNIPVPEPVAPLATTADGSY   97 (387)
Q Consensus        59 ~~~~d~~v~vw~~~~~~~~-----------------------------------------~~~~~~~~v~~~~~~~~~~~   97 (387)
                      +++.|+.|++||+.++...                                         ....|...|.+++|+|++++
T Consensus       112 s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  191 (447)
T 3dw8_B          112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYET  191 (447)
T ss_dssp             EEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSE
T ss_pred             EeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCE
Confidence            5889999999999764331                                         01347788999999999999


Q ss_pred             EEEecCCCcEEEEeCCC-CceeE-------EccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCC
Q 035621           98 LFTGGLSGNVYAISVPK-GDILR-------SFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPD  168 (387)
Q Consensus        98 l~~~~~dg~i~i~d~~~-~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  168 (387)
                      |++| .|+.|++||+++ ++.+.       .+..|...|++++|+|++ ++|++++.||.|++||++....        .
T Consensus       192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~--------~  262 (447)
T 3dw8_B          192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL--------C  262 (447)
T ss_dssp             EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS--------S
T ss_pred             EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc--------c
Confidence            9999 799999999984 44444       366899999999999998 9999999999999999943211        0


Q ss_pred             ccceEeeeccCC------------CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-CcEEEEEecCCc-----------
Q 035621          169 DLMLQKFVAHND------------SVTAITCCIGSFNSIIISCSMDCTCKFWRLLN-GTHLSTVTFPCA-----------  224 (387)
Q Consensus       169 ~~~~~~~~~~~~------------~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~-----------  224 (387)
                      ......+..|..            .|.+++|+|++  ++|++++. +.|++||+++ ++++..+..+..           
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~  339 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG--RYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN  339 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEEEEECTTS--SEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred             cceeeEeccCCCccccccccccCceEEEEEECCCC--CEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence            112456666665            99999999974  89999998 9999999997 888777774443           


Q ss_pred             -----eeEEEeCCCCCeEEEEccCCcEEEEecccccccccccc-----------------------ceeEeecccccccE
Q 035621          225 -----IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG-----------------------QELVTLANRHDGVV  276 (387)
Q Consensus       225 -----v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~v  276 (387)
                           +..++|+|++++|++++.||.|++||+..+........                       .........+...|
T Consensus       340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  419 (447)
T 3dw8_B          340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKI  419 (447)
T ss_dssp             SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCC
T ss_pred             cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCce
Confidence                 33499999999999999999999999987543211000                       00000011345679


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          277 VSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       277 ~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      ..++|+|++++||+++.++ +++|.-+
T Consensus       420 ~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          420 LHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             eEEEECCCCCEEEEEecce-eeeeccc
Confidence            9999999999999998775 8888644

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=9.8e-38  Score=270.40  Aligned_cols=276  Identities=18%  Similarity=0.250  Sum_probs=228.7

Q ss_pred             CCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc-----ccccC-CCCCeeeEEeccCCCEEE
Q 035621           26 SSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP-----LHNIP-VPEPVAPLATTADGSYLF   99 (387)
Q Consensus        26 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~-----~~~~~-~~~~v~~~~~~~~~~~l~   99 (387)
                      ++.++..+|++|.++|++++|+|+.   ...++|++.|++|++||+.+.+.     ...+. |...|.+++|+|++++|+
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~---~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~  102 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQF---PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFAL  102 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTC---TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CceEEEEEECCccCCEEEEEEeCCC---CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEE
Confidence            3445667899999999999999952   12345589999999999987653     22333 678999999999999999


Q ss_pred             EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC
Q 035621          100 TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN  179 (387)
Q Consensus       100 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (387)
                      +++.|+.|++|+............+...+..+.+++++++|++++.|+.+++||+..           .........+|.
T Consensus       103 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~-----------~~~~~~~~~~~~  171 (340)
T 4aow_A          103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG-----------VCKYTVQDESHS  171 (340)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-----------CEEEEECSSSCS
T ss_pred             EEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC-----------CceEEEEecccc
Confidence            999999999999999988888888889999999999999999999999999999832           223345567889


Q ss_pred             CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccc
Q 035621          180 DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQ  258 (387)
Q Consensus       180 ~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  258 (387)
                      ..+..++++++....++++++.|+.|++||+++++.+..+. +...|.+++|+|++++|++++.||.|++||++...   
T Consensus       172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~---  248 (340)
T 4aow_A          172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK---  248 (340)
T ss_dssp             SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE---
T ss_pred             CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc---
Confidence            99999999998777889999999999999999999988887 77899999999999999999999999999998732   


Q ss_pred             ccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc--------cCCCceeEEEEe
Q 035621          259 MHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE--------LAGSISEMVIAT  326 (387)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~v~~~~~~~  326 (387)
                           .+..+  .+...|.+++|+|++.+ ++++.|+.|++||++++..+..+..+        +.+.|++++|++
T Consensus       249 -----~~~~~--~~~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  316 (340)
T 4aow_A          249 -----HLYTL--DGGDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA  316 (340)
T ss_dssp             -----EEEEE--ECSSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT
T ss_pred             -----eeeee--cCCceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC
Confidence                 22222  35568999999998765 55667999999999999888777642        344677776544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-39  Score=291.60  Aligned_cols=287  Identities=9%  Similarity=0.098  Sum_probs=232.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEec-cCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccC---CC-
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHF-SGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWS---ST-   75 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~---~~-   75 (387)
                      ..|+|++..+++++      .|+ .+++.+..+ .+|.++|++++|+| ++.+++    +++.||.|++||+.+   +. 
T Consensus        33 ~~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~----s~s~dg~v~vwd~~~~~~~~~  101 (437)
T 3gre_A           33 KEFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLI----TGSDQGVIKIWNLKEIIVGEV  101 (437)
T ss_dssp             GGGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEE----EEETTSEEEEEEHHHHHTTCC
T ss_pred             hhcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEE----EecCCceEEEeECcccccCcc
Confidence            35889998888776      388 468888888 89999999999999 765444    489999999999976   43 


Q ss_pred             --cccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC---CCceeEEcc----------C--CCCCeEEEE--EcCC
Q 035621           76 --PLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP---KGDILRSFS----------A--HDKPVSCLK--ISPD  136 (387)
Q Consensus        76 --~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~----------~--~~~~v~~~~--~~~~  136 (387)
                        ....+.|...|.+++|+|++++|++++.||.|++||++   +++....+.          .  +...+.++.  ++++
T Consensus       102 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  181 (437)
T 3gre_A          102 YSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE  181 (437)
T ss_dssp             CSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred             cceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence              34444588999999999999999999999999999994   555444332          1  456677777  5678


Q ss_pred             CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec--cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc
Q 035621          137 GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA--HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT  214 (387)
Q Consensus       137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  214 (387)
                      ++++++++.|+.|++||+            .....+..+..  |...|.+++|+|++  .+|++|+.||.|++||+++++
T Consensus       182 ~~~l~~~~~d~~i~iwd~------------~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~  247 (437)
T 3gre_A          182 KSLLVALTNLSRVIIFDI------------RTLERLQIIENSPRHGAVSSICIDEEC--CVLILGTTRGIIDIWDIRFNV  247 (437)
T ss_dssp             CEEEEEEETTSEEEEEET------------TTCCEEEEEECCGGGCCEEEEEECTTS--CEEEEEETTSCEEEEETTTTE
T ss_pred             CCEEEEEeCCCeEEEEeC------------CCCeeeEEEccCCCCCceEEEEECCCC--CEEEEEcCCCeEEEEEcCCcc
Confidence            999999999999999999            56667788877  89999999999884  999999999999999999999


Q ss_pred             EEEEEe--cCCceeEEEeC----CCCCeEEEEccCCcEEEEeccccccccccccce--eE--e-----------eccc--
Q 035621          215 HLSTVT--FPCAIMGLALD----PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQE--LV--T-----------LANR--  271 (387)
Q Consensus       215 ~~~~~~--~~~~v~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~--~-----------~~~~--  271 (387)
                      ++..+.  +...|.+++|+    |++.+|++++.||.|++||+..+..........  +.  .           .+.+  
T Consensus       248 ~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  327 (437)
T 3gre_A          248 LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIR  327 (437)
T ss_dssp             EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCC
T ss_pred             EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccc
Confidence            998875  56789999555    567899999999999999998754322211100  00  0           0122  


Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       272 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      |...|++++|+ ++++|++|+.||.|++||+.+++.+..+.++
T Consensus       328 ~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  369 (437)
T 3gre_A          328 SLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISP  369 (437)
T ss_dssp             SGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred             cCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence            88889999999 7799999999999999999999999988876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.4e-39  Score=325.62  Aligned_cols=298  Identities=18%  Similarity=0.248  Sum_probs=256.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc----
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL----   77 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~----   77 (387)
                      ++|+|+++++++++.||.|++||+.++..+..+.+|...|.+++|+|++..    +++++.|+.|++|++.+....    
T Consensus       846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~----l~s~s~dg~v~vw~~~~~~~~~~~~  921 (1249)
T 3sfz_A          846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS----FLTASDDQTIRVWETKKVCKNSAIV  921 (1249)
T ss_dssp             EEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE----EEEEETTSCEEEEEHHHHHSCCSSS
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCE----EEEEeCCCeEEEEEccccceeeeec
Confidence            579999999999999999999999999999999999999999999996544    445899999999997532110    


Q ss_pred             ----------------------------------cccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC
Q 035621           78 ----------------------------------HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA  123 (387)
Q Consensus        78 ----------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  123 (387)
                                                        ........+.+++|+|+++++++|+.+|.|++||+.+++....+.+
T Consensus       922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~ 1001 (1249)
T 3sfz_A          922 LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG 1001 (1249)
T ss_dssp             EEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC
T ss_pred             ccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc
Confidence                                              0011345789999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621          124 HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC  203 (387)
Q Consensus       124 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~  203 (387)
                      |...|++++|+|+++++++++.||.|++||+.            ... ......|...+.++.++++   ..+++++.|+
T Consensus      1002 h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~------------~~~-~~~~~~~~~~v~~~~~~~~---~~l~~~~~dg 1065 (1249)
T 3sfz_A         1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ------------TGD-YVFLQAHQETVKDFRLLQD---SRLLSWSFDG 1065 (1249)
T ss_dssp             CSSCCCCEEECSSSSCEEEECSSSBEEEEETT------------TTE-EECCBCCSSCEEEEEECSS---SEEEEEESSS
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCEEEEEECC------------CCc-eEEEecCCCcEEEEEEcCC---CcEEEEECCC
Confidence            99999999999999999999999999999993            332 2345689999999999986   5789999999


Q ss_pred             cEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEe
Q 035621          204 TCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMM  282 (387)
Q Consensus       204 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  282 (387)
                      .|++||+.+++....+. +...|.+++|+|+++++++++.||.|++||+.....         ...+.+|...|++++|+
T Consensus      1066 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~---------~~~l~~h~~~v~~~~~s 1136 (1249)
T 3sfz_A         1066 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP---------LHELKGHNGCVRCSAFS 1136 (1249)
T ss_dssp             EEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC---------SBCCCCCSSCEEEEEEC
T ss_pred             cEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce---------eeeeccCCCcEEEEEEC
Confidence            99999999999988887 778899999999999999999999999999987432         22345799999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCccEEEEee--------cccCCCceeEEEEecC
Q 035621          283 NEGKNLVSAAEDGSVYIWEIEKRQVVMVLK--------NELAGSISEMVIATGI  328 (387)
Q Consensus       283 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~  328 (387)
                      |++++|++|+.||.|++||+.+++.+..+.        ..+.+.|++++|++..
T Consensus      1137 ~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg 1190 (1249)
T 3sfz_A         1137 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDS 1190 (1249)
T ss_dssp             SSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTS
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCC
Confidence            999999999999999999999999887661        2345689999887654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.5e-38  Score=280.15  Aligned_cols=275  Identities=14%  Similarity=0.147  Sum_probs=227.8

Q ss_pred             eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC------ccccc-CCCCCeeeEEeccC----C---
Q 035621           30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST------PLHNI-PVPEPVAPLATTAD----G---   95 (387)
Q Consensus        30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~------~~~~~-~~~~~v~~~~~~~~----~---   95 (387)
                      ....+.+|..+|++++|+|      ..+++++.||.|++|++.+++      ....+ .|...|.+++|+|+    +   
T Consensus         8 ~~~~~~~h~~~i~~~~~~~------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~   81 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL   81 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred             hhhhhhhhhcCeEEEEecC------CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccc
Confidence            3556789999999999998      234458899999999999887      34444 37789999999999    9   


Q ss_pred             CEEEEecCCCcEEEEeCCCCce-----eEEccCC-----CCCeEEEEEc----CCCCE-EEEEeCCCcEEEEeCCccccc
Q 035621           96 SYLFTGGLSGNVYAISVPKGDI-----LRSFSAH-----DKPVSCLKIS----PDGSL-LISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        96 ~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~~~~~  160 (387)
                      ++|++++.||.|++||+.+++.     ...+..|     ...|.+++|+    |++++ |++++.||.|++||+......
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  161 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  161 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence            9999999999999999998887     8888888     5899999999    99999 999999999999999431000


Q ss_pred             CCCCCCCCccceE-----ee-------eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec-------
Q 035621          161 HTDDKNPDDLMLQ-----KF-------VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF-------  221 (387)
Q Consensus       161 ~~~~~~~~~~~~~-----~~-------~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------  221 (387)
                            .....+.     .+       ..|...|.+++|+|+  + ++++++.|+.|++||+++++.+..+..       
T Consensus       162 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~  232 (397)
T 1sq9_A          162 ------SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN  232 (397)
T ss_dssp             ------HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--S-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred             ------cccceeeccCcceeeeeeccccCCCCCceEEEECCC--c-eEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence                  0022222     45       448899999999987  4 999999999999999999999988875       


Q ss_pred             CCceeEEEeCCCCCeEEEEccC---CcEEEEeccccccccccccceeEeeccc-------------ccccEEEEEEecCC
Q 035621          222 PCAIMGLALDPTETDFFAAGSD---GLIYKGLLKYQSRQQMHKGQELVTLANR-------------HDGVVVSVMMMNEG  285 (387)
Q Consensus       222 ~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~  285 (387)
                      ...+.+++|+|++++|++++.|   |.|++||+.....        + ..+..             |...|.+++|+|++
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  303 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--------I-GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG  303 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--------E-EEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc--------c-ceeccCcccccccccccccCCcEEEEEECCCC
Confidence            7899999999999999999999   9999999987422        2 22234             89999999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCccEEEEee------cc--------------cCCCceeEEEEecC
Q 035621          286 KNLVSAAEDGSVYIWEIEKRQVVMVLK------NE--------------LAGSISEMVIATGI  328 (387)
Q Consensus       286 ~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~--------------~~~~v~~~~~~~~~  328 (387)
                      ++|++++.||.|++||+.+++++..+.      .|              +...|+++.|++..
T Consensus       304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            999999999999999999999999998      54              15588888887653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.1e-38  Score=279.27  Aligned_cols=283  Identities=14%  Similarity=0.149  Sum_probs=229.0

Q ss_pred             EeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC---CCCCeeeEEecc-CCCEE
Q 035621           23 YNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP---VPEPVAPLATTA-DGSYL   98 (387)
Q Consensus        23 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~---~~~~v~~~~~~~-~~~~l   98 (387)
                      |+..+.+....+.+|...|.+++|+|++   ...+++++.||.|++||+.+++....+.   |...|.+++|+| ++++|
T Consensus        58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l  134 (383)
T 3ei3_B           58 RSLKSYKLHRTASPFDRRVTSLEWHPTH---PTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQL  134 (383)
T ss_dssp             HHHTTCEEEEEECCCSSCEEEEEECSSC---TTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEE
T ss_pred             ccccccceEEeccCCCCCEEEEEECCCC---CCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEE
Confidence            3445566778889999999999999964   0234448999999999999888776654   778999999999 78999


Q ss_pred             EEecCCCcEEEEeCCCCceeEEccC---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee
Q 035621           99 FTGGLSGNVYAISVPKGDILRSFSA---HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF  175 (387)
Q Consensus        99 ~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  175 (387)
                      ++++.|+.|++||+++ +.+..+..   |...|.+++|+|++++|++++.|+.|++||+             ....+..+
T Consensus       135 ~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-------------~~~~~~~~  200 (383)
T 3ei3_B          135 FVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-------------DGHEIFKE  200 (383)
T ss_dssp             EEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-------------TSCEEEEE
T ss_pred             EEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-------------CCCEEEEe
Confidence            9999999999999985 55555544   3478999999999999999999999999998             34567888


Q ss_pred             eccCCCeEEEEEeeCCCCc-eEEEEeCCCcEEEEeCCC----CcEEEEEecCCceeEEEeCC-CCCeEEEEccCCcEEEE
Q 035621          176 VAHNDSVTAITCCIGSFNS-IIISCSMDCTCKFWRLLN----GTHLSTVTFPCAIMGLALDP-TETDFFAAGSDGLIYKG  249 (387)
Q Consensus       176 ~~~~~~i~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~  249 (387)
                      ..|...|.+++|+|++  . +|++++.|+.|++||+++    +..+..+.+...|.+++|+| ++++|++++.|+.|++|
T Consensus       201 ~~h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iw  278 (383)
T 3ei3_B          201 KLHKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVY  278 (383)
T ss_dssp             ECSSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEE
T ss_pred             ccCCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEE
Confidence            8999999999999985  5 999999999999999998    67888888999999999999 99999999999999999


Q ss_pred             eccccccccccccceeE--------eecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc-CCCce
Q 035621          250 LLKYQSRQQMHKGQELV--------TLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL-AGSIS  320 (387)
Q Consensus       250 d~~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~  320 (387)
                      |+++.............        .........+..++|+|++++  +++.||.|++||+.+++++..+..+. .+.++
T Consensus       279 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~  356 (383)
T 3ei3_B          279 SSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIIS  356 (383)
T ss_dssp             ETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCC
T ss_pred             ECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEE
Confidence            99875443221110000        000011245566778888877  88899999999999999999998753 55676


Q ss_pred             eEEEEe
Q 035621          321 EMVIAT  326 (387)
Q Consensus       321 ~~~~~~  326 (387)
                      .++|++
T Consensus       357 ~~~~s~  362 (383)
T 3ei3_B          357 LNKFSP  362 (383)
T ss_dssp             EEEECT
T ss_pred             EEEEec
Confidence            667765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.1e-39  Score=275.87  Aligned_cols=253  Identities=15%  Similarity=0.167  Sum_probs=199.9

Q ss_pred             eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc--ccccC-CCCCeeeEEecc--CCCEEEEecCCCcE
Q 035621           33 HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP--LHNIP-VPEPVAPLATTA--DGSYLFTGGLSGNV  107 (387)
Q Consensus        33 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~--~~~~~-~~~~v~~~~~~~--~~~~l~~~~~dg~i  107 (387)
                      .+.+|.++|++++|+|++.    .+++++.|++|++||+.+++.  +..+. |..+|.+++|++  ++++|++|+.|++|
T Consensus         8 ~~~~H~~~V~~v~~s~~g~----~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v   83 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGT----RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV   83 (316)
T ss_dssp             ------CCEEEEEECGGGC----EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred             ecccccCeEEEeeEcCCCC----EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence            4578999999999999654    455599999999999987743  34443 788999999986  48999999999999


Q ss_pred             EEEeCCCC--ceeEEccCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeE
Q 035621          108 YAISVPKG--DILRSFSAHDKPVSCLKISPD--GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVT  183 (387)
Q Consensus       108 ~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  183 (387)
                      ++||++++  +....+.+|...|++++|+|+  +.+|++++.|+.|++||+...         ........+.+|...+.
T Consensus        84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~---------~~~~~~~~~~~h~~~v~  154 (316)
T 3bg1_A           84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE---------GQWEVKKINNAHTIGCN  154 (316)
T ss_dssp             EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS---------SCEEECCBTTSSSSCBC
T ss_pred             EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC---------CCcceeeeeccccCCcc
Confidence            99999887  456678899999999999997  789999999999999998421         01112344567889999


Q ss_pred             EEEEeeCCC---------------CceEEEEeCCCcEEEEeCCCC---cEEEEEe-cCCceeEEEeCCCC----CeEEEE
Q 035621          184 AITCCIGSF---------------NSIIISCSMDCTCKFWRLLNG---THLSTVT-FPCAIMGLALDPTE----TDFFAA  240 (387)
Q Consensus       184 ~~~~~~~~~---------------~~~l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~~v~~~~~~~~~----~~l~~~  240 (387)
                      +++|+|+..               +.+|++|+.|++|++||++..   +++..+. |...|.+++|+|++    .+|+++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~  234 (316)
T 3bg1_A          155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC  234 (316)
T ss_dssp             CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred             eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence            999988631               368999999999999999765   3445554 67889999999987    789999


Q ss_pred             ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      +.|+.|++|++.......     .....+..|...|.+++|+|++++|++++.||.|++|+..
T Consensus       235 s~D~~v~iw~~~~~~~~~-----~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          235 SQDGRVFIWTCDDASSNT-----WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             ETTCEEEEEECSSTTCCC-----CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             cCCCeEEEEEccCccccc-----hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999999999987632110     0111224688999999999999999999999999999976

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.1e-38  Score=265.83  Aligned_cols=242  Identities=14%  Similarity=0.194  Sum_probs=199.2

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCC--CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--cc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSS--GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PL   77 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~   77 (387)
                      ++|+|+|++||+|+.|++|+|||+.+  .+.+.++.+|.++|.+++|++..  ....+++++.|++|++||+.+++  .+
T Consensus        15 ~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~--~g~~l~s~s~D~~v~iWd~~~~~~~~~   92 (297)
T 2pm7_B           15 AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYDGKVMIWKEENGRWSQI   92 (297)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG--GCSEEEEEETTTEEEEEEBSSSCBCCC
T ss_pred             EEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC--cCCEEEEEcCCCEEEEEEcCCCceEEE
Confidence            57999999999999999999999974  46788999999999999998631  12345569999999999998774  33


Q ss_pred             cccC-CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCCce--eEEccCCCCCeEEEEEcCC-------------CCE
Q 035621           78 HNIP-VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKGDI--LRSFSAHDKPVSCLKISPD-------------GSL  139 (387)
Q Consensus        78 ~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~-------------~~~  139 (387)
                      ..+. |...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+.+|...|.+++|+|+             +++
T Consensus        93 ~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~  172 (297)
T 2pm7_B           93 AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK  172 (297)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCE
T ss_pred             EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcce
Confidence            3333 6788999999997  88999999999999999987632  4567789999999999997             579


Q ss_pred             EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC-CCceEEEEeCCCcEEEEeCCCCc---E
Q 035621          140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS-FNSIIISCSMDCTCKFWRLLNGT---H  215 (387)
Q Consensus       140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~---~  215 (387)
                      |++|+.|+.|++||++...        ........+.+|...|.+++|+|++ .+.+|++++.|++|++||+++..   .
T Consensus       173 l~sgs~D~~v~lwd~~~~~--------~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~  244 (297)
T 2pm7_B          173 FVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK  244 (297)
T ss_dssp             EEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE
T ss_pred             EEEEcCCCcEEEEEEcCCC--------ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccc
Confidence            9999999999999983210        1112456788999999999999974 24799999999999999998753   1


Q ss_pred             EEEE---ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621          216 LSTV---TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       216 ~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                      ...+   .+...+.+++|+|++++|++++.|+.|++|+...
T Consensus       245 ~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             eeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            2222   2567899999999999999999999999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.3e-37  Score=293.01  Aligned_cols=263  Identities=20%  Similarity=0.274  Sum_probs=218.6

Q ss_pred             eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc-----ccc-CCCCCeeeEEeccCCCEEEEecC
Q 035621           30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL-----HNI-PVPEPVAPLATTADGSYLFTGGL  103 (387)
Q Consensus        30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~-----~~~-~~~~~v~~~~~~~~~~~l~~~~~  103 (387)
                      ....+++|.+.|++++|+++.   ...+++++.|++|++|++.+....     ..+ .|...|.+++|+|++++|++|+.
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~---~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~  450 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDN---ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW  450 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTC---CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             hhhhcccCCceeEEEEecCCC---CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC
Confidence            345688999999999999842   234556999999999999765322     222 37789999999999999999999


Q ss_pred             CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeE
Q 035621          104 SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVT  183 (387)
Q Consensus       104 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  183 (387)
                      ||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+....         .........+|...|.
T Consensus       451 Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~---------~~~~~~~~~~h~~~v~  521 (694)
T 3dm0_A          451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC---------KYTISEGGEGHRDWVS  521 (694)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE---------EEEECSSTTSCSSCEE
T ss_pred             CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc---------ceeeccCCCCCCCcEE
Confidence            9999999999999999999999999999999999999999999999999983210         0001111246888999


Q ss_pred             EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccc
Q 035621          184 AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG  262 (387)
Q Consensus       184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  262 (387)
                      +++|+|+.....+++++.|++|++||+++++....+. |...|.+++|+|++++|++++.||.|++||+.++.       
T Consensus       522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~-------  594 (694)
T 3dm0_A          522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK-------  594 (694)
T ss_dssp             EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE-------
T ss_pred             EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-------
Confidence            9999998655789999999999999999999888887 77899999999999999999999999999998743       


Q ss_pred             ceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc
Q 035621          263 QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL  315 (387)
Q Consensus       263 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  315 (387)
                       .+..+  .+...|.+++|+|++.+|++++ |+.|++||+.+++++..+..+.
T Consensus       595 -~~~~~--~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~  643 (694)
T 3dm0_A          595 -KLYSL--EANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDL  643 (694)
T ss_dssp             -EEECC--BCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCC
T ss_pred             -eEEEe--cCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccc
Confidence             22222  3456799999999998887775 5669999999999998887553

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.4e-38  Score=280.73  Aligned_cols=281  Identities=12%  Similarity=0.132  Sum_probs=227.9

Q ss_pred             ccccCCCcE-EEeeCCCCcEEEEeCCCC----ceeEeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCC-
Q 035621            2 LHHLPCNEV-ILTSSPEGPITAYNPSSG----AILAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSS-   74 (387)
Q Consensus         2 l~~s~~~~~-l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~-   74 (387)
                      ++++|+... +++++.||.|+||++...    ..+..+.+|..+|.+++|+| +..+++    +++.||.|++||+.++ 
T Consensus        40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~----s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIA----SGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEE----EEETTSEEEEEECCTTC
T ss_pred             EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEE----EEeCCCeEEEEEccCCC
Confidence            456777654 445789999999998654    23556788999999999999 655444    4899999999999887 


Q ss_pred             ------CcccccC-CCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEEc--cCCCCCeEEEEEcCCCCEEEEEe
Q 035621           75 ------TPLHNIP-VPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRSF--SAHDKPVSCLKISPDGSLLISGG  144 (387)
Q Consensus        75 ------~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~  144 (387)
                            +++..+. |...|.+++|+|++ ++|++++.||.|++||+++++.+..+  ..|...|.+++|+|++++|++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence                  3444444 77899999999998 69999999999999999999999998  78999999999999999999999


Q ss_pred             CCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCC-eEEEEEeeCCCCceEEEE---eCCCcEEEEeCCCCcE---E
Q 035621          145 DDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDS-VTAITCCIGSFNSIIISC---SMDCTCKFWRLLNGTH---L  216 (387)
Q Consensus       145 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~---~  216 (387)
                      .||.|++||+            .....+..+ ..|.+. +.++.|+|++  .+|++|   +.|+.|++||+++++.   .
T Consensus       196 ~d~~i~iwd~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~g~~~~~d~~i~iwd~~~~~~~~~~  261 (402)
T 2aq5_A          196 RDKRVRVIEP------------RKGTVVAEKDRPHEGTRPVHAVFVSEG--KILTTGFSRMSERQVALWDTKHLEEPLSL  261 (402)
T ss_dssp             TTSEEEEEET------------TTTEEEEEEECSSCSSSCCEEEECSTT--EEEEEEECTTCCEEEEEEETTBCSSCSEE
T ss_pred             cCCcEEEEeC------------CCCceeeeeccCCCCCcceEEEEcCCC--cEEEEeccCCCCceEEEEcCccccCCceE
Confidence            9999999999            455666777 678776 8999999874  888888   7899999999998764   3


Q ss_pred             EEEecCCceeEEEeCCCCCeEEE-EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621          217 STVTFPCAIMGLALDPTETDFFA-AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG  295 (387)
Q Consensus       217 ~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  295 (387)
                      ..+.+...+.+++|+|+++++++ ++.||.|++|++......    ...+.. . .|...|.+++|+|++.++++  .++
T Consensus       262 ~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~----~~~l~~-~-~~~~~v~~~~~sp~~~~~~s--~~~  333 (402)
T 2aq5_A          262 QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF----LHYLSM-F-SSKESQRGMGYMPKRGLEVN--KCE  333 (402)
T ss_dssp             EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC----EEEEEE-E-CCSSCCSEEEECCGGGSCGG--GTE
T ss_pred             EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc----eEeecc-c-ccCCcccceEEeccccccee--cce
Confidence            33346788999999999999975 557999999999874310    001111 1 25689999999999998875  466


Q ss_pred             cEEEEECCCccEE
Q 035621          296 SVYIWEIEKRQVV  308 (387)
Q Consensus       296 ~i~iwd~~~~~~~  308 (387)
                      .+++|++.++++.
T Consensus       334 ~~~~~~l~~~~~~  346 (402)
T 2aq5_A          334 IARFYKLHERKCE  346 (402)
T ss_dssp             EEEEEEEETTEEE
T ss_pred             eEEEEEcCCCcEE
Confidence            9999999987653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.7e-38  Score=272.11  Aligned_cols=241  Identities=17%  Similarity=0.153  Sum_probs=198.1

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--cc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PL   77 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~   77 (387)
                      ++|+|+|++||+|+.|++|+|||+.++.  .+..+.+|..+|.+++|++..  ....+++++.|++|++||+++++  ..
T Consensus        19 v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~--~~~~l~s~s~D~~v~iWd~~~~~~~~~   96 (316)
T 3bg1_A           19 AQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM--YGNILASCSYDRKVIIWREENGTWEKS   96 (316)
T ss_dssp             EEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG--GSSCEEEEETTSCEEEECCSSSCCCEE
T ss_pred             eeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC--CCCEEEEEECCCEEEEEECCCCcceEE
Confidence            5799999999999999999999998774  467889999999999997521  12345568999999999998874  33


Q ss_pred             cccC-CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCCce---eEEccCCCCCeEEEEEcCC---------------
Q 035621           78 HNIP-VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKGDI---LRSFSAHDKPVSCLKISPD---------------  136 (387)
Q Consensus        78 ~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~---------------  136 (387)
                      ..+. |...|.+++|+|+  +.+|++|+.|+.|++||++.+..   ...+.+|...|.+++|+|+               
T Consensus        97 ~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  176 (316)
T 3bg1_A           97 HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKP  176 (316)
T ss_dssp             EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCC
T ss_pred             EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCc
Confidence            3333 7789999999997  78999999999999999987632   3456789999999999997               


Q ss_pred             --CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC--CCceEEEEeCCCcEEEEeCCC
Q 035621          137 --GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS--FNSIIISCSMDCTCKFWRLLN  212 (387)
Q Consensus       137 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~  212 (387)
                        +++|++|+.|+.|++||+...         ........+.+|...|.+++|+|+.  ++.+|++++.|++|++||+.+
T Consensus       177 ~~~~~l~sgs~D~~v~lWd~~~~---------~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          177 NYIKRFASGGCDNLIKLWKEEED---------GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CCCCBEECCBTTSBCCEEEECTT---------SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cccceEEEecCCCeEEEEEeCCC---------CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence              468999999999999998321         1123566788999999999999974  237899999999999999876


Q ss_pred             Cc----EEEE-EecCCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621          213 GT----HLST-VTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       213 ~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                      ..    .... ..+...|.+++|+|++++|++++.|+.|++|+...
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            31    1122 23678999999999999999999999999999764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.4e-37  Score=269.79  Aligned_cols=270  Identities=14%  Similarity=0.106  Sum_probs=226.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc---eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc-cCCCcc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA---ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL-WSSTPL   77 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~-~~~~~~   77 (387)
                      ++|+|++++|++|+.||.|++||+.+++   ....+.+|..+|.+++|+|++..   .+++++.||.|++||+ .+++..
T Consensus        17 ~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~   93 (342)
T 1yfq_A           17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL---QIYVGTVQGEILKVDLIGSPSFQ   93 (342)
T ss_dssp             EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE---EEEEEETTSCEEEECSSSSSSEE
T ss_pred             EEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc---EEEEEcCCCeEEEEEeccCCceE
Confidence            5799999999999999999999998877   34555689999999999996440   3445889999999999 888775


Q ss_pred             cccC--CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC---------CceeEEccCCCCCeEEEEEcCCCCEEEEEeCC
Q 035621           78 HNIP--VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK---------GDILRSFSAHDKPVSCLKISPDGSLLISGGDD  146 (387)
Q Consensus        78 ~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  146 (387)
                      ....  |...|.+++|+| ++++++++.|+.|++||+++         ++++..+. |...|.+++|+|++  +++++.|
T Consensus        94 ~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d  169 (342)
T 1yfq_A           94 ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNN  169 (342)
T ss_dssp             ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEEST
T ss_pred             eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCC
Confidence            5556  888999999999 99999999999999999987         77777776 88999999999887  9999999


Q ss_pred             CcEEEEeCCc-ccccCCCCCCCCccceEeeeccCCCeEEEEEee-CCCCceEEEEeCCCcEEEEeCCCC------cEEEE
Q 035621          147 GVIATVPIFQ-LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI-GSFNSIIISCSMDCTCKFWRLLNG------THLST  218 (387)
Q Consensus       147 g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~  218 (387)
                      +.|++||++. .          ..........|...+.+++|+| ++  +++++++.||.|++|++...      +....
T Consensus       170 ~~i~i~d~~~~~----------~~~~~~~~~~~~~~i~~i~~~~~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          170 SQVQWFRLPLCE----------DDNGTIEESGLKYQIRDVALLPKEQ--EGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             TEEEEEESSCCT----------TCCCEEEECSCSSCEEEEEECSGGG--CEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             CeEEEEECCccc----------cccceeeecCCCCceeEEEECCCCC--CEEEEEecCCcEEEEEEcCCCccccccccee
Confidence            9999999943 1          1123334557888999999998 74  89999999999999999887      66777


Q ss_pred             Ee-cCC---------ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccc-cccEEEEEEecCCCE
Q 035621          219 VT-FPC---------AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH-DGVVVSVMMMNEGKN  287 (387)
Q Consensus       219 ~~-~~~---------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~  287 (387)
                      +. +..         .|.+++|+|++++|++++.||.|++||+.+.        .. ...+..| ...|.+++  |++++
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~-~~~~~~~h~~~v~~~~--~~~~~  306 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--------KK-IKNFAKFNEDSVVKIA--CSDNI  306 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT--------EE-EEECCCCSSSEEEEEE--ECSSE
T ss_pred             eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH--------hH-hhhhhcccCCCceEec--CCCCe
Confidence            76 333         8999999999999999999999999999873        22 2334466 99999999  99999


Q ss_pred             EEEEeCCCc-EEEEE
Q 035621          288 LVSAAEDGS-VYIWE  301 (387)
Q Consensus       288 l~s~~~dg~-i~iwd  301 (387)
                      |++++.||. .+.|.
T Consensus       307 l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          307 LCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEEECTHHHHCSS
T ss_pred             EEEEecCCccccccc
Confidence            999999998 55544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.2e-37  Score=275.25  Aligned_cols=263  Identities=18%  Similarity=0.294  Sum_probs=232.7

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCC
Q 035621            7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEP   85 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~   85 (387)
                      ++++|++|+.||.|++||+.+++.+..+.+|...|.++.++++.      +++++.||.|++||+.+++.+..+. +...
T Consensus       168 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~------l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~  241 (445)
T 2ovr_B          168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR------VVSGSRDATLRVWDIETGQCLHVLMGHVAA  241 (445)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTE------EEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred             cCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCE------EEEEeCCCEEEEEECCCCcEEEEEcCCccc
Confidence            46799999999999999999999999999999999999997643      4457899999999999998887765 6788


Q ss_pred             eeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCC
Q 035621           86 VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDK  165 (387)
Q Consensus        86 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  165 (387)
                      +.+++|  +++++++|+.||.|++||+++++.+..+.+|...|.+++|  ++.++++++.||.|++||+           
T Consensus       242 v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~-----------  306 (445)
T 2ovr_B          242 VRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV-----------  306 (445)
T ss_dssp             EEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEET-----------
T ss_pred             EEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEEC-----------
Confidence            999999  7889999999999999999999999999999999999999  7889999999999999999           


Q ss_pred             CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceeEEEeCCCCCeEEEEc
Q 035621          166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~  241 (387)
                       .....+..+.+|...+.++.+.    ++++++++.||.|++||+++++.+..+.    +...|.+++|+  ++++++++
T Consensus       307 -~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~  379 (445)
T 2ovr_B          307 -ETGNCIHTLTGHQSLTSGMELK----DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSS  379 (445)
T ss_dssp             -TTCCEEEEECCCCSCEEEEEEE----TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEE
T ss_pred             -CCCCEEEEEcCCcccEEEEEEe----CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEe
Confidence             5667788889999999988764    3699999999999999999999999887    56789999996  57999999


Q ss_pred             cCCcEEEEeccccccccccccceeEee----cccccccEEEEEEecCCCEEEEEeCCCc----EEEEECCCc
Q 035621          242 SDGLIYKGLLKYQSRQQMHKGQELVTL----ANRHDGVVVSVMMMNEGKNLVSAAEDGS----VYIWEIEKR  305 (387)
Q Consensus       242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~s~~~dg~----i~iwd~~~~  305 (387)
                      .||.|++||+.++..        +..+    ...|.+.|++++|+|++.++++|+.||+    |.+||++..
T Consensus       380 ~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          380 DDGTVKLWDLKTGEF--------IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             TTSEEEEEETTTCCE--------EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCCeEEEEECCCCce--------eeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            999999999987432        2222    1468889999999999999999999998    999998753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-37  Score=270.96  Aligned_cols=266  Identities=13%  Similarity=0.166  Sum_probs=216.0

Q ss_pred             CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc--CCCcccccC-CCCCeeeEEeccC--CCEEEEec
Q 035621           28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW--SSTPLHNIP-VPEPVAPLATTAD--GSYLFTGG  102 (387)
Q Consensus        28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~--~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~  102 (387)
                      |+.+..+.+|..+|++++|+|++.+    +++++.||.|++||+.  +++....+. |...|.+++|+++  +++|++++
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~----l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~   76 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKR----LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS   76 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSE----EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             CCccEEecCCcccEEEEEEcCCCCE----EEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec
Confidence            3556778899999999999996544    4458899999999998  445555554 7789999999987  99999999


Q ss_pred             CCCcEEEEeCCCCc--eeEEccCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc
Q 035621          103 LSGNVYAISVPKGD--ILRSFSAHDKPVSCLKISPD--GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH  178 (387)
Q Consensus       103 ~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  178 (387)
                      .||.|++||+.+++  .+..+..|...|.+++|+|+  ++++++++.|+.|++||+..          ........+..|
T Consensus        77 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~  146 (379)
T 3jrp_A           77 YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE----------NGTTSPIIIDAH  146 (379)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT----------TSCCCEEEEECC
T ss_pred             cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC----------CCceeeEEecCC
Confidence            99999999999887  67778889999999999999  99999999999999999943          122345567789


Q ss_pred             CCCeEEEEEeeCC-----------CCceEEEEeCCCcEEEEeCCCCcE----EEEEe-cCCceeEEEeCCC---CCeEEE
Q 035621          179 NDSVTAITCCIGS-----------FNSIIISCSMDCTCKFWRLLNGTH----LSTVT-FPCAIMGLALDPT---ETDFFA  239 (387)
Q Consensus       179 ~~~i~~~~~~~~~-----------~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~-~~~~v~~~~~~~~---~~~l~~  239 (387)
                      ...|.+++|+|..           ++.++++++.|+.|++||++++..    ...+. |...|.+++|+|+   +++|++
T Consensus       147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s  226 (379)
T 3jrp_A          147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS  226 (379)
T ss_dssp             TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred             CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence            9999999999941           258999999999999999987653    33444 6788999999999   899999


Q ss_pred             EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEe
Q 035621          240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVL  311 (387)
Q Consensus       240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (387)
                      ++.||.|++||+.......    .........|...|++++|+|++++|++++.||.|++|++..+.....+
T Consensus       227 ~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~  294 (379)
T 3jrp_A          227 VSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA  294 (379)
T ss_dssp             EETTSCEEEEEESSTTSCC----EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEEE
T ss_pred             EeCCCEEEEEeCCCCCccc----eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCccccc
Confidence            9999999999998743110    1111122358889999999999999999999999999999865544333

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.5e-37  Score=265.96  Aligned_cols=273  Identities=13%  Similarity=0.154  Sum_probs=221.7

Q ss_pred             EeccCCCCCceeEEEcCcc-ceeeeccccCCC---CCeEEEEEccCCCccc--ccCCCCCeeeEEeccC---CCEEEEec
Q 035621           32 AHFSGSRSPRRGLTFAGKP-FIAASHISPTTG---SGSVHLYNLWSSTPLH--NIPVPEPVAPLATTAD---GSYLFTGG  102 (387)
Q Consensus        32 ~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~---d~~v~vw~~~~~~~~~--~~~~~~~v~~~~~~~~---~~~l~~~~  102 (387)
                      ..+.+|..+|.+++|+|+. .+.    ++++.   |+.|++||+.+++...  ...+..+|.+++|+|+   +++|++|+
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~----~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~   87 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFV----TMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD   87 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEE----EEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred             hhccCCCCceEEEEEcCCCceEE----EecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec
Confidence            3457799999999999965 332    23555   9999999999887643  3457889999999998   69999999


Q ss_pred             CCCcEEEEeCCCCc-eeEEccCCCCCeEEEE------EcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCcc-ceEe
Q 035621          103 LSGNVYAISVPKGD-ILRSFSAHDKPVSCLK------ISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDL-MLQK  174 (387)
Q Consensus       103 ~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~  174 (387)
                      .||.|++||+.+++ .+..+.+|...|.++.      |+|++++|++++.||.|++||+.            ... ....
T Consensus        88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~------------~~~~~~~~  155 (357)
T 3i2n_A           88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR------------QKDDPVAN  155 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT------------SCSSCSEE
T ss_pred             CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC------------CCCCccee
Confidence            99999999999988 8888999999999995      47899999999999999999994            222 4555


Q ss_pred             eeccCC----CeEEEEE----eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCC---CCCeEEEEccC
Q 035621          175 FVAHND----SVTAITC----CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDP---TETDFFAAGSD  243 (387)
Q Consensus       175 ~~~~~~----~i~~~~~----~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d  243 (387)
                      +..|.+    .+.++++    +|+  ++++++++.|+.|++||+++++......+...+.+++|+|   ++.++++++.|
T Consensus       156 ~~~~~~~~~~~v~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d  233 (357)
T 3i2n_A          156 MEPVQGENKRDCWTVAFGNAYNQE--ERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLE  233 (357)
T ss_dssp             ECCCTTSCCCCEEEEEEECCCC-C--CCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEEST
T ss_pred             ccccCCCCCCceEEEEEEeccCCC--CCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCC
Confidence            655544    7888884    455  5899999999999999999999888878899999999999   99999999999


Q ss_pred             CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCc-----------------
Q 035621          244 GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAAEDGSVYIWEIEKR-----------------  305 (387)
Q Consensus       244 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~-----------------  305 (387)
                      |.|++||++........    .......|...|++++|+|+++ +|++++.||.|++||+.++                 
T Consensus       234 g~i~i~d~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~  309 (357)
T 3i2n_A          234 GKFHVFDMRTQHPTKGF----ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAG  309 (357)
T ss_dssp             TEEEEEEEEEEETTTEE----EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCC
T ss_pred             CeEEEEeCcCCCcccce----eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccc
Confidence            99999999875432211    1112347999999999999998 8999999999999999864                 


Q ss_pred             --cEEEEeecccCCCceeEEEEec
Q 035621          306 --QVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       306 --~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                        +++..+..| .+.|+++.|++.
T Consensus       310 ~~~~~~~~~~~-~~~v~~~~~s~~  332 (357)
T 3i2n_A          310 SVSLLQNVTLS-TQPISSLDWSPD  332 (357)
T ss_dssp             EEEEEEEEECC-SSCEEEEEECSS
T ss_pred             ccceeeccccC-CCCeeEEEEcCC
Confidence              456666666 457888877653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-36  Score=261.05  Aligned_cols=279  Identities=13%  Similarity=0.173  Sum_probs=235.9

Q ss_pred             eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEE
Q 035621           30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVY  108 (387)
Q Consensus        30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~  108 (387)
                      ....+.+|..+|++++|+|++.+    +++++.||.|++||+.+++.+..+. |...|.+++|+|++++|++++.||.|+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~----l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~   99 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDL----LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK   99 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCE----EEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             ccEEEEEeeceEEEEEEcCCCCE----EEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            34567899999999999996544    4458899999999999999888887 778999999999999999999999999


Q ss_pred             EEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCcccccCCCCCCCCccceEeeeccCC--C
Q 035621          109 AISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD-----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND--S  181 (387)
Q Consensus       109 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  181 (387)
                      +||+.+++.+..+. +...+.+++|+|+++++++++.+     +.|++||+.......... .........+..|..  .
T Consensus       100 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B          100 LWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT-KVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             EEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE-EECSSCSEEEECCTTCCC
T ss_pred             EEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec-ccccceeeeccCCcCccc
Confidence            99999999998887 88999999999999999999999     999999995432111000 011234455666766  9


Q ss_pred             eEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-CcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc
Q 035621          182 VTAITCCIGSFNSIIISCSMDCTCKFWRLLN-GTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM  259 (387)
Q Consensus       182 i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  259 (387)
                      +.+++|+|++  ++|++++.||.|++||+++ .+.+..+. +...|.+++|+|++++|++++.|+.|++||+...     
T Consensus       178 ~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-----  250 (369)
T 3zwl_B          178 ATVAGWSTKG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL-----  250 (369)
T ss_dssp             EEEEEECGGG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----
T ss_pred             eeEEEEcCCC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC-----
Confidence            9999999975  8999999999999999998 67777777 6789999999999999999999999999999873     


Q ss_pred             cccceeEeecccccccEEEEEEecCCCEEEEEeCCC--------------cEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621          260 HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG--------------SVYIWEIEKRQVVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  325 (387)
                         .....+  .+...+..++|+|+++++++++.++              .+++||+.+++.+..+..|. +.|+++.|+
T Consensus       251 ---~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~s  324 (369)
T 3zwl_B          251 ---QVLKKY--ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF-GPLNTVAIS  324 (369)
T ss_dssp             ---CEEEEE--ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCS-SCEEEEEEC
T ss_pred             ---ceeeee--cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheeccc-CcEEEEEEC
Confidence               222222  3778899999999999999999988              89999999999999998874 589999887


Q ss_pred             ec
Q 035621          326 TG  327 (387)
Q Consensus       326 ~~  327 (387)
                      +.
T Consensus       325 ~~  326 (369)
T 3zwl_B          325 PQ  326 (369)
T ss_dssp             TT
T ss_pred             CC
Confidence            63

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.2e-38  Score=280.28  Aligned_cols=277  Identities=12%  Similarity=0.105  Sum_probs=207.8

Q ss_pred             eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc---CCCCCeeeEEecc-CCCEEEEecCCC
Q 035621           30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI---PVPEPVAPLATTA-DGSYLFTGGLSG  105 (387)
Q Consensus        30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~dg  105 (387)
                      ......+|...|++|+|+|..   ...+++|+.||.|+|||+.+++....+   .|.+.|++++|+| ++++|++|+.||
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~---~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~  187 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTH---PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG  187 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSC---TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred             ecccCCCCCCCEEEEEEeCCC---CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence            344556788899999999831   123455999999999999877654433   3778999999998 689999999999


Q ss_pred             cEEEEeCCCCceeEEcc--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeE
Q 035621          106 NVYAISVPKGDILRSFS--AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVT  183 (387)
Q Consensus       106 ~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  183 (387)
                      +|++||++++.......  .+...+.+++|+|++++|++|+.||.|++||+.             ...+..+.+|...|.
T Consensus       188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-------------~~~~~~~~~h~~~v~  254 (435)
T 4e54_B          188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-------------GKELWNLRMHKKKVT  254 (435)
T ss_dssp             CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-------------SCBCCCSBCCSSCEE
T ss_pred             EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-------------cceeEEEecccceEE
Confidence            99999997765433333  334567899999999999999999999999982             345667789999999


Q ss_pred             EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE----ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc
Q 035621          184 AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV----TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM  259 (387)
Q Consensus       184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  259 (387)
                      +++|+|++ ..++++++.|+.|++||+++.+....+    .|...|.+++|+|++++|++++.||.|++||+........
T Consensus       255 ~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~  333 (435)
T 4e54_B          255 HVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG  333 (435)
T ss_dssp             EEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE
T ss_pred             eeeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE
Confidence            99999986 468999999999999999887644333    3678999999999999999999999999999987543221


Q ss_pred             cccceeEeecccccccEEEEEEecCCCEEEEEe------------CCCcEEEEECCCccEEEEeecccCCCceeE-EEEe
Q 035621          260 HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA------------EDGSVYIWEIEKRQVVMVLKNELAGSISEM-VIAT  326 (387)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~~  326 (387)
                      .......   ......+....|+|++.++++++            .++.|++||..+++++..+..++...|.++ +|++
T Consensus       334 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp  410 (435)
T 4e54_B          334 LIPHPHR---HFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP  410 (435)
T ss_dssp             ECCCCCC---CCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT
T ss_pred             Eeccccc---ccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC
Confidence            1100000   00011223345555555555443            346899999999999999876666677776 4543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2e-36  Score=273.53  Aligned_cols=269  Identities=12%  Similarity=0.155  Sum_probs=227.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc--
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN--   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~--   79 (387)
                      ++|+|++ +|++|+.||+|++||+.+++.+..+.+|..+|.+++|++..  ....+++++.|+.|++||+.++.....  
T Consensus       168 l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  244 (464)
T 3v7d_B          168 LKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK--NIKYIVTGSRDNTLHVWKLPKESSVPDHG  244 (464)
T ss_dssp             EEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESS--SCEEEEEEETTSCEEEEECCCCCCC----
T ss_pred             EEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCC--CCCEEEEEcCCCcEEEeeCCCCccccccc
Confidence            5688888 99999999999999999999999999999999999998521  223455589999999999987754321  


Q ss_pred             ---------------------c-CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCC
Q 035621           80 ---------------------I-PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDG  137 (387)
Q Consensus        80 ---------------------~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  137 (387)
                                           + .+...+.++  +++++++++|+.||.|++||+++++++..+.+|...|.+++|+|++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  322 (464)
T 3v7d_B          245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER  322 (464)
T ss_dssp             --CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred             ccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC
Confidence                                 1 134455554  6788999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE
Q 035621          138 SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS  217 (387)
Q Consensus       138 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  217 (387)
                      +++++++.||.|++||+            .....+..+.+|...|.+++++    +.++++++.||.|++||+.++....
T Consensus       323 ~~l~sg~~dg~i~vwd~------------~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~v~vwd~~~~~~~~  386 (464)
T 3v7d_B          323 KRCISASMDTTIRIWDL------------ENGELMYTLQGHTALVGLLRLS----DKFLVSAAADGSIRGWDANDYSRKF  386 (464)
T ss_dssp             TEEEEEETTSCEEEEET------------TTTEEEEEECCCSSCEEEEEEC----SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CEEEEEeCCCcEEEEEC------------CCCcEEEEEeCCCCcEEEEEEc----CCEEEEEeCCCcEEEEECCCCceee
Confidence            99999999999999999            5677888999999999999986    3799999999999999999999888


Q ss_pred             EEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcE
Q 035621          218 TVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSV  297 (387)
Q Consensus       218 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  297 (387)
                      ...+...+..++|+|+++++++++ ||.|++||+.++        ..+......|...|.+++|+ +..++++++.||.+
T Consensus       387 ~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g--------~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~  456 (464)
T 3v7d_B          387 SYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG--------KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQS  456 (464)
T ss_dssp             EEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC--------CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEE
T ss_pred             eecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC--------cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeE
Confidence            888888899999999999999988 899999999983        34444455789999999997 34455566677765


Q ss_pred             EEEE
Q 035621          298 YIWE  301 (387)
Q Consensus       298 ~iwd  301 (387)
                      .+|-
T Consensus       457 ~i~~  460 (464)
T 3v7d_B          457 FLEI  460 (464)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.6e-37  Score=294.65  Aligned_cols=274  Identities=20%  Similarity=0.201  Sum_probs=239.1

Q ss_pred             ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcE
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNV  107 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i  107 (387)
                      +..+.+.+|.+.|.+++|+|++.+.    ++++.||.|++||+.+++.+..+. |..+|.+++|+|++++|++++.||.|
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~l----a~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWV----LTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEE----EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEE----EEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence            4566788999999999999965544    448899999999999998887776 77899999999999999999999999


Q ss_pred             EEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621          108 YAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC  187 (387)
Q Consensus       108 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  187 (387)
                      ++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||+..           .......+..|...|.+++|
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~-----------~~~~~~~~~~~~~~v~~~~~  148 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-----------NWALEQTFEGHEHFVMCVAF  148 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG-----------TSEEEEEEECCSSCEEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC-----------CceEEEEEcCCCCcEEEEEE
Confidence            9999999999999999999999999999999999999999999999932           23566778899999999999


Q ss_pred             eeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCC--CCCeEEEEccCCcEEEEeccccccccccccc
Q 035621          188 CIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDP--TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ  263 (387)
Q Consensus       188 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  263 (387)
                      +|.. +..+++++.||.|++||+.++.....+.  +...+.+++|+|  ++.++++++.||.|++||+...         
T Consensus       149 ~p~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---------  218 (814)
T 3mkq_A          149 NPKD-PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---------  218 (814)
T ss_dssp             ETTE-EEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---------
T ss_pred             EcCC-CCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---------
Confidence            9831 4899999999999999999888777776  337899999999  9999999999999999999863         


Q ss_pred             eeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621          264 ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       264 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  328 (387)
                      .....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+. ..+.++.+++..
T Consensus       219 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~  282 (814)
T 3mkq_A          219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL-ERSWCIATHPTG  282 (814)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS-SSEEEEEECTTC
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC-CcEEEEEEccCC
Confidence            2233345789999999999999999999999999999999999999998764 477777765543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.1e-37  Score=272.88  Aligned_cols=277  Identities=18%  Similarity=0.233  Sum_probs=224.7

Q ss_pred             ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC------CCCCeeeEEeccC----CCEEEEecC
Q 035621           34 FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP------VPEPVAPLATTAD----GSYLFTGGL  103 (387)
Q Consensus        34 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~------~~~~v~~~~~~~~----~~~l~~~~~  103 (387)
                      ..+|..+|.+++|+|...-....+++++.++.|++||+.+++.+..+.      +...|.+++|+|+    +.+|++|+.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            458999999999998310001122235667799999999887765554      5578999999998    679999999


Q ss_pred             CCcEEEEeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee---eccC
Q 035621          104 SGNVYAISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF---VAHN  179 (387)
Q Consensus       104 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~  179 (387)
                      ||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+            .....+..+   ..|.
T Consensus        94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~------------~~~~~~~~~~~~~~~~  161 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI------------QTDTLVAIFGGVEGHR  161 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET------------TTTEEEEEECSTTSCS
T ss_pred             CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe------------ecCeEEEEeccccccc
Confidence            99999999999999999999999999999999 8999999999999999999            455566666   6899


Q ss_pred             CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-----------------------------cCCceeEEEe
Q 035621          180 DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-----------------------------FPCAIMGLAL  230 (387)
Q Consensus       180 ~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------------~~~~v~~~~~  230 (387)
                      ..|.+++|+|++  .+|++++.||.|++||+++++....+.                             +...|.+++|
T Consensus       162 ~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (366)
T 3k26_A          162 DEVLSADYDLLG--EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW  239 (366)
T ss_dssp             SCEEEEEECTTS--SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred             CceeEEEECCCC--CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence            999999999975  899999999999999999875443222                             6788999999


Q ss_pred             CCCCCeEEEEccCCcEEEEeccccccccc-----cccceeEeecccccccEEEEEEecC--CCEEEEEeCCCcEEEEECC
Q 035621          231 DPTETDFFAAGSDGLIYKGLLKYQSRQQM-----HKGQELVTLANRHDGVVVSVMMMNE--GKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~  303 (387)
                      +  ++++++++.|+.|++||+........     .........+..|...|++++|+|+  +++|++|+.||.|++||+.
T Consensus       240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~  317 (366)
T 3k26_A          240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE  317 (366)
T ss_dssp             E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred             c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence            8  77999999999999999987543111     0111334445678899999999999  9999999999999999999


Q ss_pred             CccE----EEEeeccc-CCCceeEEEEe
Q 035621          304 KRQV----VMVLKNEL-AGSISEMVIAT  326 (387)
Q Consensus       304 ~~~~----~~~~~~~~-~~~v~~~~~~~  326 (387)
                      ++++    ...+..|. ...|+++.|++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~  345 (366)
T 3k26_A          318 VEDPHKAKCTTLTHHKCGAAIRQTSFSR  345 (366)
T ss_dssp             SSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred             CCCCccccceEEcccccCCceEEEEeCC
Confidence            9764    34666653 56899998876

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-36  Score=258.04  Aligned_cols=265  Identities=20%  Similarity=0.230  Sum_probs=224.4

Q ss_pred             CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCc
Q 035621           28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGN  106 (387)
Q Consensus        28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~  106 (387)
                      .+....+.+|.++|++++| ++..    .+++++.||.|++||+.+++....+. +...|.+++|+|++++|++++.||.
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~----~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~   82 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDS----KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM   82 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETT----EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCC----EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCe
Confidence            3678889999999999999 7433    34558999999999998887666555 6789999999999999999999999


Q ss_pred             EEEEeCCCC---ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeE
Q 035621          107 VYAISVPKG---DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVT  183 (387)
Q Consensus       107 i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  183 (387)
                      |++|++...   +.+..+..|...|.+++|  +++++++++.||.|++||.              ......+..|...+.
T Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--------------~~~~~~~~~~~~~v~  146 (313)
T 3odt_A           83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--------------GSLVYNLQAHNASVW  146 (313)
T ss_dssp             EEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--------------TEEEEEEECCSSCEE
T ss_pred             EEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--------------CcEEEecccCCCcee
Confidence            999998654   557778899999999999  5779999999999999984              235667788999999


Q ss_pred             EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc
Q 035621          184 AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK  261 (387)
Q Consensus       184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  261 (387)
                      ++.+.|.. ++++++++.|+.|++||  ..+....+.  +...+.+++|+|++. +++++.||.|++||++...      
T Consensus       147 ~~~~~~~~-~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~------  216 (313)
T 3odt_A          147 DAKVVSFS-ENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD------  216 (313)
T ss_dssp             EEEEEETT-TTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC------
T ss_pred             EEEEccCC-CCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh------
Confidence            99999832 48999999999999999  445555555  678999999999998 9999999999999998732      


Q ss_pred             cceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEecC
Q 035621          262 GQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       262 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  328 (387)
                         ....+..|...|++++|+|++ .|++++.||.|++||+.+++++..+..+. ..|+++.|++..
T Consensus       217 ---~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~  278 (313)
T 3odt_A          217 ---VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA-ISIWSVDCMSNG  278 (313)
T ss_dssp             ---EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS-SCEEEEEECTTS
T ss_pred             ---hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC-ceEEEEEEccCC
Confidence               223345799999999999999 68999999999999999999999998774 488888887654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.7e-36  Score=263.26  Aligned_cols=277  Identities=14%  Similarity=0.155  Sum_probs=214.4

Q ss_pred             EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC----ccccc-CCCCCeeeEEecc--CCCEEEEecCC
Q 035621           32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST----PLHNI-PVPEPVAPLATTA--DGSYLFTGGLS  104 (387)
Q Consensus        32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~----~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d  104 (387)
                      ..+.+|.++|++++|+|++.+    +++++.||.|++||+.++.    ....+ .|...|.+++|+|  ++++|++++.|
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~----l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d   80 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRH----VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD   80 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSE----EEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             ccCcccccceeEEEEcCCCCE----EEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence            346789999999999996544    4458999999999998764    33333 3778999999999  69999999999


Q ss_pred             CcEEEEeCCCC---------ceeEEccCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCcccccCCCCCCC-Cccce
Q 035621          105 GNVYAISVPKG---------DILRSFSAHDKPVSCLKISPD--GSLLISGGDDGVIATVPIFQLVDEHTDDKNP-DDLML  172 (387)
Q Consensus       105 g~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~  172 (387)
                      |.|++||++++         +.+..+..|...|.+++|+|+  ++++++++.||.|++||++............ .....
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            99999999887         557788899999999999999  9999999999999999995432111000000 00000


Q ss_pred             EeeeccCCCeEEEEEeeCC-CCceEEEEeCCCcEEEEeCCCCcE--EEEEe-cCCceeEEEeCCCC----CeEEEEccCC
Q 035621          173 QKFVAHNDSVTAITCCIGS-FNSIIISCSMDCTCKFWRLLNGTH--LSTVT-FPCAIMGLALDPTE----TDFFAAGSDG  244 (387)
Q Consensus       173 ~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~v~~~~~~~~~----~~l~~~~~dg  244 (387)
                      .....|...+.+++|+|+. ++.++++++.|+.+.+|+...++.  +..+. |...|.+++|+|++    ++|++++.||
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg  240 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG  240 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence            0112577899999999861 248999999999998888887765  44444 67899999999998    8999999999


Q ss_pred             cEEEEecccccccccc-------------------------------------ccceeEeecccccccEEEEEEecCCCE
Q 035621          245 LIYKGLLKYQSRQQMH-------------------------------------KGQELVTLANRHDGVVVSVMMMNEGKN  287 (387)
Q Consensus       245 ~i~i~d~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~  287 (387)
                      .|++||++........                                     ........+.+|...|++++|+|++++
T Consensus       241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~  320 (351)
T 3f3f_A          241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI  320 (351)
T ss_dssp             CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred             eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence            9999999874211100                                     011334445689999999999999999


Q ss_pred             EEEEeCCCcEEEEECCCccEEEEee
Q 035621          288 LVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       288 l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      |++++.||.|++|++.+++.+..+.
T Consensus       321 l~s~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          321 LSSAGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             EEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             EEEecCCCcEEEEecCcCcchhhee
Confidence            9999999999999999887665554

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-37  Score=272.50  Aligned_cols=250  Identities=11%  Similarity=0.088  Sum_probs=199.1

Q ss_pred             ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC--CcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEE
Q 035621           34 FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS--TPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAI  110 (387)
Q Consensus        34 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  110 (387)
                      ++.+..+|++++|+|++.    .+++++.|+.|++||+.++  +....+. |...|.+++|+|++++|++++.|+.|++|
T Consensus         7 ~~~~~~~v~~~~~s~~g~----~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vw   82 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRT----EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY   82 (377)
T ss_dssp             EEECSSCCSCCEECSSSS----EEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred             EecCCCcEEEEEECCCCC----EEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            344677899999999654    4455889999999999988  5666665 67899999999999999999999999999


Q ss_pred             eCCCCc---eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec-cCCCeEEEE
Q 035621          111 SVPKGD---ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA-HNDSVTAIT  186 (387)
Q Consensus       111 d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~  186 (387)
                      |+.+++   ....+..|...|.+++|+|++++|++++.|+.|++||+...         ........+.. |...|.+++
T Consensus        83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~h~~~v~~~~  153 (377)
T 3dwl_C           83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE---------NDWWVSKHLKRPLRSTILSLD  153 (377)
T ss_dssp             ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC--------------CCCCEEECSSCCSCEEEEE
T ss_pred             EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc---------ccceeeeEeecccCCCeEEEE
Confidence            998877   67778889999999999999999999999999999999431         11113566666 999999999


Q ss_pred             EeeCCCCceEEEEeCCCcEEEEeCCC------------------CcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEE
Q 035621          187 CCIGSFNSIIISCSMDCTCKFWRLLN------------------GTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYK  248 (387)
Q Consensus       187 ~~~~~~~~~l~s~~~d~~i~iwd~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  248 (387)
                      |+|++  ++|++++.|+.|++||+..                  ++++..+.+...|.+++|+|++++|++++.||.|++
T Consensus       154 ~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i  231 (377)
T 3dwl_C          154 WHPNN--VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTI  231 (377)
T ss_dssp             ECTTS--SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred             EcCCC--CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence            99975  8999999999999999852                  445555567788999999999999999999999999


Q ss_pred             EeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          249 GLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       249 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      ||+......     ......+..|...|.+++|+|++++|++|+.|+.+ +|+...
T Consensus       232 wd~~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          232 AYPSAPEQP-----PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             CEECSTTSC-----EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             EECCCCCCc-----ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence            999874321     11123345789999999999999999999766655 676653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-37  Score=273.40  Aligned_cols=260  Identities=13%  Similarity=0.089  Sum_probs=205.8

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|||||+++|+++.|++|+  |.+.++   .+.+|...|.+++|+|++           .++.+.+|+.+ +.....+.
T Consensus        21 v~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-----------~~~~~~~~~~~-~~~~~~~~   83 (588)
T 2j04_A           21 LTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-----------FENKLDFELAQ-QNGLLNSQ   83 (588)
T ss_dssp             EEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-----------CCCTTTTSCCC-SSCSSTTS
T ss_pred             EEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-----------CcceEEEEeCC-CceEeecC
Confidence            68999999999999999999  755554   457999999999999953           34444444432 22344445


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCC-----CeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDK-----PVSCLKISPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      +...|.+++|+|+|++||+++.||.|++||...  ++..+. |..     .+.+++|+|||++|++|+.||+|++||+..
T Consensus        84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~  160 (588)
T 2j04_A           84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK  160 (588)
T ss_dssp             CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence            678899999999999999999999999999544  666677 665     499999999999999999999999999932


Q ss_pred             ccccCCCCCCCCccceEee----eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE---EEEEe--cCCceeE
Q 035621          157 LVDEHTDDKNPDDLMLQKF----VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH---LSTVT--FPCAIMG  227 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~--~~~~v~~  227 (387)
                      ....     .+.-..+..+    .+|...|.+++|+|+  +  +++++.|++|++||+..+..   ..++.  +...|.+
T Consensus       161 ~~l~-----~~~~i~l~ti~~~~~gh~~~V~sVawSPd--g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s  231 (588)
T 2j04_A          161 NSEN-----TPEFYFESSIRLSDAGSKDWVTHIVWYED--V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD  231 (588)
T ss_dssp             CTTT-----CCCCEEEEEEECSCTTCCCCEEEEEEETT--E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred             Cccc-----cccceeeeeeecccccccccEEEEEEcCC--c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence            1000     0000134555    567789999999987  3  88899999999999988773   34553  5578999


Q ss_pred             EEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE--ecCCCEEEEEeCCCcEEEEECC
Q 035621          228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM--MNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      ++|+  |+.|++++ ++.|++||+...         .......+|...|..++|  +|++..|+++++||+ ++|..+
T Consensus       232 vaFs--g~~LASa~-~~tIkLWd~~~~---------~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          232 LKIV--DYKVVLTC-PGYVHKIDLKNY---------SISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EEEE--TTEEEEEC-SSEEEEEETTTT---------EEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             EEEE--CCEEEEEe-CCeEEEEECCCC---------eEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            9999  68888887 699999999862         222223379999999999  999999999999999 999875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.8e-36  Score=262.69  Aligned_cols=275  Identities=13%  Similarity=0.159  Sum_probs=218.9

Q ss_pred             EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC----cccccCCCCCeeeEEeccCCC-EEEEecCCCc
Q 035621           32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST----PLHNIPVPEPVAPLATTADGS-YLFTGGLSGN  106 (387)
Q Consensus        32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~  106 (387)
                      ....+|.+.|.+++|+|++.+    +++++.|+.|++|++.+++    ......+...|.+++|+|+++ +|++|+.||.
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~----l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~   80 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSL----LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTE----EEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             ecccCCCCcEEEEEEcCCCCE----EEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCe
Confidence            345689999999999996543    4458899999999999887    555556889999999999999 9999999999


Q ss_pred             EEEEeC-CCCceeEEccC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeE
Q 035621          107 VYAISV-PKGDILRSFSA--HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVT  183 (387)
Q Consensus       107 i~i~d~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  183 (387)
                      |++||+ .+++. ..+..  |...|.+++|+| ++++++++.|+.|++||++.......   .....++..+. |...+.
T Consensus        81 i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~-~~~~v~  154 (342)
T 1yfq_A           81 ILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI---AVKNLNSNNTK-VKNKIF  154 (342)
T ss_dssp             EEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE---EEEESCSSSSS-SCCCEE
T ss_pred             EEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc---cccCCeeeEEe-eCCceE
Confidence            999999 77765 67778  999999999999 99999999999999999843100000   00023333444 888999


Q ss_pred             EEEEeeCCCCceEEEEeCCCcEEEEeCCC-CcEE---EEEecCCceeEEEeCC-CCCeEEEEccCCcEEEEecccccccc
Q 035621          184 AITCCIGSFNSIIISCSMDCTCKFWRLLN-GTHL---STVTFPCAIMGLALDP-TETDFFAAGSDGLIYKGLLKYQSRQQ  258 (387)
Q Consensus       184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~---~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~  258 (387)
                      +++|+++   . +++++.|+.|++||+++ +...   ....+...+.+++|+| +++++++++.||.|++|++.......
T Consensus       155 ~~~~~~~---~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~  230 (342)
T 1yfq_A          155 TMDTNSS---R-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY  230 (342)
T ss_dssp             EEEECSS---E-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred             EEEecCC---c-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc
Confidence            9999866   2 99999999999999998 5432   2223678899999999 99999999999999999998741000


Q ss_pred             ccccceeEeecccc---------cccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEE
Q 035621          259 MHKGQELVTLANRH---------DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMV  323 (387)
Q Consensus       259 ~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  323 (387)
                      .   ......+..|         ...|.+++|+|++++|++++.||.|++||+.+++++..+..|+.+.|+++.
T Consensus       231 ~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~  301 (342)
T 1yfq_A          231 N---SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA  301 (342)
T ss_dssp             T---CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred             c---cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec
Confidence            0   0111112234         449999999999999999999999999999999999999987566888887

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.6e-37  Score=266.92  Aligned_cols=276  Identities=10%  Similarity=0.081  Sum_probs=223.2

Q ss_pred             ccccCC---CcEEEeeCCCCcEEEEeCCC-Ccee-EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621            2 LHHLPC---NEVILTSSPEGPITAYNPSS-GAIL-AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP   76 (387)
Q Consensus         2 l~~s~~---~~~l~~~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~   76 (387)
                      ++|+|+   |++|++|+.||.|++||+.+ +..+ ..+.+|..+|.+++|+|++.+    +++++.||.|++||+.+++.
T Consensus        45 ~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~~~dg~v~iwd~~~~~~  120 (368)
T 3mmy_A           45 LSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK----VFTASCDKTAKMWDLSSNQA  120 (368)
T ss_dssp             EEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSE----EEEEETTSEEEEEETTTTEE
T ss_pred             EEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCE----EEEEcCCCcEEEEEcCCCCc
Confidence            579999   69999999999999999987 5554 778899999999999996544    44589999999999999998


Q ss_pred             ccccCCCCCeeeEEe--ccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621           77 LHNIPVPEPVAPLAT--TADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        77 ~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  154 (387)
                      .....|...|.+++|  +|++++|++++.||.|++||+++++.+..+..+. .+.++.+.+  ..+++++.++.+++|++
T Consensus       121 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~i~~~~~  197 (368)
T 3mmy_A          121 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVATAERGLIVYQL  197 (368)
T ss_dssp             EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGCEEEEEC
T ss_pred             eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEEeCCCcEEEEEe
Confidence            888889999999999  8999999999999999999999999988887654 566666654  57899999999999999


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCC--CceEEEEeCCCcEEEEeCCCC---cEEEEEecCC------
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF--NSIIISCSMDCTCKFWRLLNG---THLSTVTFPC------  223 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~------  223 (387)
                      ...          ..........+...+.++.+.+...  ...+++++.|+.|++||++..   ..+..+..+.      
T Consensus       198 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  267 (368)
T 3mmy_A          198 ENQ----------PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT  267 (368)
T ss_dssp             SSS----------CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred             ccc----------cchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence            431          1111122223445666777766542  234999999999999999987   4555555332      


Q ss_pred             -------ceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCc
Q 035621          224 -------AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS  296 (387)
Q Consensus       224 -------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  296 (387)
                             .|.+++|+|++++|++++.||.|++||+.+.         .....+..|...|.+++|+|++++|++++.|+.
T Consensus       268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~  338 (368)
T 3mmy_A          268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---------TKLKTSEQLDQPISACCFNHNGNIFAYASSYDW  338 (368)
T ss_dssp             CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---------EEEEECCCCSSCEEEEEECTTSSCEEEEECCCS
T ss_pred             cccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---------cEEEEecCCCCCceEEEECCCCCeEEEEecccc
Confidence                   6999999999999999999999999999873         233344578999999999999999999999886


Q ss_pred             EEEEECC
Q 035621          297 VYIWEIE  303 (387)
Q Consensus       297 i~iwd~~  303 (387)
                      .+.|++.
T Consensus       339 ~~~~~~~  345 (368)
T 3mmy_A          339 SKGHEFY  345 (368)
T ss_dssp             TTCGGGC
T ss_pred             ccccccc
Confidence            5555543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.2e-35  Score=260.54  Aligned_cols=246  Identities=13%  Similarity=0.142  Sum_probs=206.5

Q ss_pred             ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--cccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEE
Q 035621           34 FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAI  110 (387)
Q Consensus        34 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~  110 (387)
                      +..|..+|.+++|+|++.+.    ++++.|+.|++||+.+++  .+..+. |...|.+++|+|++++|++++.||.|++|
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l----~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQI----AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEE----EEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             ecccCCCeEEEEECCCCCEE----EEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence            34588999999999965544    448899999999999886  666664 77899999999999999999999999999


Q ss_pred             eCCCCceeEE--ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCc-cceEeeeccCCCeEEEEE
Q 035621          111 SVPKGDILRS--FSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDD-LMLQKFVAHNDSVTAITC  187 (387)
Q Consensus       111 d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~  187 (387)
                      |+++++....  +..|...|.+++|+|++++|++++.|+.|++||+...         ... ........|...|.+++|
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~---------~~~~~~~~~~~~~~~~i~~~~~  150 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE---------NDWWVCKHIKKPIRSTVLSLDW  150 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT---------TTEEEEEEECTTCCSCEEEEEE
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCC---------CcceeeeeeecccCCCeeEEEE
Confidence            9988875443  4678999999999999999999999999999999321         001 122233568899999999


Q ss_pred             eeCCCCceEEEEeCCCcEEEEeCC------------------CCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEE
Q 035621          188 CIGSFNSIIISCSMDCTCKFWRLL------------------NGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYK  248 (387)
Q Consensus       188 ~~~~~~~~l~s~~~d~~i~iwd~~------------------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i  248 (387)
                      +|++  ++|++++.|+.|++||++                  .++.+..+. +...+.+++|+|++++|++++.|+.|++
T Consensus       151 ~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  228 (372)
T 1k8k_C          151 HPNS--VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL  228 (372)
T ss_dssp             CTTS--SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             cCCC--CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEE
Confidence            9975  899999999999999953                  677777775 6788999999999999999999999999


Q ss_pred             EeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          249 GLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       249 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      ||++...        . ...+..|..+|.+++|+|++++|++| .|+.|++|++.+
T Consensus       229 ~d~~~~~--------~-~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          229 ADADKKM--------A-VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEGGGTT--------E-EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EECCCCc--------e-eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9998732        2 22334788899999999999988887 899999999988

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-36  Score=268.16  Aligned_cols=277  Identities=15%  Similarity=0.150  Sum_probs=222.8

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc---eeEeccC------------------------------------------
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA---ILAHFSG------------------------------------------   36 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~------------------------------------------   36 (387)
                      ++|+|+|++|+++ .++.|++||+.+|+   .+..+..                                          
T Consensus        10 v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (450)
T 2vdu_B           10 LLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTA   88 (450)
T ss_dssp             EEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------------
T ss_pred             EEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccC
Confidence            5799999977766 46899999999998   6655543                                          


Q ss_pred             ------------CCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc--CCCccccc---CCCCCeeeEEeccCCCEEE
Q 035621           37 ------------SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW--SSTPLHNI---PVPEPVAPLATTADGSYLF   99 (387)
Q Consensus        37 ------------~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~   99 (387)
                                  |...|.+++|+|++..+   +++++.||.|++||+.  +++.+..+   .+...|.+++|+|++++|+
T Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l---~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  165 (450)
T 2vdu_B           89 AKVPSPGLGAPPIYSYIRNLRLTSDESRL---IACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI  165 (450)
T ss_dssp             -----------CCCCCEEEEEECTTSSEE---EEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred             ccccCCCCCCCccCCceEEEEEcCCCCEE---EEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE
Confidence                        33369999999965442   1348899999999998  78777776   4668899999999999999


Q ss_pred             EecCCCcEEEEeCCCCceeE----EccCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccce
Q 035621          100 TGGLSGNVYAISVPKGDILR----SFSAHDKPVSCLKISPD---GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML  172 (387)
Q Consensus       100 ~~~~dg~i~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  172 (387)
                      +|+.+|.+++|++.+++...    .+.+|...|++++|+|+   +++|++++.|+.|++||+            .....+
T Consensus       166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~------------~~~~~~  233 (450)
T 2vdu_B          166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY------------PQCFIV  233 (450)
T ss_dssp             EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE------------SCTTCE
T ss_pred             EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC------------CCCcee
Confidence            99999999999998877554    77789999999999999   999999999999999999            444555


Q ss_pred             Ee-eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec--------------------------CCce
Q 035621          173 QK-FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF--------------------------PCAI  225 (387)
Q Consensus       173 ~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------------~~~v  225 (387)
                      .. +.+|...|.+++|+ +  +.+|++++.|+.|++||+.+++++..+..                          ...+
T Consensus       234 ~~~~~~h~~~v~~~~~s-d--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (450)
T 2vdu_B          234 DKWLFGHKHFVSSICCG-K--DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV  310 (450)
T ss_dssp             EEECCCCSSCEEEEEEC-S--TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred             eeeecCCCCceEEEEEC-C--CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence            55 55899999999999 5  59999999999999999999998888752                          2468


Q ss_pred             eEEEeCCCCCeEEEEc-cCCcEEEEec--cccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC------CCc
Q 035621          226 MGLALDPTETDFFAAG-SDGLIYKGLL--KYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE------DGS  296 (387)
Q Consensus       226 ~~~~~~~~~~~l~~~~-~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~  296 (387)
                      .+++|+|+++++++++ .++.|++|++  .....      ......+..| ..|.+++|+|++.++++++.      +..
T Consensus       311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~------l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~  383 (450)
T 2vdu_B          311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGD------LALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNF  383 (450)
T ss_dssp             EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTC------EEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCS
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCc------eeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcc
Confidence            8999999999999998 8999999999  33110      1222333355 78999999996544444443      556


Q ss_pred             EEEEECCC
Q 035621          297 VYIWEIEK  304 (387)
Q Consensus       297 i~iwd~~~  304 (387)
                      |.+|.+..
T Consensus       384 i~v~~~~~  391 (450)
T 2vdu_B          384 AKFIEYNL  391 (450)
T ss_dssp             EEEEEEET
T ss_pred             eEEEEEEc
Confidence            88887653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-36  Score=262.50  Aligned_cols=265  Identities=10%  Similarity=0.053  Sum_probs=211.0

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc---------C
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW---------S   73 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~---------~   73 (387)
                      .+.+++.+|++|+.||.|++||+.+++.+..+.  ...|.++.++|.       +++++.|++|++|+..         +
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-------~~s~s~D~~i~~w~~~~~~~~~~~~~  113 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-------IISRGPCNRLLLLYPGNQITILDSKT  113 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-------EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-------eEEecCCCeEEEEEccCceEEeecCC
Confidence            355788999999999999999999999888876  466888889885       5568999999999765         4


Q ss_pred             CCcccccC--CCCCeeeEEecc--CCCEEEEecCCCcEEEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCc
Q 035621           74 STPLHNIP--VPEPVAPLATTA--DGSYLFTGGLSGNVYAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISGGDDGV  148 (387)
Q Consensus        74 ~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~  148 (387)
                      ++.+..+.  +.++|.+++|+|  +++++++++.||.|++||+++++...... .|...+++++|+|++.+|++|+.||.
T Consensus       114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~  193 (343)
T 3lrv_A          114 NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI  193 (343)
T ss_dssp             CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred             cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE
Confidence            44333333  557899999999  99999999999999999999999876664 45568999999999999999999999


Q ss_pred             EEEEeCCcccccCCCCCCCCccce-Eeeec-cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe----cC
Q 035621          149 IATVPIFQLVDEHTDDKNPDDLML-QKFVA-HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT----FP  222 (387)
Q Consensus       149 i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~  222 (387)
                      |++||++            ..... ..+.. |..+|.+++|+|++  .+|++++ |+.|++||+++++.+..+.    +.
T Consensus       194 i~iwd~~------------~~~~~~~~~~~~h~~~v~~l~fs~~g--~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~  258 (343)
T 3lrv_A          194 LDVYNLS------------SPDQASSRFPVDEEAKIKEVKFADNG--YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPE  258 (343)
T ss_dssp             EEEEESS------------CTTSCCEECCCCTTSCEEEEEECTTS--SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC--
T ss_pred             EEEEECC------------CCCCCccEEeccCCCCEEEEEEeCCC--CEEEEEe-CCeEEEEEcCCCCcceeeccccccc
Confidence            9999993            44444 56677 99999999999985  8999999 5599999999987654443    11


Q ss_pred             Cce--eEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEec---CCCEEEEEeCCCc
Q 035621          223 CAI--MGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN---EGKNLVSAAEDGS  296 (387)
Q Consensus       223 ~~v--~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~  296 (387)
                      ..+  .+++|+|++++|++++. |+.+++|++......        ..     ..++..++|.+   +...+++++.||.
T Consensus       259 ~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~~l~~~~~d~~  325 (343)
T 3lrv_A          259 FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--------WT-----KDEESALCLQSDTADFTDMDVVCGDGG  325 (343)
T ss_dssp             ---CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--------EE-----EEEEEECCC----CCCCEEEEEEETTE
T ss_pred             ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--------eE-----ecCceeEecCccccccceeEEEecCCc
Confidence            223  46999999999999988 999999999763211        10     15677888888   8889999999999


Q ss_pred             EEEEECCC
Q 035621          297 VYIWEIEK  304 (387)
Q Consensus       297 i~iwd~~~  304 (387)
                      +.++-...
T Consensus       326 ~~~~~~~~  333 (343)
T 3lrv_A          326 IAAILKTN  333 (343)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEecC
Confidence            99886443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.4e-35  Score=259.14  Aligned_cols=265  Identities=15%  Similarity=0.124  Sum_probs=216.9

Q ss_pred             CceeEEEcCccceeeeccccCCCCCeEEEEEccCCC----ccccc-CCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCC
Q 035621           40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST----PLHNI-PVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVP  113 (387)
Q Consensus        40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~----~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~  113 (387)
                      ....++++|+..   ..+++++.||.|++|++....    ....+ .|...|.+++|+| ++++|++|+.||.|++||+.
T Consensus        36 ~~~~~~~~~~~~---~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           36 DSGFCAVNPKFM---ALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             SSCSEEECSSEE---EEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred             CCCcEEECCCeE---EEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence            355678888532   344558899999999996542    22223 3778999999999 99999999999999999998


Q ss_pred             CC-------ceeEEccCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee--eccCCCeE
Q 035621          114 KG-------DILRSFSAHDKPVSCLKISPDG-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF--VAHNDSVT  183 (387)
Q Consensus       114 ~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~  183 (387)
                      ++       +.+..+.+|...|.+++|+|++ ++|++++.||.|++||+            .....+..+  ..|...|.
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~------------~~~~~~~~~~~~~~~~~v~  180 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV------------GTGAAVLTLGPDVHPDTIY  180 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET------------TTTEEEEEECTTTCCSCEE
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC------------CCCCccEEEecCCCCCceE
Confidence            87       5678888999999999999998 69999999999999999            556677777  78999999


Q ss_pred             EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE-e-cCCc-eeEEEeCCCCCeEEEE---ccCCcEEEEeccccccc
Q 035621          184 AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV-T-FPCA-IMGLALDPTETDFFAA---GSDGLIYKGLLKYQSRQ  257 (387)
Q Consensus       184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~-v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~  257 (387)
                      +++|+|++  .+|++++.|+.|++||+++++.+..+ . +... +.+++|+|++.++++|   +.|+.|++||++.... 
T Consensus       181 ~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~-  257 (402)
T 2aq5_A          181 SVDWSRDG--ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE-  257 (402)
T ss_dssp             EEEECTTS--SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS-
T ss_pred             EEEECCCC--CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC-
Confidence            99999974  89999999999999999999999888 3 4443 8999999999999999   7899999999987432 


Q ss_pred             cccccceeEeecccccccEEEEEEecCCCEEE-EEeCCCcEEEEECCCccE-EEEeecc-cCCCceeEEEEecC
Q 035621          258 QMHKGQELVTLANRHDGVVVSVMMMNEGKNLV-SAAEDGSVYIWEIEKRQV-VMVLKNE-LAGSISEMVIATGI  328 (387)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~-~~~~~~~-~~~~v~~~~~~~~~  328 (387)
                            ........|...+.+++|+|++++|+ +|+.||.|++||+.+++. +..+..+ +...+.+++|++..
T Consensus       258 ------~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~  325 (402)
T 2aq5_A          258 ------PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKR  325 (402)
T ss_dssp             ------CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGG
T ss_pred             ------CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccc
Confidence                  11112225778899999999999986 455799999999999884 4444433 35689999998754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.3e-35  Score=258.18  Aligned_cols=289  Identities=11%  Similarity=0.060  Sum_probs=215.6

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|+|||++|++|+.++ ++|||+.+++.......+  .+..+++.+.....   .++++.|+.|++||..+++++..+.
T Consensus        25 v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~d~~v~iWd~~~~~~~~~~~   98 (355)
T 3vu4_A           25 YEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYV---AFVTGVKEVVHIWDDVKKQDVSRIK   98 (355)
T ss_dssp             EEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEE---EEECSSTTEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEE---EEEECCccEEEEEECCCCcEEEEEE
Confidence            68999999999998775 789999888766554322  46777777643322   1337788999999999999999998


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC-ceeEEccCCCCCeEEEEEcCCCCEEEE--EeCCCcEEEEeCCccc
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG-DILRSFSAHDKPVSCLKISPDGSLLIS--GGDDGVIATVPIFQLV  158 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~  158 (387)
                      +..+|.+++++++.  ++++ .++.|++||+.++ +.+..+..   +...+++++  .++++  |+.||.|++||+....
T Consensus        99 ~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~  170 (355)
T 3vu4_A           99 VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSG  170 (355)
T ss_dssp             CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC--
T ss_pred             CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCC
Confidence            99999999999864  4444 4788999999988 66666654   445566777  55665  6899999999995421


Q ss_pred             ccCCCCC---CCCccc-eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCc-EEEEeCCCCcEEEEEe---cCCceeEEEe
Q 035621          159 DEHTDDK---NPDDLM-LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT-CKFWRLLNGTHLSTVT---FPCAIMGLAL  230 (387)
Q Consensus       159 ~~~~~~~---~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~---~~~~v~~~~~  230 (387)
                      .......   .....+ +..+.+|..+|.+++|+|++  .+|++|+.|++ |++||+++++++..+.   |...|.+++|
T Consensus       171 ~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g--~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~  248 (355)
T 3vu4_A          171 SATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS--DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKW  248 (355)
T ss_dssp             ----------------CCEEECCCSSCEEEEEECTTS--SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEE
T ss_pred             ccccccccccccccCcccEEEEccCCceEEEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEE
Confidence            1100000   001112 67889999999999999975  99999999998 9999999999999998   7889999999


Q ss_pred             CCCCCeEEEEccCCcEEEEeccccccccccccc--------------eeEeecccccccEEEEEEecCCCEEEEEeCCCc
Q 035621          231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQ--------------ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS  296 (387)
Q Consensus       231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  296 (387)
                      +|++++|++++.|+.|++||+............              ....+...+......++|++++++|++++.||.
T Consensus       249 s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~  328 (355)
T 3vu4_A          249 STDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRM  328 (355)
T ss_dssp             CTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTE
T ss_pred             CCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCe
Confidence            999999999999999999999764321110000              001111122233467899999999999999999


Q ss_pred             EEEEECCCcc
Q 035621          297 VYIWEIEKRQ  306 (387)
Q Consensus       297 i~iwd~~~~~  306 (387)
                      +++|++..++
T Consensus       329 ~~~~~~~~~~  338 (355)
T 3vu4_A          329 IETFKVVFDD  338 (355)
T ss_dssp             EEEEEEEEET
T ss_pred             EEEEEEEcCC
Confidence            9999987643

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=6.8e-35  Score=260.52  Aligned_cols=262  Identities=16%  Similarity=0.144  Sum_probs=211.5

Q ss_pred             EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC----------CCcccccC-CCCCeeeEEeccCCC-EEE
Q 035621           32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS----------STPLHNIP-VPEPVAPLATTADGS-YLF   99 (387)
Q Consensus        32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~----------~~~~~~~~-~~~~v~~~~~~~~~~-~l~   99 (387)
                      .....|.+.|++++|+|+.   ...+++++.+|.|++|++.+          ......+. |...+.+++|+|++. +|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~---~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  198 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQN---ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL  198 (430)
T ss_dssp             EEEEEESSCCSEEEEETTE---EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred             EEEEcCCCcEEEEEECCCC---CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence            3445699999999999951   23445589999999999976          34444443 678899999999988 999


Q ss_pred             EecCCCcEEEEeCCCCce-------eEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccc
Q 035621          100 TGGLSGNVYAISVPKGDI-------LRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLM  171 (387)
Q Consensus       100 ~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  171 (387)
                      +|+.||.|++||+..+..       ...+..|...|.+++|+| ++.+|++++.||.|++||++..         .....
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~---------~~~~~  269 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN---------NTSKP  269 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS---------CSSSC
T ss_pred             EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC---------CCCcc
Confidence            999999999999987422       455678999999999999 6789999999999999999532         11246


Q ss_pred             eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-CcEEEEEe-cCCceeEEEeCCCCC-eEEEEccCCcEEE
Q 035621          172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN-GTHLSTVT-FPCAIMGLALDPTET-DFFAAGSDGLIYK  248 (387)
Q Consensus       172 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i~i  248 (387)
                      +..+..|...|++++|+|++ ..++++|+.||.|++||+++ ..++..+. +...|.+++|+|+++ +|++++.|+.|++
T Consensus       270 ~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i  348 (430)
T 2xyi_A          270 SHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV  348 (430)
T ss_dssp             SEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred             eeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence            66778999999999999985 35799999999999999998 55677776 788999999999995 5888999999999


Q ss_pred             Eecccccccccc-----ccceeEeecccccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCcc
Q 035621          249 GLLKYQSRQQMH-----KGQELVTLANRHDGVVVSVMMMNEGK-NLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       249 ~d~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~  306 (387)
                      ||+.........     ....+.....+|...|++++|+|+++ +|++++.||.|++|++....
T Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             EeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence            999873221110     01134444568899999999999999 89999999999999998653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=3.2e-34  Score=253.28  Aligned_cols=277  Identities=12%  Similarity=0.155  Sum_probs=230.2

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCee
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVA   87 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~   87 (387)
                      +.++++++.|+.|++||+.+++.+..+..|.. +.+++|+|++...   +++++.|+.|++||+.+++.+..+.....+.
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l---~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~   77 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKV---YVANAHSNDVSIIDTATNNVIATVPAGSSPQ   77 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEE---EEEEGGGTEEEEEETTTTEEEEEEECSSSEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEE---EEECCCCCeEEEEECCCCeEEEEEECCCCcc
Confidence            35788999999999999999999998887754 8999999976432   1236789999999999999988888888999


Q ss_pred             eEEeccCCCEEEE-ecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCcccccCCCCC
Q 035621           88 PLATTADGSYLFT-GGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLL-ISGGDDGVIATVPIFQLVDEHTDDK  165 (387)
Q Consensus        88 ~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~  165 (387)
                      +++|+|++++|++ ++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.|+.|++||+           
T Consensus        78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~-----------  145 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINT-----------  145 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEET-----------
T ss_pred             ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEEC-----------
Confidence            9999999998865 456799999999999988887654 578999999999977 68888999999999           


Q ss_pred             CCCccceEeeeccCCCeEEEEEeeCCCCceE-EEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc---
Q 035621          166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSII-ISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG---  241 (387)
Q Consensus       166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---  241 (387)
                       ........+..+ ..+.+++|+|++  +.+ ++++.++.|++||+++++....+.+...+.+++|+|+++++++++   
T Consensus       146 -~~~~~~~~~~~~-~~~~~~~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~  221 (391)
T 1l0q_A          146 -VTKAVINTVSVG-RSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK  221 (391)
T ss_dssp             -TTTEEEEEEECC-SSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS
T ss_pred             -CCCcEEEEEecC-CCcceEEECCCC--CEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCc
Confidence             445555666554 456899999885  555 778889999999999999999888888999999999999999988   


Q ss_pred             cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEE-EEEeCCCcEEEEECCCccEEEEeecc
Q 035621          242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNL-VSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       242 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      .++.|++||+....        .... ...| ..+.+++|+|++++| ++++.|+.|++||+.+++++..+..+
T Consensus       222 ~~~~v~~~d~~~~~--------~~~~-~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~  285 (391)
T 1l0q_A          222 YFNTVSMIDTGTNK--------ITAR-IPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG  285 (391)
T ss_dssp             SCCEEEEEETTTTE--------EEEE-EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred             CCCcEEEEECCCCe--------EEEE-EecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence            68999999998732        2222 2233 357899999999977 67788999999999999999888755

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-36  Score=274.11  Aligned_cols=251  Identities=10%  Similarity=0.104  Sum_probs=194.0

Q ss_pred             eccCCCCCceeEEEcCcc---------ceeee---------------ccccCCCCCeEEEEEccCCCcc----cccC-CC
Q 035621           33 HFSGSRSPRRGLTFAGKP---------FIAAS---------------HISPTTGSGSVHLYNLWSSTPL----HNIP-VP   83 (387)
Q Consensus        33 ~~~~~~~~v~~~~~~~~~---------~~~~~---------------~~~~~~~d~~v~vw~~~~~~~~----~~~~-~~   83 (387)
                      .+. +.+.|.+++|+|+.         .+++.               .+++++.|++|+||++.+++..    ..+. +.
T Consensus       129 ~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~  207 (524)
T 2j04_B          129 IYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF  207 (524)
T ss_dssp             EEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECC
T ss_pred             EEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecC
Confidence            444 56789999999864         33332               3677899999999999887643    2233 45


Q ss_pred             CCeeeEEeccC------CCEEEEecCCCcEEEEeCCCCce-----------eEEccCCCCCeEEEEEcCCCCEEEEEeCC
Q 035621           84 EPVAPLATTAD------GSYLFTGGLSGNVYAISVPKGDI-----------LRSFSAHDKPVSCLKISPDGSLLISGGDD  146 (387)
Q Consensus        84 ~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  146 (387)
                      +.|.+++|+|+      +.+||+++.||+|++||+.+++.           ...+.+|...|++++|+|+ ..|++|+.|
T Consensus       208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~D  286 (524)
T 2j04_B          208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKN  286 (524)
T ss_dssp             CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETT
T ss_pred             CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCC
Confidence            78999999996      57999999999999999976642           2367789999999999986 489999999


Q ss_pred             CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCC-ceEEEEeCCCcEEEEeCCCCcEEEEEe-cC--
Q 035621          147 GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFN-SIIISCSMDCTCKFWRLLNGTHLSTVT-FP--  222 (387)
Q Consensus       147 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~--  222 (387)
                      |+|++||+..           ...+...+.+|...|.++++...+++ .+|++++.|++|++||+++++++..+. +.  
T Consensus       287 gtV~lWD~~~-----------~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~  355 (524)
T 2j04_B          287 GFVAEFDLTD-----------PEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG  355 (524)
T ss_dssp             SEEEEEETTB-----------CSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred             CEEEEEECCC-----------CCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence            9999999942           12345567899999999954322334 799999999999999999887765554 32  


Q ss_pred             CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621          223 CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       223 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  302 (387)
                      ..+.+++|+|+++.+++++.|+.|++||++..        ..+.. +.+|.+.|++++|+|++++|++|+.||+|++||+
T Consensus       356 ~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~--------~~~~~-l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          356 SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA--------FAVHP-LVSRETTITAIGVSRLHPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             CSCCCEEEETTTTEEEEECSSSEEEEEETTCT--------TCCEE-EEECSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred             CcccceEeCCCcCeEEEeCCCCcEEEEECccc--------cccee-eecCCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence            35889999999999999999999999999873        22222 3479999999999999999999999999999998


Q ss_pred             CCc
Q 035621          303 EKR  305 (387)
Q Consensus       303 ~~~  305 (387)
                      ..+
T Consensus       427 ~~~  429 (524)
T 2j04_B          427 ARR  429 (524)
T ss_dssp             CSS
T ss_pred             hHh
Confidence            654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-34  Score=256.13  Aligned_cols=259  Identities=18%  Similarity=0.202  Sum_probs=215.0

Q ss_pred             CCCCC--ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--CCCCeeeEEeccCCCEEEEecCCCcEEEEe
Q 035621           36 GSRSP--RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPVAPLATTADGSYLFTGGLSGNVYAIS  111 (387)
Q Consensus        36 ~~~~~--v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  111 (387)
                      +|...  +.++.|+++.      +++++.|+.|++||+.+++....+.  +...|.+++|+|++++|++|+.||.|++||
T Consensus        89 ~~~~~~~~~~~~~s~~~------l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  162 (401)
T 4aez_A           89 GIIDDYYLNLLDWSNLN------VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD  162 (401)
T ss_dssp             TCCCCTTCBCEEECTTS------EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCcCCceEEEEeecCCC------EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence            44443  4456676643      3336789999999999998776655  578899999999999999999999999999


Q ss_pred             CCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC
Q 035621          112 VPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS  191 (387)
Q Consensus       112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  191 (387)
                      +.+++.+..+.+|...|.+++|  +++++++++.||.|++||++.           .......+..|...|.+++|+|++
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~  229 (401)
T 4aez_A          163 VESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRI-----------ANHQIGTLQGHSSEVCGLAWRSDG  229 (401)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS-----------SSCEEEEEECCSSCEEEEEECTTS
T ss_pred             CcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEeccc-----------CcceeeEEcCCCCCeeEEEEcCCC
Confidence            9999999999999999999999  457999999999999999932           345677888999999999999974


Q ss_pred             CCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEE-EEc--cCCcEEEEeccccccccccccceeEe
Q 035621          192 FNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFF-AAG--SDGLIYKGLLKYQSRQQMHKGQELVT  267 (387)
Q Consensus       192 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~  267 (387)
                        .+|++++.|+.|++||+++++.+..+. +...|.+++|+|++..++ +++  .|+.|++||+.++.        ....
T Consensus       230 --~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~--------~~~~  299 (401)
T 4aez_A          230 --LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA--------RVNT  299 (401)
T ss_dssp             --SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC--------EEEE
T ss_pred             --CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC--------EEEE
Confidence              899999999999999999999988886 778999999999875554 443  69999999998732        2222


Q ss_pred             ecccccccEEEEEEecCCCEEEE--EeCCCcEEEEECCCccEEEE--eecccCCCceeEEEEe
Q 035621          268 LANRHDGVVVSVMMMNEGKNLVS--AAEDGSVYIWEIEKRQVVMV--LKNELAGSISEMVIAT  326 (387)
Q Consensus       268 ~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~  326 (387)
                      +  .+...|.+++|+|++++|++  |+.||.|++||+.+++....  +..| .+.|.++.|++
T Consensus       300 ~--~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~  359 (401)
T 4aez_A          300 V--DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSP  359 (401)
T ss_dssp             E--ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECT
T ss_pred             E--eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECC
Confidence            2  36778999999999999998  45899999999999766654  4455 45888887765

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.9e-35  Score=260.40  Aligned_cols=304  Identities=12%  Similarity=0.100  Sum_probs=239.4

Q ss_pred             CCCcEEEEeCCCCceeEeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCCCcccccC-------------
Q 035621           16 PEGPITAYNPSSGAILAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-------------   81 (387)
Q Consensus        16 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-------------   81 (387)
                      .++.+++|+...++....+.+|.++|++++|+| ++.+++    +++.||.|++||+.+++....+.             
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~----~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   96 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYML----SGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPD   96 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEE----EEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTT
T ss_pred             ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEE----EEcCCCeEEEEECCCCcccceEeccccccccccccc
Confidence            345688899988888889999999999999999 765544    48899999999999887766554             


Q ss_pred             -CCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCc
Q 035621           82 -VPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD---GSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        82 -~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~  156 (387)
                       |...|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.++|.   +.++++++.|+.|++||+  
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~--  173 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL--  173 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES--
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC--
Confidence             778999999999 78899999999999999999999888776 7788999999984   449999999999999999  


Q ss_pred             ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc-EEEEE----------------
Q 035621          157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT-HLSTV----------------  219 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~----------------  219 (387)
                                .....+..+..|...|.+++|+|++ ..++++++.||.|++||++++. ++..+                
T Consensus       174 ----------~~~~~~~~~~~~~~~v~~~~~~~~~-~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
T 4a11_B          174 ----------KSGSCSHILQGHRQEILAVSWSPRY-DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT  242 (408)
T ss_dssp             ----------SSSCCCEEECCCCSCEEEEEECSSC-TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC
T ss_pred             ----------CCcceeeeecCCCCcEEEEEECCCC-CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc
Confidence                      4556778888999999999999986 2369999999999999998765 33333                


Q ss_pred             ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEE
Q 035621          220 TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYI  299 (387)
Q Consensus       220 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  299 (387)
                      .+...|.+++|+|++++|++++.||.|++||+..............    ......+........+..+++++.|+.|++
T Consensus       243 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  318 (408)
T 4a11_B          243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC----NNSKKGLKFTVSCGCSSEFVFVPYGSTIAV  318 (408)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC----CCCSSCCCCEECCSSSSCEEEEEETTEEEE
T ss_pred             cccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc----ccccccceeEEecCCCceEEEEecCCEEEE
Confidence            2567899999999999999999999999999988554322211111    011112222222334556777788999999


Q ss_pred             EECCCccEEEEeecccCCCceeEEEEecC--------CCceeeEEEecCCC
Q 035621          300 WEIEKRQVVMVLKNELAGSISEMVIATGI--------GGSRGCGVVKTGKA  342 (387)
Q Consensus       300 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~~~  342 (387)
                      ||+.+++++..+.+|. +.|+++.|++..        ++.+.+|...++..
T Consensus       319 ~d~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          319 YTVYSGEQITMLKGHY-KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             EETTTCCEEEEECCCS-SCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred             EECcCCcceeeeccCC-CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence            9999999999998774 589888776532        44456666665543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.9e-34  Score=255.76  Aligned_cols=255  Identities=20%  Similarity=0.231  Sum_probs=211.4

Q ss_pred             ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce
Q 035621           41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI  117 (387)
Q Consensus        41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  117 (387)
                      ++.|+|+++..+.      .+.|++|+|||..+++....+.   |...|++++|+|+|++|++|+.||.|++||++++++
T Consensus       108 ~~~l~wS~~n~lA------vgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          108 LNLVDWSSGNVLA------VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             CBCEEECTTSEEE------EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             ceeEEECCCCEEE------EEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE
Confidence            5668888754332      3459999999999998877654   556799999999999999999999999999999999


Q ss_pred             eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE
Q 035621          118 LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII  197 (387)
Q Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  197 (387)
                      +..+.+|...+.++.++  +.++++|+.|+.+++||...           ....+..+.+|...+..+.+.|++  .+++
T Consensus       182 ~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~-----------~~~~~~~~~~h~~~~~~~~~~~~g--~~l~  246 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV-----------AEHHVATLSGHSQEVCGLRWAPDG--RHLA  246 (420)
T ss_dssp             EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS-----------SSCEEEEEECCSSCEEEEEECTTS--SEEE
T ss_pred             EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecc-----------cceeeEEecccccceeeeeecCCC--Ceee
Confidence            99999999999998874  67999999999999999842           345667788999999999999885  8999


Q ss_pred             EEeCCCcEEEEeCCCCcE----EEEE-ecCCceeEEEeCCCCCeE-EE--EccCCcEEEEeccccccccccccceeEeec
Q 035621          198 SCSMDCTCKFWRLLNGTH----LSTV-TFPCAIMGLALDPTETDF-FA--AGSDGLIYKGLLKYQSRQQMHKGQELVTLA  269 (387)
Q Consensus       198 s~~~d~~i~iwd~~~~~~----~~~~-~~~~~v~~~~~~~~~~~l-~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  269 (387)
                      +++.|+.+++||..+++.    +... .+...|.+++|+|.+..+ ++  |+.|+.|++||+.++.        ..... 
T Consensus       247 s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~--------~~~~~-  317 (420)
T 4gga_A          247 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--------CLSAV-  317 (420)
T ss_dssp             EEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE--------EEEEE-
T ss_pred             eeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc--------cceee-
Confidence            999999999999987653    2333 367899999999987544 44  3569999999998732        22222 


Q ss_pred             ccccccEEEEEEecCCCEEEEEe--CCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          270 NRHDGVVVSVMMMNEGKNLVSAA--EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       270 ~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                       .+...+.++.|+|+++.+++++  .|+.|+|||+.+++++..+.+|. +.|++++|++.
T Consensus       318 -~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~-~~V~~l~~spd  375 (420)
T 4gga_A          318 -DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT-SRVLSLTMSPD  375 (420)
T ss_dssp             -ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS-SCEEEEEECTT
T ss_pred             -ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC-CCEEEEEEcCC
Confidence             3456789999999999888765  79999999999999999999875 58999988763

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.4e-34  Score=255.82  Aligned_cols=274  Identities=10%  Similarity=0.089  Sum_probs=227.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeE-----eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILA-----HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP   76 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~   76 (387)
                      ++|+|++.++++++.++.|++||+.+++...     .+.+|...|.+++|++++.+.    ++++.|+.|++||+.+++.
T Consensus       128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~s~~~d~~v~~~d~~~~~~  203 (433)
T 3bws_A          128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELW----VSQMQANAVHVFDLKTLAY  203 (433)
T ss_dssp             CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEE----EEEGGGTEEEEEETTTCCE
T ss_pred             EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEE----EEECCCCEEEEEECCCceE
Confidence            5789988899999999999999999998887     556889999999999865444    4478999999999999888


Q ss_pred             ccccC-CCCCeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe--------CC
Q 035621           77 LHNIP-VPEPVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG--------DD  146 (387)
Q Consensus        77 ~~~~~-~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d  146 (387)
                      +..+. +...+.+++|+|++++++ +++.++.|++||+++++.+..+..+ ..+.+++|+|+++++++++        .|
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~d  282 (433)
T 3bws_A          204 KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGG  282 (433)
T ss_dssp             EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred             EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCC
Confidence            87775 567899999999999885 4557899999999999988888754 5699999999999999888        58


Q ss_pred             CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCcee
Q 035621          147 GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIM  226 (387)
Q Consensus       147 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~  226 (387)
                      +.|++||+            ........ ..|...+.+++|+|++ ..++++++.|+.|++||+.+++.+..+.+...+.
T Consensus       283 g~i~~~d~------------~~~~~~~~-~~~~~~~~~~~~~~~g-~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~  348 (433)
T 3bws_A          283 GRLGIYSM------------DKEKLIDT-IGPPGNKRHIVSGNTE-NKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPN  348 (433)
T ss_dssp             EEEEEEET------------TTTEEEEE-EEEEECEEEEEECSST-TEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE
T ss_pred             CeEEEEEC------------CCCcEEee-ccCCCCcceEEECCCC-CEEEEEecCCCEEEEEECCCCcEEEEecCCCCCC
Confidence            89999999            33333333 3566688899999885 3466777899999999999999999998888999


Q ss_pred             EEEeCCCCCeEEEEcc---------------CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621          227 GLALDPTETDFFAAGS---------------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA  291 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  291 (387)
                      +++|+|+++++++++.               ||.|++||..+..        ....+  .+...+.+++|+|+|++|+++
T Consensus       349 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~--------~~~~~--~~~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT--------VKEFW--EAGNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE--------EEEEE--ECSSSEEEEEECTTSCEEEEE
T ss_pred             eEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc--------EEEEe--cCCCCCceEEEcCCCCEEEEE
Confidence            9999999999988876               4799999998732        22222  234578999999999999887


Q ss_pred             eC-CCcEEEEECCC
Q 035621          292 AE-DGSVYIWEIEK  304 (387)
Q Consensus       292 ~~-dg~i~iwd~~~  304 (387)
                      +. |+.|++|+++.
T Consensus       419 ~~~d~~i~v~~~~~  432 (433)
T 3bws_A          419 DFLDHQIRVYRRDG  432 (433)
T ss_dssp             ETTTTEEEEEEETT
T ss_pred             ECCCCeEEEEEecC
Confidence            75 99999999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-35  Score=256.59  Aligned_cols=243  Identities=14%  Similarity=0.199  Sum_probs=203.6

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCC--CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--cc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPS--SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PL   77 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~   77 (387)
                      ++|+|++++|++|+.||.|+|||+.  +++.+..+.+|..+|++++|+++.  ....+++++.||.|++||+.+++  ..
T Consensus        17 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~   94 (379)
T 3jrp_A           17 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYDGKVLIWKEENGRWSQI   94 (379)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG--GCSEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             EEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC--CCCEEEEeccCCEEEEEEcCCCceeEe
Confidence            5799999999999999999999997  667788899999999999998741  12345558999999999999886  44


Q ss_pred             cccC-CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCCc--eeEEccCCCCCeEEEEEcC-------------CCCE
Q 035621           78 HNIP-VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKGD--ILRSFSAHDKPVSCLKISP-------------DGSL  139 (387)
Q Consensus        78 ~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~  139 (387)
                      ..+. +...|.+++|+|+  +.+|++++.|+.|++||++++.  ....+..|...|.+++|+|             ++.+
T Consensus        95 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  174 (379)
T 3jrp_A           95 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK  174 (379)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCE
T ss_pred             eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCE
Confidence            4444 7789999999999  9999999999999999998873  3445678999999999999             6999


Q ss_pred             EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCC-CceEEEEeCCCcEEEEeCCCCc---E
Q 035621          140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF-NSIIISCSMDCTCKFWRLLNGT---H  215 (387)
Q Consensus       140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~---~  215 (387)
                      +++++.||.|++||++...        ........+..|...|.+++|+|+.. +.+|++++.||.|++||++++.   .
T Consensus       175 l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  246 (379)
T 3jrp_A          175 FVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK  246 (379)
T ss_dssp             EEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE
T ss_pred             EEEEeCCCeEEEEEecCCC--------cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccce
Confidence            9999999999999984210        12235567788999999999999821 3899999999999999999874   2


Q ss_pred             EEEEe---cCCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621          216 LSTVT---FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       216 ~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  254 (387)
                      ...+.   +...+.+++|+|++++|++++.||.|++|++...
T Consensus       247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          247 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            22222   5678999999999999999999999999999863

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.1e-35  Score=263.01  Aligned_cols=246  Identities=10%  Similarity=0.059  Sum_probs=196.6

Q ss_pred             CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC-----------cccccC-CC------------CCeeeEEec
Q 035621           37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST-----------PLHNIP-VP------------EPVAPLATT   92 (387)
Q Consensus        37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~-----------~~~~~~-~~------------~~v~~~~~~   92 (387)
                      +.+.|.+++|+|++.+    +++++.||.|++||+.+++           ....+. |.            ..|.+++|+
T Consensus        27 ~~~~V~~v~~s~~g~~----la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           27 EADIISTVEFNHSGEL----LATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             GGGSEEEEEECSSSSE----EEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             ccCcEEEEEECCCCCE----EEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence            6778999999996544    4458999999999998776           233333 55            779999999


Q ss_pred             cCC--CEEEEecCCCcEEEEeCCCCcee---------------------------------------EE-ccCCCCCeEE
Q 035621           93 ADG--SYLFTGGLSGNVYAISVPKGDIL---------------------------------------RS-FSAHDKPVSC  130 (387)
Q Consensus        93 ~~~--~~l~~~~~dg~i~i~d~~~~~~~---------------------------------------~~-~~~~~~~v~~  130 (387)
                      |++  .+|++++.|+.|++||+.+++..                                       .. ..+|...|.+
T Consensus       103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  182 (447)
T 3dw8_B          103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS  182 (447)
T ss_dssp             CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred             CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence            998  79999999999999998764432                                       12 3679999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceE-------eeeccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621          131 LKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQ-------KFVAHNDSVTAITCCIGSFNSIIISCSMDC  203 (387)
Q Consensus       131 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~  203 (387)
                      ++|+|++++|+++ .|+.|++||+..           ......       .+..|...|.+++|+|++ .++|++++.||
T Consensus       183 ~~~~~~~~~l~s~-~d~~i~iwd~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~s~~~dg  249 (447)
T 3dw8_B          183 ISINSDYETYLSA-DDLRINLWHLEI-----------TDRSFNIVDIKPANMEELTEVITAAEFHPNS-CNTFVYSSSKG  249 (447)
T ss_dssp             EEECTTSSEEEEE-CSSEEEEEETTE-----------EEEEEEEEECCCSSGGGCCCCEEEEEECSSC-TTEEEEEETTS
T ss_pred             EEEcCCCCEEEEe-CCCeEEEEECCC-----------CCceeeeeecccccccccCcceEEEEECCCC-CcEEEEEeCCC
Confidence            9999999999998 799999999942           112222       356899999999999884 37999999999


Q ss_pred             cEEEEeCCCCcE----EEEEecC-C------------ceeEEEeCCCCCeEEEEccCCcEEEEeccc-ccccccccccee
Q 035621          204 TCKFWRLLNGTH----LSTVTFP-C------------AIMGLALDPTETDFFAAGSDGLIYKGLLKY-QSRQQMHKGQEL  265 (387)
Q Consensus       204 ~i~iwd~~~~~~----~~~~~~~-~------------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~  265 (387)
                      .|++||+++++.    ...+..+ .            .|.+++|+|++++|++++. +.|++||++. ....        
T Consensus       250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~--------  320 (447)
T 3dw8_B          250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV--------  320 (447)
T ss_dssp             CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS--------
T ss_pred             eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc--------
Confidence            999999999886    6677643 2            8999999999999999998 9999999986 2221        


Q ss_pred             Eeecccccc---------------cEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEE
Q 035621          266 VTLANRHDG---------------VVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVM  309 (387)
Q Consensus       266 ~~~~~~~~~---------------~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  309 (387)
                       ..+..|..               .+..++|+|++++|++|+.||.|++||+.+++.+.
T Consensus       321 -~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          321 -ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             -CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             -ceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence             11223432               13459999999999999999999999999998874

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=7.5e-35  Score=252.85  Aligned_cols=239  Identities=15%  Similarity=0.126  Sum_probs=200.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCC----ceeEeccCCCCCceeEEEcCc--cceeeeccccCCCCCeEEEEEccCCC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSG----AILAHFSGSRSPRRGLTFAGK--PFIAASHISPTTGSGSVHLYNLWSST   75 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~d~~v~vw~~~~~~   75 (387)
                      ++|+|++++|++|+.||.|++||+.++    +....+.+|..+|.+++|+|.  ..    .+++++.||.|++||+.+++
T Consensus        17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~----~l~s~~~dg~v~vwd~~~~~   92 (351)
T 3f3f_A           17 VVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR----IIASASYDKTVKLWEEDPDQ   92 (351)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS----EEEEEETTSCEEEEEECTTS
T ss_pred             EEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC----EEEEEcCCCeEEEEecCCCc
Confidence            679999999999999999999999876    467778899999999999982  33    34458999999999998874


Q ss_pred             ---------cccccC-CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCCceeEEcc-------------CCCCCeEE
Q 035621           76 ---------PLHNIP-VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKGDILRSFS-------------AHDKPVSC  130 (387)
Q Consensus        76 ---------~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~~~~v~~  130 (387)
                               ....+. +...|.+++|+|+  +++|++++.||.|++||+++++.+..+.             .|...+.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (351)
T 3f3f_A           93 EECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC  172 (351)
T ss_dssp             CTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred             ccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeE
Confidence                     233333 6789999999999  9999999999999999998887544332             57889999


Q ss_pred             EEEcCC---CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCC--ceEEEEeCCCcE
Q 035621          131 LKISPD---GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFN--SIIISCSMDCTC  205 (387)
Q Consensus       131 ~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~l~s~~~d~~i  205 (387)
                      ++|+|+   +.++++++.|+.+.+|+...          ........+.+|...|.+++|+|++..  ++|++++.||.|
T Consensus       173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i  242 (351)
T 3f3f_A          173 LSWCPSRFSPEKLAVSALEQAIIYQRGKD----------GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI  242 (351)
T ss_dssp             EEECCCSSSCCEEEEEETTEEEEEEECTT----------SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred             EEeccCCCCCcEEEEecCCCcEEEEccCC----------CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence            999997   89999999999998877622          122346778889999999999998522  799999999999


Q ss_pred             EEEeCCCC----------------------------------------------cEEEEEe-cCCceeEEEeCCCCCeEE
Q 035621          206 KFWRLLNG----------------------------------------------THLSTVT-FPCAIMGLALDPTETDFF  238 (387)
Q Consensus       206 ~iwd~~~~----------------------------------------------~~~~~~~-~~~~v~~~~~~~~~~~l~  238 (387)
                      ++||++++                                              +.+..+. |...|++++|+|++++|+
T Consensus       243 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~  322 (351)
T 3f3f_A          243 RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS  322 (351)
T ss_dssp             EEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE
T ss_pred             EEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE
Confidence            99999875                                              3444454 678899999999999999


Q ss_pred             EEccCCcEEEEecccc
Q 035621          239 AAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       239 ~~~~dg~i~i~d~~~~  254 (387)
                      +++.||.|++|++..+
T Consensus       323 s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          323 SAGDDGKVRLWKATYS  338 (351)
T ss_dssp             EEETTSCEEEEEECTT
T ss_pred             EecCCCcEEEEecCcC
Confidence            9999999999999873

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.4e-34  Score=249.46  Aligned_cols=283  Identities=12%  Similarity=0.124  Sum_probs=222.5

Q ss_pred             EEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CCcc-cccC-CCCCeeeEEeccCCCEE
Q 035621           22 AYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-STPL-HNIP-VPEPVAPLATTADGSYL   98 (387)
Q Consensus        22 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~~-~~~~-~~~~v~~~~~~~~~~~l   98 (387)
                      .++....+.+..+.+|.+.|++++|+|+.. ....+++++.||.|++||+.+ +..+ ..+. |...|.+++|+|++++|
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  101 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTL-PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV  101 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCTTS-SSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCCCC-CceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEE
Confidence            345566778888999999999999999620 023444589999999999987 4443 3333 78899999999999999


Q ss_pred             EEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEE--cCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee
Q 035621           99 FTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKI--SPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV  176 (387)
Q Consensus        99 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  176 (387)
                      ++++.||.|++||+++++.+. +..|...|++++|  +|++++|++++.||.|++||+            .....+..+.
T Consensus       102 ~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~------------~~~~~~~~~~  168 (368)
T 3mmy_A          102 FTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT------------RSSNPMMVLQ  168 (368)
T ss_dssp             EEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS------------SCSSCSEEEE
T ss_pred             EEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC------------CCCcEEEEEe
Confidence            999999999999999988766 4569999999999  899999999999999999999            4455666666


Q ss_pred             ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceeEEEeCCCCCe----EEEEccCCcEEEE
Q 035621          177 AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT---FPCAIMGLALDPTETD----FFAAGSDGLIYKG  249 (387)
Q Consensus       177 ~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~----l~~~~~dg~i~i~  249 (387)
                      .+. .+.++.+.+    ..+++++.++.+++|+++.........   ......++++.++...    +++++.||.|++|
T Consensus       169 ~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~  243 (368)
T 3mmy_A          169 LPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH  243 (368)
T ss_dssp             CSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred             cCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence            554 555555542    578888899999999998876544332   3455666766666554    9999999999999


Q ss_pred             eccccccccccccceeEeeccccc------------ccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCC
Q 035621          250 LLKYQSRQQMHKGQELVTLANRHD------------GVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAG  317 (387)
Q Consensus       250 d~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  317 (387)
                      ++......      .....+..|.            ..|++++|+|++++|++++.||.|++||+.+++++..+..| .+
T Consensus       244 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~  316 (368)
T 3mmy_A          244 YINPPNPA------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-DQ  316 (368)
T ss_dssp             ESSCSCHH------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SS
T ss_pred             ecCCCCcc------ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC-CC
Confidence            99875321      1111112333            37999999999999999999999999999999999999876 45


Q ss_pred             CceeEEEEecCCC
Q 035621          318 SISEMVIATGIGG  330 (387)
Q Consensus       318 ~v~~~~~~~~~~~  330 (387)
                      .|++++|++...-
T Consensus       317 ~v~~~~~s~~g~~  329 (368)
T 3mmy_A          317 PISACCFNHNGNI  329 (368)
T ss_dssp             CEEEEEECTTSSC
T ss_pred             CceEEEECCCCCe
Confidence            9999999875543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-35  Score=280.09  Aligned_cols=258  Identities=13%  Similarity=0.162  Sum_probs=210.5

Q ss_pred             eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC--CCcccccC-CCCCeeeEEeccC--CCEEEEecCCC
Q 035621           31 LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS--STPLHNIP-VPEPVAPLATTAD--GSYLFTGGLSG  105 (387)
Q Consensus        31 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~--~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg  105 (387)
                      +..+.+|.++|++++|+|++.    .+++++.||.|++||+..  ++....+. |..+|.+++|+|+  +++|++|+.||
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~----~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg   77 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGK----RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   77 (753)
T ss_dssp             ------CCCCEEEECCCSSSC----CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred             eeecccCcceeEEEEECCCCC----eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence            346789999999999999654    455589999999999984  44555554 7789999999988  99999999999


Q ss_pred             cEEEEeCCCCc--eeEEccCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCC
Q 035621          106 NVYAISVPKGD--ILRSFSAHDKPVSCLKISPD--GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDS  181 (387)
Q Consensus       106 ~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (387)
                      .|++||+.+++  .+..+..|...|++++|+|+  ++++++++.||.|++||++..          .......+..|...
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~----------~~~~~~~~~~~~~~  147 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN----------GTTSPIIIDAHAIG  147 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS----------SCCCCEEEECCSSC
T ss_pred             eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC----------CCcceeEeecCCCc
Confidence            99999999886  67778889999999999999  999999999999999999531          22345567789999


Q ss_pred             eEEEEEeeCC-----------CCceEEEEeCCCcEEEEeCCCCc----EEEEEe-cCCceeEEEeCCC---CCeEEEEcc
Q 035621          182 VTAITCCIGS-----------FNSIIISCSMDCTCKFWRLLNGT----HLSTVT-FPCAIMGLALDPT---ETDFFAAGS  242 (387)
Q Consensus       182 i~~~~~~~~~-----------~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~---~~~l~~~~~  242 (387)
                      |.+++|+|..           ++.++++|+.||.|++||++++.    ....+. |...|.+++|+|+   ++++++++.
T Consensus       148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~  227 (753)
T 3jro_A          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ  227 (753)
T ss_dssp             EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred             eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence            9999999841           35899999999999999998873    444444 6789999999999   899999999


Q ss_pred             CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621          243 DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       243 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  306 (387)
                      ||.|++||+........    ........|...|++++|+|++++|++|+.||.|++|++..+.
T Consensus       228 Dg~I~iwd~~~~~~~~~----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          228 DRTCIIWTQDNEQGPWK----KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SSCEEEEEESSSSSCCB----CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             CCEEEEecCCCCCCcce----eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            99999999987532111    1111223688899999999999999999999999999998643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.1e-33  Score=253.38  Aligned_cols=253  Identities=18%  Similarity=0.263  Sum_probs=214.3

Q ss_pred             cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCC
Q 035621           35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVP  113 (387)
Q Consensus        35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  113 (387)
                      .+|...|.++.+..+      .+++++.||.|++||+.+++....+. |...|.+++|  ++++|++|+.||.|++||+.
T Consensus       130 ~~~~~~v~~~~~d~~------~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          130 SETSKGVYCLQYDDQ------KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             CSSCCCEEEEECCSS------EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             cCCCCcEEEEEECCC------EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence            456677998888542      34458899999999999998888776 7788999998  78899999999999999999


Q ss_pred             CCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCC
Q 035621          114 KGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFN  193 (387)
Q Consensus       114 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  193 (387)
                      +++.+..+..|...|.+++|++  .++++++.||.|++||+...         ........+.+|...|.++++  +  +
T Consensus       202 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~---------~~~~~~~~~~~~~~~v~~~~~--~--~  266 (435)
T 1p22_A          202 TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASP---------TDITLRRVLVGHRAAVNVVDF--D--D  266 (435)
T ss_dssp             SCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSS---------SCCEEEEEECCCSSCEEEEEE--E--T
T ss_pred             CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCC---------CCceeeeEecCCCCcEEEEEe--C--C
Confidence            9999999999999999999974  59999999999999999431         111223667889999999998  3  4


Q ss_pred             ceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccc
Q 035621          194 SIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH  272 (387)
Q Consensus       194 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  272 (387)
                      +++++++.||.|++||+++++.+..+. +...+.++++  +++++++|+.||.|++||++++         .....+.+|
T Consensus       267 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~---------~~~~~~~~h  335 (435)
T 1p22_A          267 KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---------ACLRVLEGH  335 (435)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---------CEEEEECCC
T ss_pred             CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC---------CEEEEEeCC
Confidence            799999999999999999999999888 6788999998  4689999999999999999873         223334579


Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc---------EEEEeecccCCCceeEEE
Q 035621          273 DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ---------VVMVLKNELAGSISEMVI  324 (387)
Q Consensus       273 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~  324 (387)
                      ...|.+++|  ++.+|++|+.||.|++||+.+++         ++..+..|. +.|+++.|
T Consensus       336 ~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~  393 (435)
T 1p22_A          336 EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS-GRVFRLQF  393 (435)
T ss_dssp             SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS-SCCCCEEE
T ss_pred             cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC-CCeEEEEe
Confidence            999999999  78899999999999999998877         788887764 48888865

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3e-34  Score=250.38  Aligned_cols=239  Identities=13%  Similarity=0.096  Sum_probs=192.1

Q ss_pred             ccccCCCcEEEee-----------CCCCcEEEEeCCCCcee----Eec-----cCCCCCceeEEEcCccceeeeccccCC
Q 035621            2 LHHLPCNEVILTS-----------SPEGPITAYNPSSGAIL----AHF-----SGSRSPRRGLTFAGKPFIAASHISPTT   61 (387)
Q Consensus         2 l~~s~~~~~l~~~-----------~~dg~i~iwd~~~~~~~----~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~   61 (387)
                      ++++++++.+++|           +.|+.+++|++.+....    ...     ..+...+.+++|+|++.+.+  +++++
T Consensus        77 ~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la--~as~~  154 (365)
T 4h5i_A           77 TAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA--IASSK  154 (365)
T ss_dssp             CEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE--EEESC
T ss_pred             EEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE--EEECC
Confidence            4567777777665           45788999998654321    111     22344588999999776542  23477


Q ss_pred             CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE--EccCCCCCeEEEEEcCCCCE
Q 035621           62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR--SFSAHDKPVSCLKISPDGSL  139 (387)
Q Consensus        62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~  139 (387)
                      .|++|++||+.+++++..+.+...|.+++|+|+|+++++++.+ .+.+|+..+++.+.  ....|...|.+++|+|++++
T Consensus       155 ~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~  233 (365)
T 4h5i_A          155 VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV  233 (365)
T ss_dssp             SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE
T ss_pred             CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE
Confidence            8999999999999999999999999999999999999999855 57777777776654  34568889999999999999


Q ss_pred             EEEEeCCC----cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE
Q 035621          140 LISGGDDG----VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH  215 (387)
Q Consensus       140 l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  215 (387)
                      +++++.|+    .++.|++....        ........+..|..+|++++|+|++  ++|++|+.|++|+|||++++++
T Consensus       234 l~~~s~d~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~V~~~~~Spdg--~~lasgs~D~~V~iwd~~~~~~  303 (365)
T 4h5i_A          234 LIAASLKKGKGIVLTKISIKSGN--------TSVLRSKQVTNRFKGITSMDVDMKG--ELAVLASNDNSIALVKLKDLSM  303 (365)
T ss_dssp             EEEEEESSSCCEEEEEEEEETTE--------EEEEEEEEEESSCSCEEEEEECTTS--CEEEEEETTSCEEEEETTTTEE
T ss_pred             EEEEecCCcceeEEeecccccce--------ecceeeeeecCCCCCeEeEEECCCC--CceEEEcCCCEEEEEECCCCcE
Confidence            99999887    57888873210        1112345677899999999999985  9999999999999999999999


Q ss_pred             EEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621          216 LSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       216 ~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                      +..+.  |...|++++|+|||++|++++.|++|+||++..
T Consensus       304 ~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          304 SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            98874  788999999999999999999999999999965

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-33  Score=252.58  Aligned_cols=271  Identities=11%  Similarity=0.089  Sum_probs=215.0

Q ss_pred             CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC---cccccC----------------------------------
Q 035621           39 SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST---PLHNIP----------------------------------   81 (387)
Q Consensus        39 ~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~---~~~~~~----------------------------------   81 (387)
                      .++.+++|++++.++.     ++.++.|++||+.+++   .+..+.                                  
T Consensus         5 ~p~~~v~~s~dg~~l~-----~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVF-----AIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN   79 (450)
T ss_dssp             CCCCEEEECSSSSEEE-----EEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred             ccEEEEEecCCCCEEE-----EEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence            5689999999765443     3468899999999888   433322                                  


Q ss_pred             ---------------------CCCCeeeEEeccCCCEE-EEecCCCcEEEEeCC--CCceeEEcc--CCCCCeEEEEEcC
Q 035621           82 ---------------------VPEPVAPLATTADGSYL-FTGGLSGNVYAISVP--KGDILRSFS--AHDKPVSCLKISP  135 (387)
Q Consensus        82 ---------------------~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~--~~~~~v~~~~~~~  135 (387)
                                           +...|.+++|+|++++| ++++.||.|++||+.  +++.+..+.  .|...|++++|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp  159 (450)
T 2vdu_B           80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE  159 (450)
T ss_dssp             --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred             cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence                                 12259999999999996 899999999999999  888888876  5678999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCcc-ceEeeeccCCCeEEEEEeeC-CCCceEEEEeCCCcEEEEeCCCC
Q 035621          136 DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDL-MLQKFVAHNDSVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNG  213 (387)
Q Consensus       136 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~  213 (387)
                      ++++|++++.+|.+++|++....         ... ....+.+|...|.+++|+|+ ..+.+|++++.|+.|++||++++
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~---------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~  230 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIP---------EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC  230 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCC---------CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred             CCCEEEEEeCCCcEEEEecCCcc---------cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence            99999999999999999984321         111 33467789999999999998 11389999999999999999999


Q ss_pred             cEEEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccccee----------------Eeeccccccc
Q 035621          214 THLSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQEL----------------VTLANRHDGV  275 (387)
Q Consensus       214 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------------~~~~~~~~~~  275 (387)
                      +.+..+.  |...|.+++|+ ++++|++++.|+.|++||+.++...........                ..........
T Consensus       231 ~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (450)
T 2vdu_B          231 FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA  309 (450)
T ss_dssp             TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred             ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence            9887754  77899999999 999999999999999999987543222110000                0000023457


Q ss_pred             EEEEEEecCCCEEEEEe-CCCcEEEEEC--CCc---cEEEEeecccCCCceeEEEEe
Q 035621          276 VVSVMMMNEGKNLVSAA-EDGSVYIWEI--EKR---QVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       276 v~~~~~s~~~~~l~s~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      |.+++|+|++++|++++ .|+.|++|++  .++   +.+..+..+  +.|.+++|.+
T Consensus       310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~  364 (450)
T 2vdu_B          310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHN  364 (450)
T ss_dssp             EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEET
T ss_pred             EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecC
Confidence            99999999999999998 8999999999  666   777777776  6899999987

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.5e-33  Score=237.05  Aligned_cols=254  Identities=19%  Similarity=0.218  Sum_probs=210.4

Q ss_pred             ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce
Q 035621           41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI  117 (387)
Q Consensus        41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  117 (387)
                      .++|+|+++..+.      .+.|++|++||+.+++++..+.   |...|.+++|+|++++|++|+.||.|++||++++++
T Consensus        28 ~~~l~WS~~~~lA------vg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           28 LNLVDWSSGNVLA------VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             CBCEEECTTSEEE------EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ceEEEECCCCEEE------EEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence            5789999876433      3469999999999999887664   556799999999999999999999999999999999


Q ss_pred             eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE
Q 035621          118 LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII  197 (387)
Q Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  197 (387)
                      +..+.+|...+.++.+  ++..+++++.++.+++|+..           .....+..+.+|...+..+.+.+.+  ++++
T Consensus       102 ~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~  166 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVR-----------VAEHHVATLSGHSQEVCGLRWAPDG--RHLA  166 (318)
T ss_dssp             EEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-----------SSSCEEEEEECCSSCEEEEEECTTS--SEEE
T ss_pred             EEEecCccceEEEeec--CCCEEEEEecCCceEeeecC-----------CCceeEEEEcCccCceEEEEEcCCC--CEEE
Confidence            9999999998887665  56799999999999999883           2345667788999999999998875  8999


Q ss_pred             EEeCCCcEEEEeCCCCcEE-----EEEecCCceeEEEeCCCCCeEE---EEccCCcEEEEeccccccccccccceeEeec
Q 035621          198 SCSMDCTCKFWRLLNGTHL-----STVTFPCAIMGLALDPTETDFF---AAGSDGLIYKGLLKYQSRQQMHKGQELVTLA  269 (387)
Q Consensus       198 s~~~d~~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~---~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  269 (387)
                      +++.|+.|++||+++++..     ....+...+.+++++|++..++   +++.++.|++||.....        ....  
T Consensus       167 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~--------~~~~--  236 (318)
T 4ggc_A          167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--------CLSA--  236 (318)
T ss_dssp             EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC--------EEEE--
T ss_pred             EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc--------cccc--
Confidence            9999999999999886532     2223667899999999876543   45678999999988732        2222  


Q ss_pred             ccccccEEEEEEecCCCEEEEEe--CCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          270 NRHDGVVVSVMMMNEGKNLVSAA--EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       270 ~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      ..+...+..+.|+|+++.+++++  .|+.|++||+.+++++..+.+|. +.|++++|++
T Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~-~~V~~l~~sp  294 (318)
T 4ggc_A          237 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT-SRVLSLTMSP  294 (318)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS-SCEEEEEECT
T ss_pred             ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC-CCEEEEEEcC
Confidence            25677899999999999887654  79999999999999999999875 5899998875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.9e-33  Score=249.15  Aligned_cols=238  Identities=16%  Similarity=0.215  Sum_probs=201.7

Q ss_pred             ccccCC-CcEEEeeCCCCcEEEEeCCC----------CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEE
Q 035621            2 LHHLPC-NEVILTSSPEGPITAYNPSS----------GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYN   70 (387)
Q Consensus         2 l~~s~~-~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~   70 (387)
                      ++|+|+ +.+||+++.+|.|++||+.+          .+.+..+.+|...|.+++|+|+..   ..+++++.||.|++|+
T Consensus       134 l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~---~~l~s~~~dg~i~vwd  210 (430)
T 2xyi_A          134 ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN---GYLLSASDDHTICLWD  210 (430)
T ss_dssp             EEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST---TEEEEECTTSCEEEEE
T ss_pred             EEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC---CeEEEEeCCCeEEEEe
Confidence            578997 78999999999999999976          577888899999999999999543   1345589999999999


Q ss_pred             ccCCCc-------cccc-CCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCC---ceeEEccCCCCCeEEEEEcCCCC
Q 035621           71 LWSSTP-------LHNI-PVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKG---DILRSFSAHDKPVSCLKISPDGS  138 (387)
Q Consensus        71 ~~~~~~-------~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~  138 (387)
                      +.++..       ...+ .|...|.+++|+| ++.+|++++.||.|++||++++   +.+..+..|...|++++|+|++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~  290 (430)
T 2xyi_A          211 INATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE  290 (430)
T ss_dssp             TTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCT
T ss_pred             CCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCC
Confidence            987432       1222 4678899999999 7789999999999999999887   56777889999999999999887


Q ss_pred             -EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-----
Q 035621          139 -LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN-----  212 (387)
Q Consensus       139 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----  212 (387)
                       ++++|+.||.|++||++.           ...++..+..|...|.+++|+|++ ..+|++++.|+.|++||+..     
T Consensus       291 ~~l~tg~~dg~v~vwd~~~-----------~~~~~~~~~~h~~~v~~i~~sp~~-~~~l~s~~~d~~i~iwd~~~~~~~~  358 (430)
T 2xyi_A          291 FILATGSADKTVALWDLRN-----------LKLKLHSFESHKDEIFQVQWSPHN-ETILASSGTDRRLHVWDLSKIGEEQ  358 (430)
T ss_dssp             TEEEEEETTSEEEEEETTC-----------TTSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred             CEEEEEeCCCeEEEEeCCC-----------CCCCeEEeecCCCCEEEEEECCCC-CCEEEEEeCCCcEEEEeCCCCcccc
Confidence             688999999999999943           234677888999999999999985 46799999999999999987     


Q ss_pred             ---------CcEEEEEe-cCCceeEEEeCCCCC-eEEEEccCCcEEEEecccc
Q 035621          213 ---------GTHLSTVT-FPCAIMGLALDPTET-DFFAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       213 ---------~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~  254 (387)
                               .+.+..+. |...|.+++|+|+++ ++++++.||.|++|++...
T Consensus       359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                     24555554 567899999999999 8899999999999999764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=2.6e-31  Score=237.87  Aligned_cols=277  Identities=11%  Similarity=0.060  Sum_probs=220.8

Q ss_pred             cEEEEeCCCC--ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC------CCCCeeeEE
Q 035621           19 PITAYNPSSG--AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP------VPEPVAPLA   90 (387)
Q Consensus        19 ~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~------~~~~v~~~~   90 (387)
                      .|..+|..++  +.+..+..+. .+.+++|+|+..+..    +++.++.|++||+.+++......      +...+.+++
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~----~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~  176 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAI----PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETIS  176 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEE----EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEE
T ss_pred             EEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEE----EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEE
Confidence            4555555445  5566666554 466999999554443    37889999999999988776332      556899999


Q ss_pred             eccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEeCCcccccCCCCCCCCc
Q 035621           91 TTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLIS-GGDDGVIATVPIFQLVDEHTDDKNPDD  169 (387)
Q Consensus        91 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~  169 (387)
                      |++++.++++++.|+.|++||+++++.+..+..|...+.+++|+|+++.+++ ++.|+.|++||+            ...
T Consensus       177 ~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~------------~~~  244 (433)
T 3bws_A          177 IPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDR------------KTK  244 (433)
T ss_dssp             EGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEET------------TTT
T ss_pred             EcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEEC------------CCC
Confidence            9999999999999999999999999999999889999999999999998854 458999999999            344


Q ss_pred             cceEeeeccCCCeEEEEEeeCCCCceEEEEe--------CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeE-EEE
Q 035621          170 LMLQKFVAHNDSVTAITCCIGSFNSIIISCS--------MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDF-FAA  240 (387)
Q Consensus       170 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~  240 (387)
                      ..+..+.. ...+.+++|+|++  +++++++        .|+.|++||+.+++.+..+.+...+.+++|+|+++.+ +++
T Consensus       245 ~~~~~~~~-~~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~  321 (433)
T 3bws_A          245 LEIRKTDK-IGLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSD  321 (433)
T ss_dssp             EEEEECCC-CSEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEE
T ss_pred             cEEEEecC-CCCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEe
Confidence            45555544 3458899999875  7888777        5889999999999988888777889999999999765 555


Q ss_pred             ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC---------------CCcEEEEECCCc
Q 035621          241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE---------------DGSVYIWEIEKR  305 (387)
Q Consensus       241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---------------dg~i~iwd~~~~  305 (387)
                      +.++.|++||+....        ....+  .+...+.+++|+|++++|++++.               ||.|++||+.++
T Consensus       322 ~~~~~v~v~d~~~~~--------~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~  391 (433)
T 3bws_A          322 MCCSKIEVYDLKEKK--------VQKSI--PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD  391 (433)
T ss_dssp             TTTTEEEEEETTTTE--------EEEEE--ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred             cCCCEEEEEECCCCc--------EEEEe--cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC
Confidence            889999999998632        22222  36678999999999999888876               579999999999


Q ss_pred             cEEEEeecccCCCceeEEEEec
Q 035621          306 QVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       306 ~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      +.+..+..+  ..+.++.|++.
T Consensus       392 ~~~~~~~~~--~~~~~~~~s~d  411 (433)
T 3bws_A          392 TVKEFWEAG--NQPTGLDVSPD  411 (433)
T ss_dssp             EEEEEEECS--SSEEEEEECTT
T ss_pred             cEEEEecCC--CCCceEEEcCC
Confidence            999988763  46788877653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.1e-31  Score=233.42  Aligned_cols=249  Identities=13%  Similarity=0.066  Sum_probs=179.1

Q ss_pred             EEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEE-EE
Q 035621           22 AYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYL-FT  100 (387)
Q Consensus        22 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~  100 (387)
                      ||++.+.+.+..+..|..+|++++|+|++.+++.    ++.+ .+++|++++++......+. .+..+++.++++.+ ++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~----g~~~-~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   76 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLIL----STLK-SFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFV   76 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEE----ECSS-EEEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEE----EcCC-EEEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEE
Confidence            5677777888888899999999999997665543    6655 5789999877665544333 57888899988877 56


Q ss_pred             ecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC
Q 035621          101 GGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND  180 (387)
Q Consensus       101 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (387)
                      ++.|+.|++||+.+++++..+. +...|.+++|+++.  ++++ .|+.|++||+...           ...+..+..   
T Consensus        77 ~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~-----------~~~~~~~~~---  138 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNP-----------WKRITDDIR---  138 (355)
T ss_dssp             CSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTT-----------CCBSSCCEE---
T ss_pred             ECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCC-----------ceeeEEecc---
Confidence            7788999999999999998886 67799999998764  4443 4789999999431           023333333   


Q ss_pred             CeEEEEEeeCCCCceEEE--EeCCCcEEEEeCCCCc---------------E-EEEEe-cCCceeEEEeCCCCCeEEEEc
Q 035621          181 SVTAITCCIGSFNSIIIS--CSMDCTCKFWRLLNGT---------------H-LSTVT-FPCAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       181 ~i~~~~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~---------------~-~~~~~-~~~~v~~~~~~~~~~~l~~~~  241 (387)
                      +...+++++    .+++.  |+.||.|++||+.+++               + +..+. |...|.+++|+|++++|++++
T Consensus       139 ~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s  214 (355)
T 3vu4_A          139 FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS  214 (355)
T ss_dssp             EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe
Confidence            333445555    34444  6889999999999865               1 44554 788999999999999999999


Q ss_pred             cCCc-EEEEeccccccccccccceeEeeccc-ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621          242 SDGL-IYKGLLKYQSRQQMHKGQELVTLANR-HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       242 ~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  306 (387)
                      .|+. |++||+++        +..+..+..+ |...|.+++|+|++++|++++.|++|++||+..+.
T Consensus       215 ~d~~~v~iwd~~~--------~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          215 QDGTIIRVFKTED--------GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             TTCSEEEEEETTT--------CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             CCCCEEEEEECCC--------CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            9998 99999987        3344444324 99999999999999999999999999999998764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-33  Score=268.12  Aligned_cols=243  Identities=14%  Similarity=0.190  Sum_probs=203.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCC--CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC--cc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPS--SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST--PL   77 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~--~~   77 (387)
                      ++|+|++++|++|+.||.|+|||+.  +++.+..+.+|.++|++++|+++.  ....+++++.||.|++||+.+++  ..
T Consensus        15 l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~--~~~~l~s~s~Dg~I~vwd~~~~~~~~~   92 (753)
T 3jro_A           15 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--FGTILASCSYDGKVLIWKEENGRWSQI   92 (753)
T ss_dssp             ECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT--SCSEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             EEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC--CCCEEEEEeCCCeEEEEECCCCccccc
Confidence            6899999999999999999999997  567788899999999999999751  12345558999999999999885  44


Q ss_pred             cccC-CCCCeeeEEeccC--CCEEEEecCCCcEEEEeCCCCc--eeEEccCCCCCeEEEEEcC-------------CCCE
Q 035621           78 HNIP-VPEPVAPLATTAD--GSYLFTGGLSGNVYAISVPKGD--ILRSFSAHDKPVSCLKISP-------------DGSL  139 (387)
Q Consensus        78 ~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~  139 (387)
                      ..+. |...|.+++|+|+  ++++++|+.||.|++||++++.  ....+..|...|.+++|+|             ++.+
T Consensus        93 ~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~  172 (753)
T 3jro_A           93 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK  172 (753)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCC
T ss_pred             ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCE
Confidence            4443 7789999999999  9999999999999999998773  3455678999999999999             5899


Q ss_pred             EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCC-CceEEEEeCCCcEEEEeCCCCcEE--
Q 035621          140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF-NSIIISCSMDCTCKFWRLLNGTHL--  216 (387)
Q Consensus       140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~--  216 (387)
                      +++|+.||.|++||++...        ........+.+|..+|.+++|+|+.. +.++++++.||.|++||+++++..  
T Consensus       173 l~sgs~dg~I~iwd~~~~~--------~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~  244 (753)
T 3jro_A          173 FVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK  244 (753)
T ss_dssp             EEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB
T ss_pred             EEEEECCCeEEEEeccCCc--------ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcce
Confidence            9999999999999994310        12245667889999999999999821 389999999999999999986421  


Q ss_pred             ----EEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621          217 ----STVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       217 ----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  254 (387)
                          ....+...+.+++|+|+++++++++.||.|++|++...
T Consensus       245 ~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          245 KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence                11126678999999999999999999999999999853

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.5e-32  Score=228.72  Aligned_cols=257  Identities=12%  Similarity=0.037  Sum_probs=181.3

Q ss_pred             EEEeeCCCCcEEEEeCCCC---ceeEeccCCCCCceeEEEcCccc--ee----------eeccccCCCCCeEEEEEccCC
Q 035621           10 VILTSSPEGPITAYNPSSG---AILAHFSGSRSPRRGLTFAGKPF--IA----------ASHISPTTGSGSVHLYNLWSS   74 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~--~~----------~~~~~~~~~d~~v~vw~~~~~   74 (387)
                      -++++++ ..|++|+..++   +.++++..|+.+|..+.+.|+..  +.          ...++.+..|..+.-|.+..+
T Consensus        56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g  134 (356)
T 2w18_A           56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG  134 (356)
T ss_dssp             EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred             EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence            4666765 68999999998   88999999999999999998321  10          111222233232222222211


Q ss_pred             CcccccCCCCCeeeEEeccCCCEEEEec--CCCcEEEEeC-CCCceeEEccCCCCCeEEEEEcC---CCCEEEEEeCCCc
Q 035621           75 TPLHNIPVPEPVAPLATTADGSYLFTGG--LSGNVYAISV-PKGDILRSFSAHDKPVSCLKISP---DGSLLISGGDDGV  148 (387)
Q Consensus        75 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~  148 (387)
                      .       ...+..+   ++++++.+++  .|+.|++|++ ++++.+..+..|...++.++|+|   ++.+|++++.|++
T Consensus       135 ~-------~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~T  204 (356)
T 2w18_A          135 N-------IKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNN  204 (356)
T ss_dssp             E-------EEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSE
T ss_pred             C-------eEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCc
Confidence            1       1112222   4555555533  5899999999 55888888889999999999999   7799999999999


Q ss_pred             EEEEeCCcccccCCCCCCCCccceEeeeccC---CCeEEEEEeeCCCCceE------------EEEeCCCcEEEEeCCCC
Q 035621          149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHN---DSVTAITCCIGSFNSII------------ISCSMDCTCKFWRLLNG  213 (387)
Q Consensus       149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~l------------~s~~~d~~i~iwd~~~~  213 (387)
                      |++||+            .+++.++.+.+|.   ..+.+++|+|++  .++            ++|+.|++|++||..++
T Consensus       205 IkIWDl------------~TGk~l~tL~g~~~~v~~v~~vafSpdG--~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg  270 (356)
T 2w18_A          205 IVIWNL------------KTGQLLKKMHIDDSYQASVCHKAYSEMG--LLFIVLSHPCAKESESLRSPVFQLIVINPKTT  270 (356)
T ss_dssp             EEEEET------------TTCCEEEEEECCC---CCCEEEEEEETT--EEEEEEC------------CCEEEEEEETTTT
T ss_pred             EEEEEC------------CCCcEEEEEcCCCcceeeeEEEEECCCC--CEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence            999999            6777888887654   367778899975  554            67888999999999999


Q ss_pred             cEEEEEe------cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEE-EEEEecCCC
Q 035621          214 THLSTVT------FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV-SVMMMNEGK  286 (387)
Q Consensus       214 ~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~  286 (387)
                      +.+..+.      +...+.+..+  ++..+++++.|++|++||+.++        .. ...+.+|...+. .++|+|||+
T Consensus       271 k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tG--------k~-l~tL~gH~~~vvs~vafSPDG~  339 (356)
T 2w18_A          271 LSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLG--------QC-TALLPPVSDQHWSFVKWSGTDS  339 (356)
T ss_dssp             EEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTC--------SE-EEEECCC--CCCCEEEECSSSS
T ss_pred             EEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCC--------cE-EEEecCCCCCeEEEEEECCCCC
Confidence            8877652      1222333333  3778999999999999999883        33 333456776655 689999999


Q ss_pred             EEEEEeCCCcEEEEEC
Q 035621          287 NLVSAAEDGSVYIWEI  302 (387)
Q Consensus       287 ~l~s~~~dg~i~iwd~  302 (387)
                      +|++|+.|++|+|||+
T Consensus       340 ~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          340 HLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEECTTSCEEEEEE
T ss_pred             EEEEEECCCcEEEecC
Confidence            9999999999999995

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-34  Score=254.60  Aligned_cols=219  Identities=11%  Similarity=0.009  Sum_probs=170.8

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|+|+|       .++.+.+|+.+ +.....+ .|...|.+++|+|++...+    +++.||.|++||.+.  ++..+.
T Consensus        58 V~FsPdg-------~~~~~~~~~~~-~~~~~~~-~~~~~V~~vawSPdG~~LA----s~s~dg~V~iwd~~~--~l~~l~  122 (588)
T 2j04_A           58 VKEFPLE-------FENKLDFELAQ-QNGLLNS-QPVCYPRVCKPSPIDDWMA----VLSNNGNVSVFKDNK--MLTNLD  122 (588)
T ss_dssp             EEEECCC-------CCCTTTTSCCC-SSCSSTT-SCSCCEEEEEECSSSSCEE----EEETTSCEEEEETTE--EEEECC
T ss_pred             EEECCCC-------CcceEEEEeCC-CceEeec-CCCCcEEEEEECCCCCEEE----EEeCCCcEEEEeCCc--eeeecc
Confidence            4677777       45555555532 2223333 4578899999999665544    499999999999544  444445


Q ss_pred             CCC-----CeeeEEeccCCCEEEEecCCCcEEEEeCCCCce-------eEEc----cCCCCCeEEEEEcCCCCEEEEEeC
Q 035621           82 VPE-----PVAPLATTADGSYLFTGGLSGNVYAISVPKGDI-------LRSF----SAHDKPVSCLKISPDGSLLISGGD  145 (387)
Q Consensus        82 ~~~-----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~l~~~~~  145 (387)
                      +..     .+.+++|+|||++|++|+.||+|++||+.++..       +.++    .+|...|.+++|+|+|  +++++.
T Consensus       123 ~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~  200 (588)
T 2j04_A          123 SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS  200 (588)
T ss_dssp             CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET
T ss_pred             CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC
Confidence            333     499999999999999999999999999988753       5665    6788899999999999  888999


Q ss_pred             CCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-EEEEecCC
Q 035621          146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-LSTVTFPC  223 (387)
Q Consensus       146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~  223 (387)
                      |++|++||+...         ........+ .+|...|.+++|+ +   +.+++++ +++|++||+.+++. ...+.|..
T Consensus       201 D~tVrlWd~~~~---------~~~~~~~tL~~~h~~~V~svaFs-g---~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~  266 (588)
T 2j04_A          201 NNSVFSMTVSAS---------SHQPVSRMIQNASRRKITDLKIV-D---YKVVLTC-PGYVHKIDLKNYSISSLKTGSLE  266 (588)
T ss_dssp             TCCEEEECCCSS---------SSCCCEEEEECCCSSCCCCEEEE-T---TEEEEEC-SSEEEEEETTTTEEEEEECSCCS
T ss_pred             CCeEEEEECCCC---------ccccceeeecccccCcEEEEEEE-C---CEEEEEe-CCeEEEEECCCCeEEEEEcCCCc
Confidence            999999999321         000123455 4788999999998 2   7888887 69999999998887 44446889


Q ss_pred             ceeEEEe--CCCCCeEEEEccCCcEEEEecc
Q 035621          224 AIMGLAL--DPTETDFFAAGSDGLIYKGLLK  252 (387)
Q Consensus       224 ~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~  252 (387)
                      .+..++|  +|++..+++++.+|. ++|...
T Consensus       267 ~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          267 NFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             eEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            9999999  999999999999999 999874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=5.8e-33  Score=244.88  Aligned_cols=287  Identities=14%  Similarity=0.098  Sum_probs=189.8

Q ss_pred             cCCCcEEEeeCCCCcEEEEeCCCC----------ceeEeccCCCCCceeEEEcCccc----------------eeeeccc
Q 035621            5 LPCNEVILTSSPEGPITAYNPSSG----------AILAHFSGSRSPRRGLTFAGKPF----------------IAASHIS   58 (387)
Q Consensus         5 s~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~----------------~~~~~~~   58 (387)
                      +|++..|++++.++.|.+|+....          ..+..+ .+..++..+.|.+...                .....++
T Consensus        27 ~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  105 (393)
T 4gq1_A           27 SPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLA  105 (393)
T ss_dssp             SGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC----------CCEEEEEEE
T ss_pred             CCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEE
Confidence            444444444445788999976321          111111 2444555666553211                1223567


Q ss_pred             cCCCCCeEEEEEccCCCccc-----ccC-CCCCeeeEEecc--------CCCEEEEecCCCcEEEEeCCCCceeEEccCC
Q 035621           59 PTTGSGSVHLYNLWSSTPLH-----NIP-VPEPVAPLATTA--------DGSYLFTGGLSGNVYAISVPKGDILRSFSAH  124 (387)
Q Consensus        59 ~~~~d~~v~vw~~~~~~~~~-----~~~-~~~~v~~~~~~~--------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  124 (387)
                      +++.|++|++||+.+++...     .+. |.+.|.+++|+|        ++++|++|+.|++|++||++++.++..+..|
T Consensus       106 s~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~  185 (393)
T 4gq1_A          106 CVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPL  185 (393)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEEC
T ss_pred             EEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCC
Confidence            79999999999998875432     233 778999999998        7899999999999999999988888888889


Q ss_pred             CCCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCcccccCCCCCCC-------------CccceEeeeccCCCeEEEEEeeC
Q 035621          125 DKPVSCLKISPDGS-LLISGGDDGVIATVPIFQLVDEHTDDKNP-------------DDLMLQKFVAHNDSVTAITCCIG  190 (387)
Q Consensus       125 ~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~i~~~~~~~~  190 (387)
                      ..++.+++|+|++. +|++++.|++|++||++............             .........+|...+.++.|.+.
T Consensus       186 ~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~  265 (393)
T 4gq1_A          186 SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGS  265 (393)
T ss_dssp             SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETT
T ss_pred             CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecC
Confidence            99999999999874 89999999999999996532211111000             00111223568888999998742


Q ss_pred             CCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCc------------------eeEEEeCC--CCCeEEEEccCCcEEEE
Q 035621          191 SFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCA------------------IMGLALDP--TETDFFAAGSDGLIYKG  249 (387)
Q Consensus       191 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~------------------v~~~~~~~--~~~~l~~~~~dg~i~i~  249 (387)
                       ++..+++++.|+++++||+..++....+. +...                  .....++|  ++.++++|+.||.|++|
T Consensus       266 -dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lw  344 (393)
T 4gq1_A          266 -DGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLI  344 (393)
T ss_dssp             -TTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEE
T ss_pred             -CCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEE
Confidence             25899999999999999998876554443 1111                  22233333  33456678889999999


Q ss_pred             eccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          250 LLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       250 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      |...+.        .... ...|..+|.+++|+|||++||+++.|| +.+|.+.
T Consensus       345 d~~~~~--------~~~~-~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          345 NTYEKD--------SNSI-PIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ETTCTT--------CCEE-EEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             ECCCCc--------EEEE-ecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            998732        2222 236888999999999999999998776 6666543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=232.12  Aligned_cols=230  Identities=12%  Similarity=0.085  Sum_probs=182.3

Q ss_pred             eeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC---------CCceeEEcc-
Q 035621           53 AASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP---------KGDILRSFS-  122 (387)
Q Consensus        53 ~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~-  122 (387)
                      ....+++|+.||.|++||+.+++.+..+. ...|.++.++|+   +++++.|+.|++|+..         +++.+..+. 
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~  122 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV  122 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence            34566779999999999999998877776 467888899988   9999999999999664         555454444 


Q ss_pred             CCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEE
Q 035621          123 AHDKPVSCLKISP--DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISC  199 (387)
Q Consensus       123 ~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~  199 (387)
                      .|...|.+++|+|  +++++++++.||.|++||+            ......... ..|...+.+++|+|++  .+|++|
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~------------~~~~~~~~~~~~~~~~i~~~~~~pdg--~~lasg  188 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY------------EDDSQYIVHSAKSDVEYSSGVLHKDS--LLLALY  188 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEES------------SSSCEEEEECCCSSCCCCEEEECTTS--CEEEEE
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC------------CCCcEEEEEecCCCCceEEEEECCCC--CEEEEE
Confidence            6778999999999  9999999999999999999            344444444 3455689999999975  899999


Q ss_pred             eCCCcEEEEeCCCCcEE-EEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621          200 SMDCTCKFWRLLNGTHL-STVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV  276 (387)
Q Consensus       200 ~~d~~i~iwd~~~~~~~-~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  276 (387)
                      +.||.|++||+++++.+ ..+.  |...|.+++|+|++.+|++++ ++.|++||++..........      +..|...+
T Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~------~~~~~~~~  261 (343)
T 3lrv_A          189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT------YTIPEFKT  261 (343)
T ss_dssp             CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC------CBC-----
T ss_pred             cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc------cccccccc
Confidence            99999999999999877 6665  578999999999999999999 55999999988543222111      11123333


Q ss_pred             --EEEEEecCCCEEEEEeC-CCcEEEEECCCccE
Q 035621          277 --VSVMMMNEGKNLVSAAE-DGSVYIWEIEKRQV  307 (387)
Q Consensus       277 --~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~  307 (387)
                        .+++|+|++++|++++. |+.|++|++.....
T Consensus       262 ~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          262 GTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             cceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence              46999999999999998 99999999976544

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2e-32  Score=241.42  Aligned_cols=248  Identities=12%  Similarity=0.074  Sum_probs=179.7

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCce-----eEeccCCCCCceeEEEcCcc----ceeeeccccCCCCCeEEEEEccC
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAI-----LAHFSGSRSPRRGLTFAGKP----FIAASHISPTTGSGSVHLYNLWS   73 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~d~~v~vw~~~~   73 (387)
                      .+++++.+|++|+.|++|+|||..+++.     +..+.+|.+.|++++|+|..    ......+++++.|++|++||+.+
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence            4567788999999999999999988754     34578999999999999721    12345677799999999999987


Q ss_pred             CCcc-cccCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEE-------------------------ccCCCC
Q 035621           74 STPL-HNIPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRS-------------------------FSAHDK  126 (387)
Q Consensus        74 ~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~-------------------------~~~~~~  126 (387)
                      +.+. ..+.+..++.+++|+|++ .+|++++.|++|++||+++++....                         ..+|..
T Consensus       176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  255 (393)
T 4gq1_A          176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS  255 (393)
T ss_dssp             TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred             CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence            7654 455688999999999987 4799999999999999987754322                         235777


Q ss_pred             CeEEEEEc-CCCCEEEEEeCCCcEEEEeCCcccccCCCCCC-------CCccceEeeeccCCCeEEEEEeeCCCCceEEE
Q 035621          127 PVSCLKIS-PDGSLLISGGDDGVIATVPIFQLVDEHTDDKN-------PDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS  198 (387)
Q Consensus       127 ~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s  198 (387)
                      .+.++.|+ |+++.+++++.|+.+++||+............       ...........+ .......+++..++.++++
T Consensus       256 ~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s  334 (393)
T 4gq1_A          256 SLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF-PSLLGACPHPRYMDYFATA  334 (393)
T ss_dssp             SCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS-CCSSCCEECSSCTTEEEEE
T ss_pred             cceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc-CcceeEEEccCCCCEEEEE
Confidence            88999986 79999999999999999998532211110000       000011111112 2223344556555667888


Q ss_pred             EeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEecc
Q 035621          199 CSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLK  252 (387)
Q Consensus       199 ~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  252 (387)
                      |+.||+|++||+.+++...... +..+|.+++|+|+|++|++++.+| +.+|.+.
T Consensus       335 gs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          335 HSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             ECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            9999999999999988766554 788999999999999999998766 5555543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=3.3e-30  Score=227.52  Aligned_cols=284  Identities=10%  Similarity=0.106  Sum_probs=218.2

Q ss_pred             ccccCCCcEE-EeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNEVI-LTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++....   ++++.++.|++||+.+++.+..+
T Consensus        37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~---~~~~~~~~v~v~d~~~~~~~~~~  112 (391)
T 1l0q_A           37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVY---VTNMASSTLSVIDTTSNTVAGTV  112 (391)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEE---EEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEE---EEECCCCEEEEEECCCCeEEEEE
Confidence            5799999876 677789999999999999998887665 899999999654321   22667899999999999988888


Q ss_pred             CCCCCeeeEEeccCCCEE-EEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCccc
Q 035621           81 PVPEPVAPLATTADGSYL-FTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLL-ISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~  158 (387)
                      .+...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++++ ++++.++.|++||+    
T Consensus       113 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~----  187 (391)
T 1l0q_A          113 KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDT----  187 (391)
T ss_dssp             ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEET----
T ss_pred             eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEEC----
Confidence            888889999999999977 67888999999999999988888765 457999999999877 57788999999999    


Q ss_pred             ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe---CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCC
Q 035621          159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS---MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTET  235 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  235 (387)
                              ........+ .+...+.+++|+|++  +++++++   .++.|++||+.+++.+..+..+..+.+++|+|+++
T Consensus       188 --------~~~~~~~~~-~~~~~~~~~~~~~~g--~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~  256 (391)
T 1l0q_A          188 --------VTNSVIDTV-KVEAAPSGIAVNPEG--TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGK  256 (391)
T ss_dssp             --------TTTEEEEEE-ECSSEEEEEEECTTS--SEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSS
T ss_pred             --------CCCeEEEEE-ecCCCccceEECCCC--CEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCC
Confidence                    344444444 356678899999875  7777776   68999999999999999988777899999999999


Q ss_pred             eE-EEEccCCcEEEEeccccccccccccc-e-------eEeecccccccEEEEEEecCC----------CEEEEEeCCCc
Q 035621          236 DF-FAAGSDGLIYKGLLKYQSRQQMHKGQ-E-------LVTLANRHDGVVVSVMMMNEG----------KNLVSAAEDGS  296 (387)
Q Consensus       236 ~l-~~~~~dg~i~i~d~~~~~~~~~~~~~-~-------~~~~~~~~~~~v~~~~~s~~~----------~~l~s~~~dg~  296 (387)
                      ++ ++++.|+.|++||+.++......... .       +.....++..+  ...|+.+.          ..+...+.|..
T Consensus       257 ~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~fs~~~~~~~~~~~~~~~~~~~~~~~~  334 (391)
T 1l0q_A          257 KVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYP--SADFKSNITSGYIFLSEPVQFTDLSKDAT  334 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCC--BCCEEESCCSSEEETTCCEEEEECCBSCS
T ss_pred             EEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccc--ccccccccccccccccceEEEEeCCCCce
Confidence            88 55678999999999875432211100 0       00000000111  12232221          34566677889


Q ss_pred             EEEEECCCccE
Q 035621          297 VYIWEIEKRQV  307 (387)
Q Consensus       297 i~iwd~~~~~~  307 (387)
                      +++|++.++..
T Consensus       335 ~~~W~~~~g~~  345 (391)
T 1l0q_A          335 EWKWDFGDGSS  345 (391)
T ss_dssp             EEEEECSSSCE
T ss_pred             EEEEECCCCcc
Confidence            99999988875

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=100.00  E-value=4.9e-31  Score=233.87  Aligned_cols=296  Identities=12%  Similarity=0.078  Sum_probs=221.2

Q ss_pred             cccCCCc-EEEeeC----CCC----cEEEEeC--CCCcee--EeccCCCCCceeEEEcCcc----------ceeeecccc
Q 035621            3 HHLPCNE-VILTSS----PEG----PITAYNP--SSGAIL--AHFSGSRSPRRGLTFAGKP----------FIAASHISP   59 (387)
Q Consensus         3 ~~s~~~~-~l~~~~----~dg----~i~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~~~----------~~~~~~~~~   59 (387)
                      +|++.|. ++++|+    .+|    .|++||+  .+++.+  ..+.+|...+..+++.+..          ......++.
T Consensus        69 ~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~  148 (415)
T 2hqs_A           69 AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAY  148 (415)
T ss_dssp             HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEE
T ss_pred             HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEE
Confidence            4667764 566775    567    8999999  899877  4588888888877776410          000111211


Q ss_pred             CCC---C---CeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC---cEEEEeCCCCceeEEccCCCCCeEE
Q 035621           60 TTG---S---GSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG---NVYAISVPKGDILRSFSAHDKPVSC  130 (387)
Q Consensus        60 ~~~---d---~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~  130 (387)
                      ++.   +   +.|++||+..+.......+...+.+++|+|+|++|++++.++   .|++||+.+++.. .+..|...+.+
T Consensus       149 ~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~  227 (415)
T 2hqs_A          149 VVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGA  227 (415)
T ss_dssp             EEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEE
T ss_pred             EEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccC
Confidence            222   2   799999997655444445778999999999999999998775   9999999998875 46678889999


Q ss_pred             EEEcCCCCEEE-EEeCCCc--EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CC--c
Q 035621          131 LKISPDGSLLI-SGGDDGV--IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DC--T  204 (387)
Q Consensus       131 ~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~--~  204 (387)
                      ++|+|+|++|+ +++.++.  |++||+.            .. ....+..|...+.+++|+|++  +.|++++. ++  .
T Consensus       228 ~~~spdg~~la~~~~~~g~~~i~~~d~~------------~~-~~~~l~~~~~~~~~~~~spdg--~~l~~~s~~~g~~~  292 (415)
T 2hqs_A          228 PAFSPDGSKLAFALSKTGSLNLYVMDLA------------SG-QIRQVTDGRSNNTEPTWFPDS--QNLAFTSDQAGRPQ  292 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETT------------TC-CEEECCCCSSCEEEEEECTTS--SEEEEEECTTSSCE
T ss_pred             EEEcCCCCEEEEEEecCCCceEEEEECC------------CC-CEEeCcCCCCcccceEECCCC--CEEEEEECCCCCcE
Confidence            99999999877 6666655  9999982            22 235677788899999999985  77777775 44  6


Q ss_pred             EEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC---CcEEEEeccccccccccccceeEeecccccccEEEEEE
Q 035621          205 CKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD---GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM  281 (387)
Q Consensus       205 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  281 (387)
                      |.+||+.+++......+...+.+++|+|+|++|++++.+   ..|++||+.++..         ..+ ..+. .+.+++|
T Consensus       293 i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---------~~l-~~~~-~~~~~~~  361 (415)
T 2hqs_A          293 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---------QVL-SSTF-LDETPSL  361 (415)
T ss_dssp             EEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---------EEC-CCSS-SCEEEEE
T ss_pred             EEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---------EEe-cCCC-CcCCeEE
Confidence            888899888754333356788899999999999988764   5899999987321         122 2343 7899999


Q ss_pred             ecCCCEEEEEeCCC---cEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          282 MNEGKNLVSAAEDG---SVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       282 s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      +|+|++|++++.++   .|++||+. ++.+..+..+ .+.|.+++|++-
T Consensus       362 spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~-~~~v~~~~~~~~  408 (415)
T 2hqs_A          362 APNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT-DGQVKFPAWSPY  408 (415)
T ss_dssp             CTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCS-SSEEEEEEECCC
T ss_pred             cCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCC-CCCCcCCccccc
Confidence            99999999988877   79999987 4455667655 568988888764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.98  E-value=2.9e-29  Score=229.06  Aligned_cols=307  Identities=9%  Similarity=0.032  Sum_probs=221.5

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc--cCCCccccc
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL--WSSTPLHNI   80 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~--~~~~~~~~~   80 (387)
                      .|+|++.++++++.|++|.+||..+++++.++..+.. +..++|+|++.++..    ++.|+.|.+||+  .+++.+..+
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v----~~~d~~V~v~D~~~~t~~~~~~i  218 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLV----IGRDARIDMIDLWAKEPTKVAEI  218 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEE----EETTSEEEEEETTSSSCEEEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEE----ECCCCeEEEEECcCCCCcEEEEE
Confidence            5789999999999999999999999999999984433 889999997654443    677899999999  788888888


Q ss_pred             CCCCCeeeEEecc----CCCEEEEec-CCCcEEEEeCCCCceeEEccCC-----------CCCeEEEEEcCCCC-EEEEE
Q 035621           81 PVPEPVAPLATTA----DGSYLFTGG-LSGNVYAISVPKGDILRSFSAH-----------DKPVSCLKISPDGS-LLISG  143 (387)
Q Consensus        81 ~~~~~v~~~~~~~----~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~-~l~~~  143 (387)
                      .....+..++|+|    +|+++++++ .+++|.+||..+++++..+..+           ...+..+.++|++. ++++.
T Consensus       219 ~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          219 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  298 (543)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence            8878899999999    999999987 4899999999998887766531           12455666666443 33444


Q ss_pred             eCCCcEEEEeCCcccccC-------CCC----CC---------------------CCccceEeeec----cCCCeEEEEE
Q 035621          144 GDDGVIATVPIFQLVDEH-------TDD----KN---------------------PDDLMLQKFVA----HNDSVTAITC  187 (387)
Q Consensus       144 ~~dg~i~iwd~~~~~~~~-------~~~----~~---------------------~~~~~~~~~~~----~~~~i~~~~~  187 (387)
                      ..++.|.+||+.......       ...    ..                     .+.+.+..+..    |.+....+ +
T Consensus       299 ~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~  377 (543)
T 1nir_A          299 KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-V  377 (543)
T ss_dssp             TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-E
T ss_pred             CCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-C
Confidence            455566666553210000       000    00                     23333343432    43333222 3


Q ss_pred             eeCCCCceEEEEe-CCCcEEEEeCCC-------CcEEEEEec-CCceeEEEeCCCCCeEEEEc-------cCCcEEEEec
Q 035621          188 CIGSFNSIIISCS-MDCTCKFWRLLN-------GTHLSTVTF-PCAIMGLALDPTETDFFAAG-------SDGLIYKGLL  251 (387)
Q Consensus       188 ~~~~~~~~l~s~~-~d~~i~iwd~~~-------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~  251 (387)
                      +|+. +.+++++. .|++|.+||+.+       +++++++.. ...+..++++|++++|++++       .++.|.+||+
T Consensus       378 ~p~~-g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~  456 (543)
T 1nir_A          378 HPKY-GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL  456 (543)
T ss_dssp             ETTT-EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred             CCCC-ccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence            4543 46777776 589999999998       889999984 56788999999999999987       3789999999


Q ss_pred             cccccccccccceeEee-----cccccccEEEEEEecCCCEEEEEe-----CCCcEEEEECCCccEEEEeecccCCCcee
Q 035621          252 KYQSRQQMHKGQELVTL-----ANRHDGVVVSVMMMNEGKNLVSAA-----EDGSVYIWEIEKRQVVMVLKNELAGSISE  321 (387)
Q Consensus       252 ~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~  321 (387)
                      .+.....     .....     +..+...+..+.|+|+|+.++++.     .|+.|.|||.++++++..++......+++
T Consensus       457 ~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~~~p~g  531 (543)
T 1nir_A          457 KNLDAKY-----QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTG  531 (543)
T ss_dssp             TCTTSCC-----EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEE
T ss_pred             CCCCCCe-----EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCCCccCCCe
Confidence            9854320     11100     124577899999999999888652     47999999999999999998654434443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.5e-29  Score=210.69  Aligned_cols=207  Identities=14%  Similarity=0.102  Sum_probs=152.1

Q ss_pred             ccccCC----CcEEEeeCCCCcEEEEeCCCCceeEe-ccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc-cCCC
Q 035621            2 LHHLPC----NEVILTSSPEGPITAYNPSSGAILAH-FSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL-WSST   75 (387)
Q Consensus         2 l~~s~~----~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~-~~~~   75 (387)
                      |+|+||    +..+++++.  .+.+|++.+++.+.. ..+|                         |+.|++|++ .+++
T Consensus       117 la~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~-------------------------d~~V~~~~~s~dG~  169 (356)
T 2w18_A          117 LFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLS-------------------------DQQVEVMTFAEDGG  169 (356)
T ss_dssp             ECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSST-------------------------TCEEEEEEECTTSC
T ss_pred             EEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCC-------------------------CCcEEEEEECCCCc
Confidence            678999    888888774  488888876666554 3444                         455555555 2233


Q ss_pred             ccccc-CCCCCeeeEEecc---CCCEEEEecCCCcEEEEeCCCCceeEEccCCC---CCeEEEEEcCCCCEE--------
Q 035621           76 PLHNI-PVPEPVAPLATTA---DGSYLFTGGLSGNVYAISVPKGDILRSFSAHD---KPVSCLKISPDGSLL--------  140 (387)
Q Consensus        76 ~~~~~-~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l--------  140 (387)
                      .+..+ .|...+..++|++   ++.+|++++.|++|++||++++++++++.+|.   ..+.+++|+|++.++        
T Consensus       170 ~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~  249 (356)
T 2w18_A          170 GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA  249 (356)
T ss_dssp             EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----
T ss_pred             eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC
Confidence            33332 3667788889998   77999999999999999999999999998654   467888999999876        


Q ss_pred             ----EEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-----eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC
Q 035621          141 ----ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-----VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL  211 (387)
Q Consensus       141 ----~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  211 (387)
                          ++|+.|++|++||.            .....+..+     .+|...+.+..+  +  +.++++++.|++|+|||+.
T Consensus       250 ~w~laSGs~D~tIklWd~------------~tgk~l~v~~~~~p~Gh~~~~lsg~~--s--g~~lASgS~DgTIkIWDl~  313 (356)
T 2w18_A          250 KESESLRSPVFQLIVINP------------KTTLSVGVMLYCLPPGQAGRFLEGDV--K--DHCAAAILTSGTIAIWDLL  313 (356)
T ss_dssp             --------CCEEEEEEET------------TTTEEEEEEEECCCTTCCCCEEEEEE--E--TTEEEEEETTSCEEEEETT
T ss_pred             cceeeccCCCcEEEEEEC------------CCCEEEEEEEeeccCCCcceeEcccc--C--CCEEEEEcCCCcEEEEECC
Confidence                56788999999998            344444433     255555443333  2  4789999999999999999


Q ss_pred             CCcEEEEEe-cCCce-eEEEeCCCCCeEEEEccCCcEEEEec
Q 035621          212 NGTHLSTVT-FPCAI-MGLALDPTETDFFAAGSDGLIYKGLL  251 (387)
Q Consensus       212 ~~~~~~~~~-~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~  251 (387)
                      +++++.++. |...+ .+++|+|+|++|++|+.|++|++||+
T Consensus       314 tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          314 LGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            999999997 44444 46899999999999999999999985

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=3.2e-28  Score=232.46  Aligned_cols=294  Identities=9%  Similarity=0.008  Sum_probs=217.8

Q ss_pred             ccccCCCcEEEeeCC-CC-----cEEEEeCCCCceeEeccCCCC------------------------CceeEEEcCccc
Q 035621            2 LHHLPCNEVILTSSP-EG-----PITAYNPSSGAILAHFSGSRS------------------------PRRGLTFAGKPF   51 (387)
Q Consensus         2 l~~s~~~~~l~~~~~-dg-----~i~iwd~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~   51 (387)
                      ++|||||++|++++. |+     .|++||+.+++....+..+..                        .+.+++|+|++.
T Consensus        42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~  121 (741)
T 2ecf_A           42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ  121 (741)
T ss_dssp             EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS
T ss_pred             ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC
Confidence            579999999999988 88     899999999987766654433                        388999999776


Q ss_pred             eeeeccccCCCCCeEEEEEccCC---CcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCC-
Q 035621           52 IAASHISPTTGSGSVHLYNLWSS---TPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP-  127 (387)
Q Consensus        52 ~~~~~~~~~~~d~~v~vw~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-  127 (387)
                      .++.    ++ ++.|.+||+.++   +......+...+..++|+|||++|++++ ++.|++||+.+++.......+... 
T Consensus       122 ~l~~----~~-~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~  195 (741)
T 2ecf_A          122 RLLF----PL-GGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTI  195 (741)
T ss_dssp             EEEE----EE-TTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSE
T ss_pred             EEEE----Ee-CCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccce
Confidence            5443    33 399999999988   5555555667899999999999999887 568999999988776555444332 


Q ss_pred             ---------------eEEEEEcCCCCEEEEEeCCC---------------------------------cEEEEeCCcccc
Q 035621          128 ---------------VSCLKISPDGSLLISGGDDG---------------------------------VIATVPIFQLVD  159 (387)
Q Consensus       128 ---------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i~iwd~~~~~~  159 (387)
                                     +.+++|+|||++|++++.|+                                 .|.+||+.    
T Consensus       196 ~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~----  271 (741)
T 2ecf_A          196 GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA----  271 (741)
T ss_dssp             EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS----
T ss_pred             eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC----
Confidence                           47899999999999988765                                 78888872    


Q ss_pred             cCCCCCCCC-ccceEeee--ccCCCeEEEEEeeCCCCceEEEEeC-----CCcEEEEeCCCCcEEEEEecCC-----cee
Q 035621          160 EHTDDKNPD-DLMLQKFV--AHNDSVTAITCCIGSFNSIIISCSM-----DCTCKFWRLLNGTHLSTVTFPC-----AIM  226 (387)
Q Consensus       160 ~~~~~~~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~-----~v~  226 (387)
                              . ........  .|...+..++| |++  +.|+.++.     +..|++||+.+++....+....     .+.
T Consensus       272 --------~~~~~~~~~~~~~~~~~~~~~~~-pDg--~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          272 --------EQAQTQWIDLGKEQDIYLARVNW-RDP--QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             --------TTCCCEEECCCSCSSEEEEEEEE-EET--TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             --------CCCceEEecCCCCcceEEEEEEe-CCC--CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence                    2 22222221  47778999999 986  77776543     5689999999998777665322     456


Q ss_pred             EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEE-EEecCCCEEEE-EeCCC--cEEEEEC
Q 035621          227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV-MMMNEGKNLVS-AAEDG--SVYIWEI  302 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s-~~~dg--~i~iwd~  302 (387)
                      .++|+|||+++++++.+|.+.+|.+...       +.  ...+..|...+..+ .|+|+++.|+. ++.++  .++||++
T Consensus       341 ~~~~spdg~~~~~~~~~g~~~l~~~~~~-------~~--~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~  411 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERTGFQHLYRIDSK-------GK--AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV  411 (741)
T ss_dssp             CCEECTTSCEEEEECTTSSCEEEEECSS-------SC--EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred             ceEECCCCeEEEEecCCCccEEEEEcCC-------CC--eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence            8999999998888999998888877631       12  22234567778887 59999997764 55555  8999998


Q ss_pred             CC-ccEEEEeecccCCCceeEEEEec
Q 035621          303 EK-RQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       303 ~~-~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      .. ++.+..+..  ...+..+.|++.
T Consensus       412 ~~~g~~~~~l~~--~~~~~~~~~spd  435 (741)
T 2ecf_A          412 PLQGGQPQRLSK--APGMHSASFARN  435 (741)
T ss_dssp             ETTCCCCEECCC--SCSEEEEEECTT
T ss_pred             EcCCCCeeeccc--CCCceEEEECCC
Confidence            74 555666654  335666666653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.97  E-value=1.1e-27  Score=206.52  Aligned_cols=290  Identities=11%  Similarity=0.019  Sum_probs=205.1

Q ss_pred             cccCCCc-EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc-cccc
Q 035621            3 HHLPCNE-VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP-LHNI   80 (387)
Q Consensus         3 ~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~-~~~~   80 (387)
                      .|.++++ .+++++.++.|.+||..+++....+..+...+ .++|+|++....   +++..++.|.+||+.+++. ...+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~---~~~~~~~~i~~~d~~~~~~~~~~~   79 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVV---VTSDFCQTLVQIETQLEPPKVVAI   79 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEE---EEESTTCEEEEEECSSSSCEEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEE---EEeCCCCeEEEEECCCCceeEEec
Confidence            3555554 57788889999999999999988887766667 999999764221   2245588999999999887 6666


Q ss_pred             CCCCCeee-EEeccCCCEEEEecCCC---cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEE-eCCCc-EEEEeC
Q 035621           81 PVPEPVAP-LATTADGSYLFTGGLSG---NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISG-GDDGV-IATVPI  154 (387)
Q Consensus        81 ~~~~~v~~-~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~iwd~  154 (387)
                      ........ ++|+|+|++++++..++   .|.+||+.+++.+..+.. .....+++|+|++++++++ ..++. |.+|++
T Consensus        80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~  158 (331)
T 3u4y_A           80 QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKI  158 (331)
T ss_dssp             EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred             ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence            65554555 99999999999665553   899999999998887764 4456999999999865555 55588 999998


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCc-eEEEEeCCCcEEEEeCCCCcE---EEEEecCCceeEEEe
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS-IIISCSMDCTCKFWRLLNGTH---LSTVTFPCAIMGLAL  230 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~v~~~~~  230 (387)
                      ......       .... ............++|+|++  + +++++..++.|.+||+.+++.   +..+.....+..++|
T Consensus       159 ~~~g~~-------~~~~-~~~~~~~~~~~~~~~spdg--~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~  228 (331)
T 3u4y_A          159 DADGVL-------FDTG-QEFISGGTRPFNITFTPDG--NFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVV  228 (331)
T ss_dssp             CTTCCE-------EEEE-EEEECSSSSEEEEEECTTS--SEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEE
T ss_pred             CCCCcE-------eecC-CccccCCCCccceEECCCC--CEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEE
Confidence            421000       0000 1222344567899999885  5 455566789999999999988   888887888899999


Q ss_pred             CCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe-CCCcEEEEECCCccE
Q 035621          231 DPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA-EDGSVYIWEIEKRQV  307 (387)
Q Consensus       231 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~  307 (387)
                      +|+|+++++++. ++.|.+||..++........................++|+|++++|++++ .++.|.+||+.....
T Consensus       229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            999998877654 78899999987543111000000000011112235689999999886555 566999999987554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.96  E-value=1e-26  Score=200.80  Aligned_cols=270  Identities=13%  Similarity=0.063  Sum_probs=204.7

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCCCC--CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCC--
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGSRS--PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPE--   84 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~--   84 (387)
                      ++|++++.++.|.+||+.+++.+..+.....  .+..++|+|++...   ++++..++.|.+||+.+++.+..+....  
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l---~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~   78 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIA---YATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEE---EEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEE---EEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence            5789999999999999999998887763332  47899999976322   1225678999999999998877666544  


Q ss_pred             ----CeeeEEeccCCCEEEEec------------CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 035621           85 ----PVAPLATTADGSYLFTGG------------LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGV  148 (387)
Q Consensus        85 ----~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  148 (387)
                          .+..++|+|+|++++++.            .++.|.+||+.+++.+..+.. ...+.+++|+|++++++++  ++.
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~  155 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRD  155 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSS
T ss_pred             cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCe
Confidence                788999999999998885            579999999999888777764 4567889999999988887  689


Q ss_pred             EEEEeCCcccccCCCCCCCCccceEeeeccC--CCeEEEEEeeCCCCceEEEEe-CCC----------------------
Q 035621          149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHN--DSVTAITCCIGSFNSIIISCS-MDC----------------------  203 (387)
Q Consensus       149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~s~~-~d~----------------------  203 (387)
                      |.+||+            ........+..+.  .+   +.|+|++  ..++..+ .++                      
T Consensus       156 i~~~d~------------~~~~~~~~~~~~~~~~~---~~~s~dg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (337)
T 1pby_B          156 LHVMDP------------EAGTLVEDKPIQSWEAE---TYAQPDV--LAVWNQHESSGVMATPFYTARKDIDPADPTAYR  218 (337)
T ss_dssp             EEEEET------------TTTEEEEEECSTTTTTT---TBCCCBC--CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEE
T ss_pred             EEEEEC------------CCCcEeeeeeccccCCC---ceeCCCc--cEEeeeccCCCceeeeeeccccccccccccccc
Confidence            999999            3334444443332  22   2556664  3333322 222                      


Q ss_pred             -cEEEEeCCCCcEEEEEe---cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEE
Q 035621          204 -TCKFWRLLNGTHLSTVT---FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV  279 (387)
Q Consensus       204 -~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  279 (387)
                       .|.+||+.+++.. .+.   +...+.+++|+|++++++++  ++.|++||+.+..        .....  .....+.++
T Consensus       219 ~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~--------~~~~~--~~~~~~~~~  285 (337)
T 1pby_B          219 TGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA--------SIKRV--PLPHSYYSV  285 (337)
T ss_dssp             EEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE--------EEEEE--ECSSCCCEE
T ss_pred             cceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc--------Cccee--cCCCceeeE
Confidence             4789999998875 332   45678899999999999988  7999999997632        22222  123457899


Q ss_pred             EEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       280 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      +|+|+|++|++++.++.|++||+.+++.+..+...
T Consensus       286 ~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          286 NVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             EECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            99999999999999999999999999999888754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=8.8e-27  Score=206.55  Aligned_cols=247  Identities=15%  Similarity=0.060  Sum_probs=191.4

Q ss_pred             CcEEEeeCCC------CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCC---CeEEEEEccCCCccc
Q 035621            8 NEVILTSSPE------GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS---GSVHLYNLWSSTPLH   78 (387)
Q Consensus         8 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d---~~v~vw~~~~~~~~~   78 (387)
                      +..++.++.+      +.|++||+. +.....+.+|...+.+++|+|++...+.    ++.+   ..|++||+.+++...
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~----~s~~~~~~~i~~~d~~tg~~~~  217 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAY----VTFESGRSALVIQTLANGAVRQ  217 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEE----EECTTSSCEEEEEETTTCCEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEE----EEecCCCcEEEEEECCCCcEEE
Confidence            5566665543      799999986 5556778889999999999997654433    4555   499999999998876


Q ss_pred             ccCCCCCeeeEEeccCCCEEE-EecCCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEE
Q 035621           79 NIPVPEPVAPLATTADGSYLF-TGGLSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-DG--VIATV  152 (387)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iw  152 (387)
                      ...+...+.+++|+|||+.|+ +++.++  .|++||+.+++. ..+..|...+.+++|+|++++|++++. ++  .|++|
T Consensus       218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~  296 (415)
T 2hqs_A          218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV  296 (415)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence            666778899999999999888 666555  499999988876 567778889999999999998888876 45  57777


Q ss_pred             eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC---CcEEEEeCCCCcEEEEEecCCceeEEE
Q 035621          153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD---CTCKFWRLLNGTHLSTVTFPCAIMGLA  229 (387)
Q Consensus       153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~v~~~~  229 (387)
                      |+.            .. ....+..+...+.+++|+|++  ++|++++.+   ..|++||+.+++.. .+.....+.+++
T Consensus       297 d~~------------~~-~~~~l~~~~~~~~~~~~spdG--~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~  360 (415)
T 2hqs_A          297 NIN------------GG-APQRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPS  360 (415)
T ss_dssp             ETT------------SS-CCEECCCSSSEEEEEEECTTS--SEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEE
T ss_pred             ECC------------CC-CEEEEecCCCcccCeEECCCC--CEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeE
Confidence            872            22 234455567788899999985  778777764   58999999988764 344344899999


Q ss_pred             eCCCCCeEEEEccCC---cEEEEeccccccccccccceeEeecccccccEEEEEEecCCC
Q 035621          230 LDPTETDFFAAGSDG---LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK  286 (387)
Q Consensus       230 ~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  286 (387)
                      |+|+|++|+.++.++   .|++||+...         . ...+..|.+.|.+++|+|...
T Consensus       361 ~spdg~~l~~~s~~~~~~~l~~~d~~g~---------~-~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          361 LAPNGTMVIYSSSQGMGSVLNLVSTDGR---------F-KARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             ECTTSSEEEEEEEETTEEEEEEEETTSC---------C-EEECCCSSSEEEEEEECCCCC
T ss_pred             EcCCCCEEEEEEcCCCccEEEEEECCCC---------c-EEEeeCCCCCCcCCccccccc
Confidence            999999999988876   7999998642         2 223347889999999999754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.96  E-value=3.9e-27  Score=224.33  Aligned_cols=303  Identities=11%  Similarity=0.062  Sum_probs=207.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCC---CceeEEEcCccceeeecccc-----CCCCCeEEEEEccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRS---PRRGLTFAGKPFIAASHISP-----TTGSGSVHLYNLWS   73 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~-----~~~d~~v~vw~~~~   73 (387)
                      ++|+|||+++++ +.||.|++||+.+++....+..|..   .|.+++|+|++..++.....     .+.++.+.+||+.+
T Consensus        22 ~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~  100 (723)
T 1xfd_A           22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (723)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             cEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC
Confidence            579999997776 6889999999999998888877765   49999999987654431110     12248899999998


Q ss_pred             CCcccccC---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCe------------------EEEE
Q 035621           74 STPLHNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPV------------------SCLK  132 (387)
Q Consensus        74 ~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v------------------~~~~  132 (387)
                      ++......   +...+..++|+|||+.|+.++. +.|++||+.+++.......+...+                  .+++
T Consensus       101 ~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~  179 (723)
T 1xfd_A          101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (723)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             CceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEE
Confidence            87622222   2234889999999999999875 789999999888766655444333                  7899


Q ss_pred             EcCCCCEEEEEeCCC----------------------------------cEEEEeCCcccccCCCCCCCCccceEeeec-
Q 035621          133 ISPDGSLLISGGDDG----------------------------------VIATVPIFQLVDEHTDDKNPDDLMLQKFVA-  177 (387)
Q Consensus       133 ~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-  177 (387)
                      |+|||++|++++.|+                                  .|++||+.            .......+.. 
T Consensus       180 ~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~------------~~~~~~~l~~~  247 (723)
T 1xfd_A          180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN------------GPTHDLEMMPP  247 (723)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS------------SSCCCEECCCC
T ss_pred             ECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC------------CCceeEEeeCC
Confidence            999999999887653                                  67888872            2222233333 


Q ss_pred             -----cCCCeEEEEEeeCCCCceEEEEeC----CCcEEEEeCCCCcEEEEEe--cCCce----eEEEeCCCCCeEEEE--
Q 035621          178 -----HNDSVTAITCCIGSFNSIIISCSM----DCTCKFWRLLNGTHLSTVT--FPCAI----MGLALDPTETDFFAA--  240 (387)
Q Consensus       178 -----~~~~i~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~--~~~~v----~~~~~~~~~~~l~~~--  240 (387)
                           +...+..++|+|++  +++++.+.    +..|++||+.+++....+.  +...+    ..++|+|||+.|+..  
T Consensus       248 ~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  325 (723)
T 1xfd_A          248 DDPRMREYYITMVKWATST--KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA  325 (723)
T ss_dssp             CCGGGSSEEEEEEEESSSS--EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred             ccCCCccceeEEEEEeCCC--eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence                 35678899999985  77766643    3579999999998766654  22333    378999999988764  


Q ss_pred             ccCC------cEEEEec-cccccccccccceeEeecccccccEE-EEEEecCCCEEEEEeCC---CcEEEEECCCcc--E
Q 035621          241 GSDG------LIYKGLL-KYQSRQQMHKGQELVTLANRHDGVVV-SVMMMNEGKNLVSAAED---GSVYIWEIEKRQ--V  307 (387)
Q Consensus       241 ~~dg------~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~--~  307 (387)
                      ..++      .|++||. ..+...      ....+. .+...+. .++|+|||+.|+..+.+   +.+++|++....  .
T Consensus       326 ~~~~~~~~~~~l~~~d~~~~~~~~------~~~~l~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~  398 (723)
T 1xfd_A          326 IPQGGRGKFYHITVSSSQPNSSND------NIQSIT-SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN  398 (723)
T ss_dssp             ECCSSSSCEEEEEEECSSCCSSSC------CCCBSC-CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred             cccCCCcceeEEEEEeccCCCCcc------ceeEee-cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCC
Confidence            3466      4666663 321100      011111 2233344 46999999999766555   789999986532  3


Q ss_pred             EEEeecc--cCCCceeEEEEec
Q 035621          308 VMVLKNE--LAGSISEMVIATG  327 (387)
Q Consensus       308 ~~~~~~~--~~~~v~~~~~~~~  327 (387)
                      ...+...  +.+.+..+.|++.
T Consensus       399 ~~~l~~~~~~~~~~~~~~~spd  420 (723)
T 1xfd_A          399 RQCLSCDLVENCTYFSASFSHS  420 (723)
T ss_dssp             CBCSSTTSSSSCCCCEEEECTT
T ss_pred             cceecccccCCCCeEEEEECCC
Confidence            3344431  2345677777764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=6.4e-26  Score=197.14  Aligned_cols=265  Identities=12%  Similarity=0.129  Sum_probs=204.9

Q ss_pred             ccccCCCcEEEeeCC-------CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC
Q 035621            2 LHHLPCNEVILTSSP-------EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS   74 (387)
Q Consensus         2 l~~s~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~   74 (387)
                      ++|+|+++++++++.       ++.|.+||..+++.+..+... ..+..++|+|++...   +++...++.|.+||..++
T Consensus        46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l---~v~~~~~~~v~~~d~~~~  121 (353)
T 3vgz_A           46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTL---WFGNTVNSAVTAIDAKTG  121 (353)
T ss_dssp             EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEE---EEEETTTTEEEEEETTTC
T ss_pred             eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEE---EEEecCCCEEEEEeCCCC
Confidence            578999988887763       568999999999988888643 447889999965421   122567899999999999


Q ss_pred             CcccccCCCC----------CeeeEEeccCCCEEEEec--CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEE
Q 035621           75 TPLHNIPVPE----------PVAPLATTADGSYLFTGG--LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLIS  142 (387)
Q Consensus        75 ~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  142 (387)
                      +.+..+....          .+.+++|+|+++++++++  .++.|.+||+.+++.+..+..+...+.+++|+|+++++++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  201 (353)
T 3vgz_A          122 EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYT  201 (353)
T ss_dssp             CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEE
T ss_pred             eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEE
Confidence            8877665432          268899999999888776  4788999999999998888756667899999999999999


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCCccceEeeec----cCCCeEEEEEeeCCCCceEEE-EeCCCcEEEEeCCCCcEEE
Q 035621          143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA----HNDSVTAITCCIGSFNSIIIS-CSMDCTCKFWRLLNGTHLS  217 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~  217 (387)
                      ++.++.|.+||+            ........+..    +...+..++++|++  ++++. ...++.|.+||+.+++.+.
T Consensus       202 ~~~~~~i~~~d~------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~~~~  267 (353)
T 3vgz_A          202 TNADGELITIDT------------ADNKILSRKKLLDDGKEHFFINISLDTAR--QRAFITDSKAAEVLVVDTRNGNILA  267 (353)
T ss_dssp             ECTTSEEEEEET------------TTTEEEEEEECCCSSSCCCEEEEEEETTT--TEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             EcCCCeEEEEEC------------CCCeEEEEEEcCCCCCCcccceEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEE
Confidence            999999999998            44444544443    45567889999986  54444 4456999999999999988


Q ss_pred             EEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621          218 TVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG  295 (387)
Q Consensus       218 ~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  295 (387)
                      .+..... ..++|+|+++++++++ .++.|.+||..+..        ....+  .....+.+++|+|+|++|+.+..++
T Consensus       268 ~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--------~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          268 KVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYK--------VVKTF--DTPTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTE--------EEEEE--ECCSEEEEEEECTTSCEEEEEEECC
T ss_pred             EEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCe--------EEEEE--ecCCCCCeEEEcCCCCEEEEEEccc
Confidence            8876554 6799999999776665 68999999998732        22222  1234679999999999777766554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=5.7e-26  Score=196.59  Aligned_cols=293  Identities=13%  Similarity=0.164  Sum_probs=196.7

Q ss_pred             cEEEeeCCCCcEEEEeCC-CC--ceeEeccCCCCCceeEEEcCccceeeeccccCCC-CCeEEEEEcc--CCC--ccccc
Q 035621            9 EVILTSSPEGPITAYNPS-SG--AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTG-SGSVHLYNLW--SST--PLHNI   80 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-d~~v~vw~~~--~~~--~~~~~   80 (387)
                      .++++++.++.|++||+. ++  +.+..+ .+...+.+++|+|++..+..    ++. ++.|.+|++.  +++  .+..+
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~----~~~~~~~v~~~~~~~~~~~~~~~~~~   80 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYV----GVRPEFRVLAYRIAPDDGALTFAAES   80 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEE----EETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEE----eecCCCeEEEEEecCCCCceeecccc
Confidence            345555789999999985 34  333333 46777999999997653322    334 4999999997  454  33344


Q ss_pred             CCCCCeeeEEeccCCCEEEEecC-CCcEEEEeCC---CCceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 035621           81 PVPEPVAPLATTADGSYLFTGGL-SGNVYAISVP---KGDILRSFSAHDKPVSCLKISPDGSLLISGG-DDGVIATVPIF  155 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~  155 (387)
                      .....+..++|+|++++|++++. ++.|.+||+.   ..+.+..+.. ...+.+++|+|+++++++++ .++.|++||+.
T Consensus        81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A           81 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence            44558899999999998876654 7889999994   3344555543 34688999999999888877 89999999993


Q ss_pred             cccccCCCCCCCCccce--E--eeec-cCCCeEEEEEeeCCCCceE-EEEeCCCcEEEEeCCC--CcE--EEEEe-c---
Q 035621          156 QLVDEHTDDKNPDDLML--Q--KFVA-HNDSVTAITCCIGSFNSII-ISCSMDCTCKFWRLLN--GTH--LSTVT-F---  221 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~--~--~~~~-~~~~i~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~--~~~--~~~~~-~---  221 (387)
                      .           .....  .  .... ....+..++|+|++  +++ +++..++.|.+||+..  ++.  ...+. .   
T Consensus       160 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~pdg--~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~  226 (343)
T 1ri6_A          160 D-----------DGHLVAQDPAEVTTVEGAGPRHMVFHPNE--QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN  226 (343)
T ss_dssp             T-----------TSCEEEEEEEEEECSTTCCEEEEEECTTS--SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred             C-----------CCceeeecccccccCCCCCcceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc
Confidence            2           02111  1  2222 33477889999885  655 4555889999999953  432  22332 1   


Q ss_pred             ---CCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe-CCCc
Q 035621          222 ---PCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA-EDGS  296 (387)
Q Consensus       222 ---~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~  296 (387)
                         ...+..++|+|++++|+++. .++.|.+|++......     .........+. .+..++|+|+|++|++++ .++.
T Consensus       227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~-----~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~  300 (343)
T 1ri6_A          227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV-----LSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHH  300 (343)
T ss_dssp             CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC-----EEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCE
T ss_pred             ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc-----eEEeeeecCCC-ccceEEECCCCCEEEEecCCCCe
Confidence               23566899999999887554 6899999999731110     11111122233 388999999999888877 6899


Q ss_pred             EEEEE--CCCccE--EEEeecccCCCceeEEEEecC
Q 035621          297 VYIWE--IEKRQV--VMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       297 i~iwd--~~~~~~--~~~~~~~~~~~v~~~~~~~~~  328 (387)
                      |.+|+  ..++++  +..+..  ...+.+++|.+..
T Consensus       301 v~v~~~d~~~g~~~~~~~~~~--g~~p~~i~~~~~~  334 (343)
T 1ri6_A          301 ISVYEIVGEQGLLHEKGRYAV--GQGPMWVVVNAHE  334 (343)
T ss_dssp             EEEEEEETTTTEEEEEEEEEC--SSSCCEEEEEEEC
T ss_pred             EEEEEEcCCCceeeEcccccc--CCCCeeEEEEccc
Confidence            99995  446644  333332  3456677766533

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=1e-25  Score=213.87  Aligned_cols=290  Identities=12%  Similarity=0.100  Sum_probs=203.0

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCcee-EeccCCC-----------------CCceeEEEcCccceeeeccccCCCC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAIL-AHFSGSR-----------------SPRRGLTFAGKPFIAASHISPTTGS   63 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~~~~~~~~~~~d   63 (387)
                      +.|+  |+.+++++.++ | +||+.+++.+ ..+..|.                 ..|.+++|+|+..+...      .+
T Consensus        31 ~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~------~~  100 (706)
T 2z3z_A           31 LQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF------TQ  100 (706)
T ss_dssp             CEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE------ET
T ss_pred             CcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE------EC
Confidence            3566  55667777777 8 9999999873 3333332                 56999999998444432      45


Q ss_pred             CeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC-----CceeEEccCCCCC-----------
Q 035621           64 GSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPK-----GDILRSFSAHDKP-----------  127 (387)
Q Consensus        64 ~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~-----------  127 (387)
                      +.+++||+.+++......+...+..++|+|||++|+++ .++.|++||+.+     ++.......+...           
T Consensus       101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee  179 (706)
T 2z3z_A          101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE  179 (706)
T ss_dssp             TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred             CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence            99999999988776666677789999999999999985 679999999988     7766544443332           


Q ss_pred             ---eEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEeCCcccccCCCCCCCCccc
Q 035621          128 ---VSCLKISPDGSLLISGG---------------------------------DDGVIATVPIFQLVDEHTDDKNPDDLM  171 (387)
Q Consensus       128 ---v~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~  171 (387)
                         +.+++|+|||++|++++                                 .+..|++||+.            ....
T Consensus       180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~------------~~~~  247 (706)
T 2z3z_A          180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA------------TGKT  247 (706)
T ss_dssp             TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT------------TTEE
T ss_pred             cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC------------CCce
Confidence               48999999999999987                                 44679999983            2222


Q ss_pred             eEee--eccCCCeEEEEEeeCCCCceEEEEeCCC-----cEEEEeCCCCcEEEEEe---cCC---ceeEEEeCC--CCCe
Q 035621          172 LQKF--VAHNDSVTAITCCIGSFNSIIISCSMDC-----TCKFWRLLNGTHLSTVT---FPC---AIMGLALDP--TETD  236 (387)
Q Consensus       172 ~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~---~~~---~v~~~~~~~--~~~~  236 (387)
                      ....  ..|...+..++|+|++  +.|++++.++     .|++||+.+++....+.   ...   .+..++|+|  +|++
T Consensus       248 ~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~  325 (706)
T 2z3z_A          248 VYLQTGEPKEKFLTNLSWSPDE--NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF  325 (706)
T ss_dssp             EECCCCSCTTCEEEEEEECTTS--SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE
T ss_pred             EeeccCCCCceeEeeEEEECCC--CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE
Confidence            2221  2466789999999985  7888877765     89999999984443332   222   246789999  9999


Q ss_pred             EEEEccCCcEEEEeccccccccccccceeEeecccccccEEE-EEEecCCCEEEEEeC-CC----cEEEEECCCccEEEE
Q 035621          237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS-VMMMNEGKNLVSAAE-DG----SVYIWEIEKRQVVMV  310 (387)
Q Consensus       237 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~  310 (387)
                      ++++..++.+.+|++...       +.... .+..|...+.. ++|+|+++.|+.++. ++    .|..||+.+++ +..
T Consensus       326 l~~~~~~g~~~l~~~~~~-------~~~~~-~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~  396 (706)
T 2z3z_A          326 IWQSRRDGWNHLYLYDTT-------GRLIR-QVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKD  396 (706)
T ss_dssp             EEEECTTSSCEEEEEETT-------SCEEE-ECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEE
T ss_pred             EEEEccCCccEEEEEECC-------CCEEE-ecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-cee
Confidence            999999999999988631       12222 22356667776 799999998765544 44    67777887776 334


Q ss_pred             eecccCCCceeEEEEec
Q 035621          311 LKNELAGSISEMVIATG  327 (387)
Q Consensus       311 ~~~~~~~~v~~~~~~~~  327 (387)
                      +. + ...+..+.|++.
T Consensus       397 l~-~-~~~~~~~~~spd  411 (706)
T 2z3z_A          397 LT-P-ESGMHRTQLSPD  411 (706)
T ss_dssp             SC-C-SSSEEEEEECTT
T ss_pred             cc-C-CCceEEEEECCC
Confidence            43 2 335667777653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=6.7e-25  Score=208.36  Aligned_cols=272  Identities=12%  Similarity=0.082  Sum_probs=198.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-----CCc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-----STP   76 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-----~~~   76 (387)
                      ++|||| +.++.+. ++.|++||+.+++... +..+...+.+++|+|++...+.     ..++.|++|++.+     ++.
T Consensus        87 ~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~-----~~~~~i~v~~~~~~~~~~g~~  158 (706)
T 2z3z_A           87 TLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAY-----VRNHNLYIARGGKLGEGMSRA  158 (706)
T ss_dssp             EEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEE-----EETTEEEEEECBCTTSCCCCC
T ss_pred             EEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEE-----EECCeEEEEecCcccccCCCc
Confidence            579999 5555543 5999999998887654 4456777999999997755443     3679999999998     776


Q ss_pred             ccccCCCCC---------------eeeEEeccCCCEEEEec---------------------------------CCCcEE
Q 035621           77 LHNIPVPEP---------------VAPLATTADGSYLFTGG---------------------------------LSGNVY  108 (387)
Q Consensus        77 ~~~~~~~~~---------------v~~~~~~~~~~~l~~~~---------------------------------~dg~i~  108 (387)
                      .........               +.++.|+|||++|++++                                 .+..|+
T Consensus       159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~  238 (706)
T 2z3z_A          159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG  238 (706)
T ss_dssp             EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred             EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence            654443322               58999999999999987                                 346799


Q ss_pred             EEeCCCCceeEEcc--CCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCcccccCCCCCCCCccceEeee--ccC
Q 035621          109 AISVPKGDILRSFS--AHDKPVSCLKISPDGSLLISGGDDG-----VIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHN  179 (387)
Q Consensus       109 i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~  179 (387)
                      +||+.+++......  .|...+.+++|+|||++|++++.++     .|++||+.            .+.....+.  .+.
T Consensus       239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~------------~g~~~~~~~~~~~~  306 (706)
T 2z3z_A          239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAE------------TGRFVRTLFVETDK  306 (706)
T ss_dssp             EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETT------------TCCEEEEEEEEECS
T ss_pred             EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC------------CCceeeEEEEccCC
Confidence            99999887654432  4667899999999999999988776     89999983            331222221  122


Q ss_pred             C---CeEEEEEee--CCCCceEEEEeCCCcEEEEeCC-CCcEEEEEe-cCCceeE-EEeCCCCCeEEEEcc-CC----cE
Q 035621          180 D---SVTAITCCI--GSFNSIIISCSMDCTCKFWRLL-NGTHLSTVT-FPCAIMG-LALDPTETDFFAAGS-DG----LI  246 (387)
Q Consensus       180 ~---~i~~~~~~~--~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~v~~-~~~~~~~~~l~~~~~-dg----~i  246 (387)
                      .   .+..++|+|  ++  +++++++.|+.+++|++. ++..+..+. +...+.. ++|+|+++.|+.++. ++    .|
T Consensus       307 ~~~~~~~~~~~sp~~dg--~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l  384 (706)
T 2z3z_A          307 HYVEPLHPLTFLPGSNN--QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF  384 (706)
T ss_dssp             SCCCCCSCCEECTTCSS--EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred             CeECccCCceeecCCCC--EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence            2   246788998  64  799999999999999886 566666665 4455666 799999998876655 44    55


Q ss_pred             EEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC----CcEEEEECCCcc
Q 035621          247 YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED----GSVYIWEIEKRQ  306 (387)
Q Consensus       247 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~  306 (387)
                      +.||...+.         ...+  .|...+.+++|+|||++|+..+.+    +.|++||+.+++
T Consensus       385 ~~~d~~~~~---------~~~l--~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          385 YCIDIKGGK---------TKDL--TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEEETTCCC---------CEES--CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEEEcCCCC---------ceec--cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            556655421         1111  256678999999999988876443    469999999887

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=1.4e-25  Score=189.91  Aligned_cols=254  Identities=13%  Similarity=0.053  Sum_probs=189.3

Q ss_pred             eCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CCcccccCCC--CCeeeEE
Q 035621           14 SSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-STPLHNIPVP--EPVAPLA   90 (387)
Q Consensus        14 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~~~~~~~~--~~v~~~~   90 (387)
                      ++.++.|++||+.+++... +..|...+.+++|+|++...+.    + .++.|.+||+.+ ++........  ..+.+++
T Consensus        18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~----~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   91 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLL----N-SEGLLYRLSLAGDPSPEKVDTGFATICNNDHG   91 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEE----E-ETTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred             CCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEE----E-cCCeEEEEeCCCCCCceEeccccccccccceE
Confidence            4678999999999887664 4558889999999997665543    3 488999999998 7776655433  6789999


Q ss_pred             eccCCCEEEEec--CCC--cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCcccccCCCCC
Q 035621           91 TTADGSYLFTGG--LSG--NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI-SGGDDGVIATVPIFQLVDEHTDDK  165 (387)
Q Consensus        91 ~~~~~~~l~~~~--~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~  165 (387)
                      |+|++++|++++  .++  .|..++..+++ ...+..+ ..+..++|+|++++|+ +++.++.+++|++..         
T Consensus        92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~---------  160 (297)
T 2ojh_A           92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI---------  160 (297)
T ss_dssp             ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEET---------
T ss_pred             ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEEC---------
Confidence            999999999988  333  45555555555 3444433 3489999999999877 778899999998621         


Q ss_pred             CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCCcEEEEeCC-CCcEEEEEe-cCCceeEEEeCCCCCeEEEEcc
Q 035621          166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDCTCKFWRLL-NGTHLSTVT-FPCAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~  242 (387)
                        .......+..+...+.+++|+|++  +.++.++ .++.+++|++. .+.....+. +...+..++|+|++++|++++.
T Consensus       161 --~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          161 --DSGVETRLTHGEGRNDGPDYSPDG--RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             --TTCCEEECCCSSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred             --CCCcceEcccCCCccccceECCCC--CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence              222345566778889999999885  6666555 58999999886 455555554 5567889999999999998877


Q ss_pred             C-----------CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621          243 D-----------GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG  295 (387)
Q Consensus       243 d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  295 (387)
                      +           +.|++||+..+..       ........|...+..++|+|++++|++++.+.
T Consensus       237 ~~~~~~~~~~~~~~l~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          237 DADVFDHPRDLDVRVQLMDMDGGNV-------ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             ETTCCSCCSSEEEEEEEEETTSCSC-------EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCCCcccccCceEEEEEecCCCCc-------eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            5           5699999876421       11112235778899999999999998877654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=3.1e-25  Score=218.88  Aligned_cols=291  Identities=9%  Similarity=0.054  Sum_probs=213.5

Q ss_pred             ccccCCCcEEEeeCCC------CcEEEEeCCCCceeE-------------------------------------------
Q 035621            2 LHHLPCNEVILTSSPE------GPITAYNPSSGAILA-------------------------------------------   32 (387)
Q Consensus         2 l~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~-------------------------------------------   32 (387)
                      ++|||||+++++++.+      ..|++|++.+++...                                           
T Consensus       112 ~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~  191 (1045)
T 1k32_A          112 AGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEV  191 (1045)
T ss_dssp             EEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred             ccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEEC
Confidence            5799999977777754      357778876554321                                           


Q ss_pred             ------eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CCcccccCCCCCeeeEEeccCCCEEEEecCCC
Q 035621           33 ------HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-STPLHNIPVPEPVAPLATTADGSYLFTGGLSG  105 (387)
Q Consensus        33 ------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  105 (387)
                            .+.+|...+.++.|+++..+     ++++.++.+.+|.+.. +.....+.....+...+|+|+|+.|+.+ .++
T Consensus       192 ~~~~~~~l~~~~~~v~~~~~s~d~l~-----~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~  265 (1045)
T 1k32_A          192 NSGAFKKIVDMSTHVSSPVIVGHRIY-----FITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGG  265 (1045)
T ss_dssp             ETTEEEEEECCSSCCEEEEEETTEEE-----EEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETT
T ss_pred             CCCCeEECcCCCCcccceEEeCCEEE-----EEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCC
Confidence                  12345566777777776322     2256788889998754 4444445444557778999999999887 589


Q ss_pred             cEEEEeCCCCceeEEccC-----------CCCCeEEEEEc-CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceE
Q 035621          106 NVYAISVPKGDILRSFSA-----------HDKPVSCLKIS-PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQ  173 (387)
Q Consensus       106 ~i~i~d~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  173 (387)
                      .|++||+...+ +..+..           |...+.+++|+ |+|+++++++ ++.|.+|++.            .. ...
T Consensus       266 ~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~------------~~-~~~  330 (1045)
T 1k32_A          266 SIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS------------GT-YVL  330 (1045)
T ss_dssp             EEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT------------SS-BEE
T ss_pred             EEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC------------CC-ceE
Confidence            99999995444 445554           33468999999 9999998887 7899999982            22 233


Q ss_pred             eeeccCC-CeEEEEEeeCCCCceEEEEeCCCcEE-EEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEec
Q 035621          174 KFVAHND-SVTAITCCIGSFNSIIISCSMDCTCK-FWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLL  251 (387)
Q Consensus       174 ~~~~~~~-~i~~~~~~~~~~~~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  251 (387)
                      .+..|.. .+..++|+ +  ++.|++++.++.+. +||+.+++......+...+..++|+|+|++|++++.++.|++||+
T Consensus       331 ~~~~~~~~~~~~~~~s-d--g~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~  407 (1045)
T 1k32_A          331 KVPEPLRIRYVRRGGD-T--KVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL  407 (1045)
T ss_dssp             ECSCCSCEEEEEECSS-S--EEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EccCCCcceEEeeeEc-C--CCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEEC
Confidence            4556666 88889888 5  58888888888888 999988765443345578999999999999999999999999999


Q ss_pred             cccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC----------cEEEEECCCccEEEEeecccCCCcee
Q 035621          252 KYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG----------SVYIWEIEKRQVVMVLKNELAGSISE  321 (387)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~v~~  321 (387)
                      .++.         .......|...+.+++|+|||++|++++.++          .|++||+.+++ +..+..+. ..+..
T Consensus       408 ~tg~---------~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~-~~~~~  476 (1045)
T 1k32_A          408 ETGK---------PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN-SHDYA  476 (1045)
T ss_dssp             TTCC---------EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS-SBEEE
T ss_pred             CCCc---------eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC-cccCC
Confidence            8732         2233336888899999999999999887654          89999999987 55565553 35666


Q ss_pred             EEEEec
Q 035621          322 MVIATG  327 (387)
Q Consensus       322 ~~~~~~  327 (387)
                      +.|++.
T Consensus       477 ~~~spd  482 (1045)
T 1k32_A          477 PAFDAD  482 (1045)
T ss_dssp             EEECTT
T ss_pred             ceEcCC
Confidence            666543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=4.8e-25  Score=186.50  Aligned_cols=244  Identities=12%  Similarity=0.063  Sum_probs=182.3

Q ss_pred             CCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC-CceeEEccCC-CCCeEEEEEcCCC
Q 035621           60 TTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPK-GDILRSFSAH-DKPVSCLKISPDG  137 (387)
Q Consensus        60 ~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~-~~~v~~~~~~~~~  137 (387)
                      .+.++.|++||+.+++......+...+.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg   96 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG   96 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred             CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence            5688999999999988877777888999999999999999986 78999999998 8877666555 3678999999999


Q ss_pred             CEEEEEe--CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE-EEeCCCcEEEEeC--CC
Q 035621          138 SLLISGG--DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII-SCSMDCTCKFWRL--LN  212 (387)
Q Consensus       138 ~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~d~~i~iwd~--~~  212 (387)
                      ++|++++  .++...+|.+..          .. .....+..+ ..+..++|+|++  +.|+ +++.++.+++|++  .+
T Consensus        97 ~~l~~~~~~~~~~~~l~~~~~----------~~-~~~~~~~~~-~~~~~~~~spdg--~~l~~~~~~~~~~~l~~~~~~~  162 (297)
T 2ojh_A           97 ALYAISDKVEFGKSAIYLLPS----------TG-GTPRLMTKN-LPSYWHGWSPDG--KSFTYCGIRDQVFDIYSMDIDS  162 (297)
T ss_dssp             SEEEEEECTTTSSCEEEEEET----------TC-CCCEECCSS-SSEEEEEECTTS--SEEEEEEEETTEEEEEEEETTT
T ss_pred             CEEEEEEeCCCCcceEEEEEC----------CC-CceEEeecC-CCccceEECCCC--CEEEEEECCCCceEEEEEECCC
Confidence            9999998  445566665521          11 122333333 348889999885  5555 7888999999985  44


Q ss_pred             CcEEEEEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621          213 GTHLSTVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA  291 (387)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  291 (387)
                      ++......+...+.+++|+|+++++++++ .++.+.+|++....       ... ..+..|...+..++|+|++++|+++
T Consensus       163 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-------~~~-~~~~~~~~~~~~~~~s~dg~~l~~~  234 (297)
T 2ojh_A          163 GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-------SSV-ERITDSAYGDWFPHPSPSGDKVVFV  234 (297)
T ss_dssp             CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-------SCE-EECCCCSEEEEEEEECTTSSEEEEE
T ss_pred             CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC-------CCc-EEEecCCcccCCeEECCCCCEEEEE
Confidence            44433334667899999999999888766 48999999987421       112 2234567789999999999999988


Q ss_pred             eCC-----------CcEEEEECCCccEEEEe--ecccCCCceeEEEEec
Q 035621          292 AED-----------GSVYIWEIEKRQVVMVL--KNELAGSISEMVIATG  327 (387)
Q Consensus       292 ~~d-----------g~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~  327 (387)
                      +.+           +.|++||+.+++.....  ..+ .+.+..+.|++.
T Consensus       235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spd  282 (297)
T 2ojh_A          235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG-QGTMNSPNWSPD  282 (297)
T ss_dssp             EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEES-TTTSCSCCBCTT
T ss_pred             EcCCCCCcccccCceEEEEEecCCCCceeeeccCCC-CcccccceECCC
Confidence            766           56999999988764433  333 446777777643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=2.6e-24  Score=196.41  Aligned_cols=248  Identities=14%  Similarity=0.091  Sum_probs=192.1

Q ss_pred             EEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeC--CCCceeEEcc
Q 035621           45 TFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISV--PKGDILRSFS  122 (387)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~  122 (387)
                      +++|+..+.    ++++.+++|.+||..+++++..+.....+..++|+|+|++|++++.++.|.+||+  .+++.+..+.
T Consensus       144 ~~~p~~~~~----vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          144 DLDLPNLFS----VTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             CCCGGGEEE----EEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             ccCCCCEEE----EEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence            367754433    3478899999999999999988885555899999999999999999999999999  8888888887


Q ss_pred             CCCCCeEEEEEcC----CCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeec----------cCC-CeEEEE
Q 035621          123 AHDKPVSCLKISP----DGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA----------HND-SVTAIT  186 (387)
Q Consensus       123 ~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~i~~~~  186 (387)
                       +...+..++|+|    +++++++++. +++|.+||.            .+.+++..+..          |.. .+..+.
T Consensus       220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~------------~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~  286 (543)
T 1nir_A          220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG------------ETLEPKQIVSTRGMTVDTQTYHPEPRVAAII  286 (543)
T ss_dssp             -CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET------------TTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred             -cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec------------cccccceeecccCcccCccccccCCceEEEE
Confidence             455689999999    9999999884 899999998            44455555543          223 688899


Q ss_pred             EeeCCCCceEEEEeCCCcEEEEeCCCCcEEE--EEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccc
Q 035621          187 CCIGSFNSIIISCSMDCTCKFWRLLNGTHLS--TVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQ  263 (387)
Q Consensus       187 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~  263 (387)
                      +++++ +.++++...+++|.+||+.+.+.+.  .+.+...+..++|+|+|+++++++ .++.|.+||..++.......  
T Consensus       287 ~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~--  363 (543)
T 1nir_A          287 ASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD--  363 (543)
T ss_dssp             ECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE--
T ss_pred             ECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec--
Confidence            99875 4778888889999999998876544  556677788999999999877665 58999999998843221110  


Q ss_pred             eeEeecccccccEEEEEEecC-CCEEEEEe-CCCcEEEEECCC-------ccEEEEeecccC
Q 035621          264 ELVTLANRHDGVVVSVMMMNE-GKNLVSAA-EDGSVYIWEIEK-------RQVVMVLKNELA  316 (387)
Q Consensus       264 ~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~  316 (387)
                         .-...|.+....+ ++|+ +.+++++. .|++|.+||+.+       +++++++..+..
T Consensus       364 ---~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~  421 (543)
T 1nir_A          364 ---VGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG  421 (543)
T ss_dssp             ---CSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred             ---cCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC
Confidence               0011355444443 5777 66677775 689999999998       899999998754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.94  E-value=6e-24  Score=184.35  Aligned_cols=281  Identities=12%  Similarity=0.072  Sum_probs=191.1

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCC-CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSR-SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      +++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++...   +++...++.|.+||+.+++....+
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~---~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTA---YVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEE---EEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEE---EEEeCCCCcEEEEeCCCCcEEEEE
Confidence            4688999999999999999999999999888876543 257899999976422   122567899999999998877666


Q ss_pred             CCCC-------CeeeEEeccCCCEEEEecCC------------CcEEEEeCCCCce---eEEccCCCCCeEEEEEcCCCC
Q 035621           81 PVPE-------PVAPLATTADGSYLFTGGLS------------GNVYAISVPKGDI---LRSFSAHDKPVSCLKISPDGS  138 (387)
Q Consensus        81 ~~~~-------~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~  138 (387)
                      ....       .+..++|+|+|+++++++.+            +.|.+||+.+++.   +..+. +...+.+++|+|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~  160 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS  160 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC
T ss_pred             EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc
Confidence            5332       37899999999999998865            8999999988543   33333 344688999999999


Q ss_pred             EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC--------------------C----CeEEEEEeeCCCCc
Q 035621          139 LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN--------------------D----SVTAITCCIGSFNS  194 (387)
Q Consensus       139 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~----~i~~~~~~~~~~~~  194 (387)
                       +++++.  .|.+||+..            ......+..+.                    .    ....+++.+++...
T Consensus       161 -l~~~~~--~i~~~d~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  225 (349)
T 1jmx_B          161 -LYVAGP--DIYKMDVKT------------GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD  225 (349)
T ss_dssp             -EEEESS--SEEEECTTT------------CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred             -EEEccC--cEEEEeCCC------------CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC
Confidence             665544  499999832            22222222111                    0    12334444332000


Q ss_pred             eEEEEeCCCcEEEEeCCCCcEEE-E-EecCCceeEEEeCC-CCCeEEEEccCCcEEEEeccccccccccccceeEeeccc
Q 035621          195 IIISCSMDCTCKFWRLLNGTHLS-T-VTFPCAIMGLALDP-TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANR  271 (387)
Q Consensus       195 ~l~s~~~d~~i~iwd~~~~~~~~-~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  271 (387)
                       .........+..+|..+++... . -.....+..++++| ++++++++  ++.|++||+.+..        ....+.  
T Consensus       226 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~--------~~~~~~--  292 (349)
T 1jmx_B          226 -PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK--------LIKAAN--  292 (349)
T ss_dssp             --CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE--------EEEEEE--
T ss_pred             -ccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe--------EEEEEc--
Confidence             0000000112224444443211 0 11456788999999 99999988  8899999998732        222221  


Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       272 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      ....+.+++|+|++++|++++.++.|++||+.+++.+..++..
T Consensus       293 ~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          293 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            2335678999999998888888999999999999999888654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=9.9e-25  Score=208.34  Aligned_cols=273  Identities=11%  Similarity=0.031  Sum_probs=200.6

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~   79 (387)
                      ++|||||++|++++. +.|++||+.++.  ....+..|...+..++|+|++...+.    + .++.|++||+.+++....
T Consensus       114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~----~-~~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSF----I-RGRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEE----E-ETTEEEEEETTTTEEEEC
T ss_pred             eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEE----E-eCCcEEEEecCCCCEEEe
Confidence            579999999999886 899999998873  45567778888999999998765443    2 356999999988766554


Q ss_pred             cCCCCC-----------------eeeEEeccCCCEEEEecCCC---------------------------------cEEE
Q 035621           80 IPVPEP-----------------VAPLATTADGSYLFTGGLSG---------------------------------NVYA  109 (387)
Q Consensus        80 ~~~~~~-----------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i~i  109 (387)
                      ......                 +..++|+|||++|++++.|+                                 .|++
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~  267 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence            443221                 47899999999999987665                                 7899


Q ss_pred             EeCCC-CceeEEcc--CCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEeCCcccccCCCCCCCCccceEeeeccCC-
Q 035621          110 ISVPK-GDILRSFS--AHDKPVSCLKISPDGSLLISGGD-----DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND-  180 (387)
Q Consensus       110 ~d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  180 (387)
                      ||+.+ ++......  .|...+..++| |||++|++++.     +..|++||+            ........+..+.. 
T Consensus       268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~------------~~g~~~~~~~~~~~~  334 (741)
T 2ecf_A          268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL------------ASNQQRVLAHETSPT  334 (741)
T ss_dssp             ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET------------TTCCEEEEEEEECSS
T ss_pred             EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC------------CCCceEEEEEcCCCC
Confidence            99988 87655443  47778999999 99999987754     567999998            34444444444443 


Q ss_pred             ---CeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-CCcEEEEEe-cCCceeEE-EeCCCCCeEEEE-ccCC--cEEEEec
Q 035621          181 ---SVTAITCCIGSFNSIIISCSMDCTCKFWRLL-NGTHLSTVT-FPCAIMGL-ALDPTETDFFAA-GSDG--LIYKGLL  251 (387)
Q Consensus       181 ---~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~v~~~-~~~~~~~~l~~~-~~dg--~i~i~d~  251 (387)
                         .+..++|+|++  +++++++.|+.+++|.+. ++. ...+. +...+..+ .|+|+++.|+.. +.++  .+++|++
T Consensus       335 ~~~~~~~~~~spdg--~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~  411 (741)
T 2ecf_A          335 WVPLHNSLRFLDDG--SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV  411 (741)
T ss_dssp             CCCCCSCCEECTTS--CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred             cCCcCCceEECCCC--eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence               45678999885  688999999988888765 344 55554 45667777 599999987655 4455  8999998


Q ss_pred             cccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC----CcEEEEECCCc
Q 035621          252 KYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED----GSVYIWEIEKR  305 (387)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~  305 (387)
                      ....       .....+ . ....+..++|+|||++|+....+    ..+.+|+...+
T Consensus       412 ~~~g-------~~~~~l-~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          412 PLQG-------GQPQRL-S-KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             ETTC-------CCCEEC-C-CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             EcCC-------CCeeec-c-cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            6521       111222 1 25567899999999988866443    46899997654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=2.9e-24  Score=211.96  Aligned_cols=297  Identities=13%  Similarity=0.094  Sum_probs=218.8

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccC-----------CCCCceeEEEc-CccceeeeccccCCCCCeEEEE
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSG-----------SRSPRRGLTFA-GKPFIAASHISPTTGSGSVHLY   69 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~~~~~~~~~~~d~~v~vw   69 (387)
                      .+|||||+.|+.+. ++.|++||+...+ +..+.+           |...+.+++|+ |++...+.    ++ ++.+.+|
T Consensus       250 ~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~----~~-~~~i~~~  322 (1045)
T 1k32_A          250 RHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF----VS-RGQAFIQ  322 (1045)
T ss_dssp             EEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE----EE-TTEEEEE
T ss_pred             eeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEE----EE-cCEEEEE
Confidence            47899999999884 7999999995444 445554           33468999999 97654443    23 7899999


Q ss_pred             EccCCCcccccCCCC-CeeeEEeccCCCEEEEecCCCcEE-EEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC
Q 035621           70 NLWSSTPLHNIPVPE-PVAPLATTADGSYLFTGGLSGNVY-AISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG  147 (387)
Q Consensus        70 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  147 (387)
                      ++..++......+.. .+..++|+ +|+.|++++.++.+. +||+.+++... +..|...+..++|+|||++|++++.++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~  400 (1045)
T 1k32_A          323 DVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRF  400 (1045)
T ss_dssp             CTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTS
T ss_pred             cCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCC
Confidence            998877655555666 79999999 999999988888888 99998776544 447888999999999999999999999


Q ss_pred             cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC----------cEEEEeCCCCcEEE
Q 035621          148 VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC----------TCKFWRLLNGTHLS  217 (387)
Q Consensus       148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~----------~i~iwd~~~~~~~~  217 (387)
                      .|++||+            ..+........|...+.+++|+|++  ++|++++.++          .|++||+.+++...
T Consensus       401 ~v~~~d~------------~tg~~~~~~~~~~~~v~~~~~SpDG--~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~  466 (1045)
T 1k32_A          401 EIMTVDL------------ETGKPTVIERSREAMITDFTISDNS--RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA  466 (1045)
T ss_dssp             EEEEEET------------TTCCEEEEEECSSSCCCCEEECTTS--CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred             eEEEEEC------------CCCceEEeccCCCCCccceEECCCC--CeEEEEecCccccccCCCCCeEEEEECCCCcEEE
Confidence            9999999            4455555566888999999999985  8888777644          89999999887333


Q ss_pred             EEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc---------------------------------ccc-c
Q 035621          218 TVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM---------------------------------HKG-Q  263 (387)
Q Consensus       218 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------------------------------~~~-~  263 (387)
                      ...+...+..++|+|+|++|+.++.++....|+.........                                 ..+ .
T Consensus       467 l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~  546 (1045)
T 1k32_A          467 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY  546 (1045)
T ss_dssp             CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred             eeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHh
Confidence            333667788999999999999999887777776532211000                                 000 0


Q ss_pred             eeEeecccccccEEEEEEecCCCEEEE-------------EeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          264 ELVTLANRHDGVVVSVMMMNEGKNLVS-------------AAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       264 ~~~~~~~~~~~~v~~~~~s~~~~~l~s-------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      .....+..|.+.+..++++|+|+++++             ...+..|++||+.+++.....     ..+..+.|++
T Consensus       547 ~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-----~~v~~~~~S~  617 (1045)
T 1k32_A          547 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-----NNLTDLRLSA  617 (1045)
T ss_dssp             GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-----EEEEEEEECT
T ss_pred             HceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-----cCcceEEECC
Confidence            011122346678999999999987775             123557899999988764333     2355555443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=5.7e-23  Score=178.50  Aligned_cols=261  Identities=11%  Similarity=0.076  Sum_probs=199.7

Q ss_pred             CCCceeEEEcCccceeeeccccCC-----CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEE-ecCCCcEEEEe
Q 035621           38 RSPRRGLTFAGKPFIAASHISPTT-----GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFT-GGLSGNVYAIS  111 (387)
Q Consensus        38 ~~~v~~~~~~~~~~~~~~~~~~~~-----~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d  111 (387)
                      ...+..++|+|++.....  ....     .++.|.+||..+++....+.....+..++|+|+|+++++ ...++.|.+||
T Consensus        40 ~~~~~~~~~s~dg~~l~~--~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWL--ATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             ESSEEEEEEETTTTEEEE--EECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCccceEECCCCCEEEE--EcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            345788999996543321  1111     278999999999998888887777899999999996655 45578999999


Q ss_pred             CCCCceeEEccCCCCC---------eEEEEEcCCCCEEEEEe--CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC
Q 035621          112 VPKGDILRSFSAHDKP---------VSCLKISPDGSLLISGG--DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND  180 (387)
Q Consensus       112 ~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (387)
                      +.+++.+..+..+...         +.+++|+|+++++++++  .++.|.+||+            ........+..+..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~------------~~~~~~~~~~~~~~  185 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDG------------GNIKLKTAIQNTGK  185 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET------------TTTEEEEEECCCCT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC------------CCCceEEEecCCCC
Confidence            9999988877654322         78999999999877776  4788999999            45555666654566


Q ss_pred             CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec-----CCceeEEEeCCCCCeEEEEcc-CCcEEEEecccc
Q 035621          181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF-----PCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQ  254 (387)
Q Consensus       181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~  254 (387)
                      .+..++|+|++  +++++++.++.|.+||+.+++....+..     ...+..++|+|+++++++++. ++.|++||..+.
T Consensus       186 ~~~~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          186 MSTGLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             TCCCCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             ccceEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            67889999885  7888888899999999999998888764     345788999999998877765 599999999774


Q ss_pred             ccccccccceeEeecccccccEEEEEEecCCCEEEEEe-CCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          255 SRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA-EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      ..        ......+.   ...++|+|++++++.++ .++.|.+||..+++.+..+...  ..+..++|++.
T Consensus       264 ~~--------~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~d  324 (353)
T 3vgz_A          264 NI--------LAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--THPNSLALSAD  324 (353)
T ss_dssp             CE--------EEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC--SEEEEEEECTT
T ss_pred             cE--------EEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC--CCCCeEEEcCC
Confidence            32        22221111   25689999999665554 7899999999999999888754  36778887643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=7.2e-23  Score=177.52  Aligned_cols=274  Identities=8%  Similarity=0.112  Sum_probs=180.7

Q ss_pred             CCcEEEEeC--CCCceeE-eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc--ccc-cCCCCCeeeEE
Q 035621           17 EGPITAYNP--SSGAILA-HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP--LHN-IPVPEPVAPLA   90 (387)
Q Consensus        17 dg~i~iwd~--~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~--~~~-~~~~~~v~~~~   90 (387)
                      ++.|++|++  .+++... ....+...+..++|+|++.+.+..  ..+.++.|.+|++.+++.  +.. ..+...+..++
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~--~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVD--KEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEE--EETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEE--ecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence            455777655  4565433 233455668889999976532210  013478999999977653  222 22456788999


Q ss_pred             eccCCCEEEEec-CCCcEEEEeCC-CCc--eeEEccC---------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621           91 TTADGSYLFTGG-LSGNVYAISVP-KGD--ILRSFSA---------HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL  157 (387)
Q Consensus        91 ~~~~~~~l~~~~-~dg~i~i~d~~-~~~--~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  157 (387)
                      |+|+|++|++++ .++.+.+|++. ++.  .+..+..         +...+.+++|+|+++++++...++.|.+|++...
T Consensus        93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A           93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence            999999888887 67899999995 332  2333321         1224889999999996666667889999998310


Q ss_pred             cccCCCCCCCCccceEeeecc-CCCeEEEEEeeCCCCc-eEEEEeCCCcEEEEeCCC--CcE--EEEEe-cC------Cc
Q 035621          158 VDEHTDDKNPDDLMLQKFVAH-NDSVTAITCCIGSFNS-IIISCSMDCTCKFWRLLN--GTH--LSTVT-FP------CA  224 (387)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~--~~~--~~~~~-~~------~~  224 (387)
                               ........+..+ ......++|+|++  + +++++..++.|.+|++..  ++.  +..+. .+      ..
T Consensus       173 ---------g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  241 (347)
T 3hfq_A          173 ---------GQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNG  241 (347)
T ss_dssp             ---------SCEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCE
T ss_pred             ---------CcEEEeeeEEcCCCCCCceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCc
Confidence                     011112222222 2367789999885  6 445566789999999874  443  22222 12      45


Q ss_pred             eeEEEeCCCCCeEEEE-ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC-CcEEEE--
Q 035621          225 IMGLALDPTETDFFAA-GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED-GSVYIW--  300 (387)
Q Consensus       225 v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~i~iw--  300 (387)
                      +..++|+|+|++|+++ ..++.|.+|++.....      .........+...+..++|+|+|++|++++.+ +.|.+|  
T Consensus       242 ~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          242 AAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH------LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             EEEEEECTTSCEEEEEEETTTEEEEEEECGGGC------EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc------EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            8899999999988655 4589999999974211      11222223455668899999999988887754 899999  


Q ss_pred             ECCCccEEE
Q 035621          301 EIEKRQVVM  309 (387)
Q Consensus       301 d~~~~~~~~  309 (387)
                      |..++++..
T Consensus       316 d~~tg~l~~  324 (347)
T 3hfq_A          316 DLTSGKLSL  324 (347)
T ss_dssp             CTTTCCEEE
T ss_pred             eCCCCeEEe
Confidence            556677654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=2.2e-23  Score=180.31  Aligned_cols=238  Identities=9%  Similarity=0.035  Sum_probs=170.5

Q ss_pred             ccccCCCcEEEeeCCC-CcEEEEeCC--CCc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc---C
Q 035621            2 LHHLPCNEVILTSSPE-GPITAYNPS--SGA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW---S   73 (387)
Q Consensus         2 l~~s~~~~~l~~~~~d-g~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~---~   73 (387)
                      ++|+|+|++|++++.+ +.|.+|++.  +++  .+..+..+. .+..++|+|++....   +++..++.|.+||+.   .
T Consensus        43 ~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~---~~~~~~~~i~~~d~~~~~~  118 (343)
T 1ri6_A           43 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVF---VGSYNAGNVSVTRLEDGLP  118 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEE---EEETTTTEEEEEEEETTEE
T ss_pred             EEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEE---EEecCCCeEEEEECCCCcc
Confidence            5799999988888776 899999987  554  344555444 789999999764322   124568999999994   3


Q ss_pred             CCcccccCCCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCC-CceeE----EccC-CCCCeEEEEEcCCCCEEEEEe-C
Q 035621           74 STPLHNIPVPEPVAPLATTADGSYLFTGG-LSGNVYAISVPK-GDILR----SFSA-HDKPVSCLKISPDGSLLISGG-D  145 (387)
Q Consensus        74 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~-~  145 (387)
                      .+....+.....+.+++|+|+++++++++ .++.|.+||+.+ ++...    .+.. ....+.+++|+|+++++++++ .
T Consensus       119 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~  198 (343)
T 1ri6_A          119 VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL  198 (343)
T ss_dssp             EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC
Confidence            44555556667799999999999888877 889999999987 65432    2222 345788999999999776554 7


Q ss_pred             CCcEEEEeCCcccccCCCCCCCCccceEeee---cc---CCCeEEEEEeeCCCCceEE-EEeCCCcEEEEeCC--C--Cc
Q 035621          146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFV---AH---NDSVTAITCCIGSFNSIII-SCSMDCTCKFWRLL--N--GT  214 (387)
Q Consensus       146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~i~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~--~--~~  214 (387)
                      ++.|.+|++....        ..........   ..   ...+..++|+|++  ++|+ ++..++.|.+||+.  +  .+
T Consensus       199 ~~~i~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg--~~l~v~~~~~~~i~v~d~~~~~~~~~  268 (343)
T 1ri6_A          199 NSSVDVWELKDPH--------GNIECVQTLDMMPENFSDTRWAADIHITPDG--RHLYACDRTASLITVFSVSEDGSVLS  268 (343)
T ss_dssp             TTEEEEEESSCTT--------SCCEEEEEEECSCTTCCSCCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred             CCEEEEEEecCCC--------CcEEEEeeccccCccccccCCccceEECCCC--CEEEEEecCCCEEEEEEEcCCCCceE
Confidence            8999999983210        0011111221   11   2356679999875  5555 56679999999998  2  34


Q ss_pred             EEEEEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccc
Q 035621          215 HLSTVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKY  253 (387)
Q Consensus       215 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~  253 (387)
                      .+..+.....+..++|+|++++|++++ .++.|.+|++..
T Consensus       269 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          269 KEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             EEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             EeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            555555555689999999999998888 589999997654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.93  E-value=9.5e-24  Score=195.85  Aligned_cols=266  Identities=13%  Similarity=0.089  Sum_probs=190.3

Q ss_pred             ccccCCCcEEEeeCC-CCcEEEEeCCCCceeEeccCCC-CCceeEEEcCccceeeeccccCCCCCeEEEEEccC--CCcc
Q 035621            2 LHHLPCNEVILTSSP-EGPITAYNPSSGAILAHFSGSR-SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS--STPL   77 (387)
Q Consensus         2 l~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~--~~~~   77 (387)
                      ++|+|||++||+++. ||++.||++.+++.. .+..|. ..+..++|+|+ .+....-. ...+....+|.+..  ....
T Consensus        27 ~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~-~~g~~~~~l~~~~~~~~g~~  103 (582)
T 3o4h_A           27 LQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDV-SKGAEQHALFKVNTSRPGEE  103 (582)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEEC-STTSCCEEEEEEETTSTTCC
T ss_pred             eecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEecc-CCCCcceEEEEEeccCCCcc
Confidence            578999999999886 999999998666654 454455 67999999998 33322100 12245556655543  2222


Q ss_pred             cccCCCCCeeeEEeccCCCE-EEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEE
Q 035621           78 HNIPVPEPVAPLATTADGSY-LFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD----GVIATV  152 (387)
Q Consensus        78 ~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw  152 (387)
                      ..+.........+|+|+|+. +++.+.++.+.+||+.+++.......+ .  .+++|+|||+++++++.+    +.|++|
T Consensus       104 ~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~  180 (582)
T 3o4h_A          104 QRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTS  180 (582)
T ss_dssp             EECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             ccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEE
Confidence            23433344557788998863 333344455669999888765554433 2  789999999999988877    789999


Q ss_pred             eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC--cEEEEeCCCCcEEEEEe-cCCceeEEE
Q 035621          153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC--TCKFWRLLNGTHLSTVT-FPCAIMGLA  229 (387)
Q Consensus       153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~-~~~~v~~~~  229 (387)
                      |+            ..+ ....+..|...+..++|+|++  +.|+++..++  .|++||+.+++.. .+. +...+..++
T Consensus       181 d~------------~~g-~~~~l~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~  244 (582)
T 3o4h_A          181 NL------------SSG-GLRVFDSGEGSFSSASISPGM--KVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR  244 (582)
T ss_dssp             ET------------TTC-CCEEECCSSCEEEEEEECTTS--CEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC
T ss_pred             cC------------CCC-CceEeecCCCccccceECCCC--CEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh
Confidence            98            222 234667888889999999985  8888888888  8999999998877 444 445566666


Q ss_pred             --------eCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC---cEE
Q 035621          230 --------LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG---SVY  298 (387)
Q Consensus       230 --------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~  298 (387)
                              |+|||..+++++.++.+++|++  +...         .   ...+.+.+++|+ +++++++++.+.   .++
T Consensus       245 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~---------~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~  309 (582)
T 3o4h_A          245 PTAITWLGYLPDGRLAVVARREGRSAVFID--GERV---------E---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIV  309 (582)
T ss_dssp             CSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE---------C---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             hccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee---------c---cCCCceEEEEec-CCEEEEEEcCCCCCCeEE
Confidence                    9999988888999999999998  2111         0   234568899999 999999888774   477


Q ss_pred             EEECCC
Q 035621          299 IWEIEK  304 (387)
Q Consensus       299 iwd~~~  304 (387)
                      +||..+
T Consensus       310 ~~d~~~  315 (582)
T 3o4h_A          310 SLPSGE  315 (582)
T ss_dssp             EETTCC
T ss_pred             EEcCCC
Confidence            777654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.92  E-value=8.3e-22  Score=171.79  Aligned_cols=303  Identities=14%  Similarity=0.123  Sum_probs=192.3

Q ss_pred             cCCCcEEEeeC----CCCcEEEEeC--CCCceeEeccCCCCCceeEEEcCccceeeeccccCCC----CCeEEEEEccC-
Q 035621            5 LPCNEVILTSS----PEGPITAYNP--SSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTG----SGSVHLYNLWS-   73 (387)
Q Consensus         5 s~~~~~l~~~~----~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----d~~v~vw~~~~-   73 (387)
                      .+...+++.|+    .++.|++|++  .+++.......+...+..++|+|++..+..    ++.    ++.+.+|++.. 
T Consensus        10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~----~~~~~~~~~~v~~~~~~~~   85 (361)
T 3scy_A           10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYS----VNEFSKDQAAVSAFAFDKE   85 (361)
T ss_dssp             GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEE----EECCSSTTCEEEEEEEETT
T ss_pred             CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEE----EEccCCCCCcEEEEEEeCC
Confidence            34455666664    4567899866  456543322226677889999997654332    333    48999999876 


Q ss_pred             -CCc--ccccC-CCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCCCceeEEc------cC--------CCCCeEEEEEc
Q 035621           74 -STP--LHNIP-VPEPVAPLATTADGSYLFTGG-LSGNVYAISVPKGDILRSF------SA--------HDKPVSCLKIS  134 (387)
Q Consensus        74 -~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~------~~--------~~~~v~~~~~~  134 (387)
                       ++.  +.... +......+++  ++++|++++ .++.|.+|++.....+..+      .+        +...+.+++|+
T Consensus        86 ~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s  163 (361)
T 3scy_A           86 KGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT  163 (361)
T ss_dssp             TTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC
T ss_pred             CCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC
Confidence             332  22222 3345667777  788777765 5789999999754332211      11        12345889999


Q ss_pred             CCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCC-ccc----eEeeeccCCCeEEEEEeeCCCCceEEEEe-CCCcEEE
Q 035621          135 PDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPD-DLM----LQKFVAHNDSVTAITCCIGSFNSIIISCS-MDCTCKF  207 (387)
Q Consensus       135 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~i  207 (387)
                      |+++++++++ .++.|.+|++.......    ... ...    ......+......++|+|++  +++++++ .++.|.+
T Consensus       164 pdg~~l~~~~~~~~~v~v~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~v~~~~~~~v~v  237 (361)
T 3scy_A          164 PDGKYLLADDLGTDQIHKFNINPNANAD----NKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG--KFAYLINEIGGTVIA  237 (361)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTCCTT----TCCCCEEEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTCEEEE
T ss_pred             CCCCEEEEEeCCCCEEEEEEEcCCCCcc----cccceeecccccceecCCCCCCeEEEEcCCC--CEEEEEcCCCCeEEE
Confidence            9999766655 58899999883210000    000 000    11122344567889999885  6666665 6899999


Q ss_pred             EeCCCCcE--EEEEec----CCceeEEEeCCCCCeEEEEccC--CcEEEEeccccccccccccceeEeecccccccEEEE
Q 035621          208 WRLLNGTH--LSTVTF----PCAIMGLALDPTETDFFAAGSD--GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV  279 (387)
Q Consensus       208 wd~~~~~~--~~~~~~----~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  279 (387)
                      ||+.+++.  +..+..    ...+..++|+|+|++|+++..+  +.|.+|++......     ......... ...+..+
T Consensus       238 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~-----~~~~~~~~~-g~~~~~~  311 (361)
T 3scy_A          238 FRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT-----LTKVGYQLT-GIHPRNF  311 (361)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC-----EEEEEEEEC-SSCCCEE
T ss_pred             EEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc-----EEEeeEecC-CCCCceE
Confidence            99987754  233321    2346799999999999777654  89999999632110     111111112 4567899


Q ss_pred             EEecCCCEEEEEe-CCCcEEEE--ECCCccEEEEeecccCCCceeEEEE
Q 035621          280 MMMNEGKNLVSAA-EDGSVYIW--EIEKRQVVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       280 ~~s~~~~~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~  325 (387)
                      +|+|+|++|++++ .++.|.+|  |..++++...........+.++.|.
T Consensus       312 ~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          312 IITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            9999999888887 67899995  5557877665544344578888775

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=1.4e-22  Score=174.43  Aligned_cols=233  Identities=15%  Similarity=0.143  Sum_probs=171.7

Q ss_pred             ccccCCCcEEEeeC-CCCcEEEEeCCCCce-eEeccCCCCCceeEEEcCccceeeeccccCCCC-C--eEEEEEccCCCc
Q 035621            2 LHHLPCNEVILTSS-PEGPITAYNPSSGAI-LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS-G--SVHLYNLWSSTP   76 (387)
Q Consensus         2 l~~s~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d-~--~v~vw~~~~~~~   76 (387)
                      ++|+|+|+++++++ .++.|.+||+.+++. ...+..+..+..+++|+|++.....    +..+ +  .|.+||+.+++.
T Consensus        45 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~----~~~~~~~~~i~v~d~~~~~~  120 (331)
T 3u4y_A           45 TAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVT----VTGLNHPFNMQSYSFLKNKF  120 (331)
T ss_dssp             EEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEE----CCCSSSSCEEEEEETTTTEE
T ss_pred             EEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEE----ecCCCCcccEEEEECCCCCe
Confidence            57999998665554 488999999999987 7777777776666999997654432    3334 3  999999999988


Q ss_pred             ccccCCCCCeeeEEeccCCCEEEEe-cCCCc-EEEEeCCCCcee----EEccCCCCCeEEEEEcCCCCEEEEE-eCCCcE
Q 035621           77 LHNIPVPEPVAPLATTADGSYLFTG-GLSGN-VYAISVPKGDIL----RSFSAHDKPVSCLKISPDGSLLISG-GDDGVI  149 (387)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i  149 (387)
                      +..+.....+.+++|+|+|++++++ ..++. |.+|++.....+    .........+..++|+|++++++++ ..++.|
T Consensus       121 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  200 (331)
T 3u4y_A          121 ISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSI  200 (331)
T ss_dssp             EEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeE
Confidence            8888777788999999999866655 45578 999998754332    1111334568999999999966555 468999


Q ss_pred             EEEeCCcccccCCCCCCCCccc---eEeeeccCCCeEEEEEeeCCCCceEE-EEeCCCcEEEEeCCCCcE--EEEEecC-
Q 035621          150 ATVPIFQLVDEHTDDKNPDDLM---LQKFVAHNDSVTAITCCIGSFNSIII-SCSMDCTCKFWRLLNGTH--LSTVTFP-  222 (387)
Q Consensus       150 ~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~--~~~~~~~-  222 (387)
                      .+||+.            ....   +..+.. ...+..++|+|++  ++++ +...++.|.+||+.+++.  +..+... 
T Consensus       201 ~v~d~~------------~~~~~~~~~~~~~-~~~~~~~~~spdg--~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~  265 (331)
T 3u4y_A          201 GILETQ------------NPENITLLNAVGT-NNLPGTIVVSRDG--STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGL  265 (331)
T ss_dssp             EEEECS------------STTSCEEEEEEEC-SSCCCCEEECTTS--SEEEEECSSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred             EEEECC------------CCcccceeeeccC-CCCCceEEECCCC--CEEEEEEcCCCEEEEEECCCCceeeeccccccc
Confidence            999983            3333   455543 3567789999885  6554 445578899999999877  4443321 


Q ss_pred             ----C---ceeEEEeCCCCCeEEEEcc-CCcEEEEeccc
Q 035621          223 ----C---AIMGLALDPTETDFFAAGS-DGLIYKGLLKY  253 (387)
Q Consensus       223 ----~---~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~  253 (387)
                          .   ....++|+|++++|++++. ++.|.+||+..
T Consensus       266 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          266 LIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             CCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             ccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence                1   2355899999998876655 67999999976

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=2.2e-23  Score=198.26  Aligned_cols=272  Identities=12%  Similarity=0.115  Sum_probs=189.6

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCC---CceeEEEcCccceeeeccccCC---------CCCeEEEE
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRS---PRRGLTFAGKPFIAASHISPTT---------GSGSVHLY   69 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~---------~d~~v~vw   69 (387)
                      ++|+|||++++++ .|+.|++||+.+++....+.+|..   .+.+++|+|++..++.    ++         .++.|++|
T Consensus        21 ~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~----~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           21 PNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYL----ESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEE----EEEEEECSSSCEEEEEEEE
T ss_pred             cEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEE----EecCceeEEeecceEEEEE
Confidence            5799999766655 589999999999988777765543   4899999997765443    33         27899999


Q ss_pred             EccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc-cCCCCCe-----------------EEE
Q 035621           70 NLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF-SAHDKPV-----------------SCL  131 (387)
Q Consensus        70 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v-----------------~~~  131 (387)
                      |+.+++.+........+..++|+|||+.|+.+. ++.|++|++.+++..... .++...|                 .++
T Consensus        96 d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           96 DLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             ETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             ECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            999887643233346789999999999999885 789999999888765433 2222222                 489


Q ss_pred             EEcCCCCEEEEEeCCC----------------------------------cEEEEeCCcccccCCCCCCCCccce-----
Q 035621          132 KISPDGSLLISGGDDG----------------------------------VIATVPIFQLVDEHTDDKNPDDLML-----  172 (387)
Q Consensus       132 ~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~-----  172 (387)
                      +|+|||++|++++.|.                                  .|++||+..            ....     
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~------------~~~~~~~~~  242 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY------------PAYVGPQEV  242 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC------------HHHHCCEEC
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC------------CCccceeEc
Confidence            9999999999988652                                  678888832            2211     


Q ss_pred             ---EeeeccCCCeEEEEEeeCCCCceEEEEeCC----CcEEEEe----CCCCcEEEEE-----ecCCcee-----EEEeC
Q 035621          173 ---QKFVAHNDSVTAITCCIGSFNSIIISCSMD----CTCKFWR----LLNGTHLSTV-----TFPCAIM-----GLALD  231 (387)
Q Consensus       173 ---~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----~~i~iwd----~~~~~~~~~~-----~~~~~v~-----~~~~~  231 (387)
                         ..+..|...+..++|+|++  +++++....    ..|.+||    +.+++....+     .+...+.     .+.|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~SpD~--~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s  320 (719)
T 1z68_A          243 PVPAMIASSDYYFSWLTWVTDE--RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFS  320 (719)
T ss_dssp             CCCHHHHTSCEEEEEEEESSSS--EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEEC
T ss_pred             cCCccCCCCcceEEEeEEeCCC--eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEEC
Confidence               1234577889999999984  677764432    2488899    7776654333     2344455     78999


Q ss_pred             CCCCeEEE--EccCCc--EEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC-----CcEEEEEC
Q 035621          232 PTETDFFA--AGSDGL--IYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED-----GSVYIWEI  302 (387)
Q Consensus       232 ~~~~~l~~--~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~  302 (387)
                      |||+.++.  ...+|.  |++|++..+.         ... +..+...+..+.++ +++.|+..+.+     +..++|.+
T Consensus       321 pdg~~l~~~~~~~~g~~~l~~~~~~~~~---------~~~-lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~  389 (719)
T 1z68_A          321 YDAISYYKIFSDKDGYKHIHYIKDTVEN---------AIQ-ITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRI  389 (719)
T ss_dssp             TTSSCEEEEEECTTSCEEEEEESSCSTT---------CEE-CSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             CCCCeEEEEEEccCCceEEEEEECCCCc---------eEe-cccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence            99997655  445554  5556654421         111 22345567777777 88877766554     78899987


Q ss_pred             CC
Q 035621          303 EK  304 (387)
Q Consensus       303 ~~  304 (387)
                      ..
T Consensus       390 ~~  391 (719)
T 1z68_A          390 SI  391 (719)
T ss_dssp             EC
T ss_pred             eC
Confidence            64

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=1.2e-22  Score=193.32  Aligned_cols=284  Identities=9%  Similarity=0.007  Sum_probs=192.6

Q ss_pred             ccccCCCcEEEeeCCC---------CcEEEEeCCCCceeEec---cCCCCCceeEEEcCccceeeeccccCCCCCeEEEE
Q 035621            2 LHHLPCNEVILTSSPE---------GPITAYNPSSGAILAHF---SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLY   69 (387)
Q Consensus         2 l~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw   69 (387)
                      ++|||||++|++++.+         +.|++||+.+++. ..+   .+|...+..++|+|++...+.    ++ ++.|++|
T Consensus        66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~----~~-~~~i~~~  139 (723)
T 1xfd_A           66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIF----IF-ENNIYYC  139 (723)
T ss_dssp             EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEE----EE-TTEEEEE
T ss_pred             EEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEE----EE-CCeEEEE
Confidence            5799999999998764         7788999998876 333   345556899999997755443    33 4799999


Q ss_pred             EccCCCcccccCC-CCC------------------eeeEEeccCCCEEEEecCCC-------------------------
Q 035621           70 NLWSSTPLHNIPV-PEP------------------VAPLATTADGSYLFTGGLSG-------------------------  105 (387)
Q Consensus        70 ~~~~~~~~~~~~~-~~~------------------v~~~~~~~~~~~l~~~~~dg-------------------------  105 (387)
                      |+.+++....... ...                  +.+++|+|||+.|++++.++                         
T Consensus       140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (723)
T 1xfd_A          140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (723)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence            9998877654443 222                  37899999999999887543                         


Q ss_pred             ---------cEEEEeCCCCceeEEccCC------CCCeEEEEEcCCCCEEEEEeC----CCcEEEEeCCcccccCCCCCC
Q 035621          106 ---------NVYAISVPKGDILRSFSAH------DKPVSCLKISPDGSLLISGGD----DGVIATVPIFQLVDEHTDDKN  166 (387)
Q Consensus       106 ---------~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~  166 (387)
                               .|++||+.+++....+..+      ...+..++|+|||+++++...    +..|++||+            
T Consensus       220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~------------  287 (723)
T 1xfd_A          220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA------------  287 (723)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET------------
T ss_pred             CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC------------
Confidence                     7999999888865666544      567899999999998877653    357999998            


Q ss_pred             CCccceEeeec-cCCCe----EEEEEeeCCCCceEEE--EeCCC------cEEEEe-CCCCc--EEEEEe-cCCceeE-E
Q 035621          167 PDDLMLQKFVA-HNDSV----TAITCCIGSFNSIIIS--CSMDC------TCKFWR-LLNGT--HLSTVT-FPCAIMG-L  228 (387)
Q Consensus       167 ~~~~~~~~~~~-~~~~i----~~~~~~~~~~~~~l~s--~~~d~------~i~iwd-~~~~~--~~~~~~-~~~~v~~-~  228 (387)
                      ..+.....+.. +...+    ..++|+|++  +.|+.  +..++      .|.+|| ...+.  +...+. ....+.. +
T Consensus       288 ~~g~~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~  365 (723)
T 1xfd_A          288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDG--RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKIL  365 (723)
T ss_dssp             TTCCEEEEEEEECSSCCCCCCCCCEECTTS--CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEE
T ss_pred             CCCcceEEEEeccCCEEeccCCCceEcCCC--CeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeee
Confidence            33444443333 33333    378899886  54443  55677      577777 34443  144444 3344554 6


Q ss_pred             EeCCCCCeEEEEccC---CcEEEEeccccccccccccceeEeecc--cccccEEEEEEecCCCEEEEEeCC-C--cEEEE
Q 035621          229 ALDPTETDFFAAGSD---GLIYKGLLKYQSRQQMHKGQELVTLAN--RHDGVVVSVMMMNEGKNLVSAAED-G--SVYIW  300 (387)
Q Consensus       229 ~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d-g--~i~iw  300 (387)
                      +|+|+|+.|+..+.+   +.+++|++......      ....+..  .|...+..++|+|+|++|+..... +  ...++
T Consensus       366 ~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~  439 (723)
T 1xfd_A          366 AYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF------NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVH  439 (723)
T ss_dssp             EEETTTTEEEEEESSSCTTCCEEEEECSSTTC------CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEE
T ss_pred             EEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC------CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEE
Confidence            999999999876554   78999998753211      1111111  156678899999999988865332 2  34456


Q ss_pred             ECCCccEEEEe
Q 035621          301 EIEKRQVVMVL  311 (387)
Q Consensus       301 d~~~~~~~~~~  311 (387)
                      +..+++.+..+
T Consensus       440 ~~~~~~~~~~~  450 (723)
T 1xfd_A          440 NTTDKKKMFDL  450 (723)
T ss_dssp             ETTTCCEEEEE
T ss_pred             ECCCCCEEEEe
Confidence            76666655444

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=3e-22  Score=178.09  Aligned_cols=235  Identities=11%  Similarity=0.036  Sum_probs=160.9

Q ss_pred             CccccCCCcEEEeeCCCCcEEEEeCCCC----------ceeEec-----cCCCCCceeEEEcCccceeeeccccCCCCCe
Q 035621            1 LLHHLPCNEVILTSSPEGPITAYNPSSG----------AILAHF-----SGSRSPRRGLTFAGKPFIAASHISPTTGSGS   65 (387)
Q Consensus         1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~   65 (387)
                      +|++++++.++++++.++ ++||+....          ..+...     ..+...|.+++|+|++.+++....+++.|+.
T Consensus        41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~  119 (434)
T 2oit_A           41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSI  119 (434)
T ss_dssp             CEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEE
T ss_pred             EEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCce
Confidence            478999999999999888 899875311          011111     1255679999999976544310015899999


Q ss_pred             EEEEEccCC--------Ccc---cccC-CCCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEE
Q 035621           66 VHLYNLWSS--------TPL---HNIP-VPEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLK  132 (387)
Q Consensus        66 v~vw~~~~~--------~~~---~~~~-~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~  132 (387)
                      |++||+.++        +.+   ..+. |...|.+++|+|+ +++|++++.||+|++||++++..+....+|...|++++
T Consensus       120 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~  199 (434)
T 2oit_A          120 IAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVC  199 (434)
T ss_dssp             EEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEE
T ss_pred             EEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEE
Confidence            999999764        221   2222 5678999999997 88999999999999999999877766677889999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec-------cCCCeEEEEEeeCCCCceEEE-EeCCC-
Q 035621          133 ISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA-------HNDSVTAITCCIGSFNSIIIS-CSMDC-  203 (387)
Q Consensus       133 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~l~s-~~~d~-  203 (387)
                      |+|+|++|++|+.||.|++||++             ......+..       |...+.+++|+++.  .++++ ...|| 
T Consensus       200 wspdg~~lasgs~dg~v~iwd~~-------------~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~--~~l~~~~~~dg~  264 (434)
T 2oit_A          200 WSPKGKQLAVGKQNGTVVQYLPT-------------LQEKKVIPCPPFYESDHPVRVLDVLWIGTY--VFAIVYAAADGT  264 (434)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTT-------------CCEEEEECCCTTCCTTSCEEEEEEEEEETT--EEEEEEEETTCC
T ss_pred             EcCCCCEEEEEcCCCcEEEEccC-------------CcccccccCCcccCCCCceeEEEEEEecCc--eEEEEEccCCCc
Confidence            99999999999999999999984             112222222       33478899998864  55543 33443 


Q ss_pred             -----cEEEEeCCCCc-----EEEEEec------C--CceeEEEeCCCCCeEEEEcc-CCcEEEEec
Q 035621          204 -----TCKFWRLLNGT-----HLSTVTF------P--CAIMGLALDPTETDFFAAGS-DGLIYKGLL  251 (387)
Q Consensus       204 -----~i~iwd~~~~~-----~~~~~~~------~--~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~  251 (387)
                           .+++|++++.+     ....+..      .  .+...+.+-++.+++++++. .+.|.++..
T Consensus       265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred             cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence                 38999998652     1122110      1  11122333366667666554 555666654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=1.5e-22  Score=174.62  Aligned_cols=242  Identities=12%  Similarity=0.049  Sum_probs=182.2

Q ss_pred             cccCCCCCeEEEEEccCCCcccccCCCC---CeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeEEccCC-----CCC
Q 035621           57 ISPTTGSGSVHLYNLWSSTPLHNIPVPE---PVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILRSFSAH-----DKP  127 (387)
Q Consensus        57 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~  127 (387)
                      +++++.++.|.+||+.+++.+..+....   .+..++|+|++++++ ++..++.|.+||+.+++.+..+...     ...
T Consensus         4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~   83 (337)
T 1pby_B            4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKS   83 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccc
Confidence            4457789999999999998888877666   689999999998765 5556789999999999888766531     125


Q ss_pred             eEEEEEcCCCCEEEEEe------------CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCce
Q 035621          128 VSCLKISPDGSLLISGG------------DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI  195 (387)
Q Consensus       128 v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  195 (387)
                      +.+++|+|+++++++++            .++.|.+||+            ........+.. ...+..++|+|++  ++
T Consensus        84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~------------~~~~~~~~~~~-~~~~~~~~~s~dg--~~  148 (337)
T 1pby_B           84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA------------ETLSRRKAFEA-PRQITMLAWARDG--SK  148 (337)
T ss_dssp             TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEET------------TTTEEEEEEEC-CSSCCCEEECTTS--SC
T ss_pred             ccceEECCCCCEEEEEecccccccccccccCceEEEEEC------------CCCcEEEEEeC-CCCcceeEECCCC--CE
Confidence            77899999999988886            5799999999            34444444443 4567788898885  66


Q ss_pred             EEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCC------------------------cEEEEec
Q 035621          196 IISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDG------------------------LIYKGLL  251 (387)
Q Consensus       196 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------------~i~i~d~  251 (387)
                      ++++  ++.|.+||+.+++....+........+.|+|+++.+++.+..+                        .|.+||+
T Consensus       149 l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  226 (337)
T 1pby_B          149 LYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL  226 (337)
T ss_dssp             EEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred             EEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence            7776  6889999999999888776443222348899998776655433                        3578888


Q ss_pred             cccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          252 KYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      .+....        ......+...+.+++|+|++++++++  ++.|++||+.+++.+..+...  ..+.+++|++.
T Consensus       227 ~~~~~~--------~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~d  290 (337)
T 1pby_B          227 ETGEMA--------MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP--HSYYSVNVSTD  290 (337)
T ss_dssp             TTCCEE--------EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECTT
T ss_pred             CCCCce--------EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC--CceeeEEECCC
Confidence            764321        11123456678899999999999988  789999999999998887643  35777777653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=4.8e-22  Score=176.71  Aligned_cols=259  Identities=13%  Similarity=0.071  Sum_probs=175.0

Q ss_pred             CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC----------------cccccC
Q 035621           18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST----------------PLHNIP   81 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~----------------~~~~~~   81 (387)
                      +.+++|+.. ..      .+...++.++++++..+.+.    ++.++ +++|+.....                ....+.
T Consensus        23 ~~vri~~~~-~~------~~~~~~n~lavs~~~~~l~~----~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (434)
T 2oit_A           23 KKVRIFDSP-EE------LPKERSSLLAVSNKYGLVFA----GGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVP   90 (434)
T ss_dssp             CEEECSCCC-SS------CCCSCCBCEEEETTTTEEEE----EETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEEC
T ss_pred             eeEEecCCc-cc------cCCCCccEEEEecCCCEEEE----ECCCE-EEEEEchHhhhhcccccCcccccccCcccccc
Confidence            457777642 11      12345788999985544432    56666 8888763210                111233


Q ss_pred             CCCCeeeEEeccCCCEEE----EecCCCcEEEEeCCCC--------ce---eEEccCCCCCeEEEEEcCC-CCEEEEEeC
Q 035621           82 VPEPVAPLATTADGSYLF----TGGLSGNVYAISVPKG--------DI---LRSFSAHDKPVSCLKISPD-GSLLISGGD  145 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~----~~~~dg~i~i~d~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~  145 (387)
                      +...|.+++|+|++++|+    +|+.|+.|++||++++        +.   +..+.+|...|.+++|+|+ +++|++++.
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            556799999999999999    7889999999998654        21   4556679999999999997 789999999


Q ss_pred             CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec----
Q 035621          146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF----  221 (387)
Q Consensus       146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----  221 (387)
                      ||+|++||++            ..........|...|.+++|+|++  ++|++|+.||+|++||++ ++....+..    
T Consensus       171 Dg~v~iwD~~------------~~~~~~~~~~~~~~v~~v~wspdg--~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~  235 (434)
T 2oit_A          171 DGSIAVLQVT------------ETVKVCATLPSTVAVTSVCWSPKG--KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY  235 (434)
T ss_dssp             TSCEEEEEES------------SSEEEEEEECGGGCEEEEEECTTS--SCEEEEETTSCEEEECTT-CCEEEEECCCTTC
T ss_pred             CCeEEEEEcC------------CCcceeeccCCCCceeEEEEcCCC--CEEEEEcCCCcEEEEccC-CcccccccCCccc
Confidence            9999999993            344455566789999999999984  899999999999999998 666655542    


Q ss_pred             ----CCceeEEEeCCCCCeEEEEc-cCC------cEEEEecccccccccc---ccceeEeecccccccEEEEEEecCCCE
Q 035621          222 ----PCAIMGLALDPTETDFFAAG-SDG------LIYKGLLKYQSRQQMH---KGQELVTLANRHDGVVVSVMMMNEGKN  287 (387)
Q Consensus       222 ----~~~v~~~~~~~~~~~l~~~~-~dg------~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~  287 (387)
                          ...+.+++|++++.++++.+ .+|      .+++|++.........   ....+.........+-..+.+-++.++
T Consensus       236 ~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l  315 (434)
T 2oit_A          236 ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDL  315 (434)
T ss_dssp             CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTE
T ss_pred             CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCE
Confidence                12789999999887776543 343      3899999864221100   000000000122223233444467676


Q ss_pred             EEEEe-CCCcEEEEECC
Q 035621          288 LVSAA-EDGSVYIWEIE  303 (387)
Q Consensus       288 l~s~~-~dg~i~iwd~~  303 (387)
                      +++++ ..+.|.+....
T Consensus       316 ~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          316 VLAASAASTEVSILARQ  332 (434)
T ss_dssp             EEEEETTCSBCEEEEEC
T ss_pred             EEEecCCCCceeEEEec
Confidence            65544 45557776643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=2.2e-20  Score=162.79  Aligned_cols=257  Identities=12%  Similarity=0.083  Sum_probs=169.4

Q ss_pred             ccccCCCcEEEeeCCC----CcEEEEeCCC--Cce--eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC
Q 035621            2 LHHLPCNEVILTSSPE----GPITAYNPSS--GAI--LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS   73 (387)
Q Consensus         2 l~~s~~~~~l~~~~~d----g~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~   73 (387)
                      ++|+|||++|++++.+    +.|.+|++..  ++.  +.....+...+..+++ ....+..    +...++.+.+|++..
T Consensus        55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~----~~~~~~~v~~~~~~~  129 (361)
T 3scy_A           55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVT----ANYSGGSITVFPIGQ  129 (361)
T ss_dssp             EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEE----EETTTTEEEEEEBCT
T ss_pred             EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEE----EECCCCEEEEEEeCC
Confidence            6899999999988875    7999998764  433  3344445556677777 3222222    245789999999975


Q ss_pred             CCcccccC----C-----------CCCeeeEEeccCCCEEEEec-CCCcEEEEeCCCCc-------ee------EEccCC
Q 035621           74 STPLHNIP----V-----------PEPVAPLATTADGSYLFTGG-LSGNVYAISVPKGD-------IL------RSFSAH  124 (387)
Q Consensus        74 ~~~~~~~~----~-----------~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-------~~------~~~~~~  124 (387)
                      ...+..+.    +           ...+.+++|+|+|+++++++ .++.|.+|++....       +.      .....+
T Consensus       130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~  209 (361)
T 3scy_A          130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP  209 (361)
T ss_dssp             TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred             CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence            54332221    1           12357899999999776654 57899999886543       11      112234


Q ss_pred             CCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEee---eccCCCeEEEEEeeCCCCceEEEEe
Q 035621          125 DKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKF---VAHNDSVTAITCCIGSFNSIIISCS  200 (387)
Q Consensus       125 ~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~s~~  200 (387)
                      ...+..++|+|+++++++++ .++.|.+||+...          ....+..+   ..+......++|+|++  ++|+++.
T Consensus       210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g----------~~~~~~~~~~~~~~~~~~~~i~~spdg--~~l~v~~  277 (361)
T 3scy_A          210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG----------MLDEIQTVAADTVNAQGSGDIHLSPDG--KYLYASN  277 (361)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT----------EEEEEEEEESCSSCCCCEEEEEECTTS--SEEEEEE
T ss_pred             CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC----------ceEEeEEEecCCCCCCCcccEEECCCC--CEEEEEC
Confidence            55688999999999887777 6899999998311          11112222   2233456789999885  7775555


Q ss_pred             C--CCcEEEEeCC--CCc--EEEEEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeec-ccc
Q 035621          201 M--DCTCKFWRLL--NGT--HLSTVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLA-NRH  272 (387)
Q Consensus       201 ~--d~~i~iwd~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~  272 (387)
                      .  ++.|.+|++.  +++  .+..+.....+..++|+|+|++|++++ .++.|.+|++.....       .+.... ..+
T Consensus       278 ~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g-------~~~~~~~~~~  350 (361)
T 3scy_A          278 RLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATG-------LLTDIKKDIK  350 (361)
T ss_dssp             CSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTC-------CEEECSCCEE
T ss_pred             CCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCC-------cEeecceeee
Confidence            4  5899999996  444  344444555788999999999988887 578999976654221       111111 124


Q ss_pred             cccEEEEEEe
Q 035621          273 DGVVVSVMMM  282 (387)
Q Consensus       273 ~~~v~~~~~s  282 (387)
                      ...+.|++|.
T Consensus       351 ~~~p~~v~~~  360 (361)
T 3scy_A          351 VDKPVCLKFV  360 (361)
T ss_dssp             CSSEEEEEEE
T ss_pred             CCCCeEEEEc
Confidence            4568888886

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=1.4e-20  Score=164.11  Aligned_cols=274  Identities=10%  Similarity=0.036  Sum_probs=180.6

Q ss_pred             EEEeeCCC--CcEEEEeC--CCCceeE--ecc-CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc-CCCcccccC
Q 035621           10 VILTSSPE--GPITAYNP--SSGAILA--HFS-GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW-SSTPLHNIP   81 (387)
Q Consensus        10 ~l~~~~~d--g~i~iwd~--~~~~~~~--~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~-~~~~~~~~~   81 (387)
                      ++++|+..  +.|.+|++  .+++...  ... .....+..++|+|++..+..    ++.+ .|.+|++. +++......
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~----~~~~-~v~~~~~~~~g~~~~~~~   78 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYG----AAMK-KWSSFAVKSPTEIVHEAS   78 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEE----EEBT-EEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEE----Eccc-eEEEEEECCCCCEEEeeE
Confidence            45555543  46888764  5665432  221 23346889999997654322    4444 89999997 776543332


Q ss_pred             C--CCCeeeEEeccCCCE--EEEec-------------CCCcEEEEeCC-CCceeEEcc----CCCCCeEEEEEcCCCCE
Q 035621           82 V--PEPVAPLATTADGSY--LFTGG-------------LSGNVYAISVP-KGDILRSFS----AHDKPVSCLKISPDGSL  139 (387)
Q Consensus        82 ~--~~~v~~~~~~~~~~~--l~~~~-------------~dg~i~i~d~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~  139 (387)
                      +  .+.+.+++|+|+|++  ++++.             .+|.+.+|++. +++....+.    .+...+.+++|+|+|++
T Consensus        79 ~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~  158 (365)
T 1jof_A           79 HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY  158 (365)
T ss_dssp             EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred             eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE
Confidence            2  234677999999994  55553             68899999997 466544433    24567999999999998


Q ss_pred             EEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeee--ccCCCeEEEEEeeCCCCceEEEEeC-CCcEEEEeCC--CC
Q 035621          140 LISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSVTAITCCIGSFNSIIISCSM-DCTCKFWRLL--NG  213 (387)
Q Consensus       140 l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~--~~  213 (387)
                      ++++.. ++.|++||+...         .....+..+.  .|...+..++|+|++  +++++++. ++.|.+|++.  ++
T Consensus       159 l~~~~~~~~~v~~~~~~~~---------g~~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g  227 (365)
T 1jof_A          159 LYSADLTANKLWTHRKLAS---------GEVELVGSVDAPDPGDHPRWVAMHPTG--NYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             EEEEETTTTEEEEEEECTT---------SCEEEEEEEECSSTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEEEcCCCCEEEEEEECCC---------CCEEEeeeEecCCCCCCCCEeEECCCC--CEEEEEECCCCeEEEEEEeCCCC
Confidence            887764 679999998310         0111122232  245678899999885  77776664 7899999765  56


Q ss_pred             cEE---EEEe-cC------C-------ceeEEE-eCCCCCeEEEEccCC------cEEEEeccc-cccccccccceeEee
Q 035621          214 THL---STVT-FP------C-------AIMGLA-LDPTETDFFAAGSDG------LIYKGLLKY-QSRQQMHKGQELVTL  268 (387)
Q Consensus       214 ~~~---~~~~-~~------~-------~v~~~~-~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~~~~~~~~~~~  268 (387)
                      +..   ..+. .+      .       .+..++ |+|||++|++++.+.      .|.+|++.. +..      ......
T Consensus       228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~------~~~~~~  301 (365)
T 1jof_A          228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI------EKQLFL  301 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE------EEEEEE
T ss_pred             cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE------EEeeee
Confidence            543   2232 11      1       478999 999999998876533      799999863 111      011111


Q ss_pred             cccccccEEEEEEec---CCCEEEEEeCC-CcEEEEECCCc
Q 035621          269 ANRHDGVVVSVMMMN---EGKNLVSAAED-GSVYIWEIEKR  305 (387)
Q Consensus       269 ~~~~~~~v~~~~~s~---~~~~l~s~~~d-g~i~iwd~~~~  305 (387)
                      ...+...+..++|+|   +|++|++++.+ +.|.+|+++..
T Consensus       302 ~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          302 SPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            122344566789999   89999988764 89999998776

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=7.5e-22  Score=187.78  Aligned_cols=287  Identities=10%  Similarity=0.007  Sum_probs=191.0

Q ss_pred             ccccCCCcEEEeeCC---------CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc
Q 035621            2 LHHLPCNEVILTSSP---------EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW   72 (387)
Q Consensus         2 l~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~   72 (387)
                      ++|||||++|++++.         ++.|++||+.+++.+.... ....+..++|+|++...+.    + .++.|++|++.
T Consensus        65 ~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~----~-~~~~i~~~~~~  138 (719)
T 1z68_A           65 YGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAY----V-YQNNIYLKQRP  138 (719)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEE----E-ETTEEEEESST
T ss_pred             EEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEE----E-ECCeEEEEeCC
Confidence            479999999998876         7899999999887631111 1246889999997765543    3 47899999998


Q ss_pred             CCCcccccCCC--C-----------------CeeeEEeccCCCEEEEecCCC----------------------------
Q 035621           73 SSTPLHNIPVP--E-----------------PVAPLATTADGSYLFTGGLSG----------------------------  105 (387)
Q Consensus        73 ~~~~~~~~~~~--~-----------------~v~~~~~~~~~~~l~~~~~dg----------------------------  105 (387)
                      +++........  .                 ...+++|+|||++|++++.|.                            
T Consensus       139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g  218 (719)
T 1z68_A          139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG  218 (719)
T ss_dssp             TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred             CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence            88765433211  1                 125899999999999987542                            


Q ss_pred             ------cEEEEeCCCCcee--------EEccCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEe----CCcccccCCC
Q 035621          106 ------NVYAISVPKGDIL--------RSFSAHDKPVSCLKISPDGSLLISGGDD----GVIATVP----IFQLVDEHTD  163 (387)
Q Consensus       106 ------~i~i~d~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~  163 (387)
                            .|++||+.+++..        ..+..|...+..++|+||++++++....    ..|.+||    +.        
T Consensus       219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~--------  290 (719)
T 1z68_A          219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ--------  290 (719)
T ss_dssp             SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS--------
T ss_pred             CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC--------
Confidence                  7889999887653        1234678889999999998777764432    2488888    52        


Q ss_pred             CCCCCccceEee----eccCCCeE-----EEEEeeCCCCceEE--EEeCCC--cEEEEeCCCCcEEEEEe-cCCceeEEE
Q 035621          164 DKNPDDLMLQKF----VAHNDSVT-----AITCCIGSFNSIII--SCSMDC--TCKFWRLLNGTHLSTVT-FPCAIMGLA  229 (387)
Q Consensus       164 ~~~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~~~l~--s~~~d~--~i~iwd~~~~~~~~~~~-~~~~v~~~~  229 (387)
                          .+.....+    ..|...+.     .+.|+|++  +.++  +...+|  .|.+||+.+++ ...+. ....+..+.
T Consensus       291 ----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~  363 (719)
T 1z68_A          291 ----TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA--ISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIF  363 (719)
T ss_dssp             ----SEECCGGGEEEEECSSSCSSSSSCCCCEECTTS--SCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEE
T ss_pred             ----CCceEEEEecccccCCceEccccCCccEECCCC--CeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEE
Confidence                22222222    35666665     78899886  5333  344555  57778887776 33444 345577777


Q ss_pred             eCCCCCeEEEEccC-----CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE-EeCC--CcEEEEE
Q 035621          230 LDPTETDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS-AAED--GSVYIWE  301 (387)
Q Consensus       230 ~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~d--g~i~iwd  301 (387)
                      +. +++.++..+.+     +...+|.+........  ...+...+.+|...+..+.|+|++++++. ++.+  ..+.+||
T Consensus       364 ~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d  440 (719)
T 1z68_A          364 RV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPS--KKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD  440 (719)
T ss_dssp             EE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCC--EEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred             EE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCC--ceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence            77 77777766654     7888998765211000  00110001235667889999999987774 3333  4689999


Q ss_pred             CCCccEEEEee
Q 035621          302 IEKRQVVMVLK  312 (387)
Q Consensus       302 ~~~~~~~~~~~  312 (387)
                      +.+++.+..+.
T Consensus       441 ~~~g~~~~~~~  451 (719)
T 1z68_A          441 GRTDQEIKILE  451 (719)
T ss_dssp             SSSCCEEEEEE
T ss_pred             CCCCCEEEEee
Confidence            99888766554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.89  E-value=2.4e-20  Score=161.92  Aligned_cols=292  Identities=13%  Similarity=0.145  Sum_probs=200.7

Q ss_pred             CCCcEEEeeC------CCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeee--cc----ccCCCCCeEEEEEccC
Q 035621            6 PCNEVILTSS------PEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAAS--HI----SPTTGSGSVHLYNLWS   73 (387)
Q Consensus         6 ~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~----~~~~~d~~v~vw~~~~   73 (387)
                      ++++++++..      .|+.|++||..+++.+.++..+..+  .++|+|++..+..  .+    ..+..++.|.+||..+
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t   90 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK   90 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence            4666666543      3679999999999999888877665  8999997654332  11    1123467899999998


Q ss_pred             CCcccccCC-------CCCeeeEEeccCCCEEEEecC--CCcEEEEeCCCCceeEE-ccCCCCCeEEEEEcCCC-CEEEE
Q 035621           74 STPLHNIPV-------PEPVAPLATTADGSYLFTGGL--SGNVYAISVPKGDILRS-FSAHDKPVSCLKISPDG-SLLIS  142 (387)
Q Consensus        74 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~  142 (387)
                      ++.+..+..       ......++++|+|++|+++..  ++.|.+||+.+++.+.. +...  ....+.+.|++ ..+++
T Consensus        91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~  168 (361)
T 2oiz_A           91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMT  168 (361)
T ss_dssp             CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEE
T ss_pred             CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEE
Confidence            888776652       245788999999999998864  57899999999998887 6532  22335677765 67888


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCCccce------EeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-
Q 035621          143 GGDDGVIATVPIFQLVDEHTDDKNPDDLML------QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-  215 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-  215 (387)
                      .+.||.+.+|++..           .....      ..+..+..++ .+.+.+++  ..++..+.++.+.++|+..... 
T Consensus       169 ~~~dg~~~~v~~~~-----------~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g--~~~~~~~~~~~v~v~d~~~~~~~  234 (361)
T 2oiz_A          169 ICGDGGLLTINLGE-----------DGKVASQSRSKQMFSVKDDPI-FIAPALDK--DKAHFVSYYGNVYSADFSGDEVK  234 (361)
T ss_dssp             EETTSSEEEEEECT-----------TSSEEEEEECCCCSCTTTSCB-CSCCEECS--SEEEEEBTTSEEEEEECSSSSCE
T ss_pred             ECCCCcEEEEEECC-----------CCcEeeeccccceEcCCCCce-EEEecccC--CEEEEEeCCCeEEEEEecCCCce
Confidence            88999999998732           11111      1111222222 22224543  4556667889999999875542 


Q ss_pred             -EEEEec-----------CCceeEEEeCCCCCeEEEEcc-----------CCcEEEEeccccccccccccceeEeecccc
Q 035621          216 -LSTVTF-----------PCAIMGLALDPTETDFFAAGS-----------DGLIYKGLLKYQSRQQMHKGQELVTLANRH  272 (387)
Q Consensus       216 -~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  272 (387)
                       ...+..           +.....++++|+++.++++..           .+.|.+||..+.        +.+..+ ..+
T Consensus       235 ~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~--------~~v~~i-~~~  305 (361)
T 2oiz_A          235 VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK--------QRVARI-PGR  305 (361)
T ss_dssp             EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--------EEEEEE-ECT
T ss_pred             ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC--------cEEEEE-ecC
Confidence             222221           112223789999998888754           347999998873        333333 234


Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCc--cEEEEeecccCCCceeEEEEecC
Q 035621          273 DGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR--QVVMVLKNELAGSISEMVIATGI  328 (387)
Q Consensus       273 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~  328 (387)
                      .  +.+++|+|||++|++++. +.|.+||..++  +++..+... ...+..+++++..
T Consensus       306 ~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~-G~~P~~~~~~p~G  359 (361)
T 2oiz_A          306 D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA-AEASLQVQFHPVG  359 (361)
T ss_dssp             T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS-CSSEEEEEECCCS
T ss_pred             C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC-CCCcEEEEecCCC
Confidence            4  899999999999998876 99999999999  999887543 3366777777643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=2.1e-20  Score=162.03  Aligned_cols=238  Identities=15%  Similarity=0.096  Sum_probs=162.6

Q ss_pred             ccccCCCcEEEeeCC---CCcEEEEeCCCCc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CC
Q 035621            2 LHHLPCNEVILTSSP---EGPITAYNPSSGA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-ST   75 (387)
Q Consensus         2 l~~s~~~~~l~~~~~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~   75 (387)
                      ++|+|||+ |++++.   ++.|++|++.+++  .+..+..+...+..++|+|++..+..   +...++.+.+|++.. +.
T Consensus        45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~---~~~~~~~v~v~~~~~~g~  120 (347)
T 3hfq_A           45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYS---ANYHKGTAEVMKIAADGA  120 (347)
T ss_dssp             EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEE---EETTTTEEEEEEECTTSC
T ss_pred             EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEE---EeCCCCEEEEEEeCCCCC
Confidence            67999999 554443   6899999997765  44454557778899999997653322   134789999999963 22


Q ss_pred             --cccccCCC----------CCeeeEEeccCCCEEEEecCCCcEEEEeCC-CCceeE--EccC-CCCCeEEEEEcCCCCE
Q 035621           76 --PLHNIPVP----------EPVAPLATTADGSYLFTGGLSGNVYAISVP-KGDILR--SFSA-HDKPVSCLKISPDGSL  139 (387)
Q Consensus        76 --~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~--~~~~-~~~~v~~~~~~~~~~~  139 (387)
                        .+..+...          ..+.+++|+|+|+++++...++.|.+|++. +++...  .+.. ....+..++|+|+|++
T Consensus       121 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~  200 (347)
T 3hfq_A          121 LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY  200 (347)
T ss_dssp             EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred             eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE
Confidence              22222221          247889999999966666678899999998 554332  2222 2336789999999996


Q ss_pred             EEE-EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC------CCeEEEEEeeCCCCceE-EEEeCCCcEEEEeCC
Q 035621          140 LIS-GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN------DSVTAITCCIGSFNSII-ISCSMDCTCKFWRLL  211 (387)
Q Consensus       140 l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~  211 (387)
                      +++ ...++.|.+|++....        ........+....      ..+..++|+|++  ++| ++...++.|.+|++.
T Consensus       201 l~v~~~~~~~v~v~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG--~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          201 AFLAGELSSQIASLKYDTQT--------GAFTQLGIVKTIPADYTAHNGAAAIRLSHDG--HFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEEEETTTTEEEEEEEETTT--------TEEEEEEEEESSCTTCCSCCEEEEEEECTTS--CEEEEEEETTTEEEEEEEC
T ss_pred             EEEEeCCCCEEEEEEecCCC--------CceEEeeeeeecCCCCCCCCcceeEEECCCC--CEEEEEeCCCCEEEEEEEC
Confidence            665 5578899999983200        0111122222222      347889999885  655 666678999999997


Q ss_pred             CC---cEEEEEec-CCceeEEEeCCCCCeEEEEcc-CCcEEEEeccc
Q 035621          212 NG---THLSTVTF-PCAIMGLALDPTETDFFAAGS-DGLIYKGLLKY  253 (387)
Q Consensus       212 ~~---~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~  253 (387)
                      ..   +.+..+.. ...+..++|+|+|++|++++. ++.|.+|++..
T Consensus       271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence            32   44444443 456889999999999888876 58999996653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.88  E-value=3.5e-21  Score=169.52  Aligned_cols=271  Identities=12%  Similarity=0.048  Sum_probs=182.8

Q ss_pred             ccccCCCcEEEeeCC-CCc--EEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            2 LHHLPCNEVILTSSP-EGP--ITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         2 l~~s~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      .+|||||++|+.++. +|.  |.+||+.+++......++...+..+.|+|++..++.    ++.++.+++||+.+++...
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~----~~~~~~l~~~d~~~g~~~~  116 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFY----VKDGRNLMRVDLATLEENV  116 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEE----EETTTEEEEEETTTCCEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEE----EeCCCeEEEEECCCCccee
Confidence            469999999988876 663  888999999888777777666668899997654433    5567899999999988766


Q ss_pred             ccCCCCC-eee--EEeccCCCEEEEe----------------------cCCCcEEEEeCCCCceeEEccCCCCCeEEEEE
Q 035621           79 NIPVPEP-VAP--LATTADGSYLFTG----------------------GLSGNVYAISVPKGDILRSFSAHDKPVSCLKI  133 (387)
Q Consensus        79 ~~~~~~~-v~~--~~~~~~~~~l~~~----------------------~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  133 (387)
                      ....+.. +..  ..++|++++++..                      ..+..|.+||+.+++... +..+...+..++|
T Consensus       117 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~  195 (388)
T 3pe7_A          117 VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIY  195 (388)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEE
T ss_pred             eeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEE
Confidence            5554433 322  3458999988742                      234689999999887544 4346677899999


Q ss_pred             cC-CCCEEEEEeCC------CcEEEEeCCcccccCCCCCCCCccceEeeeccC--CCeEEEEEeeCCCCceEEEEeC-CC
Q 035621          134 SP-DGSLLISGGDD------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN--DSVTAITCCIGSFNSIIISCSM-DC  203 (387)
Q Consensus       134 ~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~s~~~-d~  203 (387)
                      +| +++.|+....+      ..|.++|+.             ......+..+.  ..+..+.|+|++  +.|+..+. ++
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-------------~~~~~~l~~~~~~~~~~~~~~spdg--~~l~~~~~~~~  260 (388)
T 3pe7_A          196 RPYDDSTVAFCHEGPHDLVDARMWLINED-------------GTNMRKVKTHAEGESCTHEFWVPDG--SALVYVSYLKG  260 (388)
T ss_dssp             ETTEEEEEEEEECSCTTTSSCSEEEEETT-------------SCCCEESCCCCTTEEEEEEEECTTS--SCEEEEEEETT
T ss_pred             CCCCCCEEEEEEecCCCCCcceEEEEeCC-------------CCceEEeeeCCCCcccccceECCCC--CEEEEEecCCC
Confidence            99 99988877653      367777762             12223333333  357788899886  65544332 22


Q ss_pred             ----cEEEEeCCCCcEEEEEecCCc------eeEEEeCCCCCeEEEE---------ccCCcEEEEeccccccccccccce
Q 035621          204 ----TCKFWRLLNGTHLSTVTFPCA------IMGLALDPTETDFFAA---------GSDGLIYKGLLKYQSRQQMHKGQE  264 (387)
Q Consensus       204 ----~i~iwd~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~---------~~dg~i~i~d~~~~~~~~~~~~~~  264 (387)
                          .|++||+.+++.......+..      ....+|+|||+.|+..         ..+..|++||+..+...       
T Consensus       261 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------  333 (388)
T 3pe7_A          261 SPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-------  333 (388)
T ss_dssp             CCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-------
T ss_pred             CCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-------
Confidence                399999999875433232220      1223799999988864         44668999999874321       


Q ss_pred             eEeecccccc-----------cEEEEEEecCCCEEEEEe-CCCcEEEEEC
Q 035621          265 LVTLANRHDG-----------VVVSVMMMNEGKNLVSAA-EDGSVYIWEI  302 (387)
Q Consensus       265 ~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~-~dg~i~iwd~  302 (387)
                        .+ ..+..           .+..++|+|||+.|+..+ .+|...||.+
T Consensus       334 --~l-~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          334 --RV-ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             --EE-EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             --Ee-ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence              11 12333           477889999999888655 4666666654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=7.3e-21  Score=176.48  Aligned_cols=248  Identities=12%  Similarity=0.029  Sum_probs=174.4

Q ss_pred             CCCceeEEEcCccceeeeccccCCC-CCeEEEEEccCCCcccccCCC-CCeeeEEeccCCCEEEEecC---CCcEEEEeC
Q 035621           38 RSPRRGLTFAGKPFIAASHISPTTG-SGSVHLYNLWSSTPLHNIPVP-EPVAPLATTADGSYLFTGGL---SGNVYAISV  112 (387)
Q Consensus        38 ~~~v~~~~~~~~~~~~~~~~~~~~~-d~~v~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~  112 (387)
                      ..+|.+++|+|++...+.    ++. ||+++||++.+++..+...+. ..+..++|+|| +.+++++.   +....+|.+
T Consensus        21 ~~~~~~~~~~~DG~~la~----~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLV----VGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HSCEEEEEEEETTTEEEE----EEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred             ccchheeecCCCCCeEEE----EEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence            457999999997655443    444 999999999777666555565 57999999999 77777664   444556544


Q ss_pred             CC---CceeEEccCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEe
Q 035621          113 PK---GDILRSFSAHDKPVSCLKISPDGSL-LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC  188 (387)
Q Consensus       113 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  188 (387)
                      ..   +... .+... ..+...+|+|+++. +++.+.++.+.+||+            ..+.. ..+..+..  .+++|+
T Consensus        96 ~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~------------~~g~~-~~l~~~~~--~~~~~s  158 (582)
T 3o4h_A           96 NTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYAL------------DGGGL-RELARLPG--FGFVSD  158 (582)
T ss_dssp             ETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEE------------ETTEE-EEEEEESS--CEEEEE
T ss_pred             eccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEc------------cCCcE-EEeecCCC--ceEEEC
Confidence            32   3322 33322 23456688888763 334444455569998            23332 23333333  788999


Q ss_pred             eCCCCceEEEEeCC----CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCC--cEEEEecccccccccccc
Q 035621          189 IGSFNSIIISCSMD----CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDG--LIYKGLLKYQSRQQMHKG  262 (387)
Q Consensus       189 ~~~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~  262 (387)
                      |++  +++++++.+    +.|++||+.+++......+...+..++|+|||+.|+++..++  .|++||+.++..      
T Consensus       159 pDG--~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~------  230 (582)
T 3o4h_A          159 IRG--DLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV------  230 (582)
T ss_dssp             EET--TEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE------
T ss_pred             CCC--CEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE------
Confidence            985  889988777    789999999888764444677889999999999999877888  899999886322      


Q ss_pred             ceeEeecccccccEEEEE--------EecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621          263 QELVTLANRHDGVVVSVM--------MMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       263 ~~~~~~~~~~~~~v~~~~--------~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  325 (387)
                        .  ....|...+..++        |+|||.++++++.||.+++|++  ++.+..    ..+.+..+.|+
T Consensus       231 --~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~----~~~~v~~~~~s  291 (582)
T 3o4h_A          231 --E--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA----PQGNHGRVVLW  291 (582)
T ss_dssp             --E--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC----CSSEEEEEEEE
T ss_pred             --E--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc----CCCceEEEEec
Confidence              1  3335555555566        9999999999999999999999  666542    23467777766

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.87  E-value=1.1e-19  Score=172.93  Aligned_cols=306  Identities=13%  Similarity=0.120  Sum_probs=187.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCc-----eeEEEcCccceeeeccccCCCC---------CeEE
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPR-----RGLTFAGKPFIAASHISPTTGS---------GSVH   67 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~~~~d---------~~v~   67 (387)
                      ++|+|||++++++  ||.|++||+.+++....+.+|....     ..+.|+|++...+.    ++.+         +.+.
T Consensus        22 ~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~----~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           22 LRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILL----EYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             EEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEE----EEEEEECSSSCEEEEEE
T ss_pred             cEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEE----EECCeeeEEEccceEEE
Confidence            5799999999987  8999999999999888787776442     33788997765433    3333         6778


Q ss_pred             EEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc-cCCCCCe-----------------E
Q 035621           68 LYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF-SAHDKPV-----------------S  129 (387)
Q Consensus        68 vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v-----------------~  129 (387)
                      +||+.+++......+...+...+|||||+.||.+ .++.|++|++.+++..+.. .++...+                 .
T Consensus        96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~  174 (740)
T 4a5s_A           96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (740)
T ss_dssp             EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             EEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence            9999999876655567889999999999999988 4689999999888754422 2222222                 3


Q ss_pred             EEEEcCCCCEEEEEeCCCc-EEEEeCCccccc-------------CCCCCC----------CC---cc--ceEeee----
Q 035621          130 CLKISPDGSLLISGGDDGV-IATVPIFQLVDE-------------HTDDKN----------PD---DL--MLQKFV----  176 (387)
Q Consensus       130 ~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~-------------~~~~~~----------~~---~~--~~~~~~----  176 (387)
                      .+.|+|||++|+.++.|.. +.+|++......             .....+          ..   +.  ....+.    
T Consensus       175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~  254 (740)
T 4a5s_A          175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS  254 (740)
T ss_dssp             CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred             ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence            5899999999998864433 444433110000             000000          11   11  122232    


Q ss_pred             --ccCCCeEEEEEeeCCCCceEEEEeC----CCcEEEEeCCCCc----EE--EE---EecCCce-----eEEEeCCCCCe
Q 035621          177 --AHNDSVTAITCCIGSFNSIIISCSM----DCTCKFWRLLNGT----HL--ST---VTFPCAI-----MGLALDPTETD  236 (387)
Q Consensus       177 --~~~~~i~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~----~~--~~---~~~~~~v-----~~~~~~~~~~~  236 (387)
                        +|...+..++|+|++  +.++....    +..|.+||+.+++    +.  ..   -.+...+     ....|+|||+.
T Consensus       255 ~~~~~~~~~~~~wspdg--~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~  332 (740)
T 4a5s_A          255 MLIGDHYLCDVTWATQE--RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS  332 (740)
T ss_dssp             HHTSCEEEEEEEEEETT--EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred             CCCCCeEEEEEEEeCCC--eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence              267778999999996  65554432    3479999999887    21  11   1233333     37889999998


Q ss_pred             EE-EEcc-CC--cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEE-EEeC----CC--cEEEEECCCc
Q 035621          237 FF-AAGS-DG--LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLV-SAAE----DG--SVYIWEIEKR  305 (387)
Q Consensus       237 l~-~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~----dg--~i~iwd~~~~  305 (387)
                      ++ ..+. +|  .|++|+...+.         ...+. ...-.+..+.. +|++.|+ ++..    .+  .|+..++..+
T Consensus       333 l~~~~s~~~G~~~l~~~~~~~~~---------~~~lT-~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~  401 (740)
T 4a5s_A          333 FYKIISNEEGYRHICYFQIDKKD---------CTFIT-KGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDY  401 (740)
T ss_dssp             EEEEEECTTSCEEEEEEETTCSS---------CEESC-CSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEE
T ss_pred             EEEEEEcCCCceEEEEEECCCCc---------eEecc-cCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCC
Confidence            77 5543 44  57777776532         12222 22334555432 4466554 4433    23  4555566555


Q ss_pred             cEEEEeecc---cCCCceeEEEEec
Q 035621          306 QVVMVLKNE---LAGSISEMVIATG  327 (387)
Q Consensus       306 ~~~~~~~~~---~~~~v~~~~~~~~  327 (387)
                      +....+...   ..+......|++.
T Consensus       402 ~~~~~lt~~~~~~~~~~~~~~~S~d  426 (740)
T 4a5s_A          402 TKVTCLSCELNPERCQYYSVSFSKE  426 (740)
T ss_dssp             EEEEESSTTTSTTTBCBEEEEECTT
T ss_pred             CcceeeccccCCCCCceEEEEECCC
Confidence            443344322   1234455555543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=1.2e-19  Score=157.20  Aligned_cols=243  Identities=9%  Similarity=0.075  Sum_probs=169.3

Q ss_pred             EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCC--CeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeEE
Q 035621           44 LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPE--PVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILRS  120 (387)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~  120 (387)
                      ++++++..+    +++++.++.|.+||+.+++.+..+..+.  .+..++|+|++++++ ++..++.|.+||+.+++.+..
T Consensus         5 ~~~~~~~~~----~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~   80 (349)
T 1jmx_B            5 PALKAGHEY----MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   80 (349)
T ss_dssp             CCCCTTCEE----EEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccccCCCEE----EEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence            445554333    3346789999999999998887777665  788999999998665 455788999999999988777


Q ss_pred             ccCCC------CCeEEEEEcCCCCEEEEEeCC------------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621          121 FSAHD------KPVSCLKISPDGSLLISGGDD------------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV  182 (387)
Q Consensus       121 ~~~~~------~~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  182 (387)
                      +..+.      ..+..++|+|+++++++++.+            +.|.+||+....         ....+..+. +...+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---------~~~~~~~~~-~~~~~  150 (349)
T 1jmx_B           81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL---------EAKPVRTFP-MPRQV  150 (349)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG---------GBCCSEEEE-CCSSC
T ss_pred             EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc---------ccceeeecc-CCCcc
Confidence            65332      237889999999999998865            899999984311         011222332 33467


Q ss_pred             EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCC-------------------------ceeEEEeCCCCCeE
Q 035621          183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC-------------------------AIMGLALDPTETDF  237 (387)
Q Consensus       183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------~v~~~~~~~~~~~l  237 (387)
                      .+++|+|++  + ++.++  +.|.+||+.+++....+....                         ....+++++++...
T Consensus       151 ~~~~~s~dg--~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  225 (349)
T 1jmx_B          151 YLMRAADDG--S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD  225 (349)
T ss_dssp             CCEEECTTS--C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------
T ss_pred             cceeECCCC--c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC
Confidence            888999886  5 44444  349999999999888776432                         34456666554211


Q ss_pred             -----------EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEEeCCCcEEEEECCCc
Q 035621          238 -----------FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       238 -----------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~  305 (387)
                                 .....++.+.++++.                  .+...+..++|+| ++++++++  ++.|.+||+.++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~  285 (349)
T 1jmx_B          226 PATADLLYGYLSVDLKTGKTHTQEFA------------------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR  285 (349)
T ss_dssp             -CCCEEEEEEEEEETTTCCEEEEEEE------------------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT
T ss_pred             ccccccceeEEEEeccCCcEEecccc------------------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC
Confidence                       122223444444332                  2455788999999 99999988  889999999999


Q ss_pred             cEEEEeecccCCCceeEEEEec
Q 035621          306 QVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       306 ~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      +.+..+...  ..+.+++|++.
T Consensus       286 ~~~~~~~~~--~~~~~~~~s~d  305 (349)
T 1jmx_B          286 KLIKAANLD--HTYYCVAFDKK  305 (349)
T ss_dssp             EEEEEEECS--SCCCEEEECSS
T ss_pred             eEEEEEcCC--CCccceEECCC
Confidence            998888643  34677777654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=1.4e-18  Score=152.92  Aligned_cols=264  Identities=11%  Similarity=0.037  Sum_probs=178.0

Q ss_pred             EEEeCCCCceeEeccCCCCCcee-----EEEcCccceeeeccccCCCCC--eEEEEEccCCCcccccCCCC-CeeeEEec
Q 035621           21 TAYNPSSGAILAHFSGSRSPRRG-----LTFAGKPFIAASHISPTTGSG--SVHLYNLWSSTPLHNIPVPE-PVAPLATT   92 (387)
Q Consensus        21 ~iwd~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~~~~~~~d~--~v~vw~~~~~~~~~~~~~~~-~v~~~~~~   92 (387)
                      ..+|..++..+..+..|......     .+|+|++..++..   ...++  .|.+||+.+++......... .+....|+
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~---~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~s   89 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFG---GAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLS   89 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEE---ECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEEC
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEE---EcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEc
Confidence            34677888888888887765555     8899976544321   22255  58888998887766655443 44578999


Q ss_pred             cCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEE--EcCCCCEEEEE----------------------eCCCc
Q 035621           93 ADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLK--ISPDGSLLISG----------------------GDDGV  148 (387)
Q Consensus        93 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------------~~dg~  148 (387)
                      |||+.|+.++.++.|++||+.+++....+..+...+....  ++|++++++..                      ..+..
T Consensus        90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (388)
T 3pe7_A           90 PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR  169 (388)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence            9999999999889999999999987766666655554443  48999988742                      24467


Q ss_pred             EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee-CCCCceEEEEeCC------CcEEEEeCCCCcEEEEEec
Q 035621          149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI-GSFNSIIISCSMD------CTCKFWRLLNGTHLSTVTF  221 (387)
Q Consensus       149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~  221 (387)
                      |.+||+            ..+ ....+..+...+..+.|+| ++  +.|+..+.+      ..|.++|+..+........
T Consensus       170 l~~~d~------------~~g-~~~~l~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~  234 (388)
T 3pe7_A          170 LMRVDL------------KTG-ESTVILQENQWLGHPIYRPYDD--STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTH  234 (388)
T ss_dssp             EEEEET------------TTC-CEEEEEEESSCEEEEEEETTEE--EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCC
T ss_pred             EEEEEC------------CCC-ceEEeecCCccccccEECCCCC--CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeC
Confidence            889988            233 3445556777889999999 74  777766653      3788888776554332233


Q ss_pred             C--CceeEEEeCCCCCeEEEEcc-CC----cEEEEeccccccccccccceeEeeccccccc---EEEEEEecCCCEEEEE
Q 035621          222 P--CAIMGLALDPTETDFFAAGS-DG----LIYKGLLKYQSRQQMHKGQELVTLANRHDGV---VVSVMMMNEGKNLVSA  291 (387)
Q Consensus       222 ~--~~v~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~s~  291 (387)
                      .  ..+...+|+|||+.|+..+. ++    .|++||+.++.....      .. ...+...   ...++|+|||+.|+..
T Consensus       235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l------~~-~~~~~~~~~~~~~~~~spdg~~l~~~  307 (388)
T 3pe7_A          235 AEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQL------TS-MPACSHLMSNYDGSLMVGDGSDAPVD  307 (388)
T ss_dssp             CTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEE------EE-ECCEEEEEECTTSSEEEEEECCC---
T ss_pred             CCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEE------Ec-CCCceeeeecCCCCeEccCCCcceeE
Confidence            3  35778899999998866544 22    399999987542211      11 1111000   1123799999988753


Q ss_pred             ---------eCCCcEEEEECCCccEEE
Q 035621          292 ---------AEDGSVYIWEIEKRQVVM  309 (387)
Q Consensus       292 ---------~~dg~i~iwd~~~~~~~~  309 (387)
                               ..+..|++||+.+++...
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~  334 (388)
T 3pe7_A          308 VQDDSGYKIENDPFLYVFNMKNGTQHR  334 (388)
T ss_dssp             ---------CCCCEEEEEETTTTEEEE
T ss_pred             eeeccccccCCCCEEEEEeccCCceEE
Confidence                     456789999999887643

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.85  E-value=6.8e-20  Score=161.63  Aligned_cols=277  Identities=11%  Similarity=-0.003  Sum_probs=177.0

Q ss_pred             ccccCCCcEEEeeCCC---CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            2 LHHLPCNEVILTSSPE---GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         2 l~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      ++|||||++|+.....   ..|++||+.+++......++......+.|+|++..++.    ++.++.|.+||+.+++...
T Consensus        41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~----~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFY----VKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEE----EETTTEEEEEETTTCCEEE
T ss_pred             CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEE----EEcCCcEEEEECCCCCcEE
Confidence            4699999998776432   36888999888765544433333444889997654432    5567789999998887655


Q ss_pred             ccCCCCC-eee-------------------EEeccCCCEEEEe-----cCCCcEEEEeCCCCceeEEccCCCCCeEEEEE
Q 035621           79 NIPVPEP-VAP-------------------LATTADGSYLFTG-----GLSGNVYAISVPKGDILRSFSAHDKPVSCLKI  133 (387)
Q Consensus        79 ~~~~~~~-v~~-------------------~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~  133 (387)
                      ....+.. ...                   ..|+|+++.++..     ..+..|.+||+.+++..... .+...+..+.|
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~  195 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIY  195 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceE
Confidence            4442221 111                   3567777776654     35568999999888765544 45677899999


Q ss_pred             cC-CCCEEEEEeCC------CcEEEEeCCcccccCCCCCCCCccceEeeecc--CCCeEEEEEeeCCCCceEEEEeCC--
Q 035621          134 SP-DGSLLISGGDD------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH--NDSVTAITCCIGSFNSIIISCSMD--  202 (387)
Q Consensus       134 ~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~s~~~d--  202 (387)
                      +| +++.|+..+.+      ..|.+||+.            .. ....+..+  ...+..++|+|++  +.|+..+.+  
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~------------~~-~~~~l~~~~~~~~~~~~~~spdg--~~l~~~~~~~~  260 (396)
T 3c5m_A          196 RPFDDSTVGFCHEGPHDLVDARMWLVNED------------GS-NVRKIKEHAEGESCTHEFWIPDG--SAMAYVSYFKG  260 (396)
T ss_dssp             ETTEEEEEEEEECSCSSSCSCCCEEEETT------------SC-CCEESSCCCTTEEEEEEEECTTS--SCEEEEEEETT
T ss_pred             CCCCCCEEEEEecCCCCCCCceEEEEECC------------CC-ceeEeeccCCCccccceEECCCC--CEEEEEecCCC
Confidence            99 78877766543      357888772            11 12222222  2357788999885  666665443  


Q ss_pred             ---CcEEEEeCCCCcEEEEEecCCceeEEEeCC-CCCeEEEEc----------------cCCcEEEEecccccccccccc
Q 035621          203 ---CTCKFWRLLNGTHLSTVTFPCAIMGLALDP-TETDFFAAG----------------SDGLIYKGLLKYQSRQQMHKG  262 (387)
Q Consensus       203 ---~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----------------~dg~i~i~d~~~~~~~~~~~~  262 (387)
                         +.|++||+.+++.......+. .. +.|+| +|+.++.++                .+..|++||+..+...     
T Consensus       261 ~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----  333 (396)
T 3c5m_A          261 QTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-----  333 (396)
T ss_dssp             TCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-----
T ss_pred             CccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-----
Confidence               449999999887654433332 33 89999 999888754                3478999998764321     


Q ss_pred             ceeEeecccccc-----------cEEEEEEecCCCEEEEEeC-CCc--EEEEECCCccEEEE
Q 035621          263 QELVTLANRHDG-----------VVVSVMMMNEGKNLVSAAE-DGS--VYIWEIEKRQVVMV  310 (387)
Q Consensus       263 ~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~  310 (387)
                       .+    ..+..           .+..++|+|+|+.|+..+. ++.  |..+++.+++....
T Consensus       334 -~l----~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~  390 (396)
T 3c5m_A          334 -KL----CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLE  390 (396)
T ss_dssp             -EE----EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC---
T ss_pred             -Ec----cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccc
Confidence             11    12222           2566789999998887664 454  44455555554433

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=4.9e-19  Score=154.36  Aligned_cols=238  Identities=9%  Similarity=0.074  Sum_probs=165.2

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCC-CCceeEeccCC-CCCceeEEEcCccceeeeccccCC-------------CCCeE
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPS-SGAILAHFSGS-RSPRRGLTFAGKPFIAASHISPTT-------------GSGSV   66 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~-------------~d~~v   66 (387)
                      ++|+|+|++|++++.+ .|.+|++. +++........ .+.+..++|+|++..+  .++++.             .++.+
T Consensus        45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l--~~~~~~~~~~~~~~~~~~~~~g~v  121 (365)
T 1jof_A           45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAI--FLLAAKQPPYAVYANPFYKFAGYG  121 (365)
T ss_dssp             EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEE--EEEECSSTTCCEEEEEESSSCCEE
T ss_pred             EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEE--EEEEecCCcceeccceeecCCceE
Confidence            5789999999988887 89999997 77765433211 1236678999976521  111232             68899


Q ss_pred             EEEEcc-CCCcccccC-----CCCCeeeEEeccCCCEEEEec-CCCcEEEEeCC-CCcee--EEcc--CCCCCeEEEEEc
Q 035621           67 HLYNLW-SSTPLHNIP-----VPEPVAPLATTADGSYLFTGG-LSGNVYAISVP-KGDIL--RSFS--AHDKPVSCLKIS  134 (387)
Q Consensus        67 ~vw~~~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~--~~~~--~~~~~v~~~~~~  134 (387)
                      .+|++. +++....+.     +...+.+++|+|+|++++++. .++.|.+|++. +++..  ..+.  .|...+..++|+
T Consensus       122 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s  201 (365)
T 1jof_A          122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH  201 (365)
T ss_dssp             EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC
T ss_pred             EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC
Confidence            999997 455443332     346789999999999888765 36799999998 67653  2333  245679999999


Q ss_pred             CCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccc------eEeee----ccCC------CeEEEE-EeeCCCCceE
Q 035621          135 PDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLM------LQKFV----AHND------SVTAIT-CCIGSFNSII  196 (387)
Q Consensus       135 ~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~----~~~~------~i~~~~-~~~~~~~~~l  196 (387)
                      |+|+++++++. ++.|.+|++..          ..+..      +..+.    +|..      .+..++ |+|++  ++|
T Consensus       202 pdg~~l~v~~~~~~~v~v~~~~~----------~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG--~~l  269 (365)
T 1jof_A          202 PTGNYLYALMEAGNRICEYVIDP----------ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG--KYM  269 (365)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECT----------TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS--SEE
T ss_pred             CCCCEEEEEECCCCeEEEEEEeC----------CCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC--CEE
Confidence            99999888775 68999998731          01111      11111    1222      478899 99885  676


Q ss_pred             EEEeCC-C-----cEEEEeCC-CCcEEE---EEe-cCCceeEEEeCC---CCCeEEEEcc-CCcEEEEecccc
Q 035621          197 ISCSMD-C-----TCKFWRLL-NGTHLS---TVT-FPCAIMGLALDP---TETDFFAAGS-DGLIYKGLLKYQ  254 (387)
Q Consensus       197 ~s~~~d-~-----~i~iwd~~-~~~~~~---~~~-~~~~v~~~~~~~---~~~~l~~~~~-dg~i~i~d~~~~  254 (387)
                      +++..+ .     .|.+|++. +++...   .+. ....+..++|+|   +|++|++++. ++.|.+|++...
T Consensus       270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            665542 2     89999996 566443   233 344677899999   8999999987 489999998763

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.85  E-value=3.3e-18  Score=146.66  Aligned_cols=277  Identities=9%  Similarity=0.006  Sum_probs=198.8

Q ss_pred             CCCcEEEEeCCCCceeEecc------CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeE
Q 035621           16 PEGPITAYNPSSGAILAHFS------GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPL   89 (387)
Q Consensus        16 ~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~   89 (387)
                      .++.|.++|.++++....+.      ........+.+..+..+..     ...++.|.+||..+++.+..+........+
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~-----~~~~~~v~viD~~t~~~~~~i~~~~~p~~i   89 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIV-----VNNSHVIFAIDINTFKEVGRITGFTSPRYI   89 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEE-----EGGGTEEEEEETTTCCEEEEEECCSSEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEE-----EcCCCEEEEEECcccEEEEEcCCCCCCcEE
Confidence            47899999999998776542      1223367788877655554     346789999999999998888766789999


Q ss_pred             EeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCC-----CCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCcccccCC
Q 035621           90 ATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHD-----KPVSCLKISPDGSLLISGG--DDGVIATVPIFQLVDEHT  162 (387)
Q Consensus        90 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~  162 (387)
                      +++++++..++...++.|.+||+.+++....+....     .....+++  ++..++++.  .++.|.++|+        
T Consensus        90 ~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~--------  159 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDT--------  159 (328)
T ss_dssp             EEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEET--------
T ss_pred             EEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEEC--------
Confidence            999998544444378999999999998877665332     14567777  344555554  4889999998        


Q ss_pred             CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC----------CcEEEEeCCCCcEEEEEec--CCceeEEEe
Q 035621          163 DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD----------CTCKFWRLLNGTHLSTVTF--PCAIMGLAL  230 (387)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~--~~~v~~~~~  230 (387)
                          .+......+... .....+.+.+++  ++++++..+          +.|.++|..+++....+..  ...+..+++
T Consensus       160 ----~t~~~~~~i~~g-~~p~~i~~~~dG--~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~  232 (328)
T 3dsm_A          160 ----ETDKVVDELTIG-IQPTSLVMDKYN--KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL  232 (328)
T ss_dssp             ----TTTEEEEEEECS-SCBCCCEECTTS--EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred             ----CCCeEEEEEEcC-CCccceEEcCCC--CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE
Confidence                344444444432 234567777764  777776654          7899999999988877765  347899999


Q ss_pred             CCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEE----eCCCcEEEEECCCc
Q 035621          231 DPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSA----AEDGSVYIWEIEKR  305 (387)
Q Consensus       231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~----~~dg~i~iwd~~~~  305 (387)
                      +|+++.++++..  .|++||..+......       .+.......+..++++| ++.++++.    ..++.|.+||.. +
T Consensus       233 ~~d~~~lyv~~~--~v~~~d~~t~~~~~~-------~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g  302 (328)
T 3dsm_A          233 NGTRDTLYWINN--DIWRMPVEADRVPVR-------PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G  302 (328)
T ss_dssp             CTTSCEEEEESS--SEEEEETTCSSCCSS-------CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C
T ss_pred             ecCCCEEEEEcc--EEEEEECCCCceeee-------eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C
Confidence            999999998865  899999876442110       01111245688999999 55566665    578899999998 9


Q ss_pred             cEEEEeecccCCCceeEEEEe
Q 035621          306 QVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       306 ~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      +.+.++...  ..+..++|..
T Consensus       303 ~~~~~i~~G--~~P~~~~~~~  321 (328)
T 3dsm_A          303 KLIDEFYVG--IIPGAFCWKL  321 (328)
T ss_dssp             CEEEEEEEE--ESEEEEEEEC
T ss_pred             CEEEEEEec--cCcceEEEec
Confidence            999988743  3566666653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.85  E-value=5.7e-18  Score=159.56  Aligned_cols=283  Identities=12%  Similarity=-0.004  Sum_probs=188.7

Q ss_pred             ccccCCCcEEEee--CCCCcEEEEeCCCCceeEeccCCCCCce---------eEEEc--Cccce-eeeccccCCCCCeEE
Q 035621            2 LHHLPCNEVILTS--SPEGPITAYNPSSGAILAHFSGSRSPRR---------GLTFA--GKPFI-AASHISPTTGSGSVH   67 (387)
Q Consensus         2 l~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-~~~~~~~~~~d~~v~   67 (387)
                      ++|++++-+++..  +.++...||....+.....+..|...+.         ...|+  |++.. ++.   +...+..|.
T Consensus        29 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~---~~~~~~~l~  105 (662)
T 3azo_A           29 VGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF---THFGDQRLY  105 (662)
T ss_dssp             EEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE---EBTTTCCEE
T ss_pred             eEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE---EECCCCeEE
Confidence            3577776677776  6688899999655555667777776666         66666  75543 221   133466777


Q ss_pred             EEEcc--C-CCcccccC-----CCCCeeeEEeccCCCEEEEecCC----------CcEEEEeCCC------CceeEEcc-
Q 035621           68 LYNLW--S-STPLHNIP-----VPEPVAPLATTADGSYLFTGGLS----------GNVYAISVPK------GDILRSFS-  122 (387)
Q Consensus        68 vw~~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~------~~~~~~~~-  122 (387)
                      ++++.  . ++......     +...+..++|+|||+.|++++.+          ..|++||+.+      ++. ..+. 
T Consensus       106 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~  184 (662)
T 3azo_A          106 AFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSD  184 (662)
T ss_dssp             EECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSC
T ss_pred             EEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEe
Confidence            77775  3 44333333     34568899999999999988876          5899999987      554 4555 


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCC--------cEEEEeCCcccccCCCCCCCCc---cceEeeeccCCCeEEEEEeeCC
Q 035621          123 AHDKPVSCLKISPDGSLLISGGDDG--------VIATVPIFQLVDEHTDDKNPDD---LMLQKFVAHNDSVTAITCCIGS  191 (387)
Q Consensus       123 ~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~  191 (387)
                      .+...+..++|+|||++|+.++.++        .|++||+..           .+   ........|...+..+.|+|++
T Consensus       185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~-----------~g~~~~~~~l~~~~~~~~~~~~~spdg  253 (662)
T 3azo_A          185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTE-----------DGRFADTRTLLGGPEEAIAQAEWAPDG  253 (662)
T ss_dssp             SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECT-----------TSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred             cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECC-----------CCcccccEEeCCCCCceEcceEECCCC
Confidence            5567788899999999999887553        799999821           22   2333334457889999999986


Q ss_pred             CCceEEEEeCCC--cEEEEeCCCCcEEEEEecCCc---------eeEEEeCCCCCeEEEEccCCcEEEEecccccccccc
Q 035621          192 FNSIIISCSMDC--TCKFWRLLNGTHLSTVTFPCA---------IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMH  260 (387)
Q Consensus       192 ~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  260 (387)
                        ++++++..++  .|.+||+.+++..........         +..++|+|++++++++.. +.+++|.+....     
T Consensus       254 --~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~-----  325 (662)
T 3azo_A          254 --SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES-----  325 (662)
T ss_dssp             --CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT-----
T ss_pred             --eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC-----
Confidence              6888888888  677777766765443332221         467899999999999998 999999554311     


Q ss_pred             ccceeEeecccccccEEEE-EEecCCCEEEEEeCCC--cEEEEECCCccEEEE
Q 035621          261 KGQELVTLANRHDGVVVSV-MMMNEGKNLVSAAEDG--SVYIWEIEKRQVVMV  310 (387)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~  310 (387)
                        ... ..+..|...+..+ +++++.-++++++.+.  .|.+||+.+++....
T Consensus       326 --~~~-~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          326 --GEL-VDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             --TEE-EECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             --CcE-EEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence              122 2223456667766 5544333444555554  466667777776543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=2e-17  Score=139.11  Aligned_cols=239  Identities=13%  Similarity=0.156  Sum_probs=171.4

Q ss_pred             CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC-------CCCeeeEEe-ccCCCEEEEecC-CCc
Q 035621           36 GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV-------PEPVAPLAT-TADGSYLFTGGL-SGN  106 (387)
Q Consensus        36 ~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~-------~~~v~~~~~-~~~~~~l~~~~~-dg~  106 (387)
                      ++-..+.++++++++.+..    +...++.|.+||.. ++....+..       ...+..+++ .++++++++... ++.
T Consensus        27 g~~~~p~~v~~~~~g~l~v----~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~  101 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIV----ADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ  101 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEE----EEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred             CccCCCceEEECCCCCEEE----EECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence            4555688999998654333    24678999999976 555544432       246788999 467766666533 789


Q ss_pred             EEEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee--ccCCCeE
Q 035621          107 VYAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSVT  183 (387)
Q Consensus       107 i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~  183 (387)
                      |.+|| .+++.+..+. .+...+.+++++|+++++++...++.|.+||.             ....+..+.  .+...+.
T Consensus       102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-------------~g~~~~~~~~~~~~~~p~  167 (286)
T 1q7f_A          102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-------------NGNVLHKFGCSKHLEFPN  167 (286)
T ss_dssp             EEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-------------TSCEEEEEECTTTCSSEE
T ss_pred             EEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-------------CCCEEEEeCCCCccCCcE
Confidence            99999 5777776664 34467899999999998888778899999986             222333332  3445688


Q ss_pred             EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC---CceeEEEeCCCCCeEEEEccCC-cEEEEeccccccccc
Q 035621          184 AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP---CAIMGLALDPTETDFFAAGSDG-LIYKGLLKYQSRQQM  259 (387)
Q Consensus       184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~  259 (387)
                      .+++.+++  +++++...++.|++||. +++.+..+...   ..+..++++++|+++++...++ .|.+|+...      
T Consensus       168 ~i~~~~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g------  238 (286)
T 1q7f_A          168 GVVVNDKQ--EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG------  238 (286)
T ss_dssp             EEEECSSS--EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS------
T ss_pred             EEEECCCC--CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC------
Confidence            99998874  78888778999999997 56666666533   5789999999998888887775 999999543      


Q ss_pred             cccceeEeecc-cccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621          260 HKGQELVTLAN-RHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       260 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  306 (387)
                         ..+..+.. .....+.+++++|+|+++++ +.|+.|++|++....
T Consensus       239 ---~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          239 ---QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             ---CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             ---CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence               11111111 12234789999999987777 579999999986543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.83  E-value=9.8e-17  Score=146.17  Aligned_cols=297  Identities=10%  Similarity=0.066  Sum_probs=205.9

Q ss_pred             cCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc--CCCcccccCC
Q 035621            5 LPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW--SSTPLHNIPV   82 (387)
Q Consensus         5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~--~~~~~~~~~~   82 (387)
                      +|.+.++++...++.|.++|..+++.+.++.... .+..+.++|++.++..    ++.++.|.+||+.  +++.+..+..
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv----~~~dg~V~viD~~~~t~~~v~~i~~  238 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFV----IGRDGKVNMIDLWMKEPTTVAEIKI  238 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEE----EETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEE----EcCCCeEEEEECCCCCCcEeEEEec
Confidence            3445677888889999999999999998887443 4678999997654432    5678999999996  7777777777


Q ss_pred             CCCeeeEEec----cCCCEEEEecC-CCcEEEEeCCCCceeEEccCC---------------------------------
Q 035621           83 PEPVAPLATT----ADGSYLFTGGL-SGNVYAISVPKGDILRSFSAH---------------------------------  124 (387)
Q Consensus        83 ~~~v~~~~~~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~---------------------------------  124 (387)
                      ......++|+    |||++++++.. ++++.++|..+.+.+..+...                                 
T Consensus       239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence            6778899999    69999888764 589999999888776654311                                 


Q ss_pred             ----------------------CCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEeeec----
Q 035621          125 ----------------------DKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA----  177 (387)
Q Consensus       125 ----------------------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----  177 (387)
                                            ......+.|+|++++++++. .++.|.++|+            .+.+....+..    
T Consensus       319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~------------~t~kl~~~i~vgg~~  386 (567)
T 1qks_A          319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT------------KEGKLVAIEDTGGQT  386 (567)
T ss_dssp             TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET------------TTTEEEEEEECSSSS
T ss_pred             CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEEC------------CCCcEEEEEeccCcC
Confidence                                  01123567889998876665 5788999998            33344433332    


Q ss_pred             -cCCCeEEEEEeeCCCCceEEEEe-CCCcEEEEeCCC-------CcEEEEEecC-CceeEEEeCCCCCeEEEEcc-----
Q 035621          178 -HNDSVTAITCCIGSFNSIIISCS-MDCTCKFWRLLN-------GTHLSTVTFP-CAIMGLALDPTETDFFAAGS-----  242 (387)
Q Consensus       178 -~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~-------~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-----  242 (387)
                       |.+.-..+ ++|+. +..++++. .+++|.++|..+       .+.++++... ..-..+..+|+++++++...     
T Consensus       387 Phpg~g~~~-~~p~~-g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~  464 (567)
T 1qks_A          387 PHPGRGANF-VHPTF-GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA  464 (567)
T ss_dssp             BCCTTCEEE-EETTT-EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred             CCCccceee-ECCCC-CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence             32211112 45553 45555554 468999999987       6778888754 33456789999999999773     


Q ss_pred             --CCcEEEEeccccccccccccceeEee-----cccccccEEEEEEecCCCEEEEEe-----CCCcEEEEECCCccEEEE
Q 035621          243 --DGLIYKGLLKYQSRQQMHKGQELVTL-----ANRHDGVVVSVMMMNEGKNLVSAA-----EDGSVYIWEIEKRQVVMV  310 (387)
Q Consensus       243 --dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~  310 (387)
                        .+.|.++|+.+...............     +......+..+.|+|+|+.+..+.     .++.|.|+|.++++++..
T Consensus       465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~  544 (567)
T 1qks_A          465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHV  544 (567)
T ss_dssp             HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred             ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEE
Confidence              46999999987411000001011110     011245789999999999877653     378999999999999999


Q ss_pred             eecccCCCce
Q 035621          311 LKNELAGSIS  320 (387)
Q Consensus       311 ~~~~~~~~v~  320 (387)
                      ++...-..++
T Consensus       545 i~~~~~~~P~  554 (567)
T 1qks_A          545 IKDERLVTPT  554 (567)
T ss_dssp             ECCTTCCSEE
T ss_pred             eCCCcccCCC
Confidence            9864333333

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.83  E-value=8.6e-18  Score=144.24  Aligned_cols=235  Identities=13%  Similarity=0.134  Sum_probs=173.9

Q ss_pred             ccccCCCcEEEeeCCC------------------------CcEEEEeCCCCceeEecc-CCCCCceeEEEcCccceeeec
Q 035621            2 LHHLPCNEVILTSSPE------------------------GPITAYNPSSGAILAHFS-GSRSPRRGLTFAGKPFIAASH   56 (387)
Q Consensus         2 l~~s~~~~~l~~~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~   56 (387)
                      ++++|+|+++++...+                        +.|.+||..+++.+..+. ++...+..+++++++.+..  
T Consensus        29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v--  106 (329)
T 3fvz_A           29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWV--  106 (329)
T ss_dssp             EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEE--
T ss_pred             EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEE--
Confidence            5789999999988877                        479999999898877664 4445688999998655433  


Q ss_pred             cccCCCCCeEEEEEccCCC-cccccC----------CCCCeeeEEecc-CCCEEEEec-CCCcEEEEeCCCCceeEEccC
Q 035621           57 ISPTTGSGSVHLYNLWSST-PLHNIP----------VPEPVAPLATTA-DGSYLFTGG-LSGNVYAISVPKGDILRSFSA  123 (387)
Q Consensus        57 ~~~~~~d~~v~vw~~~~~~-~~~~~~----------~~~~v~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  123 (387)
                        +...++.|++|+..... .+..+.          +-..+..++++| ++.++++.+ .++.|++|+ .+++.+..+..
T Consensus       107 --~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~  183 (329)
T 3fvz_A          107 --TDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGE  183 (329)
T ss_dssp             --EETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECE
T ss_pred             --EECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEecc
Confidence              35678999999975442 344332          223688999999 788888876 689999999 57777776642


Q ss_pred             C----------CCCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee--eccCCCeEEEEEeeC
Q 035621          124 H----------DKPVSCLKISPD-GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF--VAHNDSVTAITCCIG  190 (387)
Q Consensus       124 ~----------~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~  190 (387)
                      .          ......++++|+ +.++++...++.|++||.            ..+..+..+  ..+...+..++++|.
T Consensus       184 ~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~------------~~G~~~~~~~~~~~~~~~~~~~~~pg  251 (329)
T 3fvz_A          184 ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKT------------DTKEFVREIKHASFGRNVFAISYIPG  251 (329)
T ss_dssp             ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEET------------TTCCEEEEECCTTTTTCEEEEEEETT
T ss_pred             CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEEC------------CCCcEEEEEeccccCCCcceeeecCC
Confidence            2          234899999998 777777778899999998            334445554  245567788888871


Q ss_pred             C----CCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621          191 S----FNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       191 ~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                      .    +++.+++...+..|++||+.+++.+..+.    +...+..++++|+|..+++...++.|++|++..
T Consensus       252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            0    01223333345689999999999998874    345689999999997777788899999999864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.83  E-value=8.9e-18  Score=144.15  Aligned_cols=219  Identities=10%  Similarity=0.143  Sum_probs=162.4

Q ss_pred             CeEEEEEccCCCcccccCC--CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-eeEEc---------cCCCCCeEEE
Q 035621           64 GSVHLYNLWSSTPLHNIPV--PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD-ILRSF---------SAHDKPVSCL  131 (387)
Q Consensus        64 ~~v~vw~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---------~~~~~~v~~~  131 (387)
                      +.|.+||..+++....+..  -..+..++++|+|+++++...++.|++||..... .+..+         ..+...+..+
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i  148 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV  148 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence            5799999988887665542  2478899999999988888888999999975442 44544         2345578999


Q ss_pred             EEcC-CCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEeeec----------cCCCeEEEEEeeCCCCceEEEE
Q 035621          132 KISP-DGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA----------HNDSVTAITCCIGSFNSIIISC  199 (387)
Q Consensus       132 ~~~~-~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~l~s~  199 (387)
                      +++| +++++++.+ .++.|++||.             .+..+..+..          +-.....+++.|+. +.++++.
T Consensus       149 a~~~~~g~lyv~d~~~~~~I~~~~~-------------~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~l~v~d  214 (329)
T 3fvz_A          149 AVEPSTGAVFVSDGYCNSRIVQFSP-------------SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQLCVAD  214 (329)
T ss_dssp             EECTTTCCEEEEECSSCCEEEEECT-------------TSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TEEEEEE
T ss_pred             EEeCCCCeEEEEeCCCCCeEEEEcC-------------CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CEEEEEE
Confidence            9999 788888876 6899999985             2333333322          22347889998873 4788888


Q ss_pred             eCCCcEEEEeCCCCcEEEEEe---cCCceeEEEeCC------CCCeEEEEccCCcEEEEeccccccccccccceeEee--
Q 035621          200 SMDCTCKFWRLLNGTHLSTVT---FPCAIMGLALDP------TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL--  268 (387)
Q Consensus       200 ~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--  268 (387)
                      ..++.|++||..+++.+..+.   ....+..++++|      +++.+++...+..|++|+..++...        ..+  
T Consensus       215 ~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~--------~~~~~  286 (329)
T 3fvz_A          215 RENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII--------DVFKP  286 (329)
T ss_dssp             TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEE--------EEECC
T ss_pred             CCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEE--------EEEcC
Confidence            889999999999899888885   345788999999      3332223334558999998774322        221  


Q ss_pred             cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          269 ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       269 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      ...+...+..++++|+|.++++...++.|++|++..
T Consensus       287 ~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          287 VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            135667799999999998888888999999999764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.82  E-value=2.6e-17  Score=141.61  Aligned_cols=263  Identities=10%  Similarity=0.045  Sum_probs=181.9

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI-   80 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~-   80 (387)
                      ++|+|++..++..+.++.++.|   .++....+..+...+.+++|++++.+..    ++..++.|.+||..+++..... 
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~----~~~~~~~i~~~d~~~~~~~~~~~   83 (333)
T 2dg1_A           11 LFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFL----LDVFEGNIFKINPETKEIKRPFV   83 (333)
T ss_dssp             CCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEE----EETTTCEEEEECTTTCCEEEEEE
T ss_pred             eeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEE----EECCCCEEEEEeCCCCcEEEEee
Confidence            5788988888887888999999   3556666777777789999998665433    2567889999999887765443 


Q ss_pred             CCCCCeeeEEeccCCCEEEEecCC----CcEEEEeCCCCceeEEcc--CCCCCeEEEEEcCCCCEEEEEeC------CCc
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLS----GNVYAISVPKGDILRSFS--AHDKPVSCLKISPDGSLLISGGD------DGV  148 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------dg~  148 (387)
                      .....+.+++++++|+++++...+    +.|.+||..+++....+.  .+...+.+++++|+++++++...      .+.
T Consensus        84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~  163 (333)
T 2dg1_A           84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG  163 (333)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred             CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence            355789999999999988877665    689999998877553332  24457899999999987776653      245


Q ss_pred             EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCc-eEEEEeCCCcEEEEeCCC-CcEEEEE------e
Q 035621          149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNS-IIISCSMDCTCKFWRLLN-GTHLSTV------T  220 (387)
Q Consensus       149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~-~~~~~~~------~  220 (387)
                      |..+|.            ... ....+..+...+..++++|++  + ++++.+.++.|.+||+.+ +..+..+      .
T Consensus       164 l~~~~~------------~~~-~~~~~~~~~~~~~~i~~~~dg--~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~  228 (333)
T 2dg1_A          164 VYYVSP------------DFR-TVTPIIQNISVANGIALSTDE--KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY  228 (333)
T ss_dssp             EEEECT------------TSC-CEEEEEEEESSEEEEEECTTS--SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred             EEEEeC------------CCC-EEEEeecCCCcccceEECCCC--CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe
Confidence            555554            111 222233334457889998874  5 445556678999999964 3332211      1


Q ss_pred             cC--CceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecc-----cccccEEEEEEecCCCEEEEEeC
Q 035621          221 FP--CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLAN-----RHDGVVVSVMMMNEGKNLVSAAE  293 (387)
Q Consensus       221 ~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~  293 (387)
                      ..  ..+..++++++|+++++...++.|.+||....         ....+..     +|...+.+++|+|+++.|+.++.
T Consensus       229 ~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~---------~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          229 FTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY---------PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             CCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC---------EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             cCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCCC---------EEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence            12  36788999999988777777889999987431         1111110     12226889999999877766555


Q ss_pred             CC
Q 035621          294 DG  295 (387)
Q Consensus       294 dg  295 (387)
                      ++
T Consensus       300 ~g  301 (333)
T 2dg1_A          300 DI  301 (333)
T ss_dssp             CG
T ss_pred             cc
Confidence            53

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.82  E-value=2.4e-17  Score=138.64  Aligned_cols=228  Identities=11%  Similarity=0.148  Sum_probs=168.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEecc------CCCCCceeEEEc-CccceeeeccccCC-CCCeEEEEEccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFS------GSRSPRRGLTFA-GKPFIAASHISPTT-GSGSVHLYNLWS   73 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~~~~~~~~~~-~d~~v~vw~~~~   73 (387)
                      ++++|+|+++++...++.|.+||.. ++.+..+.      ++...+..+++. +++.+...    .. .++.|.+|| .+
T Consensus        35 v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~----~~~~~~~i~~~d-~~  108 (286)
T 1q7f_A           35 VAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVT----ERSPTHQIQIYN-QY  108 (286)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEE----ECGGGCEEEEEC-TT
T ss_pred             EEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEE----cCCCCCEEEEEC-CC
Confidence            5688999988888888999999976 66666553      234568899994 54433322    22 378999999 56


Q ss_pred             CCcccccCC--CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc--CCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 035621           74 STPLHNIPV--PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS--AHDKPVSCLKISPDGSLLISGGDDGVI  149 (387)
Q Consensus        74 ~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i  149 (387)
                      ++.+..+..  ...+..++++++|+++++...++.|.+||. +++.+..+.  .+...+..++++|+++++++...++.|
T Consensus       109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i  187 (286)
T 1q7f_A          109 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  187 (286)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEE
Confidence            666655542  356899999999998888778899999996 466666553  345678999999999988887889999


Q ss_pred             EEEeCCcccccCCCCCCCCccceEeeecc--CCCeEEEEEeeCCCCceEEEEeCCC-cEEEEeCCCCcEEEEEecC---C
Q 035621          150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAH--NDSVTAITCCIGSFNSIIISCSMDC-TCKFWRLLNGTHLSTVTFP---C  223 (387)
Q Consensus       150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~---~  223 (387)
                      ++||.             ....+..+..+  ...+..+++.+++  +++++...++ .|.+||. +++.+..+...   .
T Consensus       188 ~~~~~-------------~g~~~~~~~~~g~~~~p~~i~~d~~G--~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~  251 (286)
T 1q7f_A          188 KVFNY-------------EGQYLRQIGGEGITNYPIGVGINSNG--EILIADNHNNFNLTIFTQ-DGQLISALESKVKHA  251 (286)
T ss_dssp             EEEET-------------TCCEEEEESCTTTSCSEEEEEECTTC--CEEEEECSSSCEEEEECT-TSCEEEEEEESSCCS
T ss_pred             EEEcC-------------CCCEEEEEccCCccCCCcEEEECCCC--CEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCC
Confidence            99997             22233444332  3567889988764  7888887775 9999995 56677776532   3


Q ss_pred             ceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621          224 AIMGLALDPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       224 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                      .+..++++|+|+++++ +.++.|++|++..
T Consensus       252 ~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          252 QCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             CEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             cceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            4789999999986666 5689999998765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=1e-17  Score=145.43  Aligned_cols=261  Identities=8%  Similarity=0.016  Sum_probs=176.7

Q ss_pred             ccccCCCcEEEeeC----------CCCcEEEEeCCCCceeEeccCC------CCCceeEEEcCccceeeeccccCCCCCe
Q 035621            2 LHHLPCNEVILTSS----------PEGPITAYNPSSGAILAHFSGS------RSPRRGLTFAGKPFIAASHISPTTGSGS   65 (387)
Q Consensus         2 l~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~d~~   65 (387)
                      ++|||||+++++++          .++.|.+||..+++.+.++...      ......++++|++.++...  ....++.
T Consensus        55 i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~--n~~~~~~  132 (361)
T 2oiz_A           55 VQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQ--NASPATS  132 (361)
T ss_dssp             EEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEE--EESSSEE
T ss_pred             eEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEE--CCCCCCe
Confidence            57999999998875          3677999999999988877532      3457889999976544320  0123689


Q ss_pred             EEEEEccCCCcccc-cCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCC-CceeE------EccCCCCCeEEEEEcCC
Q 035621           66 VHLYNLWSSTPLHN-IPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPK-GDILR------SFSAHDKPVSCLKISPD  136 (387)
Q Consensus        66 v~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-~~~~~------~~~~~~~~v~~~~~~~~  136 (387)
                      |.+||+.+++.+.. +..... ..+.+.|++ ..+++.+.||.+.+|++.. ++...      .+.....++ .+.++|+
T Consensus       133 v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~  210 (361)
T 2oiz_A          133 IGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALD  210 (361)
T ss_dssp             EEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEEC
T ss_pred             EEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEeccc
Confidence            99999999988777 665433 224566765 5677788899999999865 55441      222222222 3344677


Q ss_pred             CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec------c----CCCeEEEEEeeCCCCceEEEEe------
Q 035621          137 GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA------H----NDSVTAITCCIGSFNSIIISCS------  200 (387)
Q Consensus       137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~i~~~~~~~~~~~~~l~s~~------  200 (387)
                      +..++..+.++.+.++|+...          .......+..      +    ......++++|++ +.++++..      
T Consensus       211 g~~~~~~~~~~~v~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg-~~lyv~~~~~~~~~  279 (361)
T 2oiz_A          211 KDKAHFVSYYGNVYSADFSGD----------EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRAS-GRMYVFMHPDGKEG  279 (361)
T ss_dssp             SSEEEEEBTTSEEEEEECSSS----------SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTT-TEEEEEEESSCCTT
T ss_pred             CCEEEEEeCCCeEEEEEecCC----------CceecccccccCccccccccccCCeeEEEEecCC-CeEEEEEccCCCcc
Confidence            777777888999999998321          1011111110      0    0111226788875 23344333      


Q ss_pred             ----CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621          201 ----MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV  276 (387)
Q Consensus       201 ----~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  276 (387)
                          ..+.|.+||+.+++.+.++..+. +.+++|+|+|++|++++. +.|.+||..+...      ..+.. ...+....
T Consensus       280 ~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l------~~~~~-i~~~G~~P  350 (361)
T 2oiz_A          280 THKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP------KLLRT-IEGAAEAS  350 (361)
T ss_dssp             CTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSC------EEEEE-ETTSCSSE
T ss_pred             cccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc------eeeEE-eccCCCCc
Confidence                13489999999999999998777 999999999999999887 9999999987310      22222 22456778


Q ss_pred             EEEEEecCCC
Q 035621          277 VSVMMMNEGK  286 (387)
Q Consensus       277 ~~~~~s~~~~  286 (387)
                      ..++++|+|+
T Consensus       351 ~~~~~~p~G~  360 (361)
T 2oiz_A          351 LQVQFHPVGG  360 (361)
T ss_dssp             EEEEECCCSC
T ss_pred             EEEEecCCCC
Confidence            8999999985

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.81  E-value=1.1e-16  Score=151.47  Aligned_cols=280  Identities=8%  Similarity=-0.031  Sum_probs=185.2

Q ss_pred             ccCCCcEEEeeCCCC-----cEEEEeCCCCceeEec------cCCCCCceeEEEcCccceeeeccc-cCCCCCeEEEEEc
Q 035621            4 HLPCNEVILTSSPEG-----PITAYNPSSGAILAHF------SGSRSPRRGLTFAGKPFIAASHIS-PTTGSGSVHLYNL   71 (387)
Q Consensus         4 ~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~-~~~~d~~v~vw~~   71 (387)
                      .+|+|++++....++     .|++.+...++....+      .+|...+..++|+|++..++-... .|+.+..|++||+
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence            568898887765433     2455554445433322      245556889999998765552221 4666789999999


Q ss_pred             cCCCcc-cccCCCCCeeeEEeccCCCEEEEecCCCc-------------EEEEeCCCCc----eeEEccCCCCCeEEEEE
Q 035621           72 WSSTPL-HNIPVPEPVAPLATTADGSYLFTGGLSGN-------------VYAISVPKGD----ILRSFSAHDKPVSCLKI  133 (387)
Q Consensus        72 ~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~----~~~~~~~~~~~v~~~~~  133 (387)
                      .+++.+ ...........++|+|||+.|+.++.+..             |++|++.+++    ++.....|...+..+.|
T Consensus       155 ~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~  234 (695)
T 2bkl_A          155 DSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL  234 (695)
T ss_dssp             TTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred             CCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence            998865 21111112378999999999999887765             9999998876    33334445667899999


Q ss_pred             cCCCCEEEEEeCCC----cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe---CCCcEE
Q 035621          134 SPDGSLLISGGDDG----VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS---MDCTCK  206 (387)
Q Consensus       134 ~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~---~d~~i~  206 (387)
                      +|||++|+.++.++    .|.+|+.            ... ....+..+...+....+ +++  .+++...   .++.|.
T Consensus       235 SpDG~~l~~~~~~~~~~~~l~~~~~------------~~~-~~~~l~~~~~~~~~~~~-~~g--~l~~~s~~~~~~~~l~  298 (695)
T 2bkl_A          235 SRDGKYLFVYILRGWSENDVYWKRP------------GEK-DFRLLVKGVGAKYEVHA-WKD--RFYVLTDEGAPRQRVF  298 (695)
T ss_dssp             CTTSCCEEEEEEETTTEEEEEEECT------------TCS-SCEEEEECSSCCEEEEE-ETT--EEEEEECTTCTTCEEE
T ss_pred             CCCCCEEEEEEeCCCCceEEEEEcC------------CCC-ceEEeecCCCceEEEEe-cCC--cEEEEECCCCCCCEEE
Confidence            99999988887666    5666654            222 34445556666666655 554  4444444   257899


Q ss_pred             EEeCCCCcE---EEEEec--CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE
Q 035621          207 FWRLLNGTH---LSTVTF--PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM  281 (387)
Q Consensus       207 iwd~~~~~~---~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  281 (387)
                      +||+.+++.   ...+.+  ...+..++++ ++..+++...|+..++|.+...       +.....+...+.+.+..+++
T Consensus       299 ~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-------g~~~~~l~~~~~~~v~~~~~  370 (695)
T 2bkl_A          299 EVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK-------GKPVRTVQLPGVGAASNLMG  370 (695)
T ss_dssp             EEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT-------CCEEEECCCSSSSEECCCBS
T ss_pred             EEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC-------CCeeEEecCCCCeEEEEeec
Confidence            999987753   333333  3457788888 6677888888998888876631       11222222123567788889


Q ss_pred             ecCCCEEEEE----eCCCcEEEEECCCccE
Q 035621          282 MNEGKNLVSA----AEDGSVYIWEIEKRQV  307 (387)
Q Consensus       282 s~~~~~l~s~----~~dg~i~iwd~~~~~~  307 (387)
                      +|+++.++..    ...++|++||+.+++.
T Consensus       371 s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          371 LEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             CTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            9999877632    3457899999998874

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=9.4e-18  Score=159.77  Aligned_cols=290  Identities=9%  Similarity=0.015  Sum_probs=182.0

Q ss_pred             ccccCCCcEEEeeCCC---------CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEcc
Q 035621            2 LHHLPCNEVILTSSPE---------GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLW   72 (387)
Q Consensus         2 l~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~   72 (387)
                      ++|||||++|+.++.+         +.+.+||+.+++.. .+..|...+...+|+|++...+.    + .++.|++|++.
T Consensus        67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~----~-~~~~i~~~~~~  140 (740)
T 4a5s_A           67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAY----V-WNNDIYVKIEP  140 (740)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEE----E-ETTEEEEESST
T ss_pred             eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEE----E-ECCeEEEEECC
Confidence            4679999999998876         56679999988865 46677888999999997765543    2 57899999998


Q ss_pred             CCCcccccCCC--C-----------------CeeeEEeccCCCEEEEecCCC----------------------------
Q 035621           73 SSTPLHNIPVP--E-----------------PVAPLATTADGSYLFTGGLSG----------------------------  105 (387)
Q Consensus        73 ~~~~~~~~~~~--~-----------------~v~~~~~~~~~~~l~~~~~dg----------------------------  105 (387)
                      +++..+.....  .                 ....+.|||||+.|+.++.|.                            
T Consensus       141 ~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~  220 (740)
T 4a5s_A          141 NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK  220 (740)
T ss_dssp             TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred             CCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence            87755432211  1                 123589999999999875221                            


Q ss_pred             --------cEEEEeCCC---Cc--eeEEcc------CCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEeCCcccccCC
Q 035621          106 --------NVYAISVPK---GD--ILRSFS------AHDKPVSCLKISPDGSLLISGGD----DGVIATVPIFQLVDEHT  162 (387)
Q Consensus       106 --------~i~i~d~~~---~~--~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~  162 (387)
                              .|++||+.+   ++  ....+.      +|...+..++|+|||+.++....    +..|.+||+......  
T Consensus       221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~--  298 (740)
T 4a5s_A          221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR--  298 (740)
T ss_dssp             TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE--
T ss_pred             CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc--
Confidence                    488899988   73  222333      37778999999999996665533    336999998321000  


Q ss_pred             CCCCCCccceEee--eccCCCeE-----EEEEeeCCCCceEE-EEeC-C--CcEEEEeCCCCcEEEEEecCCceeEEEeC
Q 035621          163 DDKNPDDLMLQKF--VAHNDSVT-----AITCCIGSFNSIII-SCSM-D--CTCKFWRLLNGTHLSTVTFPCAIMGLALD  231 (387)
Q Consensus       163 ~~~~~~~~~~~~~--~~~~~~i~-----~~~~~~~~~~~~l~-s~~~-d--~~i~iwd~~~~~~~~~~~~~~~v~~~~~~  231 (387)
                          ........+  ..|...+.     ...|+|++  +.++ ..+. +  ..|.+||+..++..........+..+.. 
T Consensus       299 ----~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG--~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-  371 (740)
T 4a5s_A          299 ----WNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG--NSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-  371 (740)
T ss_dssp             ----EEECGGGCEEEECSSSCSSSSSCCCCEECTTS--SEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-
T ss_pred             ----cceeEEEEeeeccCCceEccCcCCCceEcCCC--CEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-
Confidence                000011111  34544443     67888886  5555 5543 3  4688889887665433334445555442 


Q ss_pred             CCCCeEEE-Ecc----CCcEEEEeccccccccccccceeEeec---ccccccEEEEEEecCCCEEEEEeCC---CcEEEE
Q 035621          232 PTETDFFA-AGS----DGLIYKGLLKYQSRQQMHKGQELVTLA---NRHDGVVVSVMMMNEGKNLVSAAED---GSVYIW  300 (387)
Q Consensus       232 ~~~~~l~~-~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iw  300 (387)
                      ++++.|+. +..    .+...+|.+.....      .....+.   .........+.|+|++++++.....   ..+.++
T Consensus       372 ~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~------~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~  445 (740)
T 4a5s_A          372 LTSDYLYYISNEYKGMPGGRNLYKIQLIDY------TKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLH  445 (740)
T ss_dssp             ECSSEEEEEESCGGGCTTCBEEEEEETTEE------EEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEE
T ss_pred             EeCCEEEEEEecCCCCCceeEEEEEECCCC------CcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEE
Confidence            34555544 443    24455555443211      0100111   1234568899999999987755433   468899


Q ss_pred             ECCCccEEEEee
Q 035621          301 EIEKRQVVMVLK  312 (387)
Q Consensus       301 d~~~~~~~~~~~  312 (387)
                      +..+++.+..+.
T Consensus       446 ~~~~~~~~~~l~  457 (740)
T 4a5s_A          446 SSVNDKGLRVLE  457 (740)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             ECCCCcEEEEec
Confidence            988887766554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.81  E-value=1.8e-16  Score=136.29  Aligned_cols=263  Identities=14%  Similarity=0.129  Sum_probs=176.3

Q ss_pred             CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce
Q 035621           39 SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI  117 (387)
Q Consensus        39 ~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  117 (387)
                      ..+.++.|+++...    ++..+.++.++.|.   ++....+. +...+.+++|+++|++++++..++.|.+||..+++.
T Consensus         6 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~   78 (333)
T 2dg1_A            6 QDLPTLFYSGKSNS----AVPIISESELQTIT---AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI   78 (333)
T ss_dssp             CCCCBCCSCGGGGC----SSCCCCGGGSCEEE---CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             cccceeeecCCccc----eeEEeecccCcccc---cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE
Confidence            34778888885332    33356788888882   33333332 445678999999999888888889999999988876


Q ss_pred             eEEccCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCcccccCCCCCCCCccceEeee--ccCCCeEEEEEeeCC
Q 035621          118 LRSFSAHDKPVSCLKISPDGSLLISGGDD----GVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSVTAITCCIGS  191 (387)
Q Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~  191 (387)
                      ......+...+.+++++|+++++++...+    +.|.+||..            .......+.  .+...+..+++.|++
T Consensus        79 ~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~------------~~~~~~~~~~~~~~~~~~~i~~d~~g  146 (333)
T 2dg1_A           79 KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN------------GDNLQDIIEDLSTAYCIDDMVFDSKG  146 (333)
T ss_dssp             EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT------------SCSCEEEECSSSSCCCEEEEEECTTS
T ss_pred             EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC------------CCEEEEEEccCccCCcccceEECCCC
Confidence            65444566789999999999988877666    689999873            222211111  234568889988874


Q ss_pred             CCceEEEEeC------CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEE-ccCCcEEEEeccccc-cccccccc
Q 035621          192 FNSIIISCSM------DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA-GSDGLIYKGLLKYQS-RQQMHKGQ  263 (387)
Q Consensus       192 ~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~-~~~~~~~~  263 (387)
                        +++++...      .+.|..+|..+++..........+..++|+|+++.++++ ..++.|++|+..... ..... ..
T Consensus       147 --~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~-~~  223 (333)
T 2dg1_A          147 --GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF-GA  223 (333)
T ss_dssp             --CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE-EE
T ss_pred             --CEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccc-cc
Confidence              66666553      356677776655544333334567899999999866554 568899999986421 11100 00


Q ss_pred             eeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccC--C---CceeEEEE
Q 035621          264 ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA--G---SISEMVIA  325 (387)
Q Consensus       264 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~---~v~~~~~~  325 (387)
                      .......++ ..+..++++++|+++++...++.|.+||. +++.+..+..+..  +   .+.+++|+
T Consensus       224 ~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~  288 (333)
T 2dg1_A          224 TIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFI  288 (333)
T ss_dssp             EEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred             eEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEEC
Confidence            111111122 46788999999998888878899999998 5777777754322  1   57888885

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.80  E-value=8.3e-17  Score=137.84  Aligned_cols=295  Identities=14%  Similarity=0.127  Sum_probs=200.2

Q ss_pred             cccCCCcEEEeeCC-----CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceee--eccc----cCCCCCeEEEEEc
Q 035621            3 HHLPCNEVILTSSP-----EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAA--SHIS----PTTGSGSVHLYNL   71 (387)
Q Consensus         3 ~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~----~~~~d~~v~vw~~   71 (387)
                      ...|+++.+++...     ++.|.+.|..+++.+.++.....+ . ++++|++....  +.+.    -+..++.|.+||.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            35789988877755     679999999999999999765555 4 99999665332  2110    0124678999999


Q ss_pred             cCCCcccccCCC--------CCeeeEEeccCCCEEEEecC--CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE
Q 035621           72 WSSTPLHNIPVP--------EPVAPLATTADGSYLFTGGL--SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI  141 (387)
Q Consensus        72 ~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  141 (387)
                      .+++.+..+..+        .....++|+|||++++++..  ++.|.++|+.+++.+.++....  . ...+....+.++
T Consensus       117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~  193 (386)
T 3sjl_D          117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFF  193 (386)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEE
T ss_pred             CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeE
Confidence            999988877532        25778999999999998864  6899999999999998885322  1 223333456777


Q ss_pred             EEeCCCcEEEEeCCcccccCCCCCCCCccceEe----eeccCCCeE-EEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--
Q 035621          142 SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK----FVAHNDSVT-AITCCIGSFNSIIISCSMDCTCKFWRLLNGT--  214 (387)
Q Consensus       142 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--  214 (387)
                      +.+.||.+.+.++...           ......    +.....++. ...|.+ .++++++ .+.+|++.+.|+.+..  
T Consensus       194 ~~~~DG~~~~v~~~~~-----------g~v~~~~~~~~~~~~~~~~~~~~~~~-~dG~~~~-vs~~g~V~v~d~~~~~~~  260 (386)
T 3sjl_D          194 MHCRDGSLAKVAFGTE-----------GTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVW-PTYTGKIHQIDLSSGDAK  260 (386)
T ss_dssp             EEETTSCEEEEECCSS-----------SCCEEEECCCCSCTTSCBCSCCEEET-TTTEEEE-EBTTSEEEEEECTTSSCE
T ss_pred             EECCCCCEEEEECCCC-----------CeEEEeecceeccccccccccceeEc-CCCcEEE-EeCCCEEEEEECCCCcce
Confidence            8888999888887321           111111    001111221 124432 2244444 5568999999997654  


Q ss_pred             EEEEEe-----------cCCceeEEEeCCCCCeEEEEcc----------CCcEEEEeccccccccccccceeEeeccccc
Q 035621          215 HLSTVT-----------FPCAIMGLALDPTETDFFAAGS----------DGLIYKGLLKYQSRQQMHKGQELVTLANRHD  273 (387)
Q Consensus       215 ~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  273 (387)
                      ....+.           .+.....++++|+++.+++...          .+.|.++|..+.        +.+..+.-  .
T Consensus       261 v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~--------kv~~~i~v--g  330 (386)
T 3sjl_D          261 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG--------ERLAKFEM--G  330 (386)
T ss_dssp             ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC--------CEEEEEEE--E
T ss_pred             eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC--------eEEEEEEC--C
Confidence            333332           1234455788999999888753          256899999883        33333322  2


Q ss_pred             ccEEEEEEecCCC-EEEEE-eCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          274 GVVVSVMMMNEGK-NLVSA-AEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       274 ~~v~~~~~s~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      ..+.++++++|++ +|++. ..++.|.++|..+++.++++...  +..+.|+++..
T Consensus       331 ~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~--~~p~~l~~s~d  384 (386)
T 3sjl_D          331 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL--GHGPQVITTAD  384 (386)
T ss_dssp             EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC--CSSCCEEEECC
T ss_pred             CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC--CCCceeEECCc
Confidence            3688999999997 66654 55899999999999999999754  56778888765

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=4e-17  Score=141.30  Aligned_cols=262  Identities=9%  Similarity=0.012  Sum_probs=173.1

Q ss_pred             CCcEEEeeC---------CCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccC-CCCCeEEEEEccCCCc
Q 035621            7 CNEVILTSS---------PEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPT-TGSGSVHLYNLWSSTP   76 (387)
Q Consensus         7 ~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~d~~v~vw~~~~~~~   76 (387)
                      ||+.++...         .++.|++||+.+++... +    ..+..++|+|++..++..-... .....|.+|++.+++.
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~   97 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS   97 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce
Confidence            777776642         25779999998877543 3    4578899999775443210000 1233588888888776


Q ss_pred             ccccCCCCCeeeEEeccCCCEEEEecCC---------------------------CcEEEEeCCCCceeEEccCCCCCeE
Q 035621           77 LHNIPVPEPVAPLATTADGSYLFTGGLS---------------------------GNVYAISVPKGDILRSFSAHDKPVS  129 (387)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------g~i~i~d~~~~~~~~~~~~~~~~v~  129 (387)
                      ......+. +..++|+|||+.|+.++.+                           ..|.+||+.+++.+..+.. . .+.
T Consensus        98 ~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~  174 (347)
T 2gop_A           98 KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFS  174 (347)
T ss_dssp             EEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTC
T ss_pred             EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-Ccc
Confidence            55555555 9999999999998887632                           5799999988876455544 3 788


Q ss_pred             EEEEcCCCCEEEEEeCCC-------cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC
Q 035621          130 CLKISPDGSLLISGGDDG-------VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD  202 (387)
Q Consensus       130 ~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  202 (387)
                      .++|+|++ +++++..++       ...+|.+.             ......+..+ ..+..+  +|++  +.|+.++.+
T Consensus       175 ~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-------------~~~~~~l~~~-~~~~~~--spdg--~~l~~~~~~  235 (347)
T 2gop_A          175 SGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-------------DGKEEKMFEK-VSFYAV--DSDG--ERILLYGKP  235 (347)
T ss_dssp             EEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-------------TTEEEEEEEE-ESEEEE--EECS--SCEEEEECC
T ss_pred             cccCCCCe-EEEEEecccccccccccccEEEeC-------------CCceEEeccC-cceeeE--CCCC--CEEEEEEcc
Confidence            99999999 887776542       44566551             1122333334 445444  7775  777766643


Q ss_pred             --------CcEEEEeCCCCcEEEEEe-cCCceeE-EEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccc
Q 035621          203 --------CTCKFWRLLNGTHLSTVT-FPCAIMG-LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH  272 (387)
Q Consensus       203 --------~~i~iwd~~~~~~~~~~~-~~~~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  272 (387)
                              ..|.+||  +++...... +...+.. +.|+ ++ .+++++.++.+++| +..+        .. ..+. .+
T Consensus       236 ~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g--------~~-~~~~-~~  300 (347)
T 2gop_A          236 EKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG--------EI-KPIA-KG  300 (347)
T ss_dssp             SSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS--------SE-EEEE-CS
T ss_pred             ccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC--------ce-EEEe-cC
Confidence                    3688888  555433222 3456775 8999 88 88888999999999 8731        11 1222 34


Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcE-EEEECCCccEEEEeecc
Q 035621          273 DGVVVSVMMMNEGKNLVSAAEDGSV-YIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       273 ~~~v~~~~~s~~~~~l~s~~~dg~i-~iwd~~~~~~~~~~~~~  314 (387)
                      ...|.+++|+|  .++++++.++.. .+|.+. ++ ...+..+
T Consensus       301 ~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~  339 (347)
T 2gop_A          301 RHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDY  339 (347)
T ss_dssp             SSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCT
T ss_pred             CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccc
Confidence            67899999999  677777777665 777776 55 3445544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.79  E-value=2.4e-17  Score=155.29  Aligned_cols=267  Identities=13%  Similarity=0.084  Sum_probs=175.6

Q ss_pred             EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCee---------eEEec--cCCCE-E
Q 035621           32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVA---------PLATT--ADGSY-L   98 (387)
Q Consensus        32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~---------~~~~~--~~~~~-l   98 (387)
                      ..+.+|...+..++++++..+....  ..+.++...||....+.....+. +...+.         ...|+  |||+. |
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l   94 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAP--RPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL   94 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEE--ETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEec--CcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence            3456788889999999875544431  01567889999864444333333 444555         56565  99998 7


Q ss_pred             EEecC-CCcEEEEeCC--C-CceeEEccC-----CCCCeEEEEEcCCCCEEEEEeCC----------CcEEEEeCCcccc
Q 035621           99 FTGGL-SGNVYAISVP--K-GDILRSFSA-----HDKPVSCLKISPDGSLLISGGDD----------GVIATVPIFQLVD  159 (387)
Q Consensus        99 ~~~~~-dg~i~i~d~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~  159 (387)
                      +.++. +..|.++++.  . ++ ...+..     |...+..++|+|||+.|++++.+          ..|++||+.....
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  173 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA  173 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred             EEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence            76553 5678888875  3 43 445554     56778999999999999998877          5799999832000


Q ss_pred             cCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEeCC--------CcEEEEeCC-CC---cEEEEEe-cCCce
Q 035621          160 EHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCSMD--------CTCKFWRLL-NG---THLSTVT-FPCAI  225 (387)
Q Consensus       160 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~-~~---~~~~~~~-~~~~v  225 (387)
                             ........+. .+...+..++|+|++  ++|+.++.+        ..|++||+. ++   +...... +...+
T Consensus       174 -------~~~~~~~~l~~~~~~~~~~~~~SpDG--~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~  244 (662)
T 3azo_A          174 -------ADRSAVRELSDDAHRFVTGPRLSPDG--RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAI  244 (662)
T ss_dssp             -------TCGGGSEESSCSCSSEECCCEECTTS--SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCE
T ss_pred             -------ccCCceeEEEecCCCcccCceECCCC--CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceE
Confidence                   0002234444 555677788999885  888877754        379999998 56   3333333 35789


Q ss_pred             eEEEeCCCCCeEEEEccCC--cEEEEeccccccccccccceeEeeccccccc--------EEEEEEecCCCEEEEEeCCC
Q 035621          226 MGLALDPTETDFFAAGSDG--LIYKGLLKYQSRQQMHKGQELVTLANRHDGV--------VVSVMMMNEGKNLVSAAEDG  295 (387)
Q Consensus       226 ~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~s~~~dg  295 (387)
                      ..++|+|||++++++..++  .|++||...+...         .+...+...        +..++|+|++++++++.. +
T Consensus       245 ~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~---------~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~  314 (662)
T 3azo_A          245 AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT---------QLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G  314 (662)
T ss_dssp             EEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE---------ESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred             cceEECCCCeEEEEECCCCCeEEEEEECCCCcee---------ecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence            9999999999888887788  5555555442211         111112111        567899999999999988 9


Q ss_pred             cEEEE--ECCCccEEEEeecccCCCceeE
Q 035621          296 SVYIW--EIEKRQVVMVLKNELAGSISEM  322 (387)
Q Consensus       296 ~i~iw--d~~~~~~~~~~~~~~~~~v~~~  322 (387)
                      .++||  |+.+++ +..+..+ .+.+..+
T Consensus       315 ~~~l~~~d~~~~~-~~~l~~~-~~~~~~~  341 (662)
T 3azo_A          315 AAVLGILDPESGE-LVDAAGP-WTEWAAT  341 (662)
T ss_dssp             SCEEEEEETTTTE-EEECCSS-CCEEEEE
T ss_pred             ccEEEEEECCCCc-EEEecCC-CCeEEEE
Confidence            99999  655555 5566554 3344433

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.79  E-value=4.7e-17  Score=143.40  Aligned_cols=260  Identities=10%  Similarity=-0.013  Sum_probs=172.5

Q ss_pred             EEEeCCCCceeEeccCCCCC-----ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCe-eeEEeccC
Q 035621           21 TAYNPSSGAILAHFSGSRSP-----RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPV-APLATTAD   94 (387)
Q Consensus        21 ~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v-~~~~~~~~   94 (387)
                      ...|..+++.+..+..+...     +..++|+|++..++.. .....+..+.+||+.+++........... ..+.|+||
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~-~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd   91 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFA-GDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD   91 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEE-ECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEE-EecCCCceEEEEECCCCcEEEeecCCCCccccceECCC
Confidence            35588888888888765444     7888999976543321 01123457889999887765544444443 34889999


Q ss_pred             CCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEE-------------------EEEcCCCCEEEEE-----eCCCcEE
Q 035621           95 GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSC-------------------LKISPDGSLLISG-----GDDGVIA  150 (387)
Q Consensus        95 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~  150 (387)
                      |++|+.++.++.|++||+.+++.......+......                   +.|+|+++.++..     ..+..|.
T Consensus        92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~  171 (396)
T 3c5m_A           92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLI  171 (396)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEE
T ss_pred             CCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEE
Confidence            999999988889999999888766555544432222                   3457777766554     3566789


Q ss_pred             EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee-CCCCceEEEEeCC------CcEEEEeCCCCcEEEEEec--
Q 035621          151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI-GSFNSIIISCSMD------CTCKFWRLLNGTHLSTVTF--  221 (387)
Q Consensus       151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~--  221 (387)
                      +||+.            ... ...+..+...+..+.|+| ++  ..|+..+.+      ..|.+||+..++.......  
T Consensus       172 ~~d~~------------~g~-~~~~~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~  236 (396)
T 3c5m_A          172 KVDIE------------TGE-LEVIHQDTAWLGHPIYRPFDD--STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE  236 (396)
T ss_dssp             EEETT------------TCC-EEEEEEESSCEEEEEEETTEE--EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT
T ss_pred             EEECC------------CCc-EEeeccCCcccccceECCCCC--CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC
Confidence            99882            222 233345677889999998 53  555555443      4688999876653332222  


Q ss_pred             CCceeEEEeCCCCCeEEEEccC-----CcEEEEeccccccccccccceeEeecccccccEEEEEEec-CCCEEEEEe---
Q 035621          222 PCAIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN-EGKNLVSAA---  292 (387)
Q Consensus       222 ~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~---  292 (387)
                      ...+..++|+|+|+.|+.++.+     +.|++||+.++....      +.. .   . ... +.|+| +|+++++++   
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~------l~~-~---~-~~~-~~~s~~dg~~l~~~~~~~  304 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE------VMV-M---P-PCS-HLMSNFDGSLMVGDGCDA  304 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE------EEE-C---C-SEE-EEEECSSSSEEEEEECCC
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE------eee-C---C-CCC-CCccCCCCceEEEecCCc
Confidence            2357889999999988777553     349999987643211      111 1   1 122 88999 999888754   


Q ss_pred             -------------CCCcEEEEECCCccEE
Q 035621          293 -------------EDGSVYIWEIEKRQVV  308 (387)
Q Consensus       293 -------------~dg~i~iwd~~~~~~~  308 (387)
                                   .++.|++||+.+++..
T Consensus       305 p~~~~~~~~~~~~~~~~i~~~d~~~~~~~  333 (396)
T 3c5m_A          305 PVDVADADSYNIENDPFLYVLNTKAKSAQ  333 (396)
T ss_dssp             ----------CCCCCCEEEEEETTTTBCC
T ss_pred             ceeeccccccccCCCCcEEEEecccCceE
Confidence                         3478999999988754

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.78  E-value=1e-15  Score=145.11  Aligned_cols=286  Identities=11%  Similarity=0.028  Sum_probs=182.2

Q ss_pred             ccCCCcEEEeeCCC-----CcEEEEeCCCCceeEec------cCCCCCceeEEEcCccceeeeccc-cCCCCCeEEEEEc
Q 035621            4 HLPCNEVILTSSPE-----GPITAYNPSSGAILAHF------SGSRSPRRGLTFAGKPFIAASHIS-PTTGSGSVHLYNL   71 (387)
Q Consensus         4 ~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~-~~~~d~~v~vw~~   71 (387)
                      .+|+|++++....+     +.+++.+...++....+      .+|...+..++|+|++..++.... .|+....|++||+
T Consensus        79 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~  158 (710)
T 2xdw_A           79 HFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV  158 (710)
T ss_dssp             CEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET
T ss_pred             CEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence            35788877754322     24555555445433222      234345888999998765553222 1222348999999


Q ss_pred             cCCCcccccCCCCCeeeEEeccCCCEEEEecCCCc----------------EEEEeCCCCce----eEEccCCCCCeEEE
Q 035621           72 WSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGN----------------VYAISVPKGDI----LRSFSAHDKPVSCL  131 (387)
Q Consensus        72 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~----~~~~~~~~~~v~~~  131 (387)
                      .+++..........+..++|+|||+.|+.++.++.                |++|++.+++.    +.....|...+..+
T Consensus       159 ~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~  238 (710)
T 2xdw_A          159 DGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGA  238 (710)
T ss_dssp             TTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             CCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEE
Confidence            99877653322334678999999999999887765                99999988762    22223355668899


Q ss_pred             EEcCCCCEEEEEeC-----CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-C---
Q 035621          132 KISPDGSLLISGGD-----DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-D---  202 (387)
Q Consensus       132 ~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d---  202 (387)
                      .|+|||++|+.++.     +..|++||+......    . ........+..+...+.. .|++++  ..|+..+. +   
T Consensus       239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~----~-~~~~~~~~l~~~~~~~~~-~~s~dg--~~l~~~s~~~~~~  310 (710)
T 2xdw_A          239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG----I-TGILKWVKLIDNFEGEYD-YVTNEG--TVFTFKTNRHSPN  310 (710)
T ss_dssp             EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS----S-CSSCCCEEEECSSSSCEE-EEEEET--TEEEEEECTTCTT
T ss_pred             EEcCCCCEEEEEEEccCCCccEEEEEECcccccc----c-CCccceEEeeCCCCcEEE-EEeccC--CEEEEEECCCCCC
Confidence            99999999887765     568999998320000    0 001134555566666554 467765  55554443 2   


Q ss_pred             CcEEEEeCCCCcE--EEEE-ecCC--ceeEEEeCCCCCeEEEEccCCcE--EEEeccccccccccccceeEeeccccccc
Q 035621          203 CTCKFWRLLNGTH--LSTV-TFPC--AIMGLALDPTETDFFAAGSDGLI--YKGLLKYQSRQQMHKGQELVTLANRHDGV  275 (387)
Q Consensus       203 ~~i~iwd~~~~~~--~~~~-~~~~--~v~~~~~~~~~~~l~~~~~dg~i--~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  275 (387)
                      +.|.+||+.++..  ...+ .+..  .+..++|++++.++++...++..  ++|++..+        ..... +..+.+.
T Consensus       311 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g--------~~~~~-l~~~~~~  381 (710)
T 2xdw_A          311 YRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG--------ALLKI-FPLEVGS  381 (710)
T ss_dssp             CEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC--------CEEEE-ECCCSSE
T ss_pred             CEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC--------CEEEe-cCCCCce
Confidence            3699999987742  2333 3333  67889999877788888888854  55555332        11222 2245677


Q ss_pred             EEEEEEecCCCEEEEE----eCCCcEEEEECCCcc
Q 035621          276 VVSVMMMNEGKNLVSA----AEDGSVYIWEIEKRQ  306 (387)
Q Consensus       276 v~~~~~s~~~~~l~s~----~~dg~i~iwd~~~~~  306 (387)
                      +..+.++|+++.++..    ...+.|+.||+.+++
T Consensus       382 v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          382 VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8899999998766532    245789999999887

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.77  E-value=1.3e-14  Score=122.56  Aligned_cols=269  Identities=10%  Similarity=0.040  Sum_probs=183.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeE-eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILA-HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.+...    ...++.|..|+.. ++. ..+
T Consensus        20 i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~----~~~~~~i~~~~~~-g~~-~~~   92 (299)
T 2z2n_A           20 ITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFT----ENAANKIGRITKK-GII-KEY   92 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEE----ETTTTEEEEECTT-SCE-EEE
T ss_pred             eEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEe----CCCCCeEEEECCC-CcE-EEE
Confidence            4678899988877767899999987 55433 22334566899999886544332    4457889999875 332 222


Q ss_pred             C---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE-ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621           81 P---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS-FSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        81 ~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      .   ....+..+++.++|.+.++...++.|..||. +++.... ...+...+..+++.+++++.++...++.|..||. .
T Consensus        93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~  170 (299)
T 2z2n_A           93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S  170 (299)
T ss_dssp             ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred             eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C
Confidence            2   3356889999999988887777889999998 5554432 2334567899999999988777777788999987 1


Q ss_pred             ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCC
Q 035621          157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPT  233 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~  233 (387)
                                 ..........+...+..+++.++  +.++++...++.|..||. +++.. .+..   ...+.+++++++
T Consensus       171 -----------g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~  235 (299)
T 2z2n_A          171 -----------GDITEFKIPTPASGPVGITKGND--DALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAITAGAG  235 (299)
T ss_dssp             -----------CCEEEEECSSTTCCEEEEEECTT--SSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECST
T ss_pred             -----------CcEEEeeCCCCCCcceeEEECCC--CCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCceeEEECCC
Confidence                       11111112233456778888776  467776666889999999 66643 3432   367899999999


Q ss_pred             CCeEEEEccCCcEEEEeccccccccccccceeEee-cccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621          234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL-ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  306 (387)
                      |+.+++...++.|..||... .         .... ...+...+.++++ +++.++++.. .+.|..++.++++
T Consensus       236 g~l~v~~~~~~~i~~~d~~g-~---------~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          236 IDLWFTEWGANKIGRLTSNN-I---------IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             TCEEEEETTTTEEEEEETTT-E---------EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             CCEEEeccCCceEEEECCCC-c---------eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence            98666666788999999732 1         1111 1234567899999 8888777655 5677778877654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.77  E-value=5.4e-16  Score=129.02  Aligned_cols=244  Identities=16%  Similarity=0.174  Sum_probs=178.3

Q ss_pred             cccCCCCCeEEEEEccCCCcccccCCCC--CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCC-CCeEEEEE
Q 035621           57 ISPTTGSGSVHLYNLWSSTPLHNIPVPE--PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHD-KPVSCLKI  133 (387)
Q Consensus        57 ~~~~~~d~~v~vw~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~  133 (387)
                      +++++.++.|.+||.++++.+..+....  .+.++.++|+|+++++  .++.|..||. +++.+..+..+. ..+.++.+
T Consensus         8 lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~   84 (276)
T 3no2_A            8 LVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARI   84 (276)
T ss_dssp             EEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEE
T ss_pred             EEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEE
Confidence            3447899999999999999998887654  6899999999998883  4678999998 899999888653 57889999


Q ss_pred             cCCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeec------cCCCeEEEEEeeCCCCceEEEEeCCCcEE
Q 035621          134 SPDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA------HNDSVTAITCCIGSFNSIIISCSMDCTCK  206 (387)
Q Consensus       134 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~s~~~d~~i~  206 (387)
                      .|+|+++++.+. ++.+..+|.             .++.+..+..      +......+++.++  ++++++...++.|.
T Consensus        85 ~~dG~~lv~~~~~~~~v~~vd~-------------~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~--G~~lv~~~~~~~v~  149 (276)
T 3no2_A           85 LPDGNALVAWCGHPSTILEVNM-------------KGEVLSKTEFETGIERPHAQFRQINKNKK--GNYLVPLFATSEVR  149 (276)
T ss_dssp             CTTSCEEEEEESTTEEEEEECT-------------TSCEEEEEEECCSCSSGGGSCSCCEECTT--SCEEEEETTTTEEE
T ss_pred             CCCCCEEEEecCCCCEEEEEeC-------------CCCEEEEEeccCCCCcccccccCceECCC--CCEEEEecCCCEEE
Confidence            999999999887 777777765             3333333321      1123334444444  58999999999999


Q ss_pred             EEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC
Q 035621          207 FWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK  286 (387)
Q Consensus       207 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  286 (387)
                      .||.. ++.+.++..+..+.++...++|+.++++..++.|..+|..++..........+   .......+..++..++|.
T Consensus       150 ~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~---~~~~l~~~~~~~~~~~G~  225 (276)
T 3no2_A          150 EIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI---EGVQLFFVAQLFPLQNGG  225 (276)
T ss_dssp             EECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS---BSCCCSEEEEEEECTTSC
T ss_pred             EECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC---CCccccccccceEcCCCC
Confidence            99988 99999998777788889999999999988888999999887543222111000   001123478899999999


Q ss_pred             EEEEEeCC--------CcEEEEEC-CCccEEEEeecccC-CCceeE
Q 035621          287 NLVSAAED--------GSVYIWEI-EKRQVVMVLKNELA-GSISEM  322 (387)
Q Consensus       287 ~l~s~~~d--------g~i~iwd~-~~~~~~~~~~~~~~-~~v~~~  322 (387)
                      .+++....        +..+++++ .+++.+.++..... +.++.+
T Consensus       226 i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~  271 (276)
T 3no2_A          226 LYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI  271 (276)
T ss_dssp             EEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred             EEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence            88887421        24466666 67899988875432 344443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.76  E-value=3.8e-16  Score=132.00  Aligned_cols=227  Identities=15%  Similarity=0.124  Sum_probs=162.8

Q ss_pred             ccccCCCc-EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNE-VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++|+|+|+ +++++..++.|..||..++  ...+..+...+.++++++++.+...    ...++.|.+||..+++.....
T Consensus        33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~----~~~~~~i~~~d~~~g~~~~~~  106 (296)
T 3e5z_A           33 PVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIAC----SHGLRRLERQREPGGEWESIA  106 (296)
T ss_dssp             EEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEE----ETTTTEEEEECSTTCCEEEEE
T ss_pred             CeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEE----ecCCCeEEEEcCCCCcEEEEe
Confidence            46899998 7888888999999999877  5666667778999999997654432    455689999999887654332


Q ss_pred             CC-----CCCeeeEEeccCCCEEEE----ec-------------CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC
Q 035621           81 PV-----PEPVAPLATTADGSYLFT----GG-------------LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS  138 (387)
Q Consensus        81 ~~-----~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  138 (387)
                      ..     ...+..++++|+|+++++    |+             ..+.|..++.. ++. ..+..+......++|+|+++
T Consensus       107 ~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~  184 (296)
T 3e5z_A          107 DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGN  184 (296)
T ss_dssp             CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSC
T ss_pred             eccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCC
Confidence            21     235678999999998887    33             13467777655 443 34445667789999999999


Q ss_pred             EEEEEeCCCcEEEEeCCcccccCCCCCCCCccc---eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE
Q 035621          139 LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLM---LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH  215 (387)
Q Consensus       139 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  215 (387)
                      .+++.+.++.|.+|++..           .+..   ...+..+...+..+++.+++  +++++.  ++.|.+||.. ++.
T Consensus       185 ~lv~~~~~~~i~~~~~~~-----------~g~~~~~~~~~~~~~~~p~~i~~d~~G--~l~v~~--~~~v~~~~~~-g~~  248 (296)
T 3e5z_A          185 LLVSDTGDNATHRYCLNA-----------RGETEYQGVHFTVEPGKTDGLRVDAGG--LIWASA--GDGVHVLTPD-GDE  248 (296)
T ss_dssp             EEEEETTTTEEEEEEECS-----------SSCEEEEEEEECCSSSCCCSEEEBTTS--CEEEEE--TTEEEEECTT-SCE
T ss_pred             EEEEeCCCCeEEEEEECC-----------CCcCcCCCeEeeCCCCCCCeEEECCCC--CEEEEc--CCeEEEECCC-CCE
Confidence            887777889999999831           1111   12222344556678887774  666555  7899999986 778


Q ss_pred             EEEEecCCceeEEEe-CCCCCeEEEEccCCcEEEEeccc
Q 035621          216 LSTVTFPCAIMGLAL-DPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       216 ~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                      +..+..+..+.+++| .|+++.|++++.+ .+..++..+
T Consensus       249 ~~~~~~~~~~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~  286 (296)
T 3e5z_A          249 LGRVLTPQTTSNLCFGGPEGRTLYMTVST-EFWSIETNV  286 (296)
T ss_dssp             EEEEECSSCCCEEEEESTTSCEEEEEETT-EEEEEECSC
T ss_pred             EEEEECCCCceeEEEECCCCCEEEEEcCC-eEEEEEccc
Confidence            888875544999999 6899999998876 344445544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=1.3e-15  Score=126.89  Aligned_cols=233  Identities=9%  Similarity=-0.008  Sum_probs=160.5

Q ss_pred             ccccCCCcEEE-eeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNEVIL-TSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++++|+|++++ +...++.|.+||..++........+...+.++++++++.+...    .. ++.|.+||....... .+
T Consensus        29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~----~~-~~~i~~~d~~~~~~~-~~  102 (270)
T 1rwi_B           29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVT----DF-NNRVVTLAAGSNNQT-VL  102 (270)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEE----ET-TTEEEEECTTCSCCE-EC
T ss_pred             eEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEE----cC-CCEEEEEeCCCceEe-ee
Confidence            46789999777 5577889999998665543322334456889999986543322    33 789999998655433 23


Q ss_pred             C--CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621           81 P--VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        81 ~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                      .  ....+..+++.++|+++++...++.|.+|+..+.............+.+++++++++++++...++.|.+||...  
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~--  180 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES--  180 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT--
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC--
Confidence            2  225688999999999777777788999998665544333323334678999999999777777788999999732  


Q ss_pred             ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeE
Q 035621          159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDF  237 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l  237 (387)
                                .........+...+..+++.+++  .++++...++.|.+||........... ....+.+++++++|+.+
T Consensus       181 ----------~~~~~~~~~~~~~p~~i~~d~~g--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          181 ----------NNQVVLPFTDITAPWGIAVDEAG--TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY  248 (270)
T ss_dssp             ----------CCEEECCCSSCCSEEEEEECTTC--CEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEE
T ss_pred             ----------CceEeecccCCCCceEEEECCCC--CEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEE
Confidence                      22222122233567788887764  777777778899999987654332211 23568999999999988


Q ss_pred             EEEccCCcEEEEecccc
Q 035621          238 FAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       238 ~~~~~dg~i~i~d~~~~  254 (387)
                      ++...++.|+++++...
T Consensus       249 v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          249 VADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EEEGGGTEEEEECCCGG
T ss_pred             EEECCCCEEEEEcCCCc
Confidence            88888999999998763

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.75  E-value=1.1e-15  Score=127.21  Aligned_cols=211  Identities=11%  Similarity=0.082  Sum_probs=165.9

Q ss_pred             CCCcEEEeeCCCCcEEEEeCCCCceeEeccCCC-CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-
Q 035621            6 PCNEVILTSSPEGPITAYNPSSGAILAHFSGSR-SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-   83 (387)
Q Consensus         6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-   83 (387)
                      ..+++|++++.++.|++||.++|+.+.++..+. ..+.++.+.|++.+..      +.++.|..||. +++.+..+..+ 
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv------s~~~~V~~~d~-~G~~~W~~~~~~   75 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF------SYSKGAKMITR-DGRELWNIAAPA   75 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE------ECBSEEEEECT-TSCEEEEEECCT
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE------eCCCCEEEECC-CCCEEEEEcCCC
Confidence            346799999999999999999999999998776 4689999999776554      24788999998 88888888754 


Q ss_pred             -CCeeeEEeccCCCEEEEecC-CCcEEEEeCCCCceeEEccC------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621           84 -EPVAPLATTADGSYLFTGGL-SGNVYAISVPKGDILRSFSA------HDKPVSCLKISPDGSLLISGGDDGVIATVPIF  155 (387)
Q Consensus        84 -~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  155 (387)
                       ..+.++.+.++|+++++.+. ++.+..+|. +++.+..+..      +......+++.++|+++++...++.|..||. 
T Consensus        76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~-  153 (276)
T 3no2_A           76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP-  153 (276)
T ss_dssp             TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT-
T ss_pred             CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC-
Confidence             46888999999999999877 778888885 7777766542      1124556778999999999999999999998 


Q ss_pred             cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC-------CceeEE
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-------CAIMGL  228 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~v~~~  228 (387)
                                 . ++.+.++.... ...++...++  ++++++++.++.|..+|..+++.+.++...       ..+..+
T Consensus       154 -----------~-G~~~w~~~~~~-~~~~~~~~~~--g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~  218 (276)
T 3no2_A          154 -----------N-GQLLNSVKLSG-TPFSSAFLDN--GDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQL  218 (276)
T ss_dssp             -----------T-SCEEEEEECSS-CCCEEEECTT--SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEE
T ss_pred             -----------C-CCEEEEEECCC-CccceeEcCC--CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccc
Confidence                       3 66666665543 3445555554  588998888889999999999999998632       126778


Q ss_pred             EeCCCCCeEEEE
Q 035621          229 ALDPTETDFFAA  240 (387)
Q Consensus       229 ~~~~~~~~l~~~  240 (387)
                      +..++|..+++.
T Consensus       219 ~~~~~G~i~v~~  230 (276)
T 3no2_A          219 FPLQNGGLYICN  230 (276)
T ss_dssp             EECTTSCEEEEE
T ss_pred             eEcCCCCEEEEe
Confidence            888888777766

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=1.7e-15  Score=126.08  Aligned_cols=241  Identities=9%  Similarity=0.008  Sum_probs=165.2

Q ss_pred             CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc-cCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee
Q 035621           40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL  118 (387)
Q Consensus        40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  118 (387)
                      ...++++++++.+..   .+...++.|.+|+..+...... ......+.++++.++|+++++.. ++.|.+||...... 
T Consensus        25 ~p~~i~~~~~g~l~v---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYV---TSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-   99 (270)
T ss_dssp             CEEEEEECTTCCEEE---EECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-
T ss_pred             CccceEECCCCCEEE---EccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-
Confidence            577899988654332   0246788999998765543222 12235688999999998666655 88999999866543 


Q ss_pred             EEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE
Q 035621          119 RSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII  197 (387)
Q Consensus       119 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  197 (387)
                      ..+. .....+..++++|+++++++...++.|.+|+...            .............+..+++.+++  ++++
T Consensus       100 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~------------~~~~~~~~~~~~~p~~i~~~~~g--~l~v  165 (270)
T 1rwi_B          100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS------------KTQTVLPFTGLNDPDGVAVDNSG--NVYV  165 (270)
T ss_dssp             EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC------------CSCEECCCCSCCSCCCEEECTTC--CEEE
T ss_pred             eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC------------ceeEeeccccCCCceeEEEeCCC--CEEE
Confidence            3332 2336789999999999777777788999997621            11111112223356778888764  6777


Q ss_pred             EEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621          198 SCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV  276 (387)
Q Consensus       198 s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  276 (387)
                      +...++.|.+||........... ....+..++++++|..+++...++.|.+|+......         ......+...+
T Consensus       166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~p  236 (270)
T 1rwi_B          166 TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS---------TVLPFTGLNTP  236 (270)
T ss_dssp             EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC---------EECCCCSCSCE
T ss_pred             EECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc---------eeeccCCCCCc
Confidence            77778899999988765443322 226788999999997777777789999999865221         11111233568


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621          277 VSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV  308 (387)
Q Consensus       277 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  308 (387)
                      .+++++++|+++++...++.|+++++...+.+
T Consensus       237 ~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          237 LAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred             eeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence            99999999998888889999999998877654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.75  E-value=3.6e-14  Score=123.16  Aligned_cols=280  Identities=13%  Similarity=0.070  Sum_probs=183.9

Q ss_pred             cCCCcEEEeeCC--CC---cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeee--cc----ccCCCCCeEEEEEccC
Q 035621            5 LPCNEVILTSSP--EG---PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAAS--HI----SPTTGSGSVHLYNLWS   73 (387)
Q Consensus         5 s~~~~~l~~~~~--dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~----~~~~~d~~v~vw~~~~   73 (387)
                      .|+++++++...  .+   .|.++|..+++.+.++.....+  .++++|++..+..  .+    .-+..++.|.+||..+
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            477877776653  23   7899999999998888755544  9999997644322  10    0112468899999998


Q ss_pred             CCcccccCCC--------CCeeeEEeccCCCEEEEecC--CCcEEEEeCCCCceeEE-ccCCCCCeEEEEEcCCC-CEEE
Q 035621           74 STPLHNIPVP--------EPVAPLATTADGSYLFTGGL--SGNVYAISVPKGDILRS-FSAHDKPVSCLKISPDG-SLLI  141 (387)
Q Consensus        74 ~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~  141 (387)
                      .+.+..+...        .....++|+|||++|+++..  ++.|.++| .+++.+.. +... .   ++.+.|++ +.++
T Consensus       107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~  181 (373)
T 2mad_H          107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFY  181 (373)
T ss_pred             CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEE
Confidence            8877766543        23568999999999998864  47899999 99998877 6532 2   24455554 4566


Q ss_pred             EEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe-EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--EEEE
Q 035621          142 SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV-TAITCCIGSFNSIIISCSMDCTCKFWRLLNGT--HLST  218 (387)
Q Consensus       142 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~  218 (387)
                      +.+.||.+.++|. .......       ...........++ ....+.++. +.+++. +..+.+.+.|+....  .+..
T Consensus       182 ~~~~dg~~~~vd~-~g~~~~~-------~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~-~~~~~v~vid~~~~~~~v~~~  251 (373)
T 2mad_H          182 LLCAQGGLAKTDH-AGGAAGA-------GLVGAMLTAAQNLLTQPAQANKS-GRIVWP-VYSGKILQADISAAGATNKAP  251 (373)
T ss_pred             EEcCCCCEEEEEC-CCcEEEE-------EeccccccCCcceeecceeEecC-CEEEEE-cCCceEEEEeccCCcceEeee
Confidence            7778999999987 3211100       0000000111221 223445553 233443 367899999987553  2233


Q ss_pred             Eec-----------CCceeEEEeCCCCCeEEEEcc----------CCcEEEEeccccccccccccceeEeecccccccEE
Q 035621          219 VTF-----------PCAIMGLALDPTETDFFAAGS----------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV  277 (387)
Q Consensus       219 ~~~-----------~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  277 (387)
                      +..           +.....+.++|+++.++++..          ++.|.++|..+.        .....+.  -.....
T Consensus       252 ~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--------~vv~~i~--~g~~p~  321 (373)
T 2mad_H          252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--------QTSSQIS--LGHDVD  321 (373)
T ss_pred             eeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC--------EEEEEEE--CCCCcC
Confidence            321           233445889999998888653          357999998873        2223332  233588


Q ss_pred             EEEEecCCC-EEEEEe-CCCcEEEEECCCccEEEEe
Q 035621          278 SVMMMNEGK-NLVSAA-EDGSVYIWEIEKRQVVMVL  311 (387)
Q Consensus       278 ~~~~s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~  311 (387)
                      +++|+|||+ +++++. .++.|.+||+.+++.+..+
T Consensus       322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             eEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            999999999 777776 5899999999999999884

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.74  E-value=3.3e-15  Score=126.16  Aligned_cols=244  Identities=13%  Similarity=0.051  Sum_probs=167.4

Q ss_pred             ceeEeccCCCCCceeEEEcCccc-eeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCc
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPF-IAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGN  106 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~  106 (387)
                      ..+..+..+.....+++|+|++. +..    ++..++.|..|+..++  ...+. ....+.+++++++|+++++...++.
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~----~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~   91 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIF----SDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR   91 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEE----EEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEE----EeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCe
Confidence            33444555556678999999654 222    2567899999999877  33333 4567899999999998887777789


Q ss_pred             EEEEeCCCCceeEEccCC----CCCeEEEEEcCCCCEEEE----Ee-------------CCCcEEEEeCCcccccCCCCC
Q 035621          107 VYAISVPKGDILRSFSAH----DKPVSCLKISPDGSLLIS----GG-------------DDGVIATVPIFQLVDEHTDDK  165 (387)
Q Consensus       107 i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~iwd~~~~~~~~~~~~  165 (387)
                      |.+||..+++........    ...+..++++|+|+++++    ++             ..+.|..++.           
T Consensus        92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~-----------  160 (296)
T 3e5z_A           92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP-----------  160 (296)
T ss_dssp             EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT-----------
T ss_pred             EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC-----------
Confidence            999999888765433211    234678999999998887    33             1234555544           


Q ss_pred             CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-CCcE---EEEEe-cCCceeEEEeCCCCCeEEEE
Q 035621          166 NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL-NGTH---LSTVT-FPCAIMGLALDPTETDFFAA  240 (387)
Q Consensus       166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~---~~~~~-~~~~v~~~~~~~~~~~l~~~  240 (387)
                        . .....+..+......++|+|++  +.+++.+.++.|.+||+. +++.   ...+. ....+..++++++|+++++.
T Consensus       161 --~-g~~~~~~~~~~~~~gi~~s~dg--~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          161 --D-GTLSAPIRDRVKPNGLAFLPSG--NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             --T-SCEEEEECCCSSEEEEEECTTS--CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred             --C-CCEEEeecCCCCCccEEECCCC--CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence              1 2234445566677899998885  667777788999999997 5554   23332 23456789999999866665


Q ss_pred             ccCCcEEEEeccccccccccccceeEeecccccccEEEEEE-ecCCCEEEEEeCCCcEEEEECCCccEE
Q 035621          241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM-MNEGKNLVSAAEDGSVYIWEIEKRQVV  308 (387)
Q Consensus       241 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg~i~iwd~~~~~~~  308 (387)
                        ++.|.+|+...         ..+.. ...+.. +++++| +|+++.|++++.+ .+.-++.++.++.
T Consensus       236 --~~~v~~~~~~g---------~~~~~-~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~  290 (296)
T 3e5z_A          236 --GDGVHVLTPDG---------DELGR-VLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE  290 (296)
T ss_dssp             --TTEEEEECTTS---------CEEEE-EECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred             --CCeEEEECCCC---------CEEEE-EECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence              78899999753         12222 223445 889999 5899988888876 4556676666554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.74  E-value=6.6e-16  Score=133.59  Aligned_cols=223  Identities=12%  Similarity=0.097  Sum_probs=150.8

Q ss_pred             CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC---C--cEEEEeCCCCceeEEccCCCCCeEEEEEcCC
Q 035621           62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS---G--NVYAISVPKGDILRSFSAHDKPVSCLKISPD  136 (387)
Q Consensus        62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  136 (387)
                      .++.|.+||+.+++....    ..+..++|+|||++|+..+.+   +  .|.+|++.+++....... .. +..++|+|+
T Consensus        41 ~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspd  114 (347)
T 2gop_A           41 YENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNED  114 (347)
T ss_dssp             EEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTT
T ss_pred             ccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCC
Confidence            367899999988765333    568889999999999887643   2  488889888776554443 33 999999999


Q ss_pred             CCEEEEEeCC---------------------------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEee
Q 035621          137 GSLLISGGDD---------------------------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCI  189 (387)
Q Consensus       137 ~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  189 (387)
                      ++.|+.++.+                           ..|.+||+            ..+..+..+.. . .+..+.|+|
T Consensus       115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~------------~~~~~~~~l~~-~-~~~~~~~sp  180 (347)
T 2gop_A          115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT------------ESEEVIEEFEK-P-RFSSGIWHR  180 (347)
T ss_dssp             SSEEEEEEECCCC---------CCCC---------CEEEEEEEET------------TTTEEEEEEEE-E-TTCEEEEET
T ss_pred             CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC------------CCCeEEeeecC-C-CcccccCCC
Confidence            9988887642                           46888888            33333233433 3 778889998


Q ss_pred             CCCCceEEEEeCCC-------cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC--------CcEEEEecccc
Q 035621          190 GSFNSIIISCSMDC-------TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD--------GLIYKGLLKYQ  254 (387)
Q Consensus       190 ~~~~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~  254 (387)
                      +  + +++++..++       ...+|.+.+++....... ..+..  ++|+|+.|+.++.+        ..|++||  .+
T Consensus       181 d--g-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~  252 (347)
T 2gop_A          181 D--K-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GK  252 (347)
T ss_dssp             T--E-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SS
T ss_pred             C--e-EEEEEecccccccccccccEEEeCCCceEEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CC
Confidence            7  4 777665542       334444445543332233 44444  39999998887654        3677777  31


Q ss_pred             ccccccccceeEeecccccccEEE-EEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          255 SRQQMHKGQELVTLANRHDGVVVS-VMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                               ....+...+...+.. +.|+ ++ ++++++.++.+++| +.+++....+. + .+.|.++.+++
T Consensus       253 ---------~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~-~-~~~v~~~~~s~  311 (347)
T 2gop_A          253 ---------EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK-G-RHWIMGFDVDE  311 (347)
T ss_dssp             ---------CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC-S-SSEEEEEEESS
T ss_pred             ---------ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec-C-CCeEEeeeeeC
Confidence                     122233456677886 8999 88 88999999999999 88776644443 3 55777777765

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.73  E-value=6.4e-15  Score=126.16  Aligned_cols=240  Identities=8%  Similarity=0.027  Sum_probs=166.8

Q ss_pred             CCCCCeEEEEEccCCCcccccC-------CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEE
Q 035621           60 TTGSGSVHLYNLWSSTPLHNIP-------VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLK  132 (387)
Q Consensus        60 ~~~d~~v~vw~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~  132 (387)
                      ++.++.|.++|.++++....+.       .......+.+. +++..++...++.|.+||..+++.+.++. .......++
T Consensus        13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~   90 (328)
T 3dsm_A           13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIH   90 (328)
T ss_dssp             TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEE
T ss_pred             CCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEE
Confidence            4568999999999887655431       22346677774 34455555667899999999999988885 356789999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC-----CCeEEEEEeeCCCCceEEEEe-CCCcEE
Q 035621          133 ISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN-----DSVTAITCCIGSFNSIIISCS-MDCTCK  206 (387)
Q Consensus       133 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~l~s~~-~d~~i~  206 (387)
                      ++++++.+++...++.|.+||.            .+......+....     .....+++ .+  +.++++.. .++.|.
T Consensus        91 ~~~~g~lyv~~~~~~~v~~iD~------------~t~~~~~~i~~g~~~~~~~~p~~i~~-~~--~~lyv~~~~~~~~v~  155 (328)
T 3dsm_A           91 FLSDEKAYVTQIWDYRIFIINP------------KTYEITGYIECPDMDMESGSTEQMVQ-YG--KYVYVNCWSYQNRIL  155 (328)
T ss_dssp             EEETTEEEEEEBSCSEEEEEET------------TTTEEEEEEECTTCCTTTCBCCCEEE-ET--TEEEEEECTTCCEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEEC------------CCCeEEEEEEcCCccccCCCcceEEE-EC--CEEEEEcCCCCCEEE
Confidence            9998854444448899999998            3444444444322     13445666 32  34555544 488999


Q ss_pred             EEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccC----------CcEEEEeccccccccccccceeEeecccccccE
Q 035621          207 FWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSD----------GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV  276 (387)
Q Consensus       207 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  276 (387)
                      ++|+.+++.+..+........++++|+|++++++..+          +.|+++|..+...        ...+.......+
T Consensus       156 viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v--------~~~~~~~~g~~p  227 (328)
T 3dsm_A          156 KIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV--------EKQFKFKLGDWP  227 (328)
T ss_dssp             EEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE--------EEEEECCTTCCC
T ss_pred             EEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE--------EEEEecCCCCCc
Confidence            9999999999888877778899999999877766554          7899999876321        111111113468


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCccEEEE-eecccCCCceeEEEEe
Q 035621          277 VSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMV-LKNELAGSISEMVIAT  326 (387)
Q Consensus       277 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~  326 (387)
                      ..++|+|++++|.++..  .|.+||..+++.... +.......+.++++.+
T Consensus       228 ~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp  276 (328)
T 3dsm_A          228 SEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP  276 (328)
T ss_dssp             EEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECT
T ss_pred             eeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcC
Confidence            99999999998887754  899999999886421 1111124577777765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=2.8e-14  Score=130.10  Aligned_cols=237  Identities=13%  Similarity=0.046  Sum_probs=173.5

Q ss_pred             ccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC--CCceeEEccCCCCCeEEEEEc-
Q 035621           58 SPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP--KGDILRSFSAHDKPVSCLKIS-  134 (387)
Q Consensus        58 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~-  134 (387)
                      ++...++.|.++|..+++.+..+.....+..+.|+|||+++++++.++.|.+||+.  +++.+..+... .....++|+ 
T Consensus       171 V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~  249 (567)
T 1qks_A          171 VTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSK  249 (567)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECC
T ss_pred             EEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEcc
Confidence            33678899999999999999888887788899999999999999999999999995  78888877653 346899999 


Q ss_pred             ---CCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeec----------cCC-CeEEEEEeeCCCCceEEEE
Q 035621          135 ---PDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA----------HND-SVTAITCCIGSFNSIIISC  199 (387)
Q Consensus       135 ---~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~i~~~~~~~~~~~~~l~s~  199 (387)
                         |||+++++++. ++.+.++|.            .+.+.+..+..          |.. .+..+..+++. ..+++..
T Consensus       250 ~~~pDGk~l~v~n~~~~~v~ViD~------------~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~-~~~vv~~  316 (567)
T 1qks_A          250 MEGWEDKYAIAGAYWPPQYVIMDG------------ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR-PEFIVNV  316 (567)
T ss_dssp             STTCTTTEEEEEEEETTEEEEEET------------TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS-SEEEEEE
T ss_pred             ccCCCCCEEEEEEccCCeEEEEEC------------CCCcEEEEEeccccccccccccCCCceEEEEEcCCC-CEEEEEe
Confidence               69998887775 589999998            34444444332          222 56777777764 4667777


Q ss_pred             eCCCcEEEEeCCCCcE--EEEEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEe-eccccccc
Q 035621          200 SMDCTCKFWRLLNGTH--LSTVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVT-LANRHDGV  275 (387)
Q Consensus       200 ~~d~~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~  275 (387)
                      ..+|.|.++|....+.  +..+........+.|+|++++++++. .++.|.++|..+.......     .. -...|.+.
T Consensus       317 ~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i-----~vgg~~Phpg~  391 (567)
T 1qks_A          317 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE-----DTGGQTPHPGR  391 (567)
T ss_dssp             TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE-----ECSSSSBCCTT
T ss_pred             cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE-----eccCcCCCCcc
Confidence            7789999999987643  33444566788899999999988776 4889999999875322111     00 01134432


Q ss_pred             EEEEEEecCCC-EEEEEe-CCCcEEEEECCC-------ccEEEEeecc
Q 035621          276 VVSVMMMNEGK-NLVSAA-EDGSVYIWEIEK-------RQVVMVLKNE  314 (387)
Q Consensus       276 v~~~~~s~~~~-~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~  314 (387)
                      -..+ ++|++. .++++. .++.|.++|..+       .+.++++...
T Consensus       392 g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~  438 (567)
T 1qks_A          392 GANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL  438 (567)
T ss_dssp             CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred             ceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC
Confidence            2222 678744 445543 468999999988       6788888764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.72  E-value=2e-14  Score=136.94  Aligned_cols=280  Identities=8%  Similarity=-0.026  Sum_probs=174.4

Q ss_pred             ccCCCcEEEeeCCCCc---EEEE--eCC---CCceeEec------cCCCCCceeEEEcCccceeeecccc-CCCCCeEEE
Q 035621            4 HLPCNEVILTSSPEGP---ITAY--NPS---SGAILAHF------SGSRSPRRGLTFAGKPFIAASHISP-TTGSGSVHL   68 (387)
Q Consensus         4 ~s~~~~~l~~~~~dg~---i~iw--d~~---~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~-~~~d~~v~v   68 (387)
                      .+|+|++++....++.   -.+|  +..   .++....+      .+|...+..++|+|++..++..... |+....|++
T Consensus       114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v  193 (741)
T 1yr2_A          114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF  193 (741)
T ss_dssp             CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence            4689988876654332   4444  443   33332211      2233367889999987655542222 222257999


Q ss_pred             EEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCc--------------EEEEeCCCCc----eeEEccCCCCCeEE
Q 035621           69 YNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGN--------------VYAISVPKGD----ILRSFSAHDKPVSC  130 (387)
Q Consensus        69 w~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------------i~i~d~~~~~----~~~~~~~~~~~v~~  130 (387)
                      ||+.+++.+........+..++|+|| +.|+.+..++.              |++|++.+++    .+.....+...+..
T Consensus       194 ~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          194 VGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             EETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             EECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            99999987543222222468999999 98888876553              8999997765    22222333345889


Q ss_pred             EEEcCCCCEEEEEeCCC-----cEEEEeCCcccccCCCCCCCCc--cceEeeeccCCCeEEEEEeeCCCCceEEEEeC--
Q 035621          131 LKISPDGSLLISGGDDG-----VIATVPIFQLVDEHTDDKNPDD--LMLQKFVAHNDSVTAITCCIGSFNSIIISCSM--  201 (387)
Q Consensus       131 ~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--  201 (387)
                      +.|+|||++|+..+.++     .|++||+.            ..  .....+..+...+.... .+++  +.|+..+.  
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~------------~~~~~~~~~l~~~~~~~~~~~-~~dg--~~l~~~s~~~  337 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVT------------NGKIGPVTALIPDLKAQWDFV-DGVG--DQLWFVSGDG  337 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEE------------TTEECCCEEEECSSSSCEEEE-EEET--TEEEEEECTT
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECC------------CCCCcccEEecCCCCceEEEE-eccC--CEEEEEECCC
Confidence            99999999888877544     79999882            22  11344555555555443 3654  66666655  


Q ss_pred             --CCcEEEEeCCCC--cEEEEEec-CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccE
Q 035621          202 --DCTCKFWRLLNG--THLSTVTF-PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV  276 (387)
Q Consensus       202 --d~~i~iwd~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v  276 (387)
                        ++.|.+||+.++  .....+.+ ...+..++++ ++..+++...++..++|.+...       +.....+...+.+.+
T Consensus       338 ~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~-------g~~~~~l~~~~~~~v  409 (741)
T 1yr2_A          338 APLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD-------GKPAGAVSLPGIGSA  409 (741)
T ss_dssp             CTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT-------SCEEEECBCSSSCEE
T ss_pred             CCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC-------CCceeeccCCCCeEE
Confidence              345999999875  23333333 3446677777 5567777788888888766531       112222222346678


Q ss_pred             EEEEEecCCCEEEE----EeCCCcEEEEECCCccE
Q 035621          277 VSVMMMNEGKNLVS----AAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       277 ~~~~~s~~~~~l~s----~~~dg~i~iwd~~~~~~  307 (387)
                      ..+.++|+++.|+.    ....++|++||+.+++.
T Consensus       410 ~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          410 SGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            89999999886652    23457899999998873

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.71  E-value=3.1e-15  Score=141.89  Aligned_cols=236  Identities=10%  Similarity=0.093  Sum_probs=161.5

Q ss_pred             ccccCCCcEEEeeCCCC-----cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCC-------------
Q 035621            2 LHHLPCNEVILTSSPEG-----PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS-------------   63 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d-------------   63 (387)
                      ++|||||++||.+..++     .|++||+.+++.+.....+. .+..++|+|++..+..    ++.+             
T Consensus       130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~----~~~~~~~~~~~~~~~~~  204 (710)
T 2xdw_A          130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFY----NAYPQQDGKSDGTETST  204 (710)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEE----EECCCCSSCCSSSCCCC
T ss_pred             EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEE----EEECCcccccccccccc
Confidence            47999999998765433     89999999998766432222 2678999997543322    2222             


Q ss_pred             ---CeEEEEEccCCCcc--cccC---CCCCeeeEEeccCCCEEEEecC-----CCcEEEEeCCC------Cc-eeEEccC
Q 035621           64 ---GSVHLYNLWSSTPL--HNIP---VPEPVAPLATTADGSYLFTGGL-----SGNVYAISVPK------GD-ILRSFSA  123 (387)
Q Consensus        64 ---~~v~vw~~~~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~~~~~  123 (387)
                         ..|++|++.+++..  ..+.   ++..+..+.|+|||++|+..+.     +..|++||+.+      +. ....+..
T Consensus       205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~  284 (710)
T 2xdw_A          205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (710)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence               34999999877532  2222   2345788999999999988764     56899999976      43 3555656


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCcccccCCCCCCCCccceEeeeccCC--CeEEEEEeeCCCCceEE
Q 035621          124 HDKPVSCLKISPDGSLLISGGDD----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND--SVTAITCCIGSFNSIII  197 (387)
Q Consensus       124 ~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~  197 (387)
                      +...+.. .|+|+|+.|+..+..    +.|.+||+...          .......+..|..  .+..+.++++  +.+++
T Consensus       285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~----------~~~~~~~l~~~~~~~~~~~~~~~~~--~~lv~  351 (710)
T 2xdw_A          285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDP----------EESKWKVLVPEHEKDVLEWVACVRS--NFLVL  351 (710)
T ss_dssp             SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSC----------CGGGCEEEECCCSSCEEEEEEEETT--TEEEE
T ss_pred             CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCC----------CcccceeccCCCCCCeEEEEEEEcC--CEEEE
Confidence            6666655 488888877766553    35899998321          1112344555544  6777888744  47888


Q ss_pred             EEeCCCc--EEEEeCCCCcEEEEEec-CCceeEEEeCCCCCeEEEEcc----CCcEEEEeccccc
Q 035621          198 SCSMDCT--CKFWRLLNGTHLSTVTF-PCAIMGLALDPTETDFFAAGS----DGLIYKGLLKYQS  255 (387)
Q Consensus       198 s~~~d~~--i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~  255 (387)
                      +...|+.  |.+||+.+++.+..+.. ...+..++++|+++.++....    .+.++.||+.++.
T Consensus       352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          352 CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8888884  66778777887777764 456888999999987765432    5789999987744

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.70  E-value=6.7e-13  Score=111.99  Aligned_cols=258  Identities=10%  Similarity=0.028  Sum_probs=173.7

Q ss_pred             cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-C-CCCCeeeEEeccCCCEEEEecCCCcEEEEeC
Q 035621           35 SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI-P-VPEPVAPLATTADGSYLFTGGLSGNVYAISV  112 (387)
Q Consensus        35 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  112 (387)
                      ..+...+.++++.+++.+...    ...++.|..||.. ++..... . ....+..+++.++|.+.++...++.|..||.
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~----~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~   85 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWIT----QHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK   85 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEE----ETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             CCcCCCccceEECCCCCEEEE----ecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence            344566899999986554332    3457899999987 5433211 1 3467899999999998887777888999997


Q ss_pred             CCCcee-EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC
Q 035621          113 PKGDIL-RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS  191 (387)
Q Consensus       113 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  191 (387)
                      . ++.. ..+......+.++++.++++++++...++.|..||..            ..........+...+..+++.++ 
T Consensus        86 ~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~------------g~~~~~~~~~~~~~~~~i~~~~~-  151 (299)
T 2z2n_A           86 K-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD------------GKIREYELPNKGSYPSFITLGSD-  151 (299)
T ss_dssp             T-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT------------CCEEEEECSSTTCCEEEEEECTT-
T ss_pred             C-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC------------CCEEEecCCCCCCCCceEEEcCC-
Confidence            6 4432 2222345678999999999888877778899999871            11111112223456788888766 


Q ss_pred             CCceEEEEeCCCcEEEEeCCCCcEEEE-Ee-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeec
Q 035621          192 FNSIIISCSMDCTCKFWRLLNGTHLST-VT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA  269 (387)
Q Consensus       192 ~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  269 (387)
                       +.++++...++.|..||. +++.... .. ....+..+++++++..+++...++.|.+|+. .+...        ....
T Consensus       152 -g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~--------~~~~  220 (299)
T 2z2n_A          152 -NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT--------EFKI  220 (299)
T ss_dssp             -SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE--------EEEC
T ss_pred             -CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE--------EEEC
Confidence             477777767789999998 6665432 12 2356889999999987777767889999998 42211        1112


Q ss_pred             ccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee-cccCCCceeEEE
Q 035621          270 NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK-NELAGSISEMVI  324 (387)
Q Consensus       270 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~  324 (387)
                      ..+...+.+++++++|+++++...++.|..||. +++. ..+. ......+.++++
T Consensus       221 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~  274 (299)
T 2z2n_A          221 PTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF  274 (299)
T ss_dssp             SSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE
T ss_pred             CCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe
Confidence            234567899999999997777667889999998 4543 3332 112235666666

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.70  E-value=3.6e-13  Score=113.68  Aligned_cols=269  Identities=10%  Similarity=0.046  Sum_probs=180.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeE-eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-c
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILA-HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-N   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~   79 (387)
                      ++++++|++.++...++.|.+||.. ++... .+..+...+.++++.+++.+...    ...++.|..||.. ++... .
T Consensus        25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~----~~~~~~v~~~d~~-g~~~~~~   98 (300)
T 2qc5_A           25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFT----ENGANKIGKLSKK-GGFTEYP   98 (300)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEE----ETTTTEEEEECTT-SCEEEEE
T ss_pred             eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEE----ecCCCeEEEECCC-CCeEEec
Confidence            4577899988887778999999987 55443 23333456889999886544332    4457889999987 54321 1


Q ss_pred             cC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE-EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621           80 IP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR-SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL  157 (387)
Q Consensus        80 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  157 (387)
                      .. ....+..+++.++|++.++...++.|..+|.. ++... .+......+.++++.+++++.++...++.|..+|... 
T Consensus        99 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-  176 (300)
T 2qc5_A           99 LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTG-  176 (300)
T ss_dssp             CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-
T ss_pred             CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCC-
Confidence            11 23568899999999888877778899999987 65543 2333456789999999999776666678899998611 


Q ss_pred             cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE-e-cCCceeEEEeCCCCC
Q 035621          158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV-T-FPCAIMGLALDPTET  235 (387)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~  235 (387)
                                 .........+...+..+++.++  ++++++....+.|..||. +++..... . ....+.+++++++|+
T Consensus       177 -----------~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~  242 (300)
T 2qc5_A          177 -----------KLEEYPLPTNAAAPVGITSGND--GALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE  242 (300)
T ss_dssp             -----------CEEEEECSSTTCCEEEEEECTT--SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred             -----------cEEEeeCCCCCCCcceEEECCC--CCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC
Confidence                       1111112233456778888765  467766666778999998 55543321 1 245688999999998


Q ss_pred             eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      .+++...++.|..++... ...        ..........+.+++++++|+++++.. . .|..+|.+
T Consensus       243 l~v~~~~~~~i~~~~~~g-~~~--------~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          243 IWFTEWGANQIGRITNDN-TIQ--------EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             EEEEETTTTEEEEECTTS-CEE--------EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             EEEeccCCCeEEEECCCC-cEE--------EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            766666678999998732 111        111122345678899999998666655 4 67766653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.68  E-value=3.4e-14  Score=123.93  Aligned_cols=276  Identities=13%  Similarity=0.110  Sum_probs=182.3

Q ss_pred             CCCcEEEeeCC-C----CcEEEEeCCCCceeEeccCCCCCceeEEEcCcccee--eecc----ccCCCCCeEEEEEccCC
Q 035621            6 PCNEVILTSSP-E----GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIA--ASHI----SPTTGSGSVHLYNLWSS   74 (387)
Q Consensus         6 ~~~~~l~~~~~-d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~----~~~~~d~~v~vw~~~~~   74 (387)
                      |+++++++... +    +.|.++|..+++.+.++.....+  .++++|++..+  ++..    ..+..++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            46665555443 2    79999999999999999765555  89999965433  2210    01124678999999999


Q ss_pred             CcccccCCC--------CCeeeEEeccCCCEEEEecC--CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCC-CEEEEE
Q 035621           75 TPLHNIPVP--------EPVAPLATTADGSYLFTGGL--SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDG-SLLISG  143 (387)
Q Consensus        75 ~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~  143 (387)
                      +.+..+...        .....+.++|||++++++..  ++.|.++|+.+++.+..+.....    ....|++ +.+++.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~  235 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMN  235 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEE
Confidence            988777542        34678999999999999864  57899999999999888763221    2233332 455666


Q ss_pred             eCCCcEEEEeCCcccccCCCCCCCCccceE----eeeccCCCe-EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE--
Q 035621          144 GDDGVIATVPIFQLVDEHTDDKNPDDLMLQ----KFVAHNDSV-TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL--  216 (387)
Q Consensus       144 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--  216 (387)
                      +.||.+.+.++..            .....    .+.....++ ..+.+.+++  ..++..+..+.+.+.|+......  
T Consensus       236 ~~dG~~~~V~~~~------------~~v~~~~~~~~~v~~~p~~~~~~~~~dg--~~~~~~s~~g~V~ViD~~~~~~~v~  301 (426)
T 3c75_H          236 CRDGSLARVDFAD------------GETKVTNTEVFHTEDELLINHPAFSLRS--GRLVWPTYTGKIFQADLTAEGATFR  301 (426)
T ss_dssp             ETTSSEEEEECCT------------TCCEEEECCCCSCTTSCBCSCCEECTTT--CEEEEEBTTSEEEEEEECSSCEEEC
T ss_pred             cCCCCEEEEECCC------------CcEEEEeeeeeccCCCceeeEeeecCCC--CEEEEEeCCCcEEEEeccCCceEEe
Confidence            6777776666611            11110    111111111 123455554  44445566789999998765422  


Q ss_pred             EEEec-----------CCceeEEEeCCCCCeEEEEcc----------CCcEEEEeccccccccccccceeEeeccccccc
Q 035621          217 STVTF-----------PCAIMGLALDPTETDFFAAGS----------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGV  275 (387)
Q Consensus       217 ~~~~~-----------~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  275 (387)
                      ..+..           +.....++++|+++.+++...          ++.|.++|..+..        .+..+.  -...
T Consensus       302 ~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--------vv~~I~--vg~~  371 (426)
T 3c75_H          302 APIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--------RINKIE--LGHE  371 (426)
T ss_dssp             CCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--------EEEEEE--EEEE
T ss_pred             eeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe--------EEEEEE--CCCC
Confidence            11111           122233789999998888753          3579999998732        333332  1235


Q ss_pred             EEEEEEecCCC-EEEEEe-CCCcEEEEECCCccEEEEe
Q 035621          276 VVSVMMMNEGK-NLVSAA-EDGSVYIWEIEKRQVVMVL  311 (387)
Q Consensus       276 v~~~~~s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~  311 (387)
                      ...+.|+|||+ ++++.. .++.|.++|+.+++.++++
T Consensus       372 P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          372 IDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             cCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            88999999999 888877 5899999999999999997

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.64  E-value=1.1e-13  Score=117.72  Aligned_cols=236  Identities=10%  Similarity=0.054  Sum_probs=159.9

Q ss_pred             ccccCCCcEEEe-------eCCCCcEEEEeCCCCceeEecc----CCCCCceeEEEcCc-cceeeeccccCCCCCeEEEE
Q 035621            2 LHHLPCNEVILT-------SSPEGPITAYNPSSGAILAHFS----GSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLY   69 (387)
Q Consensus         2 l~~s~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw   69 (387)
                      ++|+++|+++++       +..++.|.+||..+++......    ++...+.+++++++ +.+..     ++..+.|.+|
T Consensus        23 ~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-----~~~~~~l~~~   97 (314)
T 1pjx_A           23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-----ADMRLGLLVV   97 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-----EETTTEEEEE
T ss_pred             ceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-----EECCCCEEEE
Confidence            468899988888       6778899999988877643222    24466889999986 54322     2234478999


Q ss_pred             EccCCCcccc-cCC-----CCCeeeEEeccCCCEEEEecCC---------------CcEEEEeCCCCceeEEccCCCCCe
Q 035621           70 NLWSSTPLHN-IPV-----PEPVAPLATTADGSYLFTGGLS---------------GNVYAISVPKGDILRSFSAHDKPV  128 (387)
Q Consensus        70 ~~~~~~~~~~-~~~-----~~~v~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~~v  128 (387)
                      |.+ ++.... ...     ...+.++++.++|++.++...+               +.|..|+.. ++..... .+....
T Consensus        98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~  174 (314)
T 1pjx_A           98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFP  174 (314)
T ss_dssp             ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSE
T ss_pred             eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCCc
Confidence            987 654333 221     1358899999999887776554               568888865 5543332 233456


Q ss_pred             EEEEEc----CCCCEEEEE-eCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC-CCeEEEEEeeCCCCceEEEEeCC
Q 035621          129 SCLKIS----PDGSLLISG-GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN-DSVTAITCCIGSFNSIIISCSMD  202 (387)
Q Consensus       129 ~~~~~~----~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~d  202 (387)
                      ..++++    |+++.++.+ ..++.|.+||+......      ........+..+. .....+++.++  ++++++...+
T Consensus       175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~------~~~~~~~~~~~~~~~~p~~i~~d~~--G~l~v~~~~~  246 (314)
T 1pjx_A          175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI------ENKKVWGHIPGTHEGGADGMDFDED--NNLLVANWGS  246 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE------EEEEEEEECCCCSSCEEEEEEEBTT--CCEEEEEETT
T ss_pred             ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc------ccceEEEECCCCCCCCCCceEECCC--CCEEEEEcCC
Confidence            889999    999765555 56789999987310000      0001222233333 45677888776  4788887788


Q ss_pred             CcEEEEeCCCCcEEEEEecC-CceeEEEeCCCCCeEEEE-ccCCcEEEEeccc
Q 035621          203 CTCKFWRLLNGTHLSTVTFP-CAIMGLALDPTETDFFAA-GSDGLIYKGLLKY  253 (387)
Q Consensus       203 ~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~  253 (387)
                      +.|.+||..+++.+..+..+ ..+.+++++|+++.|+++ ..++.|..|++..
T Consensus       247 ~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          247 SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            99999999878777777644 678999999999966555 5578899998865

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.62  E-value=1.5e-14  Score=124.48  Aligned_cols=179  Identities=8%  Similarity=0.019  Sum_probs=131.5

Q ss_pred             CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc-----------eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621           84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGD-----------ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATV  152 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  152 (387)
                      .+++.+++++...++++|+.++ +.+|++.+.+           ..... .+.. |+.++|  ++++|+++ .++.|++|
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence            3689999999999999999875 6679864332           11222 3556 999999  88999998 88999999


Q ss_pred             eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCC
Q 035621          153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDP  232 (387)
Q Consensus       153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~  232 (387)
                      |+...            ........|..++.++.+.+.    .+++++.||.|.+||+.+++...   ....|.+++|+|
T Consensus       112 dv~sl------------~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp  172 (388)
T 1xip_A          112 DLEEL------------SEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN  172 (388)
T ss_dssp             ESSST------------TCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS
T ss_pred             Echhh------------hccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC
Confidence            99443            233445567777887765533    38888999999999999887653   446899999999


Q ss_pred             CCCeEEEEccCCcEEEEecccccc--c-cccccceeEeecccccccEEEEEEecCCCEEEE
Q 035621          233 TETDFFAAGSDGLIYKGLLKYQSR--Q-QMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS  290 (387)
Q Consensus       233 ~~~~l~~~~~dg~i~i~d~~~~~~--~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  290 (387)
                      +|  +++|..||.+++|+......  . .......+ .-..+|...|.+++|.+++.++++
T Consensus       173 kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~-~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          173 SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSEL-EELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHH-HTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             Cc--eEEEEcCCcEEEEcCCCccccccceecCCccc-ccccCCCeeEEEEEEecCCeEEEE
Confidence            99  78899999999998876431  1 11000000 000137788999999999998886

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.62  E-value=5.2e-13  Score=113.58  Aligned_cols=240  Identities=9%  Similarity=-0.008  Sum_probs=154.9

Q ss_pred             CCCceeEEEcCccceeee---ccccCCCCCeEEEEEccCCCcccccC-----CCCCeeeEEeccC-CCEEEEecCCCcEE
Q 035621           38 RSPRRGLTFAGKPFIAAS---HISPTTGSGSVHLYNLWSSTPLHNIP-----VPEPVAPLATTAD-GSYLFTGGLSGNVY  108 (387)
Q Consensus        38 ~~~v~~~~~~~~~~~~~~---~~~~~~~d~~v~vw~~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~l~~~~~dg~i~  108 (387)
                      -....+++|++++.+...   .......++.|..||..+++......     +...+..++++++ ++++++.. .+.|.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~   95 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL   95 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence            334678899875533221   00003467899999987776543222     2356889999999 66555544 44799


Q ss_pred             EEeCCCCceeEE-ccC----CCCCeEEEEEcCCCCEEEEEeCC---------------CcEEEEeCCcccccCCCCCCCC
Q 035621          109 AISVPKGDILRS-FSA----HDKPVSCLKISPDGSLLISGGDD---------------GVIATVPIFQLVDEHTDDKNPD  168 (387)
Q Consensus       109 i~d~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~  168 (387)
                      +||.. ++.... ...    ....+.++++++++++.++...+               +.|..||.            . 
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~-  161 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT------------D-  161 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT------------T-
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECC------------C-
Confidence            99987 665433 221    12358899999999887776655               45666654            1 


Q ss_pred             ccceEeeeccCCCeEEEEEe----eCCCCceE-EEEeCCCcEEEEeCC-CCcE-----EEEEecC--CceeEEEeCCCCC
Q 035621          169 DLMLQKFVAHNDSVTAITCC----IGSFNSII-ISCSMDCTCKFWRLL-NGTH-----LSTVTFP--CAIMGLALDPTET  235 (387)
Q Consensus       169 ~~~~~~~~~~~~~i~~~~~~----~~~~~~~l-~s~~~d~~i~iwd~~-~~~~-----~~~~~~~--~~v~~~~~~~~~~  235 (387)
                      . ....+..+......++++    +++  +.+ ++...++.|.+||+. +++.     ...+...  ..+..++++++|+
T Consensus       162 g-~~~~~~~~~~~~~~i~~~~~~d~dg--~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  238 (314)
T 1pjx_A          162 G-QMIQVDTAFQFPNGIAVRHMNDGRP--YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             S-CEEEEEEEESSEEEEEEEECTTSCE--EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred             C-CEEEeccCCCCcceEEEecccCCCC--CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence            1 122223334456788888    663  444 455567899999986 4432     1122211  5688999999998


Q ss_pred             eEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEE-EEEeCCCcEEEEECCC
Q 035621          236 DFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNL-VSAAEDGSVYIWEIEK  304 (387)
Q Consensus       236 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~  304 (387)
                      .+++...++.|.+||..++...        .. ...+...+.+++|+|+++.| ++...++.|..|++..
T Consensus       239 l~v~~~~~~~i~~~d~~~g~~~--------~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          239 LLVANWGSSHIEVFGPDGGQPK--------MR-IRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEETTTEEEEECTTCBSCS--------EE-EECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEEcCCCEEEEEcCCCCcEe--------EE-EeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            8887777889999998743211        11 12345678999999999955 4555678899999875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.62  E-value=5.6e-13  Score=125.01  Aligned_cols=288  Identities=12%  Similarity=0.139  Sum_probs=184.2

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCc-----------eeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPR-----------RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP   76 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~   76 (387)
                      +..+++++.++.|+.+|..+|+.+.++..+...-           ..+++..      ..++.++.|+.|..+|..+|+.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~v~v~~~dg~l~AlDa~TG~~  143 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWK------GKVYVGVLDGRLEAIDAKTGQR  143 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEET------TEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEEC------CEEEEEccCCEEEEEECCCCCE
Confidence            5567777788999999999999988876433210           1122222      2334467899999999999998


Q ss_pred             ccccCCC-C--CeeeEEecc---CCCEEEEec------CCCcEEEEeCCCCceeEEccCC--C-----------------
Q 035621           77 LHNIPVP-E--PVAPLATTA---DGSYLFTGG------LSGNVYAISVPKGDILRSFSAH--D-----------------  125 (387)
Q Consensus        77 ~~~~~~~-~--~v~~~~~~~---~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~--~-----------------  125 (387)
                      +..+... .  ....+..+|   ++ .++++.      .+|.|..||.++|+.+..+...  .                 
T Consensus       144 ~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  222 (689)
T 1yiq_A          144 AWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW  222 (689)
T ss_dssp             EEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred             eeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence            8766542 1  111112222   44 455553      3689999999999988766421  0                 


Q ss_pred             ------------CCeEEEEEcCCCCEEEEEeCCCc-------------------EEEEeCCcccccCCCCCCCCccceEe
Q 035621          126 ------------KPVSCLKISPDGSLLISGGDDGV-------------------IATVPIFQLVDEHTDDKNPDDLMLQK  174 (387)
Q Consensus       126 ------------~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~  174 (387)
                                  .....++++|+..+++.+..++.                   |..+|.            .+++.+-.
T Consensus       223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~------------~TG~~~W~  290 (689)
T 1yiq_A          223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNA------------DTGEYVWH  290 (689)
T ss_dssp             CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEET------------TTCCEEEE
T ss_pred             CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEc------------cCCceeEe
Confidence                        01125788898889999888764                   888888            44555544


Q ss_pred             eec--cC-------CCeEEEEEeeCCC-CceEEEEeCCCcEEEEeCCCCcEEEEEecCC---------------------
Q 035621          175 FVA--HN-------DSVTAITCCIGSF-NSIIISCSMDCTCKFWRLLNGTHLSTVTFPC---------------------  223 (387)
Q Consensus       175 ~~~--~~-------~~i~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------------------  223 (387)
                      ++.  |.       .+........++. ...++.++.+|.++++|..+|+.+.......                     
T Consensus       291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~  370 (689)
T 1yiq_A          291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENA  370 (689)
T ss_dssp             EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHH
T ss_pred             eecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhc
Confidence            433  21       1122222222320 1378899999999999999999886544211                     


Q ss_pred             -------------------ceeEEEeCCCCCeEEEEccC-----------------------------------------
Q 035621          224 -------------------AIMGLALDPTETDFFAAGSD-----------------------------------------  243 (387)
Q Consensus       224 -------------------~v~~~~~~~~~~~l~~~~~d-----------------------------------------  243 (387)
                                         ....++++|+...+++...+                                         
T Consensus       371 ~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~  450 (689)
T 1yiq_A          371 AYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMA  450 (689)
T ss_dssp             CTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHH
T ss_pred             cccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCC
Confidence                               01126888888888876432                                         


Q ss_pred             ----CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCc
Q 035621          244 ----GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSI  319 (387)
Q Consensus       244 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  319 (387)
                          |.|+.||+.+++...        ..  .+..++..-.+...+.+++.|+.||.|+.||.++|+++.+++......-
T Consensus       451 ~~~~g~l~A~D~~tG~~~W--------~~--~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~  520 (689)
T 1yiq_A          451 KSWSGKLIAWDPVKQQAAW--------EV--PYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMA  520 (689)
T ss_dssp             TTCEEEEEEEETTTTEEEE--------EE--EESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             CCcceeEEEEECCCCCeEe--------Ec--cCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCccc
Confidence                567777777643221        11  1222233335566788999999999999999999999999986544333


Q ss_pred             eeEEE
Q 035621          320 SEMVI  324 (387)
Q Consensus       320 ~~~~~  324 (387)
                      +.+.+
T Consensus       521 ~p~ty  525 (689)
T 1yiq_A          521 APVTY  525 (689)
T ss_dssp             CCEEE
T ss_pred             CceEE
Confidence            44444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.62  E-value=8.3e-14  Score=131.71  Aligned_cols=217  Identities=11%  Similarity=0.029  Sum_probs=142.2

Q ss_pred             CeeeEEeccCCCEEEE-----ecCCCcEEEEeCCCCceeEEccCCCCCe--EEEEEcCCCCEEEEEeCCCc---------
Q 035621           85 PVAPLATTADGSYLFT-----GGLSGNVYAISVPKGDILRSFSAHDKPV--SCLKISPDGSLLISGGDDGV---------  148 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~---------  148 (387)
                      .+..++|||||++|+.     |+.+..|++||+.+++.+.  ..+...+  ..++|+|||+.|+.++.|..         
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~  199 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERP  199 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCC
Confidence            5889999999999984     3445689999999988651  1111222  67899999999999988776         


Q ss_pred             ----EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC----cEEEEeCCCCcEEEEEe
Q 035621          149 ----IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC----TCKFWRLLNGTHLSTVT  220 (387)
Q Consensus       149 ----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~  220 (387)
                          |++|++....        .....+.....+...+..+.|+|++  ++|+..+.++    .|.+||..+++......
T Consensus       200 ~~~~v~~~~l~t~~--------~~~~lv~~~~~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~  269 (695)
T 2bkl_A          200 GYTTIRYHTLGTEP--------SKDTVVHERTGDPTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEKDFRLLVK  269 (695)
T ss_dssp             GGCEEEEEETTSCG--------GGCEEEECCCCCTTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCSSCEEEEE
T ss_pred             CCCEEEEEECCCCc--------hhceEEEecCCCCEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCCceEEeec
Confidence                9999983210        0012333344455678899999885  7777666655    67777766665444444


Q ss_pred             cCCceeEEEeCCCCCeEEEEcc----CCcEEEEeccccccccccccceeEeecccc-cccEEEEEEecCCCEEEEEeCCC
Q 035621          221 FPCAIMGLALDPTETDFFAAGS----DGLIYKGLLKYQSRQQMHKGQELVTLANRH-DGVVVSVMMMNEGKNLVSAAEDG  295 (387)
Q Consensus       221 ~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg  295 (387)
                      ....+....+ ++|. ++..+.    ++.|++||+..+...      ....+...+ ...+..++|+ ++.++++...|+
T Consensus       270 ~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~------~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg  340 (695)
T 2bkl_A          270 GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA------SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDA  340 (695)
T ss_dssp             CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG------GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETT
T ss_pred             CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc------CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECC
Confidence            5555566666 5666 544443    578999998763210      012222223 4567888888 677888899999


Q ss_pred             cEEEEECC-CccEEEEeecccCCCceeE
Q 035621          296 SVYIWEIE-KRQVVMVLKNELAGSISEM  322 (387)
Q Consensus       296 ~i~iwd~~-~~~~~~~~~~~~~~~v~~~  322 (387)
                      ..++|.+. +++.+..+..+..+.+..+
T Consensus       341 ~~~l~~~~~~g~~~~~l~~~~~~~v~~~  368 (695)
T 2bkl_A          341 TSEVRVATLKGKPVRTVQLPGVGAASNL  368 (695)
T ss_dssp             EEEEEEEETTCCEEEECCCSSSSEECCC
T ss_pred             EEEEEEEeCCCCeeEEecCCCCeEEEEe
Confidence            88888665 4666666654433444444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.62  E-value=1e-12  Score=115.70  Aligned_cols=228  Identities=11%  Similarity=0.017  Sum_probs=155.9

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCC--eEEEEEccCCCcccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSG--SVHLYNLWSSTPLHN   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~--~v~vw~~~~~~~~~~   79 (387)
                      |+|+|+++++++...++.|++||..+++........ .... ++|+++...+.    .+..++  .|.+++...+.....
T Consensus       136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~----~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVY----SIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEE----EEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEE----EEecCCCceEEEEEcCCCceeEE
Confidence            578899998888888899999999887766555442 3334 89998654221    133333  899998876654333


Q ss_pred             c----C-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE----ccCCCCCe--EEEEEcCC-CCEEEEEeCCC
Q 035621           80 I----P-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS----FSAHDKPV--SCLKISPD-GSLLISGGDDG  147 (387)
Q Consensus        80 ~----~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v--~~~~~~~~-~~~l~~~~~dg  147 (387)
                      +    . ....+.+++++|++..|+++..++.|+.||..++.....    ..++...-  ..++|+|+ +.++++-..++
T Consensus       210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~  289 (409)
T 3hrp_A          210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS  289 (409)
T ss_dssp             EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred             eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence            3    2 345688999999655666677788999999987764332    22222222  39999995 55666666788


Q ss_pred             cEEEEeCCcccccCCCCCCCCccceEeeecc---------------CCCeEEEEEeeCCCCceEEEEe-CCCcEEEEeCC
Q 035621          148 VIATVPIFQLVDEHTDDKNPDDLMLQKFVAH---------------NDSVTAITCCIGSFNSIIISCS-MDCTCKFWRLL  211 (387)
Q Consensus       148 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~  211 (387)
                      .|+.|+....              ...+.++               -.....+++.+++  +++++-+ .++.|+.||+.
T Consensus       290 ~I~~~~~~g~--------------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG--~lyvad~~~~~~I~~~~~~  353 (409)
T 3hrp_A          290 SVYKITPDGE--------------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG--NFYIVDGFKGYCLRKLDIL  353 (409)
T ss_dssp             EEEEECTTCC--------------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC--CEEEEETTTTCEEEEEETT
T ss_pred             EEEEEecCCC--------------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC--CEEEEeCCCCCEEEEEECC
Confidence            8999987321              1222222               1346789988875  7777777 78999999988


Q ss_pred             CCcEEEEEec---------------CCceeEEEeCCCCCeEEEEccCCcEEEEec
Q 035621          212 NGTHLSTVTF---------------PCAIMGLALDPTETDFFAAGSDGLIYKGLL  251 (387)
Q Consensus       212 ~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  251 (387)
                      ++........               -..+..+++++++.++++-..++.|+.+++
T Consensus       354 ~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          354 DGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            8765443332               135889999999877777777888887765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.61  E-value=2e-11  Score=102.87  Aligned_cols=257  Identities=8%  Similarity=-0.005  Sum_probs=171.1

Q ss_pred             CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-ccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC
Q 035621           37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK  114 (387)
Q Consensus        37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  114 (387)
                      ....+.++++.+++.+...    ...++.|.+||.. ++... ... ....+..+++.+++++.++...++.|..||.. 
T Consensus        18 ~~~~p~~i~~d~~g~l~v~----~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-   91 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFT----QHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-   91 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEE----ETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCCCcceeeECCCCCEEEE----cCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence            4456889999886544332    4467899999987 44332 111 22568899999999887777667889999987 


Q ss_pred             CceeE-EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccce-EeeeccCCCeEEEEEeeCCC
Q 035621          115 GDILR-SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML-QKFVAHNDSVTAITCCIGSF  192 (387)
Q Consensus       115 ~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~  192 (387)
                      ++... .+......+.++++.++++++++...++.|..+|..             .... ..+......+..+++.+++ 
T Consensus        92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-------------g~~~~~~~~~~~~~~~~i~~d~~g-  157 (300)
T 2qc5_A           92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-------------GTIYEYDLPNKGSYPAFITLGSDN-  157 (300)
T ss_dssp             SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-------------SCEEEEECSSTTCCEEEEEECTTS-
T ss_pred             CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-------------CCEEEccCCCCCCCceeEEECCCC-
Confidence            55432 222234678999999999888877778889999872             1111 1122234567888887764 


Q ss_pred             CceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeec
Q 035621          193 NSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLA  269 (387)
Q Consensus       193 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  269 (387)
                       +++++...++.|..||. +++... +..   ...+..+++++++..+++....+.|.+++... ..        .....
T Consensus       158 -~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g-~~--------~~~~~  225 (300)
T 2qc5_A          158 -ALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG-EI--------SEYDI  225 (300)
T ss_dssp             -SEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-CE--------EEEEC
T ss_pred             -CEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-cE--------EEEEC
Confidence             66666666788999998 555443 332   34688999999997777766778899998732 11        11111


Q ss_pred             ccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          270 NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       270 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      ..+...+.+++++++|+++++...++.|..|+. +++............+.++++.+
T Consensus       226 ~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~  281 (300)
T 2qc5_A          226 PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGK  281 (300)
T ss_dssp             SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECT
T ss_pred             CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCC
Confidence            234566899999999997777767789999998 45443221111223566666543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.61  E-value=6.5e-13  Score=124.32  Aligned_cols=279  Identities=10%  Similarity=0.106  Sum_probs=183.6

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCC-----------ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSP-----------RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP   76 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~   76 (387)
                      +..|++++.++.|+.+|..+|+.+.++......           ...+++..+      .++.++.|+.+..+|..+|+.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~------~v~v~~~dg~l~alD~~tG~~  150 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKG------KVYVGAWDGRLIALDAATGKE  150 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETT------EEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECC------EEEEEcCCCEEEEEECCCCCE
Confidence            456667777899999999999998877643221           112333332      333467899999999999998


Q ss_pred             ccccCCC-C-----CeeeEEeccCCCEEEEecC------CCcEEEEeCCCCceeEEccCCCCC-----------------
Q 035621           77 LHNIPVP-E-----PVAPLATTADGSYLFTGGL------SGNVYAISVPKGDILRSFSAHDKP-----------------  127 (387)
Q Consensus        77 ~~~~~~~-~-----~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~-----------------  127 (387)
                      +..+... .     .+..--.. .+..+++++.      +|.|+.+|..+|+.+..+......                 
T Consensus       151 ~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w  229 (677)
T 1kb0_A          151 VWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW  229 (677)
T ss_dssp             EEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred             EeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence            8776643 1     22211111 2345666553      689999999999988776532211                 


Q ss_pred             ---------------eEEEEEcCCCCEEEEEeCCC-------------------cEEEEeCCcccccCCCCCCCCccceE
Q 035621          128 ---------------VSCLKISPDGSLLISGGDDG-------------------VIATVPIFQLVDEHTDDKNPDDLMLQ  173 (387)
Q Consensus       128 ---------------v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~  173 (387)
                                     ...++++|++.+++.+..++                   .|..+|.            .+++.+-
T Consensus       230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~------------~TG~~~W  297 (677)
T 1kb0_A          230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP------------DTGKYKW  297 (677)
T ss_dssp             CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT------------TTCCEEE
T ss_pred             cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEEC------------CCCCEEE
Confidence                           13578889888888887664                   4778877            3444444


Q ss_pred             eeec--cC-------CCeEEEEEeeCCC-CceEEEEeCCCcEEEEeCCCCcEEEEEecCC------------ce------
Q 035621          174 KFVA--HN-------DSVTAITCCIGSF-NSIIISCSMDCTCKFWRLLNGTHLSTVTFPC------------AI------  225 (387)
Q Consensus       174 ~~~~--~~-------~~i~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------~v------  225 (387)
                      .++.  |.       ....-+....++. ...++.++.+|.++++|..+|+.+..+....            .+      
T Consensus       298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~  377 (677)
T 1kb0_A          298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAAR  377 (677)
T ss_dssp             EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGG
T ss_pred             EEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccC
Confidence            4332  21       1111122222320 1578999999999999999999988776321            01      


Q ss_pred             ------------------eEEEeCCCCCeEEEEccC-------------------------------------------C
Q 035621          226 ------------------MGLALDPTETDFFAAGSD-------------------------------------------G  244 (387)
Q Consensus       226 ------------------~~~~~~~~~~~l~~~~~d-------------------------------------------g  244 (387)
                                        ..++++|++..+++...+                                           |
T Consensus       378 ~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g  457 (677)
T 1kb0_A          378 DGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFG  457 (677)
T ss_dssp             CTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEE
T ss_pred             cCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCcc
Confidence                              146888998888886542                                           6


Q ss_pred             cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc
Q 035621          245 LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL  315 (387)
Q Consensus       245 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  315 (387)
                      .|..||+.+++..        -..  .+..++....+..++..++.++.||.+++||..+++++..+....
T Consensus       458 ~l~A~D~~tG~~~--------W~~--~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~  518 (677)
T 1kb0_A          458 RLLAWDPVAQKAA--------WSV--EHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (677)
T ss_dssp             EEEEEETTTTEEE--------EEE--EESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             EEEEEeCCCCcEE--------eec--CCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence            6888888774322        221  223344455566778888999999999999999999999998654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.60  E-value=2.7e-12  Score=113.02  Aligned_cols=243  Identities=10%  Similarity=0.014  Sum_probs=159.6

Q ss_pred             CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC--cEEEEeCCCCce
Q 035621           40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG--NVYAISVPKGDI  117 (387)
Q Consensus        40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~  117 (387)
                      ....+++++++.+...    ...++.|+.||..++............. ++|+++++.|+++..++  .|.+++...+..
T Consensus       132 ~P~~la~d~~g~lyv~----d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAY----QRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CEEEEEECSTTEEEEE----ETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             CceEEEEeCCCCEEEE----ecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            4678899886544332    4567899999998776554444434444 99999999999888765  799999876654


Q ss_pred             eEEc----cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-----eccCCC--eEEEE
Q 035621          118 LRSF----SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-----VAHNDS--VTAIT  186 (387)
Q Consensus       118 ~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--i~~~~  186 (387)
                      ...+    ......+.+++++|++..|+.+..++.|+.||...            .. ...+     .++...  ...++
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~------------~~-~~~~~~~~~~g~~~~~P~~~ia  273 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT------------QE-VTLIKQLELSGSLGTNPGPYLI  273 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT------------CC-EEEEEECCCCSCCCCSSCCEEE
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC------------CC-EEEEecccccCCCCCCccccEE
Confidence            4333    22456678999999555566677788999999832            11 1111     111111  23899


Q ss_pred             EeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC---------------CceeEEEeCCCCCeEEEEc-cCCcEEEEe
Q 035621          187 CCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP---------------CAIMGLALDPTETDFFAAG-SDGLIYKGL  250 (387)
Q Consensus       187 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~-~dg~i~i~d  250 (387)
                      ++|+. +.++++-..++.|+.|+.... ........               .....++++|+|+++++-. .++.|+.|+
T Consensus       274 ~~p~~-g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~  351 (409)
T 3hrp_A          274 YYFVD-SNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD  351 (409)
T ss_dssp             EETTT-TEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred             EeCCC-CEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence            99853 477777777899999997643 22222221               3478999999999777777 889999999


Q ss_pred             ccccccccccccceeEee-----cccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621          251 LKYQSRQQMHKGQELVTL-----ANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  302 (387)
                      +..+......-.......     ....-.....++++++|.++++-..++.|+.+++
T Consensus       352 ~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          352 ILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            755321110000000000     0011246899999999888888888888888775

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.60  E-value=9.6e-14  Score=132.19  Aligned_cols=238  Identities=14%  Similarity=0.099  Sum_probs=153.8

Q ss_pred             ccccCCCcEEEeeCCC-----CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeee-ccccC---------CCCCeE
Q 035621            2 LHHLPCNEVILTSSPE-----GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAAS-HISPT---------TGSGSV   66 (387)
Q Consensus         2 l~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~---------~~d~~v   66 (387)
                      ++|||||++||.++.+     ..|++||+.+++.+... .+...+..++|+|+ ..... ..-..         .....|
T Consensus       168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v  245 (741)
T 1yr2_A          168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTV  245 (741)
T ss_dssp             EEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEE
T ss_pred             EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEE
Confidence            4799999999886543     46999999999876531 12222467899997 33222 11000         013358


Q ss_pred             EEEEccCCCc--ccccCC---CCCeeeEEeccCCCEEEEecCCC-----cEEEEeCCCC--ceeEEccCCCCCeEEEEEc
Q 035621           67 HLYNLWSSTP--LHNIPV---PEPVAPLATTADGSYLFTGGLSG-----NVYAISVPKG--DILRSFSAHDKPVSCLKIS  134 (387)
Q Consensus        67 ~vw~~~~~~~--~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~  134 (387)
                      ++|++.++..  ...+..   +..+..+.|+|||++|+..+.++     .|++||+.++  +....+..+...+.... +
T Consensus       246 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~  324 (741)
T 1yr2_A          246 WLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-D  324 (741)
T ss_dssp             EEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-E
T ss_pred             EEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-e
Confidence            9999877653  122222   23478999999999988876543     8999999877  41344544555555553 4


Q ss_pred             CCCCEEEEEeCC----CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeC
Q 035621          135 PDGSLLISGGDD----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRL  210 (387)
Q Consensus       135 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~  210 (387)
                      |+++.|+..+.+    +.|.+||+...          .......+..+...+..+.+. +  +.++++...|+..++|.+
T Consensus       325 ~dg~~l~~~s~~~~~~~~l~~~d~~~~----------~~~~~~l~~~~~~~l~~~~~~-~--~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          325 GVGDQLWFVSGDGAPLKKIVRVDLSGS----------TPRFDTVVPESKDNLESVGIA-G--NRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             EETTEEEEEECTTCTTCEEEEEECSSS----------SCEEEEEECCCSSEEEEEEEE-B--TEEEEEEEETTEEEEEEE
T ss_pred             ccCCEEEEEECCCCCCCEEEEEeCCCC----------ccccEEEecCCCCeEEEEEEE-C--CEEEEEEEECCEEEEEEE
Confidence            888888877654    45999988321          011222233344456666665 2  478888888998777755


Q ss_pred             C-CCcEEEEEec--CCceeEEEeCCCCCeEEEEc----cCCcEEEEeccccc
Q 035621          211 L-NGTHLSTVTF--PCAIMGLALDPTETDFFAAG----SDGLIYKGLLKYQS  255 (387)
Q Consensus       211 ~-~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~  255 (387)
                      . +++....+..  ...+..+.++|+++.++...    ..+.|++||+.++.
T Consensus       392 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          392 DLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             ETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             eCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            4 4666666663  46788999999988766432    35789999987754

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.59  E-value=4.1e-13  Score=115.04  Aligned_cols=236  Identities=11%  Similarity=0.020  Sum_probs=156.9

Q ss_pred             ccccCCCcEEEeeC----------CCCcEEEEeCCCCceeEeccCCC-------CCceeEEEcCccceeeeccccCCCCC
Q 035621            2 LHHLPCNEVILTSS----------PEGPITAYNPSSGAILAHFSGSR-------SPRRGLTFAGKPFIAASHISPTTGSG   64 (387)
Q Consensus         2 l~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~d~   64 (387)
                      +++||||+++++++          .++.|.+||..+++.+.++.-..       .....++++|++..+..  .....++
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyV--an~~~~~  160 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLF--YQFSPAP  160 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEE--EECSSSC
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEE--EEcCCCC
Confidence            57899999887775          35789999999999988875321       24678999997654321  1122478


Q ss_pred             eEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC-CceeEEccCC----CCCeE-EEEEc-CCC
Q 035621           65 SVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPK-GDILRSFSAH----DKPVS-CLKIS-PDG  137 (387)
Q Consensus        65 ~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~v~-~~~~~-~~~  137 (387)
                      .|.++|+.+++.+..+..++.  ...+....+.+++.+.||.+.+.++.+ ++.......+    ..++. ...|. ++|
T Consensus       161 ~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG  238 (386)
T 3sjl_D          161 AVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG  238 (386)
T ss_dssp             EEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             eEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence            999999999999888876542  222333445666777888888888876 5543222111    12222 24554 577


Q ss_pred             CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee----------ccCCCeEEEEEeeCCCCceEEEEeC------
Q 035621          138 SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV----------AHNDSVTAITCCIGSFNSIIISCSM------  201 (387)
Q Consensus       138 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~l~s~~~------  201 (387)
                      ++++ .+.+|.+++.|+...          .......+.          ........++++++.  +.++....      
T Consensus       239 ~~~~-vs~~g~V~v~d~~~~----------~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~--~~lyV~~~~~~~~~  305 (386)
T 3sjl_D          239 RLVW-PTYTGKIHQIDLSSG----------DAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL--DRIYLLVDQRDEWR  305 (386)
T ss_dssp             EEEE-EBTTSEEEEEECTTS----------SCEECCCEESSCHHHHHTTEEECSSSCEEEETTT--TEEEEEEEECCTTC
T ss_pred             cEEE-EeCCCEEEEEECCCC----------cceeecceeccccccccccccCCCcceeeECCCC--CeEEEEeccccccc
Confidence            6555 556899999998321          001111111          011233346667765  44444322      


Q ss_pred             ----CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCC-eEEEEc-cCCcEEEEecccc
Q 035621          202 ----DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTET-DFFAAG-SDGLIYKGLLKYQ  254 (387)
Q Consensus       202 ----d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~  254 (387)
                          ..+|.++|+.+++.+..+.....+..+++++|++ +|++.. .++.|.++|..+.
T Consensus       306 hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~  364 (386)
T 3sjl_D          306 HKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  364 (386)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             cCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence                2579999999999999999888999999999997 666654 4899999999873

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.58  E-value=4.8e-12  Score=109.80  Aligned_cols=232  Identities=9%  Similarity=-0.044  Sum_probs=158.0

Q ss_pred             ccccCCCcEEEeeC----------CCCcEEEEeCCCCceeEeccCC-------CCCceeEEEcCccceeeeccccCC--C
Q 035621            2 LHHLPCNEVILTSS----------PEGPITAYNPSSGAILAHFSGS-------RSPRRGLTFAGKPFIAASHISPTT--G   62 (387)
Q Consensus         2 l~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~--~   62 (387)
                      +++||||++++++.          .++.|.+||..+.+.+.++...       ......++++|++..+..    +.  .
T Consensus        71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v----~n~~~  146 (373)
T 2mad_H           71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLF----FQFAA  146 (373)
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEE----EecCC
Confidence            57999999998875          3678999999998888776432       123568899996554332    22  2


Q ss_pred             CCeEEEEEccCCCcccc-cCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEEcc-----CCCCCe-EEEEEc
Q 035621           63 SGSVHLYNLWSSTPLHN-IPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRSFS-----AHDKPV-SCLKIS  134 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v-~~~~~~  134 (387)
                      ++.|.++| .+++.+.. +..+..   +.+.|++ ..+++.+.||.+.++|. +++......     ....++ ....+.
T Consensus       147 ~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~  221 (373)
T 2mad_H          147 GPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             CCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence            58899999 99988887 766543   4455654 44556678999999999 877663321     111221 234566


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec----------cCCCeEEEEEeeCCCCceEEEEeC---
Q 035621          135 PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA----------HNDSVTAITCCIGSFNSIIISCSM---  201 (387)
Q Consensus       135 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~l~s~~~---  201 (387)
                      +++..++..+..+.+.+.|+...          ....+..+..          .......+.+++++  ..++.+..   
T Consensus       222 ~~~~~~~~~~~~~~v~vid~~~~----------~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~--~~lyV~~~~~~  289 (373)
T 2mad_H          222 NKSGRIVWPVYSGKILQADISAA----------GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS--DGIYLLTSEQS  289 (373)
T ss_pred             ecCCEEEEEcCCceEEEEeccCC----------cceEeeeeeecCCcccccceecCceEeEEECCCC--CEEEEEeccCC
Confidence            66665555557789999988321          0011111110          12233446777775  44444432   


Q ss_pred             -------CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCC-eEEEEc-cCCcEEEEecccc
Q 035621          202 -------DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTET-DFFAAG-SDGLIYKGLLKYQ  254 (387)
Q Consensus       202 -------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~  254 (387)
                             ++.|.++|+.+++.+.++........++|+|||+ .++++. .++.|.++|..+.
T Consensus       290 ~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~  351 (373)
T 2mad_H          290 AWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             cccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence                   3579999999999999998888899999999999 777776 4899999999874

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.57  E-value=6.5e-12  Score=109.74  Aligned_cols=273  Identities=12%  Similarity=0.142  Sum_probs=172.3

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCceeEeccCCC---------CCc-eeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621            7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSR---------SPR-RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP   76 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v-~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~   76 (387)
                      ++..+++++.++.|..+|.++|+.+..+....         ..+ ..+....+.      ++.++.++.|..+|..+++.
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~------v~v~~~~g~l~a~d~~tG~~  125 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGH------VYIGSEKAQVYALNTSDGTV  125 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTE------EEEEETTSEEEEEETTTCCE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCE------EEEEcCCCEEEEEECCCCCE
Confidence            45677888888999999999999877665421         112 222233322      23356789999999999998


Q ss_pred             ccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCe-----EEEEEcCCCCEEEEEeCCCcEEE
Q 035621           77 LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPV-----SCLKISPDGSLLISGGDDGVIAT  151 (387)
Q Consensus        77 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~i  151 (387)
                      +........+....... +..+++++.++.|..+|..+++.+..........     .....  .+..++.++.++.+..
T Consensus       126 ~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~  202 (376)
T 3q7m_A          126 AWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSA  202 (376)
T ss_dssp             EEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEE
T ss_pred             EEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEE
Confidence            87766554432221112 4578888889999999999999887765432211     11222  2456888888999999


Q ss_pred             EeCCcccccCCCCCCCCccceEeeeccCC-------CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCc
Q 035621          152 VPIFQLVDEHTDDKNPDDLMLQKFVAHND-------SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCA  224 (387)
Q Consensus       152 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  224 (387)
                      +|..            ++..+........       .+..+...|.-.+..++.++.++.+..+|..+++.+....... 
T Consensus       203 ~d~~------------tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-  269 (376)
T 3q7m_A          203 VLME------------QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-  269 (376)
T ss_dssp             EETT------------TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-
T ss_pred             EECC------------CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-
Confidence            9983            3333333221110       0000000111113567778889999999999999887766433 


Q ss_pred             eeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       225 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      ...+..  ++..+++++.++.++.+|..++.....        ........+.....  .+..|+.++.+|.|..+|..+
T Consensus       270 ~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~--------~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t  337 (376)
T 3q7m_A          270 VNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWT--------QSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVED  337 (376)
T ss_dssp             EEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEE--------ECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred             CCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEe--------ecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence            333333  467888888999999999987543221        11011111222222  246788888999999999999


Q ss_pred             ccEEEEeec
Q 035621          305 RQVVMVLKN  313 (387)
Q Consensus       305 ~~~~~~~~~  313 (387)
                      ++.+.....
T Consensus       338 G~~~~~~~~  346 (376)
T 3q7m_A          338 GRFVAQQKV  346 (376)
T ss_dssp             CCEEEEEEC
T ss_pred             CcEEEEEec
Confidence            999988765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.56  E-value=9.7e-12  Score=117.37  Aligned_cols=248  Identities=12%  Similarity=0.068  Sum_probs=161.0

Q ss_pred             CCCCCceeEEEcCccceeeeccc-cCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC---------
Q 035621           36 GSRSPRRGLTFAGKPFIAASHIS-PTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG---------  105 (387)
Q Consensus        36 ~~~~~v~~~~~~~~~~~~~~~~~-~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------  105 (387)
                      +|...+..++|+|++..++-.+- .|+....|++||+.+++.+...........++|+ |++.|+.+..+.         
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            35556888999998765553222 3455578999999999865432111124678999 999999887764         


Q ss_pred             ----cEEEEeCCCCce----eEEccC-CCCCeEEEEEcCCCCEEEEEeC----CCcEEEEeCCcccccCCCCCCCCccce
Q 035621          106 ----NVYAISVPKGDI----LRSFSA-HDKPVSCLKISPDGSLLISGGD----DGVIATVPIFQLVDEHTDDKNPDDLML  172 (387)
Q Consensus       106 ----~i~i~d~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~  172 (387)
                          .|++|++.++..    +..... |......+.|+||+++|+....    +..|+++|+..           .....
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-----------~~~~~  273 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ-----------ENAPL  273 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS-----------TTCCC
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC-----------CCCce
Confidence                399999977642    333333 4456788999999998765432    24789999832           11134


Q ss_pred             EeeeccCCCeEEEEEeeCCCCceEEEEeCC---CcEEEEeCCCCcE--EEEE-ecCCceeEEEeCCCCCeEEEEccCC--
Q 035621          173 QKFVAHNDSVTAITCCIGSFNSIIISCSMD---CTCKFWRLLNGTH--LSTV-TFPCAIMGLALDPTETDFFAAGSDG--  244 (387)
Q Consensus       173 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg--  244 (387)
                      ..+..+....... +++++ +.+++....+   +.|..+|+.++..  ...+ .+...+.  .|+++++.|+....++  
T Consensus       274 ~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~  349 (693)
T 3iuj_A          274 LTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDAT  349 (693)
T ss_dssp             EEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTE
T ss_pred             EEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCe
Confidence            4555565555554 45554 3455555443   6799999988754  2333 3444444  8999999888776643  


Q ss_pred             -cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC----CcEEEEECCCccEE
Q 035621          245 -LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED----GSVYIWEIEKRQVV  308 (387)
Q Consensus       245 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~  308 (387)
                       .|++|++...         ....+.....+.+..+.++++++.|+....+    +.|+.||+.+++..
T Consensus       350 ~~l~~~d~~g~---------~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          350 ARVEQFDYEGK---------RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             EEEEEECTTSC---------EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             eEEEEEECCCC---------eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence             6788887642         1122222344567788888888866655444    78999999887643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.56  E-value=3.6e-13  Score=115.60  Aligned_cols=281  Identities=9%  Similarity=-0.008  Sum_probs=177.1

Q ss_pred             cEEEeeCCCC----cEEEEeCCCCceeEeccCCCCCceeEEEcCccceee--ecc----ccCCCCCeEEEEEccCCCccc
Q 035621            9 EVILTSSPEG----PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAA--SHI----SPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         9 ~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~----~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      +.+++...++    .|.++|..+++.+.++.....+  .+.++|++....  +..    .-|..++.|.+||..+++.+.
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~  110 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA  110 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence            3445544455    7889999999999999766666  799999654332  110    011347899999999999998


Q ss_pred             ccCCC--------CCeeeEEeccCCCEEEEecC--CCcEEE--EeCCCCceeEEccCCCCCeEEEEEcCCC-CEEEEEeC
Q 035621           79 NIPVP--------EPVAPLATTADGSYLFTGGL--SGNVYA--ISVPKGDILRSFSAHDKPVSCLKISPDG-SLLISGGD  145 (387)
Q Consensus        79 ~~~~~--------~~v~~~~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~  145 (387)
                      .+..+        .....++++|||++++++..  +..+.+  +|+.+   +..+... +.   ..+.|++ ..+++.+.
T Consensus       111 ~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~  183 (368)
T 1mda_H          111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSC  183 (368)
T ss_dssp             EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCC
T ss_pred             EEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcC
Confidence            87643        35779999999999998864  457888  99877   4444321 11   1223444 34556677


Q ss_pred             CCcEEEEeCCcccccCCCCCCCCccce----EeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc--EEEEE
Q 035621          146 DGVIATVPIFQLVDEHTDDKNPDDLML----QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT--HLSTV  219 (387)
Q Consensus       146 dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~  219 (387)
                      |+.+.+.|+......       ..+..    ..+.....+.   . .++.  ..++..+. +.+.+.|+....  .+..+
T Consensus       184 dg~~~~vd~~~~~~~-------~~~v~~~~t~~i~vg~~P~---~-~~~~--~~~~~vs~-~~V~viD~~~~~~~v~~~~  249 (368)
T 1mda_H          184 PASLAASDLAAAPAA-------AGIVGAQCTGAQNCSSQAA---Q-ANYP--GMLVWAVA-SSILQGDIPAAGATMKAAI  249 (368)
T ss_dssp             TTSCEEEECCSSCCC-------CEECCCCSCTTSCBCSCCE---E-ETTT--TEEEECBS-SCCEEEECCSSCCEEECCC
T ss_pred             CCCEEEEECcccccc-------CCeEEEEeeeeeeCCCCcc---c-cccC--CEEEEEcC-CEEEEEECCCCcceEEEEE
Confidence            888888877320000       00000    0111122333   2 4443  44444445 899999986543  22222


Q ss_pred             ec-----------CCceeEEEeCCCCCeEEEEcc-C--------CcEEEEeccccccccccccceeEeecccccccEEEE
Q 035621          220 TF-----------PCAIMGLALDPTETDFFAAGS-D--------GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV  279 (387)
Q Consensus       220 ~~-----------~~~v~~~~~~~~~~~l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  279 (387)
                      ..           +.....++++|+++.++++.. .        +.+.++|..+..        .+..+..  ......+
T Consensus       250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~--------vv~~i~v--g~~p~gi  319 (368)
T 1mda_H          250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--------TSGPISN--GHDSDAI  319 (368)
T ss_dssp             CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--------EEECCEE--EEEECEE
T ss_pred             EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe--------EEEEEEC--CCCcceE
Confidence            21           112223789999999887644 2        356699998733        2222221  2258899


Q ss_pred             EEecCCC-EEEEEe-CCCcEEEEECCCccEEEEeecccCCCceeEEE
Q 035621          280 MMMNEGK-NLVSAA-EDGSVYIWEIEKRQVVMVLKNELAGSISEMVI  324 (387)
Q Consensus       280 ~~s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  324 (387)
                      +|+|||+ .+++.. .++.|.++|+.+++.+.++...  ..+.++.+
T Consensus       320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg--~~P~~i~~  364 (368)
T 1mda_H          320 IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD--KGPESLSV  364 (368)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC--SCCCEEEC
T ss_pred             EECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC--CCCCEEEe
Confidence            9999998 556666 5999999999999999999754  34555544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.54  E-value=3.4e-12  Score=107.64  Aligned_cols=223  Identities=9%  Similarity=0.097  Sum_probs=148.8

Q ss_pred             cccCC-CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            3 HHLPC-NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         3 ~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      .|+|+ +.++++...++.|+.||..+++. ..+. ....+.++++++++.+...      .++.|.+||.++++......
T Consensus        19 ~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~------~~~~l~~~d~~~g~~~~~~~   90 (297)
T 3g4e_A           19 VWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT------IGTKFCALNWKEQSAVVLAT   90 (297)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE------ETTEEEEEETTTTEEEEEEE
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE------ECCeEEEEECCCCcEEEEEe
Confidence            57885 56777777889999999987765 2332 3466899999997654432      25689999998775433222


Q ss_pred             C-----CCCeeeEEeccCCCEEEEecC-----------CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE-EEe
Q 035621           82 V-----PEPVAPLATTADGSYLFTGGL-----------SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI-SGG  144 (387)
Q Consensus        82 ~-----~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~  144 (387)
                      .     ...+..++++|+|++.++...           .+.|..++. .++... +..+....+.++|+|+++.|+ +.+
T Consensus        91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~  168 (297)
T 3g4e_A           91 VDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP-DHHVKK-YFDQVDISNGLDWSLDHKIFYYIDS  168 (297)
T ss_dssp             CCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT-TSCEEE-EEEEESBEEEEEECTTSCEEEEEEG
T ss_pred             cCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC-CCCEEE-EeeccccccceEEcCCCCEEEEecC
Confidence            1     234788999999996665422           234444443 233332 323344568999999998665 455


Q ss_pred             CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC-C
Q 035621          145 DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-C  223 (387)
Q Consensus       145 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~  223 (387)
                      .++.|..|++...    .... ........+..+......+++.++  +++.++....+.|..||..+++.+..+..+ .
T Consensus       169 ~~~~i~~~~~d~~----~G~~-~~~~~~~~~~~~~~~p~g~~~d~~--G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~  241 (297)
T 3g4e_A          169 LSYSVDAFDYDLQ----TGQI-SNRRSVYKLEKEEQIPDGMCIDAE--GKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD  241 (297)
T ss_dssp             GGTEEEEEEECTT----TCCE-EEEEEEEECCGGGCEEEEEEEBTT--SCEEEEEETTTEEEEECTTTCCEEEEEECSSS
T ss_pred             CCCcEEEEeccCC----CCcc-cCcEEEEECCCCCCCCCeeEECCC--CCEEEEEcCCCEEEEEcCCCceEEEEEECCCC
Confidence            6788999987210    0000 001122223334456778888766  478887777889999999999999988865 6


Q ss_pred             ceeEEEeC-CCCCeEEEEcc
Q 035621          224 AIMGLALD-PTETDFFAAGS  242 (387)
Q Consensus       224 ~v~~~~~~-~~~~~l~~~~~  242 (387)
                      .+++++|. |+++.|++++.
T Consensus       242 ~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          242 KTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             BEEEEEEESGGGCEEEEEEB
T ss_pred             CceEEEEeCCCCCEEEEEcC
Confidence            89999998 88888777665

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.53  E-value=2.7e-11  Score=102.05  Aligned_cols=225  Identities=11%  Similarity=0.102  Sum_probs=145.4

Q ss_pred             CceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee
Q 035621           40 PRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL  118 (387)
Q Consensus        40 ~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  118 (387)
                      -..+..|+++ ..+..    +...++.|..||..+++. ..+.....+.+++++++|+++++ . ++.|.+||..+++..
T Consensus        14 ~~Egp~w~~~~~~l~~----~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLF----VDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             BEEEEEEETTTTEEEE----EETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred             cccCCeEECCCCEEEE----EECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence            3567788873 22222    245678999999987654 44556678999999999995554 3 567999999887654


Q ss_pred             EEccC----CCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEE
Q 035621          119 RSFSA----HDKPVSCLKISPDGSLLISGGDD---------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAI  185 (387)
Q Consensus       119 ~~~~~----~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  185 (387)
                      .....    ....++.++++|+|+++++...+         ..-.+|.+..           .. ....+..+....+.+
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~-----------~g-~~~~~~~~~~~pngi  154 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP-----------DH-HVKKYFDQVDISNGL  154 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT-----------TS-CEEEEEEEESBEEEE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC-----------CC-CEEEEeeccccccce
Confidence            33221    12357899999999966654321         2334554411           11 222233344456789


Q ss_pred             EEeeCCCCceEEEEeCCCcEEEEeC--CCCcEE--EEE---e-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621          186 TCCIGSFNSIIISCSMDCTCKFWRL--LNGTHL--STV---T-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ  257 (387)
Q Consensus       186 ~~~~~~~~~~l~s~~~d~~i~iwd~--~~~~~~--~~~---~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  257 (387)
                      +|+|++ ..++++.+.++.|..||+  .++...  +.+   . ....+..++++++|++.++....+.|..||..++.  
T Consensus       155 ~~spdg-~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~--  231 (297)
T 3g4e_A          155 DWSLDH-KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK--  231 (297)
T ss_dssp             EECTTS-CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC--
T ss_pred             EEcCCC-CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce--
Confidence            999875 234456666889999987  455432  122   1 23567899999999877777777889999987532  


Q ss_pred             cccccceeEeecccccccEEEEEEe-cCCCEEEEEeC
Q 035621          258 QMHKGQELVTLANRHDGVVVSVMMM-NEGKNLVSAAE  293 (387)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~  293 (387)
                            .+. ....+...+++++|. |+++.|..++.
T Consensus       232 ------~~~-~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          232 ------RLQ-TVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             ------EEE-EEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             ------EEE-EEECCCCCceEEEEeCCCCCEEEEEcC
Confidence                  222 222345679999998 88876655443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.52  E-value=4.9e-12  Score=118.45  Aligned_cols=276  Identities=12%  Similarity=0.117  Sum_probs=176.3

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCceeEeccCC-C----CCcee-EEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            7 CNEVILTSSPEGPITAYNPSSGAILAHFSGS-R----SPRRG-LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~----~~v~~-~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++..+++++.|+.|..+|..+|+.+.++..+ .    ..+.+ .....+..+....-.-.+.++.|+.+|..+++.+..+
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            4567888888999999999999998887654 2    11211 1122222222110000013799999999999887665


Q ss_pred             CCCCC---------------------------------eeeEEeccCCCEEEEecCCC-------------------cEE
Q 035621           81 PVPEP---------------------------------VAPLATTADGSYLFTGGLSG-------------------NVY  108 (387)
Q Consensus        81 ~~~~~---------------------------------v~~~~~~~~~~~l~~~~~dg-------------------~i~  108 (387)
                      .....                                 ...+++.|++..++.+..++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            42111                                 13578889888998887664                   499


Q ss_pred             EEeCCCCceeEEccC--CC-------CCeEEEEEcCCC---CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee
Q 035621          109 AISVPKGDILRSFSA--HD-------KPVSCLKISPDG---SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV  176 (387)
Q Consensus       109 i~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  176 (387)
                      .+|..+|+.+..++.  |.       ....-+....+|   ..++.++.+|.++++|...            ++.+..+.
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t------------G~~l~~~~  354 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN------------GKFISAKN  354 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT------------CCEEEEEE
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC------------CCEecccc
Confidence            999999999877653  21       122223333467   6899999999999999843            22222111


Q ss_pred             ccC-----------CC------------------------eEEEEEeeCCCCceEEEEeC--------------------
Q 035621          177 AHN-----------DS------------------------VTAITCCIGSFNSIIISCSM--------------------  201 (387)
Q Consensus       177 ~~~-----------~~------------------------i~~~~~~~~~~~~~l~s~~~--------------------  201 (387)
                      ...           .+                        -..++++|+.  .++++...                    
T Consensus       355 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~g~~~~~  432 (677)
T 1kb0_A          355 FVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT--GLVYLPAQNVPVNLMDDKKWEFNQAGPG  432 (677)
T ss_dssp             SSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT--TEEEEEEEECCCEEEECTTCCTTCCCTT
T ss_pred             ccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC--CEEEEeChhcceeeeccccccccccccc
Confidence            000           00                        0145666654  55555432                    


Q ss_pred             -----------------------CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccc
Q 035621          202 -----------------------DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQ  258 (387)
Q Consensus       202 -----------------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  258 (387)
                                             .+.|..||+.+++.+..+.+..++....+..++..+++++.||.+++||..+++   
T Consensus       433 ~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~---  509 (677)
T 1kb0_A          433 KPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE---  509 (677)
T ss_dssp             STTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC---
T ss_pred             ccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc---
Confidence                                   278999999999999999877766666777788899999999999999999844   


Q ss_pred             ccccceeEeecccccccEEEEEEecCCCEEE-EEeC----------------CCcEEEEECCC
Q 035621          259 MHKGQELVTLANRHDGVVVSVMMMNEGKNLV-SAAE----------------DGSVYIWEIEK  304 (387)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~----------------dg~i~iwd~~~  304 (387)
                           .+..+..++...-.-+.|..+|+.++ +.+.                .+.+..|.+..
T Consensus       510 -----~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          510 -----KLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             -----EEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             -----eeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence                 33333223333333455677887444 3222                35777777764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.52  E-value=4.5e-12  Score=107.34  Aligned_cols=218  Identities=13%  Similarity=0.114  Sum_probs=146.5

Q ss_pred             cccCCCc-EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            3 HHLPCNE-VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         3 ~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      .|+|+|+ +++++..++.|..|+. +++ ...+..+...+..+++++++.+...    ...++.|.+|+.+ ++......
T Consensus        51 ~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~----~~~~~~v~~~~~~-g~~~~~~~  123 (305)
T 3dr2_A           51 AWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHC----EHGRRAITRSDAD-GQAHLLVG  123 (305)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEE----ETTTTEEEEECTT-SCEEEEEC
T ss_pred             eEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEE----ECCCCEEEEECCC-CCEEEEEe
Confidence            5889988 6778888899999997 555 3445556667899999996654432    3455789999875 44322211


Q ss_pred             -----CCCCeeeEEeccCCCEEEE----ecC-------------CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE
Q 035621           82 -----VPEPVAPLATTADGSYLFT----GGL-------------SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL  139 (387)
Q Consensus        82 -----~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  139 (387)
                           ....+..+++.++|++.++    |..             .+.|..+|..+++.....  .......++|+|+++.
T Consensus       124 ~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~  201 (305)
T 3dr2_A          124 RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQT  201 (305)
T ss_dssp             EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSE
T ss_pred             ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCE
Confidence                 1134778999999998876    432             256888887677654433  3456788999999998


Q ss_pred             EEEEeCC------CcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC
Q 035621          140 LISGGDD------GVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN  212 (387)
Q Consensus       140 l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  212 (387)
                      |+.+...      +.|..|++....          ......+ .........+++.+++  ++. .+..+ .|.+|+. +
T Consensus       202 lyv~~~~~~~~~~~~i~~~~~~~~~----------l~~~~~~~~~~~~~pdgi~~d~~G--~lw-v~~~~-gv~~~~~-~  266 (305)
T 3dr2_A          202 LYVSQTPEQGHGSVEITAFAWRDGA----------LHDRRHFASVPDGLPDGFCVDRGG--WLW-SSSGT-GVCVFDS-D  266 (305)
T ss_dssp             EEEEECCC---CCCEEEEEEEETTE----------EEEEEEEECCSSSCCCSEEECTTS--CEE-ECCSS-EEEEECT-T
T ss_pred             EEEEecCCcCCCCCEEEEEEecCCC----------ccCCeEEEECCCCCCCeEEECCCC--CEE-EecCC-cEEEECC-C
Confidence            8777665      689999873210          0000111 1122334556776664  644 44444 4999997 6


Q ss_pred             CcEEEEEecCCceeEEEeCCCCCeEEEEccCC
Q 035621          213 GTHLSTVTFPCAIMGLALDPTETDFFAAGSDG  244 (387)
Q Consensus       213 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  244 (387)
                      ++.+..+..+..+.+++|.|+++.|++++.++
T Consensus       267 g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          267 GQLLGHIPTPGTASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             SCEEEEEECSSCCCEEEECTTSCEEEEEETTE
T ss_pred             CCEEEEEECCCceeEEEEeCCCCEEEEEcCCe
Confidence            77888888777899999999999888887754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.51  E-value=1.4e-12  Score=112.43  Aligned_cols=260  Identities=11%  Similarity=0.073  Sum_probs=163.6

Q ss_pred             ccccCCCcEEEeeC--CCCcEEEEeCCCCceeEec-------cCCCCCceeEEEcCccceeeeccccCC----CCCeEEE
Q 035621            2 LHHLPCNEVILTSS--PEGPITAYNPSSGAILAHF-------SGSRSPRRGLTFAGKPFIAASHISPTT----GSGSVHL   68 (387)
Q Consensus         2 l~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~----~d~~v~v   68 (387)
                      ++++|+|+++++..  .++.++||.+.+++.. .+       ..|...+..+++++++.+...-   .+    .++.|.+
T Consensus        22 va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D---~g~~~~~~~~i~~   97 (343)
T 2qe8_A           22 ITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLD---NGNQSKSVPKLVA   97 (343)
T ss_dssp             EEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEE---CHHHHTSCCEEEE
T ss_pred             EEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEc---CCCCcCCCCeEEE
Confidence            56889999988853  2343555655455533 22       2244568999999865433210   11    1578999


Q ss_pred             EEccCCCcccccCCC-------CCeeeEEeccCCCEEE-Eec---CCCcEEEEeCCCCceeEEccCCCCCeE-EEEEcCC
Q 035621           69 YNLWSSTPLHNIPVP-------EPVAPLATTADGSYLF-TGG---LSGNVYAISVPKGDILRSFSAHDKPVS-CLKISPD  136 (387)
Q Consensus        69 w~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~-~~~---~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~  136 (387)
                      ||+.+++.+..+..+       ..+..+++++++..++ +..   .++.|.+||+.+++..+.+..|..... ...+.++
T Consensus        98 ~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~  177 (343)
T 2qe8_A           98 WDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVID  177 (343)
T ss_dssp             EETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEET
T ss_pred             EECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeEC
Confidence            999988866555432       3468899998655554 443   578899999998887777755432110 1334456


Q ss_pred             CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC-cEEEEeCC---C
Q 035621          137 GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC-TCKFWRLL---N  212 (387)
Q Consensus       137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~-~i~iwd~~---~  212 (387)
                      +..+.+.+.++.++.|..                          .+..++++|++  +.|+.+..++ .+..++..   .
T Consensus       178 g~~~~~~~~~g~~~~~~~--------------------------~~~gia~s~dg--~~ly~~~~~~~~l~~~~~~~~~~  229 (343)
T 2qe8_A          178 GVPVQIGQPDGTVIRPHL--------------------------GVNGIVLDAEN--EWLYLSPMHSTSMYRIKSADLSN  229 (343)
T ss_dssp             TEECBEECTTSCEECCCC--------------------------CEEEEEECTTS--CEEEEEESSCSEEEEEEHHHHTC
T ss_pred             CEEEEeccCCCceeceec--------------------------ccceeEeccCC--CEEEEEeCCCCeEEEEEHHHhcC
Confidence            766767777777655522                          35678998874  7777776655 45555432   1


Q ss_pred             Cc--------EEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621          213 GT--------HLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE  284 (387)
Q Consensus       213 ~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  284 (387)
                      +.        .+...........++++++|.++++...++.|.+||...+..      ..+..  ..+...+.+++|.++
T Consensus       230 ~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~------~~~~~--~~~~~~p~~va~~~~  301 (343)
T 2qe8_A          230 LQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY------KLLVT--DEKLSWTDSFNFGSD  301 (343)
T ss_dssp             TTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE------EEEEE--CGGGSCEEEEEECTT
T ss_pred             CCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE------EEEEE--CCceecCCeeEECCC
Confidence            11        012222334567899999999888888899999999843211      11111  123456899999999


Q ss_pred             CCEEEEEeCCCcEEEEE
Q 035621          285 GKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       285 ~~~l~s~~~dg~i~iwd  301 (387)
                      +.++++.+..+.+.+|.
T Consensus       302 g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          302 GYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             SCEEEEECCGGGSGGGB
T ss_pred             CcEEEEeCccccccccc
Confidence            98888876555444443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.48  E-value=9.6e-12  Score=108.57  Aligned_cols=244  Identities=9%  Similarity=0.018  Sum_probs=159.7

Q ss_pred             ccccCCCcEEEeeC----------CCCcEEEEeCCCCceeEeccCC-------CCCceeEEEcCccceeeeccccCCCCC
Q 035621            2 LHHLPCNEVILTSS----------PEGPITAYNPSSGAILAHFSGS-------RSPRRGLTFAGKPFIAASHISPTTGSG   64 (387)
Q Consensus         2 l~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~d~   64 (387)
                      +.+||||++|+++.          .++.|.++|..+++.+.++.-.       ......+.++|++..+..  .....++
T Consensus       123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV--~n~~~~~  200 (426)
T 3c75_H          123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLF--YQFSPAP  200 (426)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEE--EECSSSC
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEE--EecCCCC
Confidence            57899999888876          3678999999999998877521       234678999996643321  0012368


Q ss_pred             eEEEEEccCCCcccccCCCCCeeeEEeccCC-CEEEEecCCCcEEEEeCCCCceeEE----ccCCCCCe-EEEEEcCCCC
Q 035621           65 SVHLYNLWSSTPLHNIPVPEPVAPLATTADG-SYLFTGGLSGNVYAISVPKGDILRS----FSAHDKPV-SCLKISPDGS  138 (387)
Q Consensus        65 ~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~v-~~~~~~~~~~  138 (387)
                      .|.+.|+.+++.+..+..+..   ....|++ ..+++.+.||.+.+.+..+++....    +.....++ ..+.|.+++.
T Consensus       201 ~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~  277 (426)
T 3c75_H          201 AVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG  277 (426)
T ss_dssp             EEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred             eEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence            999999999998888776542   2334433 4555666788888888765554422    22112221 2356889988


Q ss_pred             EEEEEeCCCcEEEEeCCcccccCCCC--C-CCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe---------CCCcEE
Q 035621          139 LLISGGDDGVIATVPIFQLVDEHTDD--K-NPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS---------MDCTCK  206 (387)
Q Consensus       139 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~---------~d~~i~  206 (387)
                      .++..+..+.+.+.|+..........  . ........ +  .......+++++++ ++++++..         .++.|.
T Consensus       278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g-~--~p~g~~~va~s~dg-~rlyVa~~~~~~gthk~~s~~Vs  353 (426)
T 3c75_H          278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD-W--RPGGWQQTAYHRQS-DRIYLLVDQRDEWKHKAASRFVV  353 (426)
T ss_dssp             EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT-E--EECSSSCEEEEGGG-TEEEEEEEECCTTCTTSCEEEEE
T ss_pred             EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc-c--ccCCceeeEEcCCC-CEEEEEecccccccccCCCCEEE
Confidence            87777888999999983210000000  0 00000000 0  11112235778875 23344332         135799


Q ss_pred             EEeCCCCcEEEEEecCCceeEEEeCCCCC-eEEEEc-cCCcEEEEecccc
Q 035621          207 FWRLLNGTHLSTVTFPCAIMGLALDPTET-DFFAAG-SDGLIYKGLLKYQ  254 (387)
Q Consensus       207 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~  254 (387)
                      ++|+.+.+.+.++........++|+||++ ++++.. .++.|.++|..+.
T Consensus       354 VID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          354 VLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             EEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             EEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence            99999999999999877899999999999 888887 4999999999884

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.48  E-value=1.2e-12  Score=112.76  Aligned_cols=171  Identities=12%  Similarity=0.124  Sum_probs=130.7

Q ss_pred             CceeEEEcCccceeeeccccCCCCCeEEEEEccCCC-----------cccccCCCCCeeeEEeccCCCEEEEecCCCcEE
Q 035621           40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST-----------PLHNIPVPEPVAPLATTADGSYLFTGGLSGNVY  108 (387)
Q Consensus        40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  108 (387)
                      +++.+++++...+.+.    ++.+ .+.+|++++.+           ......++. |+.++|  ++++|+++ .++.|+
T Consensus        39 ~~nlLais~~~gll~a----~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSKSLFVA----ASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALY  109 (388)
T ss_dssp             CCBCEEEETTTTEEEE----EETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEE
T ss_pred             cccEEEEcCCCCEEEE----eCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEE
Confidence            5889999985544432    5555 56669875432           223344667 999999  99999999 889999


Q ss_pred             EEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEe
Q 035621          109 AISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC  188 (387)
Q Consensus       109 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  188 (387)
                      +||+.+.........|..++.++.+.+..  +++++.||.|.+||+.            .....    .+...|++++|+
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~------------~~~~~----~~~~~Vs~v~WS  171 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLR------------TKSTK----QLAQNVTSFDVT  171 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETT------------TCCEE----EEEESEEEEEEC
T ss_pred             EEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEcc------------CCccc----cccCCceEEEEc
Confidence            99998877666677788889988887653  8889999999999993            22222    145689999999


Q ss_pred             eCCCCceEEEEeCCCcEEEEeCCCCcE--EEEE------e----cCCceeEEEeCCCCCeEEEEc
Q 035621          189 IGSFNSIIISCSMDCTCKFWRLLNGTH--LSTV------T----FPCAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       189 ~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~------~----~~~~v~~~~~~~~~~~l~~~~  241 (387)
                      |.+    ++.|..||++++|+...++.  ..++      .    +...|.++.|.+++.++++-.
T Consensus       172 pkG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          172 NSQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             SSE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CCc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            984    67889999999999887775  5566      2    457799999999999888743

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.46  E-value=4.9e-11  Score=101.88  Aligned_cols=221  Identities=11%  Similarity=0.086  Sum_probs=143.7

Q ss_pred             cccCC-CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            3 HHLPC-NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         3 ~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      .|+|+ +.++++...++.|..||..+++.. .+. ....+.++++++++.+...     + +..|.+||..+++......
T Consensus        55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~-----~-~~gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           55 TFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-----S-DDGLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-----E-TTEEEEEETTTCCEEEEEC
T ss_pred             eEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEE-----E-CCCEEEEECCCCcEEEEee
Confidence            58887 556777777889999999877643 333 3456899999987654432     2 3449999988776533222


Q ss_pred             C-----CCCeeeEEeccCCCEEEEecC------CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEE-eCCCcE
Q 035621           82 V-----PEPVAPLATTADGSYLFTGGL------SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISG-GDDGVI  149 (387)
Q Consensus        82 ~-----~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i  149 (387)
                      .     ...+..++++|+|++.++...      .+.|..++  +++... +..+......++|+|+++.++.+ +.++.|
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I  203 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRL  203 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence            1     135889999999987665432      24566666  454332 32233457899999999876554 457889


Q ss_pred             EEEeCC--cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC-Ccee
Q 035621          150 ATVPIF--QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-CAIM  226 (387)
Q Consensus       150 ~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~  226 (387)
                      .+||+.  .....      ........+.........+++.++  +++.++...++.|..||. +++.+..+..+ ..+.
T Consensus       204 ~~~d~~~~~Gl~~------~~~~~~~~~~~~~~~p~gi~~d~~--G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~  274 (326)
T 2ghs_A          204 MRVPLDARTGLPT------GKAEVFIDSTGIKGGMDGSVCDAE--GHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTT  274 (326)
T ss_dssp             EEEEBCTTTCCBS------SCCEEEEECTTSSSEEEEEEECTT--SCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEE
T ss_pred             EEEEcccccCCcc------cCceEEEECCCCCCCCCeeEECCC--CCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcE
Confidence            999973  10000      001112222223345567777665  477777666788999998 67777777754 4699


Q ss_pred             EEEeC-CCCCeEEEEccC
Q 035621          227 GLALD-PTETDFFAAGSD  243 (387)
Q Consensus       227 ~~~~~-~~~~~l~~~~~d  243 (387)
                      +++|. |+++.|++++..
T Consensus       275 ~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          275 CPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EEEEESTTSCEEEEEEBC
T ss_pred             EEEEecCCCCEEEEEecC
Confidence            99998 888877766543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.46  E-value=2.7e-11  Score=113.64  Aligned_cols=273  Identities=12%  Similarity=0.115  Sum_probs=164.1

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCceeEeccCC--CCCceeEEEcC----ccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            7 CNEVILTSSPEGPITAYNPSSGAILAHFSGS--RSPRRGLTFAG----KPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~----~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++..+++++.|+.|+.+|..+|+.+..+...  ......+...|    +..+....-.-.+.++.|..||..+|+.+..+
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            4567888889999999999999998777542  11111111122    22211110000014789999999999987655


Q ss_pred             CC-C-C------------------------------CeeeEEeccCCCEEEEecCCCc-------------------EEE
Q 035621           81 PV-P-E------------------------------PVAPLATTADGSYLFTGGLSGN-------------------VYA  109 (387)
Q Consensus        81 ~~-~-~------------------------------~v~~~~~~~~~~~l~~~~~dg~-------------------i~i  109 (387)
                      .. + .                              ....+++.|++..++.+..++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            41 0 0                              0125788898889999887763                   999


Q ss_pred             EeCCCCceeEEccC--CC-------CCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCcccccCCCCCCC----------
Q 035621          110 ISVPKGDILRSFSA--HD-------KPVSCLKISPDGS---LLISGGDDGVIATVPIFQLVDEHTDDKNP----------  167 (387)
Q Consensus       110 ~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------  167 (387)
                      +|..+|+.+..++.  |.       .++.......+|+   .++.++.+|.++++|..............          
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~  359 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK  359 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence            99999999887753  21       1222222223554   78899999999999984321110000000          


Q ss_pred             Cccc---------------eEeeeccCC--CeEEEEEeeCCCCceEEEEeC-----------------------------
Q 035621          168 DDLM---------------LQKFVAHND--SVTAITCCIGSFNSIIISCSM-----------------------------  201 (387)
Q Consensus       168 ~~~~---------------~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~-----------------------------  201 (387)
                      ...+               .....+..+  .-..++++|..  .++++...                             
T Consensus       360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  437 (689)
T 1yiq_A          360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT--GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG  437 (689)
T ss_dssp             TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT--TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred             CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC--CEEEEeccccceeeeeccccccccccccccccCcccc
Confidence            0000               000000000  01125566653  44444321                             


Q ss_pred             ----------------CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccccee
Q 035621          202 ----------------DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQEL  265 (387)
Q Consensus       202 ----------------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  265 (387)
                                      +|.|+.||+.+++.+..+....+.....+...+..++.++.||.++.||.++++        .+
T Consensus       438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~--------~l  509 (689)
T 1yiq_A          438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE--------KL  509 (689)
T ss_dssp             CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC--------EE
T ss_pred             ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCc--------cc
Confidence                            378999999999999998876666555677788899999999999999999844        33


Q ss_pred             EeecccccccEEEEEEecCCCEEE
Q 035621          266 VTLANRHDGVVVSVMMMNEGKNLV  289 (387)
Q Consensus       266 ~~~~~~~~~~v~~~~~s~~~~~l~  289 (387)
                      -.+..++.....-+.|..+|+.++
T Consensus       510 w~~~~~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          510 WEQPAASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             EEEECSSCCCSCCEEEEETTEEEE
T ss_pred             eeeeCCCCcccCceEEEECCEEEE
Confidence            333222222223466678887443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.45  E-value=1.3e-10  Score=98.26  Aligned_cols=223  Identities=10%  Similarity=0.001  Sum_probs=146.3

Q ss_pred             CCCCeeeEEeccCCC-EEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           82 VPEPVAPLATTADGS-YLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                      .........|+|+++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|..|+..     
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-----  115 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-----  115 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-----
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-----
Confidence            334567889999998 5667777889999997 454 34455566778999999999977666666889999862     


Q ss_pred             CCCCCCCCccceEeeec-----cCCCeEEEEEeeCCCCceEEE----EeC-------------CCcEEEEeCCCCcEEEE
Q 035621          161 HTDDKNPDDLMLQKFVA-----HNDSVTAITCCIGSFNSIIIS----CSM-------------DCTCKFWRLLNGTHLST  218 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~l~s----~~~-------------d~~i~iwd~~~~~~~~~  218 (387)
                              +. ...+..     ....+..+++.+++  +++++    |..             .+.|..||..+++....
T Consensus       116 --------g~-~~~~~~~~~~~~~~~~~~i~~d~dG--~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~  184 (305)
T 3dr2_A          116 --------GQ-AHLLVGRYAGKRLNSPNDLIVARDG--AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM  184 (305)
T ss_dssp             --------SC-EEEEECEETTEECSCCCCEEECTTS--CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred             --------CC-EEEEEeccCCCccCCCCCEEECCCC--CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence                    11 111111     11345678887764  77776    332             25678888766665443


Q ss_pred             EecCCceeEEEeCCCCCeEEEEccC------CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621          219 VTFPCAIMGLALDPTETDFFAAGSD------GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA  292 (387)
Q Consensus       219 ~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  292 (387)
                      . .......++|+|+++.|+++...      +.|++|++......    ....  +.......+..++++++|++.++ +
T Consensus       185 ~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~----~~~~--~~~~~~~~pdgi~~d~~G~lwv~-~  256 (305)
T 3dr2_A          185 A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALH----DRRH--FASVPDGLPDGFCVDRGGWLWSS-S  256 (305)
T ss_dssp             E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEE----EEEE--EECCSSSCCCSEEECTTSCEEEC-C
T ss_pred             e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCcc----CCeE--EEECCCCCCCeEEECCCCCEEEe-c
Confidence            3 34567889999999988887665      78999998753200    0111  11112344567899999995544 4


Q ss_pred             CCCcEEEEECCCccEEEEeecccCCCceeEEEEecCCCceeeEEE
Q 035621          293 EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVV  337 (387)
Q Consensus       293 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  337 (387)
                      .+ .|.+|+. +++.+..+..+.  .+++++|.   ++...+|+.
T Consensus       257 ~~-gv~~~~~-~g~~~~~~~~~~--~~~~~~f~---~d~~~L~it  294 (305)
T 3dr2_A          257 GT-GVCVFDS-DGQLLGHIPTPG--TASNCTFD---QAQQRLFIT  294 (305)
T ss_dssp             SS-EEEEECT-TSCEEEEEECSS--CCCEEEEC---TTSCEEEEE
T ss_pred             CC-cEEEECC-CCCEEEEEECCC--ceeEEEEe---CCCCEEEEE
Confidence            45 4999998 577777776543  57888887   344445543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.44  E-value=1.5e-10  Score=101.12  Aligned_cols=256  Identities=14%  Similarity=0.123  Sum_probs=161.3

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCe
Q 035621            7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPV   86 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v   86 (387)
                      ++..++.++.++.|..+|..+|+.+.................+      .++.++.++.+..+|..+++.+.......++
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~------~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~  175 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDG------LVLIHTSNGQLQALNEADGAVKWTVNLDMPS  175 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETT------EEEEECTTSEEEEEETTTCCEEEEEECCC--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECC------EEEEEcCCCeEEEEECCCCcEEEEEeCCCCc
Confidence            3456777888899999999999988776544332222233332      2333567899999999999888777654433


Q ss_pred             ------eeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCC-------eEEEEEcC--CCCEEEEEeCCCcEEE
Q 035621           87 ------APLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKP-------VSCLKISP--DGSLLISGGDDGVIAT  151 (387)
Q Consensus        87 ------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------v~~~~~~~--~~~~l~~~~~dg~i~i  151 (387)
                            ......  +..++++..++.+..+|..+++.+.........       +..+...|  .+..++.++.++.+..
T Consensus       176 ~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          176 LSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTA  253 (376)
T ss_dssp             ---CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEE
T ss_pred             eeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEE
Confidence                  222222  457888888999999999999987766432110       00011111  3457888888999999


Q ss_pred             EeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cC-CceeEEE
Q 035621          152 VPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FP-CAIMGLA  229 (387)
Q Consensus       152 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~-~~v~~~~  229 (387)
                      +|.            .++..+....  ......+...    +..++.++.++.|..+|..+++.+.... .. .......
T Consensus       254 ~d~------------~tG~~~w~~~--~~~~~~~~~~----~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~  315 (376)
T 3q7m_A          254 LDL------------RSGQIMWKRE--LGSVNDFIVD----GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPV  315 (376)
T ss_dssp             EET------------TTCCEEEEEC--CCCEEEEEEE----TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCE
T ss_pred             EEC------------CCCcEEeecc--CCCCCCceEE----CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCE
Confidence            998            3344333322  2233334332    3577788889999999999999887775 22 2222222


Q ss_pred             eCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEE-EEEecCCCEEEEEeCCCcEEEEE
Q 035621          230 LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS-VMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       230 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      .  .+..+++++.+|.++.+|..++....        ... .....+.. ...  .+..|+.++.+|.|+.|+
T Consensus       316 ~--~~~~l~v~~~~g~l~~~d~~tG~~~~--------~~~-~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          316 L--YNGNLVVGDSEGYLHWINVEDGRFVA--------QQK-VDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             E--ETTEEEEECTTSEEEEEETTTCCEEE--------EEE-CCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             E--ECCEEEEEeCCCeEEEEECCCCcEEE--------EEe-cCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            2  35789999999999999998854321        111 11111211 122  245778888999999987

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.43  E-value=5.1e-11  Score=101.98  Aligned_cols=260  Identities=15%  Similarity=0.142  Sum_probs=166.1

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCC-ee
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEP-VA   87 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~-v~   87 (387)
                      ..|..++.++.|..|| .+++....+..+...+.++...+++.+..     ++.+  +..+|. +++....+..... ..
T Consensus        31 g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-----~t~~--l~~~d~-~g~~~~~~~~~~~~~~  101 (330)
T 3hxj_A           31 GTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-----GSDK--VYAINP-DGTEKWRFDTKKAIVS  101 (330)
T ss_dssp             SCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-----SSCE--EEEECC-CGGGGGGSCC-----C
T ss_pred             CeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-----ecCc--EEEECC-CCcEEEEEECCCCccc
Confidence            3567777888999999 88988776654444456677765443322     3444  888885 6666666654433 23


Q ss_pred             eEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621           88 PLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP  167 (387)
Q Consensus        88 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  167 (387)
                      ...+.  +..+.+++.++.|..+|.. ++.......+...+.++...+++. +..++.++.|..+|.            .
T Consensus       102 ~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~------------~  165 (330)
T 3hxj_A          102 DFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINP------------D  165 (330)
T ss_dssp             CEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECT------------T
T ss_pred             CceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECC------------C
Confidence            33333  4567788888999999988 777766665555667777777776 666778899999987            3


Q ss_pred             CccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec-CCceeEEEeCCCCCeEEEEccCCcE
Q 035621          168 DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF-PCAIMGLALDPTETDFFAAGSDGLI  246 (387)
Q Consensus       168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i  246 (387)
                       ......+......+.++...++  +. +..++  +.|..+| .+++.+..+.. ...+.++...++| .+.+++.++.+
T Consensus       166 -g~~~~~~~~~~~~~~~~~~d~~--g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~~gl  237 (330)
T 3hxj_A          166 -GTEKWRFKTNDAITSAASIGKD--GT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG-TIYVTSLDGHL  237 (330)
T ss_dssp             -SCEEEEEECSSCCCSCCEECTT--CC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS-CEEEEETTTEE
T ss_pred             -CCEeEEEecCCCceeeeEEcCC--CE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCC-eEEEEcCCCeE
Confidence             3344444444445555655444  34 44444  7899999 77777766663 3567788888876 45666677888


Q ss_pred             EEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeec
Q 035621          247 YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       247 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      ..++....         ...... .....+..+.+.+++ .|..++.+|.|..+|. +++.+..+..
T Consensus       238 ~~~~~~g~---------~~~~~~-~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~  292 (330)
T 3hxj_A          238 YAINPDGT---------EKWRFK-TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFET  292 (330)
T ss_dssp             EEECTTSC---------EEEEEE-CSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEEC
T ss_pred             EEECCCCC---------EeEEee-CCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEc
Confidence            88874321         111111 112223344555555 5666778888999996 6777776653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.42  E-value=2.9e-10  Score=97.11  Aligned_cols=221  Identities=13%  Similarity=0.039  Sum_probs=139.7

Q ss_pred             ceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE
Q 035621           41 RRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR  119 (387)
Q Consensus        41 v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  119 (387)
                      ..+..|+|+ ..+..    +...++.|..||..+++. ..+..+..+.+++++++|+++++. .+ .|.+||..+++...
T Consensus        51 ~egp~~~~~~~~l~~----~d~~~~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           51 GEGPTFDPASGTAWW----FNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL  123 (326)
T ss_dssp             EEEEEEETTTTEEEE----EEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred             CcCCeEeCCCCEEEE----EECCCCEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEE
Confidence            456788874 22222    244578999999877653 334456789999999999877764 44 49999998887543


Q ss_pred             EccC----CCCCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC
Q 035621          120 SFSA----HDKPVSCLKISPDGSLLISGGDD----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS  191 (387)
Q Consensus       120 ~~~~----~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  191 (387)
                      ....    ....+.+++++|+|+++++...+    +...+|.+..             .....+..+......++|+|++
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~-------------g~~~~~~~~~~~~~~i~~s~dg  190 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-------------GKVTKLFADISIPNSICFSPDG  190 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-------------TEEEEEEEEESSEEEEEECTTS
T ss_pred             EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC-------------CcEEEeeCCCcccCCeEEcCCC
Confidence            3221    12358899999999976654321    2334444411             1122222233456788998875


Q ss_pred             CCceE-EEEeCCCcEEEEeCC--CC-cE-----EEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc
Q 035621          192 FNSII-ISCSMDCTCKFWRLL--NG-TH-----LSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK  261 (387)
Q Consensus       192 ~~~~l-~s~~~d~~i~iwd~~--~~-~~-----~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  261 (387)
                        +.+ ++.+.++.|.+||+.  ++ ..     +..+. ....+..++++++|.++++...++.|.+|+...        
T Consensus       191 --~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g--------  260 (326)
T 2ghs_A          191 --TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG--------  260 (326)
T ss_dssp             --CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC--------
T ss_pred             --CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC--------
Confidence              544 455567899999986  55 31     22222 235578899999998777766678899998732        


Q ss_pred             cceeEeecccccccEEEEEEe-cCCCEEEEEeC
Q 035621          262 GQELVTLANRHDGVVVSVMMM-NEGKNLVSAAE  293 (387)
Q Consensus       262 ~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~  293 (387)
                       ..... ...+...+++++|+ ++++.|+.++.
T Consensus       261 -~~~~~-i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          261 -NHIAR-YEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             -CEEEE-EECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             -CEEEE-EECCCCCcEEEEEecCCCCEEEEEec
Confidence             11111 12345579999998 88876655443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.42  E-value=9.3e-13  Score=114.43  Aligned_cols=258  Identities=13%  Similarity=0.048  Sum_probs=138.6

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCC--
Q 035621            7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPE--   84 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~--   84 (387)
                      ++.++++++.||.|+.||..+|+.+.++..  +++.+..+..+..    .+++++.|+.|+.||..+++.+.......  
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~----~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~   81 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEP----AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE   81 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----C----CEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCC----EEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence            577899999999999999999999988875  4455444444321    23336789999999999998776655331  


Q ss_pred             Ceee-EEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621           85 PVAP-LATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        85 ~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      .+.+ ..+. ++..+++++.++.++.||.++|+.+..+..+.    ...++|++..+++++.|+.|+.||..        
T Consensus        82 ~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~--------  148 (369)
T 2hz6_A           82 LVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTK--------  148 (369)
T ss_dssp             HHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSS--------
T ss_pred             ccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECC--------
Confidence            1111 1111 34567888889999999999999888776543    23556788899999999999999983        


Q ss_pred             CCCCCccceEeeeccCCCeEEEEEeeCC-CCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeE-EEeCCCCCeE----
Q 035621          164 DKNPDDLMLQKFVAHNDSVTAITCCIGS-FNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMG-LALDPTETDF----  237 (387)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~-~~~~~~~~~l----  237 (387)
                          ++..+..+..+.  .....+..+. .+..++.++.||.++.||..+++.+..+....++.. ..+++++...    
T Consensus       149 ----tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~  222 (369)
T 2hz6_A          149 ----TRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHI  222 (369)
T ss_dssp             ----SSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECCE
T ss_pred             ----CCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccce
Confidence                333333322111  1111222210 014677788999999999999999988887666544 3445555321    


Q ss_pred             EEEccCCcEEEEeccccc----cccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          238 FAAGSDGLIYKGLLKYQS----RQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       238 ~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      +.+  ++.++.+|..++.    .......          ...+.+.  .-.+..|+.++.||.++.++..
T Consensus       223 ~~~--~~~l~~ld~~tG~~~~~~~W~~~~----------~~~~~sp--~~~~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          223 NVA--VETLRYLTFMSGEVGRITKWKYPF----------PKETEAK--SKLTPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             EEE--HHHHHHHHHHHHHHHHHHTSCCCC----------CCHHHHH--HHSEEEECBEECSSCEECCEEE
T ss_pred             eec--ccceeeeehhcCCcccceeeeecc----------Ccccccc--ccccceEEEecccCCEEecCcc
Confidence            112  3345556654433    1111100          0111000  0123567778888999888876

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.42  E-value=3e-11  Score=114.00  Aligned_cols=236  Identities=13%  Similarity=0.093  Sum_probs=146.3

Q ss_pred             ccccCCCcEEEe-----eCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeee--cccc-------CCCCCeEE
Q 035621            2 LHHLPCNEVILT-----SSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAAS--HISP-------TTGSGSVH   67 (387)
Q Consensus         2 l~~s~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~-------~~~d~~v~   67 (387)
                      ++|||||++||.     |+....|++||+.+++.+.... +......++|+ ++..+..  .--.       ......|+
T Consensus       134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~  211 (693)
T 3iuj_A          134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVY  211 (693)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEE
T ss_pred             EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEE
Confidence            379999999984     4444679999999998654311 11113567788 5432221  1000       02234699


Q ss_pred             EEEccCCCc--ccccCC----CCCeeeEEeccCCCEEEEec----CCCcEEEEeCCCCc-eeEEccCCCCCeEEEEEcCC
Q 035621           68 LYNLWSSTP--LHNIPV----PEPVAPLATTADGSYLFTGG----LSGNVYAISVPKGD-ILRSFSAHDKPVSCLKISPD  136 (387)
Q Consensus        68 vw~~~~~~~--~~~~~~----~~~v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~  136 (387)
                      +|++.++..  ...+..    +.....+.|+|||++|+...    ....|+++|+.++. ....+..+....... ++++
T Consensus       212 ~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~  290 (693)
T 3iuj_A          212 FHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNK  290 (693)
T ss_dssp             EEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEE
T ss_pred             EEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Eecc
Confidence            999877643  222222    23467889999999886543    23589999997763 344555555555554 5666


Q ss_pred             CCEEE-EEeCC---CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCC--cEEEEe
Q 035621          137 GSLLI-SGGDD---GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDC--TCKFWR  209 (387)
Q Consensus       137 ~~~l~-~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~--~i~iwd  209 (387)
                      +..|+ ....+   +.|..+|+...          .......+..|...+.  .|++++  +.|+... .++  .|++||
T Consensus       291 g~~l~~~t~~~~~~~~l~~~d~~~~----------~~~~~~~l~~~~~~~~--~~s~~g--~~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          291 GSTLYLLTNRDAPNRRLVTVDAANP----------GPAHWRDLIPERQQVL--TVHSGS--GYLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             TTEEEEEECTTCTTCEEEEEETTSC----------CGGGCEEEECCCSSCE--EEEEET--TEEEEEEEETTEEEEEEEC
T ss_pred             CCEEEEEECCCCCCCEEEEEeCCCC----------CccccEEEecCCCCEE--EEEEEC--CEEEEEEEECCeeEEEEEE
Confidence            66554 44433   57888888321          1112345556666554  778875  5555444 454  688999


Q ss_pred             CCCCcEEEEEec--CCceeEEEeCCCCCeEEEEccC----CcEEEEeccccc
Q 035621          210 LLNGTHLSTVTF--PCAIMGLALDPTETDFFAAGSD----GLIYKGLLKYQS  255 (387)
Q Consensus       210 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~  255 (387)
                      +..+ ....+..  ...+..+.++++++.++....+    +.++.||+..+.
T Consensus       357 ~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          357 YEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             TTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             CCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            8744 4555553  3467778888898887776554    789999987643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.39  E-value=6.8e-11  Score=101.79  Aligned_cols=227  Identities=10%  Similarity=0.090  Sum_probs=143.7

Q ss_pred             CCeeeEEeccCCCEEEEec--CCCcEEEEeCCCCceeEEcc-------CCCCCeEEEEEcCCCCEEEEEeC-----CCcE
Q 035621           84 EPVAPLATTADGSYLFTGG--LSGNVYAISVPKGDILRSFS-------AHDKPVSCLKISPDGSLLISGGD-----DGVI  149 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~-----dg~i  149 (387)
                      ..+..++++++|+.+++..  .++.+++|.+.+++. ..+.       .+...+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5688999999999888853  234244444435543 3221       34567999999999876665433     5789


Q ss_pred             EEEeCCcccccCCCCCCCCccceEeeec------cCCCeEEEEEeeCCCCceEEEEe---CCCcEEEEeCCCCcEEEEEe
Q 035621          150 ATVPIFQLVDEHTDDKNPDDLMLQKFVA------HNDSVTAITCCIGSFNSIIISCS---MDCTCKFWRLLNGTHLSTVT  220 (387)
Q Consensus       150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~  220 (387)
                      .+||+            .+...+..+..      +......+++.++. +..+++..   .++.|.+||+.+++..+.+.
T Consensus        96 ~~~d~------------~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~-g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~  162 (343)
T 2qe8_A           96 VAWDT------------LNNQLSRVIYLPPPITLSNSFVNDLAVDLIH-NFVYISDPAPDDKAALIRVDLQTGLAARVLQ  162 (343)
T ss_dssp             EEEET------------TTTEEEEEEECCTTTSCTTCCCCEEEEETTT-TEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred             EEEEC------------CCCeEEEEEECChhhcccccccceEEEecCC-CEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence            99998            33333333332      22356788988753 35556655   67899999998887655442


Q ss_pred             c------------------------------CCceeEEEeCCCCCeEEEEccCC-cEEEEecccccccccccc---ceeE
Q 035621          221 F------------------------------PCAIMGLALDPTETDFFAAGSDG-LIYKGLLKYQSRQQMHKG---QELV  266 (387)
Q Consensus       221 ~------------------------------~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~---~~~~  266 (387)
                      .                              ...+..++|+|+++.|+++...+ .++.++............   ..+.
T Consensus       163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  242 (343)
T 2qe8_A          163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE  242 (343)
T ss_dssp             TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred             CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE
Confidence            1                              02358899999999888887665 555554321100000000   0000


Q ss_pred             eecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          267 TLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       267 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      .  .++......++++++|.++++...++.|.+||..+++............+++++|.+
T Consensus       243 ~--~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~  300 (343)
T 2qe8_A          243 R--YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS  300 (343)
T ss_dssp             E--EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT
T ss_pred             e--cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC
Confidence            0  123445678999999999999888999999998667654444333234678888874

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.38  E-value=1.2e-10  Score=104.20  Aligned_cols=313  Identities=10%  Similarity=0.053  Sum_probs=187.9

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEeccCC---------------------------------C------CCceeEEEcC-c
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHFSGS---------------------------------R------SPRRGLTFAG-K   49 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------------------~------~~v~~~~~~~-~   49 (387)
                      .|.+|+..|.++|+-+.+++.+..+.-.                                 .      +.......+. +
T Consensus        17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~   96 (595)
T 1fwx_A           17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   96 (595)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred             EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence            3778999999999999888766544210                                 0      1111223332 2


Q ss_pred             cceeeecc-ccCCCCCeEEEEEccCCCccc--ccCCCCCeeeEEe-c-cCCCEEEEec------------------CCCc
Q 035621           50 PFIAASHI-SPTTGSGSVHLYNLWSSTPLH--NIPVPEPVAPLAT-T-ADGSYLFTGG------------------LSGN  106 (387)
Q Consensus        50 ~~~~~~~~-~~~~~d~~v~vw~~~~~~~~~--~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg~  106 (387)
                      +.....++ ++...++.|.+.|+.+.+...  .+.....+..+++ + |+++++++++                  .++.
T Consensus        97 g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           97 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             CCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence            22222222 234567789999999998777  4444567888888 5 9999999884                  3457


Q ss_pred             EEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEeCCcccccCCCCC------
Q 035621          107 VYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG---------------VIATVPIFQLVDEHTDDK------  165 (387)
Q Consensus       107 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~~~~~~~~~~------  165 (387)
                      +.++|..+.+...++.--. ....++++|+|+++++.+.+.               .|.+.|............      
T Consensus       177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            9999999998888776322 457788999999999988663               244444322110000000      


Q ss_pred             -----CCC--ccc-eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc------------EEEEEecCCce
Q 035621          166 -----NPD--DLM-LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT------------HLSTVTFPCAI  225 (387)
Q Consensus       166 -----~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~v  225 (387)
                           ...  ... +..+.. .....++.++|++ ...++++..+.+|.++|+.+.+            ....+......
T Consensus       256 V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDG-k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP  333 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDK-KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP  333 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTS-SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred             EEEEeCcccCCceeEEEEec-CCCceEEEEcCCC-CEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence                 011  112 222322 2234567888886 2345555568899999998653            45556667889


Q ss_pred             eEEEeCCCCCeEEE-EccCCcEEEEecccccccc-ccccceeEeecccccc-----cEEEEEEecCCCEEEEEeC---CC
Q 035621          226 MGLALDPTETDFFA-AGSDGLIYKGLLKYQSRQQ-MHKGQELVTLANRHDG-----VVVSVMMMNEGKNLVSAAE---DG  295 (387)
Q Consensus       226 ~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~s~~~---dg  295 (387)
                      ..++|+|+| ++++ ..-|+.|.+|++....... -.+..........|..     .-..+.++|||++|++...   |+
T Consensus       334 ~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr  412 (595)
T 1fwx_A          334 LHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR  412 (595)
T ss_dssp             EEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred             ceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence            999999999 5555 4559999999987632110 0000112222222322     2223356899999998743   44


Q ss_pred             cE----------EEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          296 SV----------YIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       296 ~i----------~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      .+          .++|+..+++...........+....+.+
T Consensus       413 ~~~~gp~~~~~~ql~dis~~~m~lv~d~p~~~ePh~~~i~~  453 (595)
T 1fwx_A          413 FLNVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVH  453 (595)
T ss_dssp             SCCCCSSCCEEEEEEECSSSSCEEEEEEEESSCCCCEEEEC
T ss_pred             cccCCCCCCCcceEEEcCCCcEEEEEEEcCCCCCCceEEcc
Confidence            32          88999766644333332234455554444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.37  E-value=1.3e-09  Score=102.01  Aligned_cols=279  Identities=14%  Similarity=0.159  Sum_probs=175.0

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCc-----------eeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPR-----------RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP   76 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~   76 (387)
                      +..+++++.++.|+.+|..+|+.+.++.......           ..+++..      ..++.++.|+.|..+|..+|+.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~v~~~dg~l~alD~~tG~~  139 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWG------DKVYVGTLDGRLIALDAKTGKA  139 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEB------TEEEEECTTSEEEEEETTTCCE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEEC------CEEEEEcCCCEEEEEECCCCCE
Confidence            4566677778999999999999988775433211           1122222      2334467899999999999998


Q ss_pred             ccccCCCCC--eeeEEecc--CCCEEEEecC------CCcEEEEeCCCCceeEEccCCC---------------------
Q 035621           77 LHNIPVPEP--VAPLATTA--DGSYLFTGGL------SGNVYAISVPKGDILRSFSAHD---------------------  125 (387)
Q Consensus        77 ~~~~~~~~~--v~~~~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~---------------------  125 (387)
                      +..+.....  ...+.-+|  .+..++++..      +|.|..+|.++|+.+..+....                     
T Consensus       140 ~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g  219 (668)
T 1kv9_A          140 IWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG  219 (668)
T ss_dssp             EEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred             eeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence            876654211  11111111  2345665543      5889999999999987764210                     


Q ss_pred             ----------CCeEEEEEcCCCCEEEEEeCCCc-------------------EEEEeCCcccccCCCCCCCCccceEeee
Q 035621          126 ----------KPVSCLKISPDGSLLISGGDDGV-------------------IATVPIFQLVDEHTDDKNPDDLMLQKFV  176 (387)
Q Consensus       126 ----------~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~  176 (387)
                                .....++++|+..+++.++.++.                   |..+|.            .+++.+-.++
T Consensus       220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~------------~tG~~~W~~~  287 (668)
T 1kv9_A          220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP------------DTGKLAWHYQ  287 (668)
T ss_dssp             SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT------------TTCCEEEEEE
T ss_pred             cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcC------------CCCceeeEee
Confidence                      01124688888888888887663                   788887            4444544443


Q ss_pred             c--cC-------CCeEEEEEeeCCC-CceEEEEeCCCcEEEEeCCCCcEEEEEecCC-------------c---------
Q 035621          177 A--HN-------DSVTAITCCIGSF-NSIIISCSMDCTCKFWRLLNGTHLSTVTFPC-------------A---------  224 (387)
Q Consensus       177 ~--~~-------~~i~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~---------  224 (387)
                      .  |.       .+.....+..++. ...++.++.+|.++++|..+|+.+..++...             +         
T Consensus       288 ~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~  367 (668)
T 1kv9_A          288 VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYE  367 (668)
T ss_dssp             SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCS
T ss_pred             cCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccccccccc
Confidence            2  21       2222222233331 1268899999999999999999885554211             0         


Q ss_pred             ---------------eeEEEeCCCCCeEEEEc------------------------------------cCCcEEEEeccc
Q 035621          225 ---------------IMGLALDPTETDFFAAG------------------------------------SDGLIYKGLLKY  253 (387)
Q Consensus       225 ---------------v~~~~~~~~~~~l~~~~------------------------------------~dg~i~i~d~~~  253 (387)
                                     -..++++|+...+++..                                    .+|.|+.||..+
T Consensus       368 ~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t  447 (668)
T 1kv9_A          368 KEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK  447 (668)
T ss_dssp             SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT
T ss_pred             CCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC
Confidence                           01256777766666532                                    136677788776


Q ss_pred             cccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          254 QSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      ++...        ..  .+..+.....+...+.+++.++.||.|+.||.++++.+..++..
T Consensus       448 G~~~W--------~~--~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          448 QKAAW--------KV--PYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             TEEEE--------EE--EESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CcEEE--------Ec--cCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence            43221        11  11122233344456788899999999999999999999998765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.36  E-value=7.9e-10  Score=101.34  Aligned_cols=276  Identities=14%  Similarity=0.107  Sum_probs=168.1

Q ss_pred             CcEEEeeCC-CCcEEEEeC-CCCceeEeccCCCCC-c----------eeEEEcCccceeeeccccCCCCCeEEEEEccCC
Q 035621            8 NEVILTSSP-EGPITAYNP-SSGAILAHFSGSRSP-R----------RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS   74 (387)
Q Consensus         8 ~~~l~~~~~-dg~i~iwd~-~~~~~~~~~~~~~~~-v----------~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~   74 (387)
                      +..++.++. ++.|.-+|. .+|+.+.++...... +          ..+++..+      .++.++.|+.+..+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~v~~~dg~l~alD~~tG  135 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAG------QIVKKQANGHLLALDAKTG  135 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETT------EEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECC------EEEEEeCCCEEEEEECCCC
Confidence            445566666 899999999 899998776533211 1          12233332      2333567999999999999


Q ss_pred             CcccccCCCC-----Ceee-EEeccCCCEEEEecC------CCcEEEEeCCCCceeEEccCCCCC---------------
Q 035621           75 TPLHNIPVPE-----PVAP-LATTADGSYLFTGGL------SGNVYAISVPKGDILRSFSAHDKP---------------  127 (387)
Q Consensus        75 ~~~~~~~~~~-----~v~~-~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~---------------  127 (387)
                      +.+.......     .+.+ ...  .+..+++++.      ++.|..+|.++|+.+.++......               
T Consensus       136 ~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~  213 (571)
T 2ad6_A          136 KINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPH  213 (571)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccc
Confidence            9887665432     2221 111  2345666654      789999999999988766432110               


Q ss_pred             -----------------------eEEEEEcCCCCEEEEEeCC----------------CcEEEEeCCcccccCCCCCCCC
Q 035621          128 -----------------------VSCLKISPDGSLLISGGDD----------------GVIATVPIFQLVDEHTDDKNPD  168 (387)
Q Consensus       128 -----------------------v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~  168 (387)
                                             ...+++.++...++.+..+                +.|..+|.            .+
T Consensus       214 ~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~------------~t  281 (571)
T 2ad6_A          214 YGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDL------------DT  281 (571)
T ss_dssp             GCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEET------------TT
T ss_pred             ccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEec------------CC
Confidence                                   0235666766667666532                24778877            34


Q ss_pred             ccceEeeec--c--------CCCeEEEEEeeCCCC-ceEEEEeCCCcEEEEeCCCCcEEEEEecCC--------------
Q 035621          169 DLMLQKFVA--H--------NDSVTAITCCIGSFN-SIIISCSMDCTCKFWRLLNGTHLSTVTFPC--------------  223 (387)
Q Consensus       169 ~~~~~~~~~--~--------~~~i~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------  223 (387)
                      ++.+-.++.  |        ..++. +....++.. ..++.++.+|.+.++|..+++.+..+....              
T Consensus       282 G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~  360 (571)
T 2ad6_A          282 GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGT  360 (571)
T ss_dssp             CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCS
T ss_pred             CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCc
Confidence            444444332  1        12221 111123200 357788889999999999999988776322              


Q ss_pred             ce--------------------------eEEEeCCCCCeEEEEcc-----------------------------------
Q 035621          224 AI--------------------------MGLALDPTETDFFAAGS-----------------------------------  242 (387)
Q Consensus       224 ~v--------------------------~~~~~~~~~~~l~~~~~-----------------------------------  242 (387)
                      ++                          ..++++|+...+++...                                   
T Consensus       361 p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~  440 (571)
T 2ad6_A          361 PVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTK  440 (571)
T ss_dssp             EEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTS
T ss_pred             eecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCC
Confidence            11                          23577888777777643                                   


Q ss_pred             --CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          243 --DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       243 --dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                        +|.++.||..+++..        -..  .+...+....+...+..++.++.||.|+.||.++|+++.+++..
T Consensus       441 ~~~g~l~a~D~~tG~~~--------W~~--~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          441 KEMGQIRAFDLTTGKAK--------WTK--WEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             CCCEEEEEECTTTCCEE--------EEE--EESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCCeEEEEECCCCCEE--------EEe--cCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence              356777777664322        111  11112222222334667777999999999999999999998754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.35  E-value=3.2e-13  Score=117.38  Aligned_cols=188  Identities=16%  Similarity=0.137  Sum_probs=107.5

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceE
Q 035621           94 DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQ  173 (387)
Q Consensus        94 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  173 (387)
                      ++..+++++.||.|+.||..+|+.+..+..  +.+.+..+..++..+++++.||.|+.||..            +++.+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~------------tG~~~w   73 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK------------NNEGLT   73 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----------------CCSE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECC------------CCceee
Confidence            567899999999999999999999988875  455555566677788888999999999983            233322


Q ss_pred             eeeccCC-CeEEEEEeeCC-CCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEec
Q 035621          174 KFVAHND-SVTAITCCIGS-FNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLL  251 (387)
Q Consensus       174 ~~~~~~~-~i~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  251 (387)
                      .+..+.. .+.   .+|.. .+..+++++.|+.++.||..+|+.+..+.....   ..++|++..+++++.++.|+.||.
T Consensus        74 ~~~~~~~~~~~---~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           74 KLPFTIPELVQ---ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDT  147 (369)
T ss_dssp             ECSCCHHHHHT---TCSCC-----CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCS
T ss_pred             eeeccCccccc---cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEEC
Confidence            2221110 000   01110 135677888899999999999999887765432   345678899999999999999999


Q ss_pred             cccccccccccceeEeecccccccEEEEEEecCC---CEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          252 KYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEG---KNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      .++........       ..    ....++.++.   ..+++++.||.|+.||..+|+.+.++.
T Consensus       148 ~tG~~~W~~~~-------~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          148 KTRELRWNATY-------FD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             SSSSCCCEEEE-------EE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             CCCCEEEeEec-------cc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            88543221110       00    1122233322   457778899999999999999988876

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.34  E-value=2.8e-09  Score=92.16  Aligned_cols=218  Identities=8%  Similarity=0.035  Sum_probs=140.9

Q ss_pred             cccCCCCCeEEEEEccCC----CcccccC--------CCCCeeeEEeccCCCEEEEecCC------CcEEEEeCCCCcee
Q 035621           57 ISPTTGSGSVHLYNLWSS----TPLHNIP--------VPEPVAPLATTADGSYLFTGGLS------GNVYAISVPKGDIL  118 (387)
Q Consensus        57 ~~~~~~d~~v~vw~~~~~----~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~  118 (387)
                      ++++..++.|.++|+.+.    +....++        .......+.++|+| .++++..+      |.|.++|.++.+.+
T Consensus        99 ~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~  177 (462)
T 2ece_A           99 IVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPL  177 (462)
T ss_dssp             EEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEE
T ss_pred             EEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEE
Confidence            344778899999998654    3344442        11245667889999 66665544      68999999999999


Q ss_pred             EEccCCCC---CeEEEEEcCCCCEEEEEe-------------------CCCcEEEEeCCcccccCCCCCCCCccceEeee
Q 035621          119 RSFSAHDK---PVSCLKISPDGSLLISGG-------------------DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV  176 (387)
Q Consensus       119 ~~~~~~~~---~v~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  176 (387)
                      .++.....   --..+.|+|+++.+++..                   .+..|.+||+            ...+.+.++.
T Consensus       178 ~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~------------~~~k~~~tI~  245 (462)
T 2ece_A          178 GKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL------------RKRKRIHSLT  245 (462)
T ss_dssp             EECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET------------TTTEEEEEEE
T ss_pred             EEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC------------CCCcEeeEEe
Confidence            98863222   234588899999888885                   3689999999            3444455554


Q ss_pred             cc-C-CCeEEEEEeeCCCCceEEEEe------CCCcEEEEeCCCCcE--EEEEe--c-----------------CCceeE
Q 035621          177 AH-N-DSVTAITCCIGSFNSIIISCS------MDCTCKFWRLLNGTH--LSTVT--F-----------------PCAIMG  227 (387)
Q Consensus       177 ~~-~-~~i~~~~~~~~~~~~~l~s~~------~d~~i~iwd~~~~~~--~~~~~--~-----------------~~~v~~  227 (387)
                      .. . .....+.|..++++++++.+.      .+++|.+|....++.  ...+.  .                 ...+..
T Consensus       246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence            42 1 233456663333346655555      567888776655431  12211  0                 245788


Q ss_pred             EEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeeccc-------c------cccEEEEEEecCCCEEEEEe
Q 035621          228 LALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANR-------H------DGVVVSVMMMNEGKNLVSAA  292 (387)
Q Consensus       228 ~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~------~~~v~~~~~s~~~~~l~s~~  292 (387)
                      +.++|||++|+++.. .+.|.+||+.....     .........+       |      .+....++++|||++|+++.
T Consensus       326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~-----~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYDISNPFK-----PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEECSSTTS-----CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCC-----cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999999999999877 78999999864211     1111111111       0      11367899999999999887

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.32  E-value=1.2e-09  Score=97.75  Aligned_cols=206  Identities=13%  Similarity=0.105  Sum_probs=140.2

Q ss_pred             CCCEEEEecC-CCcEEEEeCCCCceeEEccC-CCCCeEEEEE-c-CCCCEEEEEeC------------------CCcEEE
Q 035621           94 DGSYLFTGGL-SGNVYAISVPKGDILRSFSA-HDKPVSCLKI-S-PDGSLLISGGD------------------DGVIAT  151 (387)
Q Consensus        94 ~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~~~~~------------------dg~i~i  151 (387)
                      ||+++++... ++.|.+.|+.+.++...+.- ....+..+++ + |++++++++++                  ++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            7888887664 45799999999998774432 2346889998 5 89999998852                  346777


Q ss_pred             EeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-----------------------------
Q 035621          152 VPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-----------------------------  202 (387)
Q Consensus       152 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-----------------------------  202 (387)
                      .|.            .+.+...++..-. ....++++|++  .++++.+.+                             
T Consensus       180 ID~------------~t~~v~~qI~Vgg-~pd~~~~spdG--k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~  244 (595)
T 1fwx_A          180 VDA------------DKWEVAWQVLVSG-NLDNCDADYEG--KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  244 (595)
T ss_dssp             EET------------TTTEEEEEEEESS-CCCCEEECSSS--SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             EEC------------CCCeEEEEEEeCC-CccceEECCCC--CEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence            777            3333444443222 23445566663  555555533                             


Q ss_pred             ---------CcEEEEeCCC--CcE-EEEEecCCceeEEEeCCCCCeEEEEcc-CCcEEEEecccccccc---ccccceeE
Q 035621          203 ---------CTCKFWRLLN--GTH-LSTVTFPCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQ---MHKGQELV  266 (387)
Q Consensus       203 ---------~~i~iwd~~~--~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~---~~~~~~~~  266 (387)
                               +.|.+.|..+  ++. +..+..+....++.++|||+++++++. +..|.++|+.+.....   ......+.
T Consensus       245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~  324 (595)
T 1fwx_A          245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  324 (595)
T ss_dssp             HHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred             ccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence                     2478888887  555 677777778899999999999888875 8899999998642100   00011111


Q ss_pred             eecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC----------ccEEEEeeccc
Q 035621          267 TLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK----------RQVVMVLKNEL  315 (387)
Q Consensus       267 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~  315 (387)
                      ... .-......++|+|+|...++.-.|++|.+||+.+          .+.+.++..+.
T Consensus       325 ~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y  382 (595)
T 1fwx_A          325 AEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY  382 (595)
T ss_dssp             ECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS
T ss_pred             EEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc
Confidence            111 2345688999999995555677899999999988          66777777654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.32  E-value=3.4e-09  Score=97.12  Aligned_cols=290  Identities=13%  Similarity=0.063  Sum_probs=169.9

Q ss_pred             CcEEEeeCC-CCcEEEEeC-CCCceeEeccCCCCC-----------ceeEEEcC-ccceeeeccccCCCCCeEEEEEccC
Q 035621            8 NEVILTSSP-EGPITAYNP-SSGAILAHFSGSRSP-----------RRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWS   73 (387)
Q Consensus         8 ~~~l~~~~~-dg~i~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~   73 (387)
                      +..+++++. ++.|.-+|. .+|+.+-++......           ...+++.| +.. ....++.++.|+.+..+|..+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~-~~~rV~v~t~dg~l~AlDa~T  140 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGK-TPALILKTQLDGNVAALNAET  140 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSS-SCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCc-ceeEEEEEcCCCEEEEEECCC
Confidence            445666666 889999999 899998777543221           12344421 111 001134467899999999999


Q ss_pred             CCcccccCCCC-----Ceee-EEeccCCCEEEEec------CCCcEEEEeCCCCceeEEccCCCCC--------------
Q 035621           74 STPLHNIPVPE-----PVAP-LATTADGSYLFTGG------LSGNVYAISVPKGDILRSFSAHDKP--------------  127 (387)
Q Consensus        74 ~~~~~~~~~~~-----~v~~-~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~--------------  127 (387)
                      |+.+.......     .+.+ ..+ .++ .+++++      .+|.|+.+|.++|+.+..+......              
T Consensus       141 G~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~  218 (599)
T 1w6s_A          141 GETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (599)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             CCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence            99887655332     2221 111 134 556655      3789999999999988766432110              


Q ss_pred             -----------------------e-EEEEEcCCCCEEEEEeCCC----------------cEEEEeCCcccccCCCCCCC
Q 035621          128 -----------------------V-SCLKISPDGSLLISGGDDG----------------VIATVPIFQLVDEHTDDKNP  167 (387)
Q Consensus       128 -----------------------v-~~~~~~~~~~~l~~~~~dg----------------~i~iwd~~~~~~~~~~~~~~  167 (387)
                                             + ..+++.++..+++.+..++                .|..+|.            .
T Consensus       219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~------------~  286 (599)
T 1w6s_A          219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDA------------D  286 (599)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEET------------T
T ss_pred             cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeC------------C
Confidence                                   0 1346667777777776653                6777777            3


Q ss_pred             CccceEeeeccC----------CCeEEEEEeeCCCC---ceEEEEeCCCcEEEEeCCCCcEEEEEecCC-----------
Q 035621          168 DDLMLQKFVAHN----------DSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPC-----------  223 (387)
Q Consensus       168 ~~~~~~~~~~~~----------~~i~~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----------  223 (387)
                      +++.+-.++...          .++. +.. ++.++   ..++.++.+|.+.++|..+++.+.......           
T Consensus       287 TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~-~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~  364 (599)
T 1w6s_A          287 TGEAKFGYQKTPHDEWDYAGVNVMML-SEQ-KDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLK  364 (599)
T ss_dssp             TCCEEEEEESSTTCSSCCCCCCCCEE-EEE-ECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTT
T ss_pred             CCceeeEeecCCCccccccCCCccEE-Eec-cccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccC
Confidence            444444433221          1221 111 11224   467778899999999999999987765321           


Q ss_pred             ---ce--------------------------eEEEeCCCCCeEEEEcc--------------------------------
Q 035621          224 ---AI--------------------------MGLALDPTETDFFAAGS--------------------------------  242 (387)
Q Consensus       224 ---~v--------------------------~~~~~~~~~~~l~~~~~--------------------------------  242 (387)
                         ++                          ..++++|+..++++...                                
T Consensus       365 ~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~  444 (599)
T 1w6s_A          365 TGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKG  444 (599)
T ss_dssp             TCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTS
T ss_pred             CCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcC
Confidence               11                          24567777776666432                                


Q ss_pred             -------CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeeccc
Q 035621          243 -------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL  315 (387)
Q Consensus       243 -------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  315 (387)
                             .|.+..||+.+++....        ..  +..+...-.....+.+++.++.||.++.||.++|+++.+++...
T Consensus       445 ~~~~~~~~G~l~A~D~~tG~~~W~--------~~--~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~  514 (599)
T 1w6s_A          445 DRQNYEGLGQIKAYNAITGDYKWE--------KM--ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS  514 (599)
T ss_dssp             BTTTTBCCEEEEEECTTTCCEEEE--------EE--ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CcccCCCcCeEEEEECCCCCEEeE--------ec--CCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence                   24455555554322111        10  01111111122256677789999999999999999999987543


Q ss_pred             CCCceeEEE
Q 035621          316 AGSISEMVI  324 (387)
Q Consensus       316 ~~~v~~~~~  324 (387)
                      ...-+.+.+
T Consensus       515 g~~~~P~~y  523 (599)
T 1w6s_A          515 GAIGYPMTY  523 (599)
T ss_dssp             CCCSCCEEE
T ss_pred             CcEeccEEE
Confidence            322233444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.31  E-value=3e-09  Score=91.91  Aligned_cols=206  Identities=16%  Similarity=0.158  Sum_probs=134.4

Q ss_pred             cCCCEEEEe-cCCCcEEEEeCCCC----ceeEEcc------C-CCCCeEEEEEcCCCCEEEEEeCC------CcEEEEeC
Q 035621           93 ADGSYLFTG-GLSGNVYAISVPKG----DILRSFS------A-HDKPVSCLKISPDGSLLISGGDD------GVIATVPI  154 (387)
Q Consensus        93 ~~~~~l~~~-~~dg~i~i~d~~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~  154 (387)
                      +++++|++. ..++.|+++|+.+.    +...+++      . .......+...|+| +++++..+      |.|.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            778877764 46789999998755    5555552      1 12245678889999 77766655      78999998


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCC---eEEEEEeeCCCCceEEEEe-------------------CCCcEEEEeCCC
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDS---VTAITCCIGSFNSIIISCS-------------------MDCTCKFWRLLN  212 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~~l~s~~-------------------~d~~i~iwd~~~  212 (387)
                                  .+...+.++.....+   -..+.|+|+.  +.+++..                   .+.+|.+||+.+
T Consensus       172 ------------~T~~v~~~~~~~~~~~~~~Yd~~~~p~~--~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~  237 (462)
T 2ece_A          172 ------------YSFEPLGKWEIDRGDQYLAYDFWWNLPN--EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK  237 (462)
T ss_dssp             ------------TTCCEEEECCSBCTTCCCCCCEEEETTT--TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred             ------------CCCeEEEEEccCCCCccccceEEECCCC--CEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence                        445556655432222   2346778875  6777774                   368999999999


Q ss_pred             CcEEEEEecC---CceeEEEe--CCCCCeEEEEcc------CCcEEEEecccccccccc----ccceeEeec-------c
Q 035621          213 GTHLSTVTFP---CAIMGLAL--DPTETDFFAAGS------DGLIYKGLLKYQSRQQMH----KGQELVTLA-------N  270 (387)
Q Consensus       213 ~~~~~~~~~~---~~v~~~~~--~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~----~~~~~~~~~-------~  270 (387)
                      ++.+.++...   .....+.|  +|+++++++++.      ++.|.+|....+......    ........+       .
T Consensus       238 ~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~  317 (462)
T 2ece_A          238 RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFK  317 (462)
T ss_dssp             TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGT
T ss_pred             CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccc
Confidence            9888888864   34555655  999999998875      568877766542211000    000000000       0


Q ss_pred             cccccEEEEEEecCCCEEEEEeC-CCcEEEEECCC---ccEEEEeec
Q 035621          271 RHDGVVVSVMMMNEGKNLVSAAE-DGSVYIWEIEK---RQVVMVLKN  313 (387)
Q Consensus       271 ~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~~  313 (387)
                      +-...+..+.+|+||++|.++.. .+.|.+||+..   .+++..+..
T Consensus       318 ~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t  364 (462)
T 2ece_A          318 AVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL  364 (462)
T ss_dssp             EECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred             cCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence            00245788999999998887654 67999999863   456665543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.29  E-value=7.1e-09  Score=95.17  Aligned_cols=287  Identities=12%  Similarity=0.091  Sum_probs=166.7

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEeccCCCCCc---------eeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHFSGSRSPR---------RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      .+++++.++.|.-+|..+|+.+-++.......         ..+++..+.      ++.++.++.+..+|..+|+.+...
T Consensus        70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~------v~~~t~dg~l~AlD~~TG~~~W~~  143 (582)
T 1flg_A           70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDK------VFFGTLDASVVALNKNTGKVVWKK  143 (582)
T ss_dssp             EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTE------EEEEETTTEEEEEESSSCCEEEEE
T ss_pred             EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCE------EEEEeCCCEEEEEECCCCCEEeee
Confidence            44444443349999999999987775433211         222333322      333567899999999999987765


Q ss_pred             CCCC-----Cee-eEEecc---CCC-EEEEec------CCCcEEEEeCCCCceeEEccCCCCCe----------------
Q 035621           81 PVPE-----PVA-PLATTA---DGS-YLFTGG------LSGNVYAISVPKGDILRSFSAHDKPV----------------  128 (387)
Q Consensus        81 ~~~~-----~v~-~~~~~~---~~~-~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~v----------------  128 (387)
                      ....     .+. ...+..   +++ .+++++      .+|.|..+|.++|+.+.........+                
T Consensus       144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~  223 (582)
T 1flg_A          144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA  223 (582)
T ss_dssp             ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred             cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence            5322     111 111111   233 566664      37899999999999876553211000                


Q ss_pred             -------------------------EEEEEcCCCCEEEEEeC--------------------C----CcEEEEeCCcccc
Q 035621          129 -------------------------SCLKISPDGSLLISGGD--------------------D----GVIATVPIFQLVD  159 (387)
Q Consensus       129 -------------------------~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~  159 (387)
                                               ..++++|+..+++.+..                    |    +.|..+|.     
T Consensus       224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~-----  298 (582)
T 1flg_A          224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDP-----  298 (582)
T ss_dssp             TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECT-----
T ss_pred             ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeC-----
Confidence                                     13566676677776653                    2    56778877     


Q ss_pred             cCCCCCCCCccceEeeec--cCC----CeEE-EEEeeC-CCC---ceEEEEeCCCcEEEEeCCCCcEEEEEecCCce---
Q 035621          160 EHTDDKNPDDLMLQKFVA--HND----SVTA-ITCCIG-SFN---SIIISCSMDCTCKFWRLLNGTHLSTVTFPCAI---  225 (387)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~--~~~----~i~~-~~~~~~-~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v---  225 (387)
                             .+++.+-.++.  |..    .+.. +.+... .++   ..++.++.+|.++++|..+++.+..+.....+   
T Consensus       299 -------~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~  371 (582)
T 1flg_A          299 -------SSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWA  371 (582)
T ss_dssp             -------TTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSE
T ss_pred             -------CCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccc
Confidence                   34444444432  210    0111 111110 123   37888999999999999999998777643200   


Q ss_pred             -------------------------------------------eEEEeCCCCCeEEEEcc--------------------
Q 035621          226 -------------------------------------------MGLALDPTETDFFAAGS--------------------  242 (387)
Q Consensus       226 -------------------------------------------~~~~~~~~~~~l~~~~~--------------------  242 (387)
                                                                 ..++++|+...+++...                    
T Consensus       372 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~  451 (582)
T 1flg_A          372 SHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYL  451 (582)
T ss_dssp             EEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred             ccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCcee
Confidence                                                       13456666666665432                    


Q ss_pred             -------------CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEE
Q 035621          243 -------------DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVM  309 (387)
Q Consensus       243 -------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  309 (387)
                                   +|.|+.||+.+++......          +..++..-.....+.+++.|+.||.++.||.++|+.+.
T Consensus       452 g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~----------~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW  521 (582)
T 1flg_A          452 GMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHK----------EHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELW  521 (582)
T ss_dssp             CEEEEEEESCSSCSEEEEEECTTTCCEEEEEE----------ESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccceeecCCCCCCcceEEEEECCCCCEEEEec----------CCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence                         4667777777643221110          11111111122246678889999999999999999999


Q ss_pred             EeecccCCCceeEEE
Q 035621          310 VLKNELAGSISEMVI  324 (387)
Q Consensus       310 ~~~~~~~~~v~~~~~  324 (387)
                      +++......-+.+.+
T Consensus       522 ~~~~~~g~~a~P~~y  536 (582)
T 1flg_A          522 KFQTGSGIVSPPITW  536 (582)
T ss_dssp             EEECSSCCCSCCEEE
T ss_pred             EecCCCCcccCceEE
Confidence            998653322233444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.29  E-value=2.1e-11  Score=104.65  Aligned_cols=234  Identities=9%  Similarity=-0.102  Sum_probs=150.4

Q ss_pred             eEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEec----------CCCcEEEEeCCCCceeEEccCC-------CCC
Q 035621           65 SVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGG----------LSGNVYAISVPKGDILRSFSAH-------DKP  127 (387)
Q Consensus        65 ~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~-------~~~  127 (387)
                      .|.++|..+++.+..+...... .+.++||+++++++.          .++.|.+||+.+++.+.++...       ...
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~  125 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR  125 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC
Confidence            8999999999999988855444 899999999999886          3678999999999999888643       124


Q ss_pred             eEEEEEcCCCCEEEEEeC--CCcEEE--EeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621          128 VSCLKISPDGSLLISGGD--DGVIAT--VPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC  203 (387)
Q Consensus       128 v~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~  203 (387)
                      ...++++|||++++++..  +..+.+  +|+.            .   +..+... +.   ..+.|++ ...+++.+.|+
T Consensus       126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~------------t---v~~i~v~-~~---~~~~p~g-~~~~~~~~~dg  185 (368)
T 1mda_H          126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGAS------------D---DQLTKSA-SC---FHIHPGA-AATHYLGSCPA  185 (368)
T ss_dssp             TTSEEECTTSSCEEEEECSSSCEEEEEETTTE------------E---EEEEECS-SC---CCCEEEE-TTEEECCCCTT
T ss_pred             cceEEEcCCCCEEEEEccCCCCeEEEEEEchh------------h---ceEEECC-Cc---eEEccCC-CeEEEEEcCCC
Confidence            578999999999998875  457888  8882            2   2232211 11   1223444 24566677788


Q ss_pred             cEEEEeCCC-----CcEEE----EEec-CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEe----ec
Q 035621          204 TCKFWRLLN-----GTHLS----TVTF-PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVT----LA  269 (387)
Q Consensus       204 ~i~iwd~~~-----~~~~~----~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~  269 (387)
                      .+.+.|+.+     ++...    .+.. ..+.   . .+++..++..+. +.+.+.|........... ..+..    ..
T Consensus       186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~-~~~~~~~~~~~  259 (368)
T 1mda_H          186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAA-IDGNESGRKAD  259 (368)
T ss_dssp             SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECC-CCSSCTHHHHT
T ss_pred             CEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEE-EEecccccccc
Confidence            888889876     33221    1111 1222   3 566666666666 999999986422110000 00000    00


Q ss_pred             ccccccEEEEEEecCCCEEEEEeC---------CCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          270 NRHDGVVVSVMMMNEGKNLVSAAE---------DGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       270 ~~~~~~v~~~~~s~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      .........++++|+++.++.+..         ++.+.++|+.+++.+..+....  .+.+|.|+++
T Consensus       260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~D  324 (368)
T 1mda_H          260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQD  324 (368)
T ss_dssp             TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCS
T ss_pred             ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCC
Confidence            000111112689999998776532         2356699999999999887543  5777777653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.28  E-value=9e-10  Score=89.46  Aligned_cols=192  Identities=12%  Similarity=0.089  Sum_probs=138.7

Q ss_pred             ccccCCCcEEEeeCC--CCcEEEEeCCCCceeEeccCCCC-CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            2 LHHLPCNEVILTSSP--EGPITAYNPSSGAILAHFSGSRS-PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         2 l~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      |+|+|++.++++.+.  ++.|.++|+.+++.+..+.-... ....+++.++..+..     .-.++.+.++|..+.+.+.
T Consensus        26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~-----t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQV-----VWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEE-----ETTCSEEEEEETTTTEEEE
T ss_pred             EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEE-----EecCCEEEEEECCCCcEEE
Confidence            568888766665543  57899999999999888753222 234567766555544     4578999999999999888


Q ss_pred             ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCC-----CCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621           79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHD-----KPVSCLKISPDGSLLISGGDDGVIATVP  153 (387)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd  153 (387)
                      .+... .-....+++||+.++++..++.|.++|..+.+.+..+.-..     ..++.+.|. ++...+....++.|.+.|
T Consensus       101 ~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID  178 (266)
T 2iwa_A          101 NFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARIS  178 (266)
T ss_dssp             EEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred             EEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEE
Confidence            88755 22345577788888887778899999999988887765221     236788888 675555555678999999


Q ss_pred             CCcccccCCCCCCCCccceEeeecc-------------CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAH-------------NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG  213 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  213 (387)
                      .            .+.+.+..+...             ....+.|++.|++ +.+++++...+++...++...
T Consensus       179 ~------------~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~-~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          179 A------------KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN-KRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             T------------TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT-TEEEEEETTCSEEEEEEEEEC
T ss_pred             C------------CCCcEEEEEECCCcccccccccccccCceEEEEEcCCC-CEEEEECCCCCeEEEEEEecc
Confidence            9            455555555432             1356899999986 578888888888988887543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.28  E-value=2.2e-09  Score=87.13  Aligned_cols=206  Identities=14%  Similarity=0.131  Sum_probs=141.2

Q ss_pred             CceeEeccCCCCC--ceeEEEcCccceeeeccccC-CCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEe-cC
Q 035621           28 GAILAHFSGSRSP--RRGLTFAGKPFIAASHISPT-TGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTG-GL  103 (387)
Q Consensus        28 ~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~-~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~  103 (387)
                      .+.+.++. |...  ...++|++++.+..+   ++ ..++.|.++|+.+++.+..+..+.......+..+++.|+.. -.
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvs---tg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~   84 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAENDTLFES---TGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECSTTEEEEE---ECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT
T ss_pred             ceEEEEEE-CCCCCCcccEEEeCCCeEEEE---CCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec
Confidence            45566665 4432  579999985432221   12 23689999999999998887755443333344445556554 46


Q ss_pred             CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC----
Q 035621          104 SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN----  179 (387)
Q Consensus       104 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----  179 (387)
                      ++.+.++|..+.+.+.++......  ...+++|++.++++..++.|.++|.            .+......+....    
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~------------~t~~v~~~I~Vg~~~~p  150 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDP------------HTFKLIKKHNVKYNGHR  150 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECT------------TTCCEEEEEECEETTEE
T ss_pred             CCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEEC------------CCCcEEEEEEECCCCcc
Confidence            789999999999998888633111  2335567887777778899999998            3444444444221    


Q ss_pred             -CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC--------------CceeEEEeCCCCCeEEEEc-cC
Q 035621          180 -DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP--------------CAIMGLALDPTETDFFAAG-SD  243 (387)
Q Consensus       180 -~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~-~d  243 (387)
                       ...+.+.+. +  +.+++....++.|.+.|..+++.+..+...              ...+.++|+|+++.+++++ ..
T Consensus       151 ~~~~nele~~-d--g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~  227 (266)
T 2iwa_A          151 VIRLNELEYI-N--GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW  227 (266)
T ss_dssp             CCCEEEEEEE-T--TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred             cccceeEEEE-C--CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence             135677776 3  466666666889999999999999999743              3568999999987666655 58


Q ss_pred             CcEEEEecccc
Q 035621          244 GLIYKGLLKYQ  254 (387)
Q Consensus       244 g~i~i~d~~~~  254 (387)
                      +.++..++...
T Consensus       228 ~~v~~i~l~~~  238 (266)
T 2iwa_A          228 PKLFEIKLHLV  238 (266)
T ss_dssp             SEEEEEEEEEC
T ss_pred             CeEEEEEEecc
Confidence            88998888763

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.26  E-value=7.5e-10  Score=94.66  Aligned_cols=255  Identities=18%  Similarity=0.168  Sum_probs=155.7

Q ss_pred             CCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-C
Q 035621            6 PCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-E   84 (387)
Q Consensus         6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~   84 (387)
                      ++|. |..++.+  |..+|. +++.+..+...........+..+.      +..++.++.+..+|.. ++........ .
T Consensus        69 ~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~------l~v~t~~~~l~~~d~~-g~~~~~~~~~~~  137 (330)
T 3hxj_A           69 KDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIFEDI------LYVTSMDGHLYAINTD-GTEKWRFKTKKA  137 (330)
T ss_dssp             TTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEETTE------EEEECTTSEEEEECTT-SCEEEEEECSSC
T ss_pred             cCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEECCE------EEEEecCCEEEEEcCC-CCEEEEEcCCCc
Confidence            4444 4555554  888886 676655554333323333333222      2235678899999987 7665555433 3


Q ss_pred             CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCC
Q 035621           85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDD  164 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  164 (387)
                      .+.++...+++. +..++.++.|..+|.. ++....+......+.++...+++.+.+ ++  +.|..+|.          
T Consensus       138 ~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d~----------  202 (330)
T 3hxj_A          138 IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAINP----------  202 (330)
T ss_dssp             CCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEECT----------
T ss_pred             eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEECC----------
Confidence            456677777776 5667778899999988 877766665556677788877877544 44  77888873          


Q ss_pred             CCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCC-ceeEEEeCCCCCeEEEEccC
Q 035621          165 KNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC-AIMGLALDPTETDFFAAGSD  243 (387)
Q Consensus       165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d  243 (387)
                         ..............+.++...++   ..+..++.++.|..+| .+++.+..+.... .+..+.+.+++ .|++++.+
T Consensus       203 ---~g~~~~~~~~~~~~~~~~~~~~~---g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~  274 (330)
T 3hxj_A          203 ---DGTEKWNFYAGYWTVTRPAISED---GTIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYD  274 (330)
T ss_dssp             ---TSCEEEEECCSSCCCSCCEECTT---SCEEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTT
T ss_pred             ---CCcEEEEEccCCcceeceEECCC---CeEEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCC
Confidence               22233333334455666666544   2566677788898887 4666666666433 23445555444 67788888


Q ss_pred             CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621          244 GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       244 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  305 (387)
                      |.++.+|. .+.        ..... ......+.++...++|. |..++.+|.+++...+..
T Consensus       275 ggl~~~d~-~g~--------~~~~~-~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          275 GHLYAINP-DGT--------EKWNF-ETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             CEEEEECT-TSC--------EEEEE-ECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred             CCEEEECC-CCc--------EEEEE-EcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence            88999985 321        11111 11234566677777776 555788999998876544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.26  E-value=2.7e-08  Score=82.25  Aligned_cols=250  Identities=10%  Similarity=-0.029  Sum_probs=148.1

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCcee-----EeccCCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            8 NEVILTSSPEGPITAYNPSSGAIL-----AHFSGSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      |.+|+.+.. +.|+.+++......     ..+......+..++++++ ..+...    ....+.|..++.........+.
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~----d~~~~~I~~~~~~g~~~~~~~~   75 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWT----DISEPSIGRASLHGGEPTTIIR   75 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEE----ETTTTEEEEEESSSCCCEEEEC
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEE----ECCCCEEEEEecCCCCcEEEEE
Confidence            345666554 57899988654321     112212234678999873 322222    3457899999987655433332


Q ss_pred             C-CCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCc
Q 035621           82 V-PEPVAPLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD---DGVIATVPIFQ  156 (387)
Q Consensus        82 ~-~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~  156 (387)
                      . ......+++.+++..|+.+ ...+.|.++++..................++++|++..|+.+..   .+.|..+++..
T Consensus        76 ~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg  155 (267)
T 1npe_A           76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (267)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence            2 2567899999976665554 45678999998654332222222356789999997666655554   36788877621


Q ss_pred             ccccCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCC
Q 035621          157 LVDEHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTET  235 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  235 (387)
                                   .....+. ........+++.+++ +.++++-...+.|..+|+........+........++..  +.
T Consensus       156 -------------~~~~~~~~~~~~~P~gia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~  219 (267)
T 1npe_A          156 -------------TNRRILAQDNLGLPNGLTFDAFS-SQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GK  219 (267)
T ss_dssp             -------------CCCEEEECTTCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TT
T ss_pred             -------------CCcEEEEECCCCCCcEEEEcCCC-CEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CC
Confidence                         1111111 223456788998864 355566666789999998765443333333445666654  45


Q ss_pred             eEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC
Q 035621          236 DFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK  286 (387)
Q Consensus       236 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  286 (387)
                      .++++. ..+.|..+|..++.        ....+..+.......+++.|++.
T Consensus       220 ~lyva~~~~~~v~~~d~~~g~--------~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          220 NLYYTDWKTNSVIAMDLAISK--------EMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTE--------EEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEEEEECCCCeEEEEeCCCCC--------ceEEEccccccccceeeecCccC
Confidence            555554 56899999987632        22222212222467788887764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.21  E-value=1.3e-08  Score=93.29  Aligned_cols=246  Identities=13%  Similarity=0.029  Sum_probs=141.7

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCC----Ccee-EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRS----PRRG-LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV   82 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~   82 (387)
                      +..++.++.|+.|..+|..+|+.+.+......    .+.+ .....+..+....-.-.+.++.|..+|..+++.+..+..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            55777888899999999999998876643210    1111 111222222211000001278999999999988765543


Q ss_pred             CCCe---------------------------------------eeEEeccCCCEEEEecCC----------------CcE
Q 035621           83 PEPV---------------------------------------APLATTADGSYLFTGGLS----------------GNV  107 (387)
Q Consensus        83 ~~~v---------------------------------------~~~~~~~~~~~l~~~~~d----------------g~i  107 (387)
                      ..+.                                       ..+++.++...++.+..+                +.|
T Consensus       195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v  274 (571)
T 2ad6_A          195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence            2211                                       235666766677776532                259


Q ss_pred             EEEeCCCCceeEEccC--CC--------CCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCccccc---CCCC-CC----
Q 035621          108 YAISVPKGDILRSFSA--HD--------KPVSCLKISPDGS---LLISGGDDGVIATVPIFQLVDE---HTDD-KN----  166 (387)
Q Consensus       108 ~i~d~~~~~~~~~~~~--~~--------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~---~~~~-~~----  166 (387)
                      ..+|.++|+.+..++.  |.        .++ -+...++|+   .++.++.+|.+.++|.......   .... .+    
T Consensus       275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~  353 (571)
T 2ad6_A          275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  353 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccccc
Confidence            9999999998877652  21        122 122224664   5778889999999997432110   0000 00    


Q ss_pred             ---CCccceE--------------eeeccCC--CeEEEEEeeCCCCceEEEEe---------------------------
Q 035621          167 ---PDDLMLQ--------------KFVAHND--SVTAITCCIGSFNSIIISCS---------------------------  200 (387)
Q Consensus       167 ---~~~~~~~--------------~~~~~~~--~i~~~~~~~~~~~~~l~s~~---------------------------  200 (387)
                         ....++.              ......+  .-..++++|+.  .+++...                           
T Consensus       354 ~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~--g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES--RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC--CEEEEEchhccccccccccccccCCcccccccee
Confidence               0000000              0000000  00124455543  3333322                           


Q ss_pred             ----------CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccc
Q 035621          201 ----------MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSR  256 (387)
Q Consensus       201 ----------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  256 (387)
                                .++.|..||+.+++.+.++.....+....+...+..+++++.||.++.+|.++++.
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence                      35789999999999998887655544444444567888899999999999988543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.19  E-value=1.6e-07  Score=77.56  Aligned_cols=238  Identities=8%  Similarity=-0.067  Sum_probs=146.2

Q ss_pred             CeEEEEEccCCCccc-----ccC-CCCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC
Q 035621           64 GSVHLYNLWSSTPLH-----NIP-VPEPVAPLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD  136 (387)
Q Consensus        64 ~~v~vw~~~~~~~~~-----~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~  136 (387)
                      +.|+.++++......     .+. ....+..++++++++.|+.+ ..++.|..+++........+.........++++|+
T Consensus        10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~   89 (267)
T 1npe_A           10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL   89 (267)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred             CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec
Confidence            467778876543211     111 12356789999976666655 45679999998766544333333356899999997


Q ss_pred             CCEEEEE-eCCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeC--CCcEEEEeCCC
Q 035621          137 GSLLISG-GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSM--DCTCKFWRLLN  212 (387)
Q Consensus       137 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~  212 (387)
                      +..++.+ ...+.|.++++..            . ....+ .........+++.|+. +.++++...  .+.|..+++..
T Consensus        90 ~~~lyv~d~~~~~I~~~~~~g------------~-~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~~~~~dg  155 (267)
T 1npe_A           90 GRTIFWTDSQLDRIEVAKMDG------------T-QRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDG  155 (267)
T ss_dssp             TTEEEEEETTTTEEEEEETTS------------C-SCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTS
T ss_pred             CCeEEEEECCCCEEEEEEcCC------------C-CEEEEEECCCCCccEEEEeeCC-CEEEEEECCCCCcEEEEEecCC
Confidence            6555544 4567899988721            1 11111 1122456789998854 344444433  46888888754


Q ss_pred             CcEEEEEe--cCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEE
Q 035621          213 GTHLSTVT--FPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLV  289 (387)
Q Consensus       213 ~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  289 (387)
                      . ....+.  .-.....++++|++..|+.+. ..+.|.+++......         ..+.. .......++.. .+..++
T Consensus       156 ~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~---------~~~~~-~~~~P~gi~~d-~~~lyv  223 (267)
T 1npe_A          156 T-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR---------RKVLE-GLQYPFAVTSY-GKNLYY  223 (267)
T ss_dssp             C-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE---------EEEEE-CCCSEEEEEEE-TTEEEE
T ss_pred             C-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce---------EEEec-CCCCceEEEEe-CCEEEE
Confidence            3 233332  234678999999887776655 468899999875221         11111 12334566664 344444


Q ss_pred             EEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          290 SAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       290 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      +....+.|.++|..+++.+..+.......+.++++.+.
T Consensus       224 a~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          224 TDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             EETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             EECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence            55566899999999999998887543335777777654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.18  E-value=7.5e-09  Score=96.90  Aligned_cols=248  Identities=11%  Similarity=0.136  Sum_probs=148.5

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCC----Ccee-EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRS----PRRG-LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++..++.++.|+.|..+|..+|+.+.++.....    .+.+ ..+..+..+....-.-.+.+|.|..+|..+|+.+..+.
T Consensus       116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            355778888899999999999999877754211    1111 11112222211100000136899999999998877654


Q ss_pred             CC--C------------------------------CeeeEEeccCCCEEEEecCCC-------------------cEEEE
Q 035621           82 VP--E------------------------------PVAPLATTADGSYLFTGGLSG-------------------NVYAI  110 (387)
Q Consensus        82 ~~--~------------------------------~v~~~~~~~~~~~l~~~~~dg-------------------~i~i~  110 (387)
                      ..  .                              ....+++.|+...++.+..++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            21  0                              012468888888888887765                   39999


Q ss_pred             eCCCCceeEEccC--CC-------CCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCcccccCCCCCC----------CC
Q 035621          111 SVPKGDILRSFSA--HD-------KPVSCLKISPDGS---LLISGGDDGVIATVPIFQLVDEHTDDKN----------PD  168 (387)
Q Consensus       111 d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~  168 (387)
                      |..+|+.+..++.  |.       .+.....+..+++   .++.++.+|.++++|.............          ..
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            9999999877753  22       2222223333564   6889999999999998432111000000          00


Q ss_pred             ccce------------EeeeccCC--CeEEEEEeeCCCCceEEE------------------------------------
Q 035621          169 DLML------------QKFVAHND--SVTAITCCIGSFNSIIIS------------------------------------  198 (387)
Q Consensus       169 ~~~~------------~~~~~~~~--~i~~~~~~~~~~~~~l~s------------------------------------  198 (387)
                      ..++            ....+..+  .-..++++|..  .+++.                                    
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~--g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~  433 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT--GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA  433 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT--TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCC--CEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence            0000            00000000  00113444442  22222                                    


Q ss_pred             EeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccc
Q 035621          199 CSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSR  256 (387)
Q Consensus       199 ~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  256 (387)
                      ...+|.|..||+.+++.+.++..........+...+..+++++.|+.++.||.++++.
T Consensus       434 ~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~  491 (668)
T 1kv9_A          434 AVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA  491 (668)
T ss_dssp             GGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence            1234889999999999998888666655555666788999999999999999988543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.14  E-value=5.2e-08  Score=89.35  Aligned_cols=237  Identities=12%  Similarity=0.076  Sum_probs=138.3

Q ss_pred             EEeeCCCCcEEEEeCCCCceeEeccCCCC----Ccee-EEEcCccceeeeccccCC------CCCeEEEEEccCCCcccc
Q 035621           11 ILTSSPEGPITAYNPSSGAILAHFSGSRS----PRRG-LTFAGKPFIAASHISPTT------GSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus        11 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~~~~~~~~~------~d~~v~vw~~~~~~~~~~   79 (387)
                      ++.++.|+.|..+|..+|+.+........    .+.+ ..+..+.      ++.++      .++.|+.+|..+++.+..
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~------V~vg~~g~e~g~~g~v~A~D~~TG~~~W~  197 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDK------VIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE------EEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCE------EEEEecccccCCCCeEEEEECCCCcEEEE
Confidence            78888899999999999998876543220    1111 1112221      12222      479999999999988766


Q ss_pred             cCCCCCe---------------------------------------eeEEeccCCCEEEEecCC----------------
Q 035621           80 IPVPEPV---------------------------------------APLATTADGSYLFTGGLS----------------  104 (387)
Q Consensus        80 ~~~~~~v---------------------------------------~~~~~~~~~~~l~~~~~d----------------  104 (387)
                      +....+.                                       ..+++.++...++.+..+                
T Consensus       198 ~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~  277 (599)
T 1w6s_A          198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWT  277 (599)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred             EcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcccc
Confidence            5533211                                       134666777788877655                


Q ss_pred             CcEEEEeCCCCceeEEccC--CC--------CCeEEEEEc-CCC---CEEEEEeCCCcEEEEeCCcccccCCCCCC----
Q 035621          105 GNVYAISVPKGDILRSFSA--HD--------KPVSCLKIS-PDG---SLLISGGDDGVIATVPIFQLVDEHTDDKN----  166 (387)
Q Consensus       105 g~i~i~d~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----  166 (387)
                      +.|..+|.++|+.+..++.  |.        .++. +... .+|   ..++.++.+|.+.++|.............    
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  356 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN  356 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcc
Confidence            3799999999999877653  21        1121 2222 467   46777889999999998432111000000    


Q ss_pred             -------CCccceE--------------eeeccC--CCeEEEEEeeCCCCceEEEE------------------------
Q 035621          167 -------PDDLMLQ--------------KFVAHN--DSVTAITCCIGSFNSIIISC------------------------  199 (387)
Q Consensus       167 -------~~~~~~~--------------~~~~~~--~~i~~~~~~~~~~~~~l~s~------------------------  199 (387)
                             ....++.              .+.+..  ..-..++++|..  .+++..                        
T Consensus       357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~  434 (599)
T 1w6s_A          357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR--ELFFMGINHICMDWEPFMLPYKAGQFFVGA  434 (599)
T ss_dssp             SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC--CEEEEeccccceeeecccccccCCcceecc
Confidence                   0000000              000000  000122333321  111110                        


Q ss_pred             ---------e------CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccc
Q 035621          200 ---------S------MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSR  256 (387)
Q Consensus       200 ---------~------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  256 (387)
                               +      .+|.|..||+.+++.+.+.....+...-.+...+..++.++.||.++.+|.++++.
T Consensus       435 ~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~  506 (599)
T 1w6s_A          435 TLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (599)
T ss_dssp             EEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence                     1      35789999999999988887554433222334577888899999999999998543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.14  E-value=1.3e-08  Score=81.54  Aligned_cols=190  Identities=13%  Similarity=0.131  Sum_probs=132.9

Q ss_pred             ceeEeccCCCCC--ceeEEEcCccceeeeccccCCCCC--eEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEec-C
Q 035621           29 AILAHFSGSRSP--RRGLTFAGKPFIAASHISPTTGSG--SVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGG-L  103 (387)
Q Consensus        29 ~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~d~--~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~  103 (387)
                      +.+.++. |...  ...+.|+.+..+.+     ++.+|  .|+.+|+++++.+..+..+.........++++.|+... .
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~~~~Lyes-----tG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~  105 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYRNGYFYES-----TGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK  105 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEETTEEEEE-----EEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred             EEEEEec-CCCCcccceEEEECCEEEEE-----CCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee
Confidence            4566664 4444  47888985433332     44444  89999999999998888776666555555566666554 5


Q ss_pred             CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc--C--
Q 035621          104 SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH--N--  179 (387)
Q Consensus       104 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~--  179 (387)
                      ++.+.+||..+.+.+.++...... ..++  ++++.|+.+..++.|.++|.            .+...+..+...  .  
T Consensus       106 ~~~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp------------~T~~v~~~I~V~~~g~~  170 (262)
T 3nol_A          106 NGLGFVWNIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDP------------ESLTPVRTITVTAHGEE  170 (262)
T ss_dssp             SSEEEEEETTTCCEEEEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECT------------TTCSEEEEEECEETTEE
T ss_pred             CCEEEEEECccCcEEEEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcC------------CCCeEEEEEEeccCCcc
Confidence            789999999999999988743222 2333  57777777777788999998            344445544432  1  


Q ss_pred             -CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC-------------CceeEEEeCCCCCeEEEEcc
Q 035621          180 -DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-------------CAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       180 -~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~~  242 (387)
                       ..++.+.+. +  +.+.+..-.+..|.+.|..+++.+..+...             ...+.++|+|+++.|++.+.
T Consensus       171 ~~~lNELe~~-~--G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          171 LPELNELEWV-D--GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             CCCEEEEEEE-T--TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ccccceeEEE-C--CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence             234456665 3  466666667889999999999999998742             24689999999888887765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.11  E-value=2.9e-08  Score=79.58  Aligned_cols=189  Identities=14%  Similarity=0.173  Sum_probs=131.5

Q ss_pred             ceeEeccCCCCC--ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEE-ecCCC
Q 035621           29 AILAHFSGSRSP--RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFT-GGLSG  105 (387)
Q Consensus        29 ~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg  105 (387)
                      +.+.++. |...  ...+.|+.+..+.+     .+.+|.|+++|+++++.+..+ .+.........++++.|+. ...++
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~~~~Ly~s-----tG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~  116 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFHQGHFFES-----TGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEG  116 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEETTEEEEE-----ETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSC
T ss_pred             EEEEEEc-CCCccccceEEEECCEEEEE-----cCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCC
Confidence            4556664 4433  47888887544443     577888999999999998888 6666555334444444444 44678


Q ss_pred             cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc--C---C
Q 035621          106 NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH--N---D  180 (387)
Q Consensus       106 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~---~  180 (387)
                      .+.+||..+.+.+.++..... -..++  ++++.|+.+..++.|.++|.            .+.+.+..+...  .   .
T Consensus       117 ~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp------------~T~~v~~~I~V~~~g~~v~  181 (268)
T 3nok_A          117 LLFTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEP------------DGFALVGAVQVKLRGQPVE  181 (268)
T ss_dssp             EEEEEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECT------------TTCCEEEEEECEETTEECC
T ss_pred             EEEEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcC------------CCCeEEEEEEeCCCCcccc
Confidence            999999999999998874322 23444  46788888877899999998            344444444332  2   2


Q ss_pred             CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC--------------CceeEEEeCCCCCeEEEEcc
Q 035621          181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP--------------CAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~~  242 (387)
                      .++.+.|. +  +.+++....+..|.+.|..+++.+..+...              ...+.++++|+++.|++.+.
T Consensus       182 ~lNeLe~~-d--G~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          182 LINELECA-N--GVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             CEEEEEEE-T--TEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             cccccEEe-C--CEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            34566665 3  466666656889999999999999988732              35689999998877776654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.10  E-value=1.3e-08  Score=81.58  Aligned_cols=177  Identities=11%  Similarity=0.090  Sum_probs=122.9

Q ss_pred             ccccCCCcEEEeeCCCC--cEEEEeCCCCceeEeccCCCCC-ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            2 LHHLPCNEVILTSSPEG--PITAYNPSSGAILAHFSGSRSP-RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      |.|+ ++.++.+.+.+|  .|+++|+++++.+.++...... ...++...+..+..     .-.++.+.+||..+.+.+.
T Consensus        48 L~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~l-----tw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           48 FFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGL-----TWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEE-----ESSSSEEEEEETTTCCEEE
T ss_pred             EEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEE-----EeeCCEEEEEECccCcEEE
Confidence            3566 677777777665  8999999999998888644332 23466666655554     3478999999999999999


Q ss_pred             ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCC--C---CCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621           79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH--D---KPVSCLKISPDGSLLISGGDDGVIATVP  153 (387)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd  153 (387)
                      ++..+.  ....+.++++.|+....++.|.++|..+.+.+..+...  .   ..++.+.|. +|+..+..-.+..|.+.|
T Consensus       122 ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vID  198 (262)
T 3nol_A          122 SFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRID  198 (262)
T ss_dssp             EEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred             EEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence            888654  33344467888887777788999999999888876532  1   334567776 676555555678899998


Q ss_pred             CCcccccCCCCCCCCccceEeeec------------cCCCeEEEEEeeCCCCceEEEEe
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVA------------HNDSVTAITCCIGSFNSIIISCS  200 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~~~l~s~~  200 (387)
                      .            .+++.+..+..            .....+.|++.|+. +.++++|-
T Consensus       199 p------------~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~-~~lfVTGK  244 (262)
T 3nol_A          199 P------------ETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH-HRLFVTGK  244 (262)
T ss_dssp             T------------TTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT-TEEEEEET
T ss_pred             C------------CCCcEEEEEECCcCccccccccCcCCceEEEEEcCCC-CEEEEECC
Confidence            8            34444443332            12356899999986 45666653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.06  E-value=1.3e-07  Score=75.22  Aligned_cols=190  Identities=14%  Similarity=0.156  Sum_probs=132.6

Q ss_pred             ceeEeccCCCCC--ceeEEEcCccceeeeccccCCCC--CeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEe-cC
Q 035621           29 AILAHFSGSRSP--RRGLTFAGKPFIAASHISPTTGS--GSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTG-GL  103 (387)
Q Consensus        29 ~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~d--~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~  103 (387)
                      +.+.+++ |...  ...+.|+++..+.+     .+..  ..|+.+|+.+++.+..+..+.........+.++.|+.. ..
T Consensus        10 ~v~~~~p-hd~~~ftqGL~~~~~~Lyes-----tG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~   83 (243)
T 3mbr_X           10 RVVKRYP-HDTTAFTEGLFYLRGHLYES-----TGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR   83 (243)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEETTEEEEE-----ECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS
T ss_pred             EEEEEcC-CCCccccccEEEECCEEEEE-----CCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee
Confidence            4566664 5443  66899998554444     3443  58999999999999988877766555555555555544 46


Q ss_pred             CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccC----
Q 035621          104 SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN----  179 (387)
Q Consensus       104 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----  179 (387)
                      ++.+.+||..+.+.+.++.....+ ..++  +++..|+.+..++.|.++|.            .+...+.++....    
T Consensus        84 ~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp------------~t~~~~~~I~V~~~g~~  148 (243)
T 3mbr_X           84 NHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDP------------DTLQQVGSIKVTAGGRP  148 (243)
T ss_dssp             SSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECT------------TTCCEEEEEECEETTEE
T ss_pred             CCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeC------------CCCeEEEEEEEccCCcc
Confidence            789999999999999988743322 3444  46777777777889999998            3444444444321    


Q ss_pred             -CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC--------------CceeEEEeCCCCCeEEEEcc
Q 035621          180 -DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP--------------CAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       180 -~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~~  242 (387)
                       ..++.+.+. +  +.+++..-.+..|.+.|..+++.+..+...              ...+.++++|+++.|++.+.
T Consensus       149 ~~~lNeLe~~-~--G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          149 LDNLNELEWV-N--GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             CCCEEEEEEE-T--TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             cccceeeEEe-C--CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence             234555554 2  466666656889999999999999988722              24689999998887777664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.04  E-value=2.2e-08  Score=80.24  Aligned_cols=174  Identities=9%  Similarity=0.012  Sum_probs=124.1

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCc--eeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPR--RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      .|+ ++.++.+.+.+|.|+++|+++++.+.++ -. ...  ..+++.++..+..     .-.++.+.+||..+.+.+.++
T Consensus        61 ~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~l-----tw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           61 VFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQL-----TWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEE-----ESSSCEEEEEETTTTEEEEEE
T ss_pred             EEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEE-----EccCCEEEEEECCcCcEEEEE
Confidence            455 4667778888899999999999998877 22 223  3477777666555     357899999999999999988


Q ss_pred             CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC--CC---CCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA--HD---KPVSCLKISPDGSLLISGGDDGVIATVPIF  155 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  155 (387)
                      .....-..++  ++++.|+.+..++.|.++|.++.+.+.++.-  +.   ..++.+.|. +|+..+..-.+..|.+.|. 
T Consensus       133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp-  208 (268)
T 3nok_A          133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP-  208 (268)
T ss_dssp             ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT-
T ss_pred             eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC-
Confidence            8654434444  6788888887789999999999998887753  22   245677777 6765555556788999988 


Q ss_pred             cccccCCCCCCCCccceEeeec-------------cCCCeEEEEEeeCCCCceEEEEe
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVA-------------HNDSVTAITCCIGSFNSIIISCS  200 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~l~s~~  200 (387)
                                 .+++.+..+..             ...-.+.|++.|+. +++++||-
T Consensus       209 -----------~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~-~rlfVTGK  254 (268)
T 3nok_A          209 -----------ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS-GRIFMTGK  254 (268)
T ss_dssp             -----------TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT-CCEEEEET
T ss_pred             -----------CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCC-CEEEEeCC
Confidence                       34444444332             12356899999876 46777664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.04  E-value=1.2e-06  Score=76.28  Aligned_cols=241  Identities=9%  Similarity=-0.055  Sum_probs=151.3

Q ss_pred             CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEE
Q 035621           62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLL  140 (387)
Q Consensus        62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  140 (387)
                      ....|+..++..............+..++|.+.+..|+.. ...+.|..+++........+.........+++.+.+..|
T Consensus        94 ~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l  173 (386)
T 3v65_B           94 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL  173 (386)
T ss_dssp             CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEE
T ss_pred             cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeE
Confidence            3456788887766555555555678899999866666554 466789999987665444443333456788998755544


Q ss_pred             -EEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-CcEEEEeCCCCcEEEE
Q 035621          141 -ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-CTCKFWRLLNGTHLST  218 (387)
Q Consensus       141 -~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~  218 (387)
                       ++-...+.|.+.++.            .......+.........+++.|.. +.++++-... +.|..+++........
T Consensus       174 Y~~d~~~~~I~~~~~d------------g~~~~~l~~~~l~~P~giavdp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~  240 (386)
T 3v65_B          174 YWTDSGTSRIEVANLD------------GAHRKVLLWQSLEKPRAIALHPME-GTIYWTDWGNTPRIEASSMDGSGRRII  240 (386)
T ss_dssp             EEEETTTTEEEECBTT------------SCSCEEEECSSCSCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             EEEcCCCCeEEEEeCC------------CCceEEeecCCCCCCcEEEEEcCC-CeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence             454556778887762            111122222233556889998764 4555555445 7888888765433333


Q ss_pred             Ee-cCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCc
Q 035621          219 VT-FPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS  296 (387)
Q Consensus       219 ~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  296 (387)
                      .. .-...+.++++|++..|+.+. ..+.|..+++.....         ..+..........+++. .+.++++-...+.
T Consensus       241 ~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~---------~~~~~~~~~~P~giav~-~~~ly~td~~~~~  310 (386)
T 3v65_B          241 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---------KAVISQGLPHPFAITVF-EDSLYWTDWHTKS  310 (386)
T ss_dssp             ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC---------EEEECSSCSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee---------EEEEECCCCCceEEEEE-CCEEEEeeCCCCe
Confidence            32 234578999998777766664 467899988764211         11111223456788883 4556666667888


Q ss_pred             EEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          297 VYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       297 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      |..++..+++.+..+..... .+.++.+..
T Consensus       311 V~~~~~~~G~~~~~i~~~~~-~p~gi~v~~  339 (386)
T 3v65_B          311 INSANKFTGKNQEIIRNKLH-FPMDIHTLH  339 (386)
T ss_dssp             EEEEETTTCCSCEEEECSCS-CCCCEEEES
T ss_pred             EEEEECCCCcceEEEccCCC-CCceEEEEc
Confidence            99999778887777765433 556665543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.04  E-value=3.2e-06  Score=81.24  Aligned_cols=273  Identities=9%  Similarity=0.066  Sum_probs=166.6

Q ss_pred             cCCCcEEEeeCCCCcEEEEeCCCCceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--
Q 035621            5 LPCNEVILTSSPEGPITAYNPSSGAILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP--   81 (387)
Q Consensus         5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--   81 (387)
                      .+++++.+ |+.++-|..|+..+++..... ..+...|.++...+++.+-.     ++.++-+..||..+++......  
T Consensus       181 d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-----gt~~~Gl~~~~~~~~~~~~~~~~~  254 (795)
T 4a2l_A          181 RQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-----ATEGAGLFLINPKTKEIKNYLHSP  254 (795)
T ss_dssp             EETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-----EEBSSCEEEEETTTTEEEEECCCT
T ss_pred             CCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-----EECCCCeEEEeCCCCeEEEeecCC
Confidence            34565444 555555889998776654322 12345578887766443332     3334458888876654322111  


Q ss_pred             ------CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC-------CCCCeEEEEEcCCCCEEEEEeCCCc
Q 035621           82 ------VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA-------HDKPVSCLKISPDGSLLISGGDDGV  148 (387)
Q Consensus        82 ------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~  148 (387)
                            ....|.++...++|.+.+ |+.+ -|.+||..+++.......       ....|.++...++|. |..|+.++-
T Consensus       255 ~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~G  331 (795)
T 4a2l_A          255 SNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGG  331 (795)
T ss_dssp             TCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSC
T ss_pred             CCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCC
Confidence                  135688999988887554 4445 489999877665433211       235799999998886 556777777


Q ss_pred             EEEEeCCcccccCCCCCCCCccceEeee-------ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 035621          149 IATVPIFQLVDEHTDDKNPDDLMLQKFV-------AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-  220 (387)
Q Consensus       149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-  220 (387)
                      |..|+....             ....+.       .....|.++...++  + .|..|+.++-|..||..+++...... 
T Consensus       332 l~~~~~~~~-------------~~~~~~~~~~~~~l~~~~V~~i~~d~~--g-~lWiGt~~~Gl~~~~~~~~~~~~~~~~  395 (795)
T 4a2l_A          332 LNYYHPIRN-------------RFKNIRNIPYKNSLSDNVVSCIVEDKD--K-NLWIGTNDGGLNLYNPITQRFTSYTLQ  395 (795)
T ss_dssp             EEEECGGGG-------------SSEEECCCTTSSSCSCSSEEEEEECTT--S-CEEEEESSSCEEEECTTTCCEEEECCC
T ss_pred             eEEeCCCcc-------------cceEEcCCCCCCCCCCCeeEEEEECCC--C-CEEEEECCCCeEEEcCCCCcEEEEecC
Confidence            888876221             111111       12345777765544  3 45567777779999988765433211 


Q ss_pred             --------cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621          221 --------FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA  292 (387)
Q Consensus       221 --------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  292 (387)
                              ....|.+++..++++.|.+|+.++-+..+|..++..........     ......|.++...++|.+.+.. 
T Consensus       396 ~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~-----~l~~~~v~~i~~d~~g~lwigt-  469 (795)
T 4a2l_A          396 EDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS-----QLVNENVYAILPDGEGNLWLGT-  469 (795)
T ss_dssp             ------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS-----CCSCSCEEEEEECSSSCEEEEE-
T ss_pred             CCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC-----CcCCCeeEEEEECCCCCEEEEe-
Confidence                    13568899988888757778877779999987643221111000     0234578999998888765544 


Q ss_pred             CCCcEEEEECCCccEEE
Q 035621          293 EDGSVYIWEIEKRQVVM  309 (387)
Q Consensus       293 ~dg~i~iwd~~~~~~~~  309 (387)
                      .+ -|.+||..+++...
T Consensus       470 ~~-Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          470 LS-ALVRFNPEQRSFTT  485 (795)
T ss_dssp             SS-CEEEEETTTTEEEE
T ss_pred             cC-ceeEEeCCCCeEEE
Confidence            44 58899988776543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.04  E-value=1.5e-06  Score=74.54  Aligned_cols=241  Identities=8%  Similarity=-0.060  Sum_probs=150.1

Q ss_pred             CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE-
Q 035621           62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL-  139 (387)
Q Consensus        62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-  139 (387)
                      ....|+..++..............+..++|.+.+..|+.. ...+.|..+++........+.........+++.+.+.. 
T Consensus        51 ~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l  130 (349)
T 3v64_C           51 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL  130 (349)
T ss_dssp             CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred             cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeE
Confidence            3455777777655544444445668899999866666655 45678999998766544444333345678999985554 


Q ss_pred             EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-CcEEEEeCCCCcEEEE
Q 035621          140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-CTCKFWRLLNGTHLST  218 (387)
Q Consensus       140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~  218 (387)
                      .++-...+.|.+.++.            .................+++.|.. +.++++-... +.|..+++........
T Consensus       131 y~~d~~~~~I~~~~~d------------G~~~~~l~~~~l~~P~~iavdp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~  197 (349)
T 3v64_C          131 YWTDSGTSRIEVANLD------------GAHRKVLLWQSLEKPRAIALHPME-GTIYWTDWGNTPRIEASSMDGSGRRII  197 (349)
T ss_dssp             EEEETTTTEEEEEETT------------SCSCEEEECTTCSCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEES
T ss_pred             EEEcCCCCeEEEEcCC------------CCceEEEEeCCCCCcceEEEecCc-CeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence            4555566789888872            111112222333456889998864 4555565555 7888888764332222


Q ss_pred             Ee-cCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCc
Q 035621          219 VT-FPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS  296 (387)
Q Consensus       219 ~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  296 (387)
                      +. .-...+.++++|++..|+.+. ..+.|..+++.....         ..+..........+++. .+..+++-...+.
T Consensus       198 ~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~---------~~~~~~~~~~P~giav~-~~~ly~td~~~~~  267 (349)
T 3v64_C          198 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---------KAVISQGLPHPFAITVF-EDSLYWTDWHTKS  267 (349)
T ss_dssp             CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------EEEECSSCSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce---------EEEEeCCCCCceEEEEE-CCEEEEecCCCCe
Confidence            22 234578999998777776664 467899998764211         11111223456778883 4556666667788


Q ss_pred             EEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          297 VYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       297 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      |..++..+|+.+..+..... .+.++.+..
T Consensus       268 V~~~~~~~G~~~~~i~~~~~-~p~gi~v~~  296 (349)
T 3v64_C          268 INSANKFTGKNQEIIRNKLH-FPMDIHTLH  296 (349)
T ss_dssp             EEEEETTTCCSCEEEECSCS-CCCCEEEEC
T ss_pred             EEEEEccCCCccEEeccCCC-CCceEEEEc
Confidence            99999777877777764433 456665543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.00  E-value=5.9e-06  Score=69.89  Aligned_cols=240  Identities=13%  Similarity=0.005  Sum_probs=147.7

Q ss_pred             CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCC----CceeEEccCCCCCeEEEEEcCCC
Q 035621           63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTG-GLSGNVYAISVPK----GDILRSFSAHDKPVSCLKISPDG  137 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~  137 (387)
                      ...|+..|+...+....+.....+..++|.+.++.|+.. ..++.|..+++..    ......+.........+++.+.+
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            456888888877665555555678899999876666555 4568999999875    22222233223456889998755


Q ss_pred             CEE-EEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-CcEEEEeCCCCcE
Q 035621          138 SLL-ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-CTCKFWRLLNGTH  215 (387)
Q Consensus       138 ~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~  215 (387)
                      ..| ++-...+.|.++++.            .................+++.|.. +.++++.... +.|..+++.. ..
T Consensus        89 ~~ly~~d~~~~~I~~~~~~------------g~~~~~~~~~~~~~P~~iavdp~~-g~ly~~d~~~~~~I~~~~~dG-~~  154 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTK------------GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNG-VD  154 (316)
T ss_dssp             TEEEEEETTTTEEEEEETT------------SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTS-CC
T ss_pred             CeEEEEECCCCEEEEEeCC------------CCceEEEEECCCCCcceEEeCCCC-CEEEEEccCCCCeEEEEcCCC-CC
Confidence            544 454567889998872            111111222233466889998764 3455554333 6888888753 33


Q ss_pred             EEEEe--cCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621          216 LSTVT--FPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA  292 (387)
Q Consensus       216 ~~~~~--~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  292 (387)
                      ...+.  .-...+.++++|++..|+.+. ..+.|..+|+......      .+... .........+++. .+.++++-.
T Consensus       155 ~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~------~~~~~-~~~~~~P~giav~-~~~ly~~d~  226 (316)
T 1ijq_A          155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK------TILED-EKRLAHPFSLAVF-EDKVFWTDI  226 (316)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE------EEEEC-TTTTSSEEEEEEE-TTEEEEEET
T ss_pred             eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE------EEeec-CCccCCcEEEEEE-CCEEEEEEC
Confidence            33332  235678999999877776665 4678999998642111      11111 1122346778885 455666666


Q ss_pred             CCCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621          293 EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       293 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  325 (387)
                      ..+.|..++..+++.+..+..... .+.+|.+.
T Consensus       227 ~~~~V~~~~~~~g~~~~~i~~~~~-~p~~i~v~  258 (316)
T 1ijq_A          227 INEAIFSANRLTGSDVNLLAENLL-SPEDMVLF  258 (316)
T ss_dssp             TTTEEEEEETTTCCCCEEEECSCS-CCCCEEEE
T ss_pred             CCCeEEEEeCCCCcceEEEecCCC-CceEEEEe
Confidence            778999999888887777764433 34555444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.99  E-value=1.7e-07  Score=85.97  Aligned_cols=242  Identities=10%  Similarity=0.048  Sum_probs=138.5

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCC----Cce-eEEEcCc---cceeeeccccCC------CCCeEEEEEccC
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRS----PRR-GLTFAGK---PFIAASHISPTT------GSGSVHLYNLWS   73 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~-~~~~~~~---~~~~~~~~~~~~------~d~~v~vw~~~~   73 (387)
                      +..++.++.|+.|..+|.++|+.+........    .+. ......+   +.   ..++.++      .++.|..+|..+
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~---~~v~vg~~~~e~~~~g~v~alD~~t  193 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGK---VLLIHGSSGDEFGVVGRLFARDPDT  193 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCC---EEEEECCBCGGGCCBCEEEEECTTT
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCc---EEEEEeccccccCCCCEEEEEECCC
Confidence            45677788899999999999999876653321    111 1111111   00   0222232      478999999999


Q ss_pred             CCcccccCCCC------------------------------------------CeeeEEeccCCCEEEEecC--------
Q 035621           74 STPLHNIPVPE------------------------------------------PVAPLATTADGSYLFTGGL--------  103 (387)
Q Consensus        74 ~~~~~~~~~~~------------------------------------------~v~~~~~~~~~~~l~~~~~--------  103 (387)
                      ++.+.......                                          .-..+++.|+...++.+..        
T Consensus       194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~  273 (582)
T 1flg_A          194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW  273 (582)
T ss_dssp             CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred             CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence            98766443211                                          0023566677777776653        


Q ss_pred             ------------C----CcEEEEeCCCCceeEEccC--CC--------CCeEEEEEc-CCCC---EEEEEeCCCcEEEEe
Q 035621          104 ------------S----GNVYAISVPKGDILRSFSA--HD--------KPVSCLKIS-PDGS---LLISGGDDGVIATVP  153 (387)
Q Consensus       104 ------------d----g~i~i~d~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~iwd  153 (387)
                                  |    +.|..+|..+|+.+..++.  |.        .++. +... .+|+   .++.++.+|.++++|
T Consensus       274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD  352 (582)
T 1flg_A          274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVD  352 (582)
T ss_dssp             GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred             ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEE
Confidence                        2    5799999999999887642  32        1221 2221 4664   788899999999999


Q ss_pred             CCccccc---CCCC-CC-------CCccce--------------------EeeeccCC--CeEEEEEeeCCCCceEEEE-
Q 035621          154 IFQLVDE---HTDD-KN-------PDDLML--------------------QKFVAHND--SVTAITCCIGSFNSIIISC-  199 (387)
Q Consensus       154 ~~~~~~~---~~~~-~~-------~~~~~~--------------------~~~~~~~~--~i~~~~~~~~~~~~~l~s~-  199 (387)
                      .......   .... .+       ....++                    .......+  .-..++++|..  .+++.. 
T Consensus       353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~--g~~yv~~  430 (582)
T 1flg_A          353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDT--GLFYVPA  430 (582)
T ss_dssp             TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTT--CCEEEEE
T ss_pred             CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCC--CEEEEec
Confidence            7432111   0000 00       000000                    00000000  00122333332  222221 


Q ss_pred             --------------------------------eCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEE
Q 035621          200 --------------------------------SMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY  247 (387)
Q Consensus       200 --------------------------------~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  247 (387)
                                                      ..+|.|..||+.+++.+.++....+...-.....+..++.++.||.++
T Consensus       431 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~  510 (582)
T 1flg_A          431 NHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFK  510 (582)
T ss_dssp             ECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEE
T ss_pred             hhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEE
Confidence                                            136889999999999998887554443323333577888899999999


Q ss_pred             EEeccccc
Q 035621          248 KGLLKYQS  255 (387)
Q Consensus       248 i~d~~~~~  255 (387)
                      .||.++++
T Consensus       511 A~D~~tG~  518 (582)
T 1flg_A          511 AFDAKSGK  518 (582)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCC
Confidence            99999854

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.97  E-value=1.6e-07  Score=74.70  Aligned_cols=177  Identities=16%  Similarity=0.144  Sum_probs=120.8

Q ss_pred             ccccCCCcEEEeeCCCC--cEEEEeCCCCceeEeccCCCCC-ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            2 LHHLPCNEVILTSSPEG--PITAYNPSSGAILAHFSGSRSP-RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      |.|++ +.++.+.+.+|  .|+.+|+++++.+.++.-.... -..+++..+..+..     .-.++.+.+||..+.+.+.
T Consensus        26 L~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~l-----tw~~~~v~v~D~~tl~~~~   99 (243)
T 3mbr_X           26 LFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQL-----TWRNHEGFVYDLATLTPRA   99 (243)
T ss_dssp             EEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEE-----ESSSSEEEEEETTTTEEEE
T ss_pred             EEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEE-----EeeCCEEEEEECCcCcEEE
Confidence            34665 56666666654  8999999999998887643332 23456666555544     4578999999999999999


Q ss_pred             ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCC--C---CCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621           79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH--D---KPVSCLKISPDGSLLISGGDDGVIATVP  153 (387)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd  153 (387)
                      ++..+..-.  .+.++++.|+.+..++.|.++|..+.+.+.++.-.  .   ..++.+.+. +|+..+..-.+..|.+.|
T Consensus       100 ti~~~~~Gw--glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vID  176 (243)
T 3mbr_X          100 RFRYPGEGW--ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARID  176 (243)
T ss_dssp             EEECSSCCC--EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEEC
T ss_pred             EEeCCCCce--EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEE
Confidence            888665433  44467777777777889999999999888777532  1   245666665 666555554677888888


Q ss_pred             CCcccccCCCCCCCCccceEeeec-------------cCCCeEEEEEeeCCCCceEEEEe
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVA-------------HNDSVTAITCCIGSFNSIIISCS  200 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~l~s~~  200 (387)
                      ..            ++..+..+..             ...-.+.|++.|.. +++++||-
T Consensus       177 p~------------tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~-~~lfVTGK  223 (243)
T 3mbr_X          177 PA------------SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH-DRLFVTGK  223 (243)
T ss_dssp             TT------------TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT-TEEEEEET
T ss_pred             CC------------CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCC-CEEEEECC
Confidence            83            3333333321             22456899999875 46666663

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.97  E-value=3e-06  Score=71.34  Aligned_cols=249  Identities=13%  Similarity=0.038  Sum_probs=140.0

Q ss_pred             CCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC-
Q 035621           27 SGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG-  105 (387)
Q Consensus        27 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-  105 (387)
                      +.+.+..+... .....++|++++.+...    ...++.|..||... +....+.....+..+++.++|+++++..... 
T Consensus        21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~----d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~   94 (306)
T 2p4o_A           21 PAKIITSFPVN-TFLENLASAPDGTIFVT----NHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADS   94 (306)
T ss_dssp             CEEEEEEECTT-CCEEEEEECTTSCEEEE----ETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTS
T ss_pred             CceEeEeCCCC-CCcceEEECCCCCEEEE----eCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCc
Confidence            34455555433 44678999886543332    34678899998754 3444444556788999999999666553322 


Q ss_pred             -cEEEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc-ccCCCCCCCCccceEeeeccCCCe
Q 035621          106 -NVYAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV-DEHTDDKNPDDLMLQKFVAHNDSV  182 (387)
Q Consensus       106 -~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i  182 (387)
                       .|..+|..+++...... ........++..+++..+++-..++.|..+|..... ......  ..... ......-...
T Consensus        95 ~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~--~~~~~-~~~~~~~~~p  171 (306)
T 2p4o_A           95 IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH--PMLAR-SNSESVFPAA  171 (306)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC--GGGSC-SSTTCCSCSE
T ss_pred             ceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEEC--Ccccc-ccccCCCCcC
Confidence             47777877777543322 122334556666655545554468888888873210 000000  00000 0000111233


Q ss_pred             EEEEEeeCCCCceEEEEeCCCcEEEEeCCC-CcE--EEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc
Q 035621          183 TAITCCIGSFNSIIISCSMDCTCKFWRLLN-GTH--LSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM  259 (387)
Q Consensus       183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  259 (387)
                      +.+  ++++ +.++++-...+.|..|++.. ++.  ...+........++++++|+++++....+.|.+++... ..   
T Consensus       172 ngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G-~~---  244 (306)
T 2p4o_A          172 NGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-ST---  244 (306)
T ss_dssp             EEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CE---
T ss_pred             CCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCC-CE---
Confidence            445  5664 34556666678999999874 321  12222224567789999998766666688999998642 11   


Q ss_pred             cccceeEeecccccccEEEEEEe---cCCCEEEEEeCCC
Q 035621          260 HKGQELVTLANRHDGVVVSVMMM---NEGKNLVSAAEDG  295 (387)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~~dg  295 (387)
                          ............+++++|.   |+++.|+.++..+
T Consensus       245 ----~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          245 ----TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             ----EEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             ----EEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence                0011111223568999998   8877776655443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.93  E-value=1.7e-05  Score=76.19  Aligned_cols=270  Identities=11%  Similarity=0.114  Sum_probs=163.7

Q ss_pred             CCCcEEEeeCCCCcEEEEeCCCCceeEeccC-------CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            6 PCNEVILTSSPEGPITAYNPSSGAILAHFSG-------SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      ++|.+.+ |+.++-+..||..+++.......       ....|.++...+++.+-.     |+.+ -+.+|+..++....
T Consensus       224 ~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-----gt~~-Gl~~~~~~~~~~~~  296 (795)
T 4a2l_A          224 SPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-----GTFN-DLNIYHEGTDSFAS  296 (795)
T ss_dssp             ETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-----EESS-CEEEEETTTTEEEE
T ss_pred             CCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-----EeCC-hhheEcCCCCeEEE
Confidence            4455444 44444588999877654432221       134588888887554432     2334 58888876654332


Q ss_pred             ccC--------CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc------CCCCCeEEEEEcCCCCEEEEEe
Q 035621           79 NIP--------VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS------AHDKPVSCLKISPDGSLLISGG  144 (387)
Q Consensus        79 ~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~  144 (387)
                      ...        ....|.++...++|. |-.|+.++-|..|+..+........      -....|.++...++++ |..|+
T Consensus       297 ~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt  374 (795)
T 4a2l_A          297 YSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGT  374 (795)
T ss_dssp             ECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEE
T ss_pred             EecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEE
Confidence            211        225689999998887 4456666679999876554322111      1235699999988876 55577


Q ss_pred             CCCcEEEEeCCcccccCCCCCCCCccceEeee---------ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE
Q 035621          145 DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV---------AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH  215 (387)
Q Consensus       145 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  215 (387)
                      .++-|..||...            . ....+.         .....|.++...++  +++|..|+.++-|..||..+++.
T Consensus       375 ~~~Gl~~~~~~~------------~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~--g~~lWigt~~~Gl~~~d~~~~~~  439 (795)
T 4a2l_A          375 NDGGLNLYNPIT------------Q-RFTSYTLQEDESARGIGSNNIKAVYVDEK--KSLVYIGTHAGGLSILHRNSGQV  439 (795)
T ss_dssp             SSSCEEEECTTT------------C-CEEEECCC------CCSCSCEEEEEEETT--TTEEEEEETTTEEEEEETTTCCE
T ss_pred             CCCCeEEEcCCC------------C-cEEEEecCCCCcccCCCCccEEEEEEcCC--CCEEEEEeCcCceeEEeCCCCcE
Confidence            777788888732            1 111111         12356777776544  35367777777799999887764


Q ss_pred             EEEEec------CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEE
Q 035621          216 LSTVTF------PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLV  289 (387)
Q Consensus       216 ~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  289 (387)
                      . .+..      ...|.++...++|...+.. . +-+.+|+..+............   ..-....|.++...++|.+.+
T Consensus       440 ~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~i~~d~~g~lWi  513 (795)
T 4a2l_A          440 E-NFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDG---TPVVSKQITTLFRDSHKRLWI  513 (795)
T ss_dssp             E-EECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTC---CBCCCCCEEEEEECTTCCEEE
T ss_pred             E-EeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccc---cccCCceEEEEEECCCCCEEE
Confidence            3 3332      3568899988887755544 4 4588888765322211100000   011246789999998888666


Q ss_pred             EEeCCCcEEEEECCCccE
Q 035621          290 SAAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       290 s~~~dg~i~iwd~~~~~~  307 (387)
                      .. . +-|..||..+++.
T Consensus       514 gt-~-~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          514 GG-E-EGLSVFKQEGLDI  529 (795)
T ss_dssp             EE-S-SCEEEEEEETTEE
T ss_pred             Ee-C-CceEEEeCCCCeE
Confidence            54 3 4588999887765

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.92  E-value=2.1e-06  Score=72.87  Aligned_cols=204  Identities=10%  Similarity=-0.019  Sum_probs=128.7

Q ss_pred             CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC--------------------CCCCeEEEEEcC-CCCEEEEE
Q 035621           85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA--------------------HDKPVSCLKISP-DGSLLISG  143 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------~~~~v~~~~~~~-~~~~l~~~  143 (387)
                      ...++++.+++++++++..++.|..|+..+++... +..                    ....+..+++.+ +++ |+++
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            45678899999878888888999999987655432 210                    013578999998 554 5555


Q ss_pred             eCCCcEEEEeCCcccccCCCCCCCCccceEeee-----ccCCCeEEEEEee-CCCCceEEEEeC----------------
Q 035621          144 GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-----AHNDSVTAITCCI-GSFNSIIISCSM----------------  201 (387)
Q Consensus       144 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~-~~~~~~l~s~~~----------------  201 (387)
                      ...+.|..+|...            . .+..+.     ........+++.+ ++  ++.++-..                
T Consensus        98 d~~~~i~~~d~~~------------g-~~~~~~~~~~~~~~~~p~~i~~d~~~G--~l~v~d~~~~~~~~~~~~~~~~~~  162 (322)
T 2fp8_A           98 DCYYHLSVVGSEG------------G-HATQLATSVDGVPFKWLYAVTVDQRTG--IVYFTDVSTLYDDRGVQQIMDTSD  162 (322)
T ss_dssp             ETTTEEEEECTTC------------E-ECEEEESEETTEECSCEEEEEECTTTC--CEEEEESCSSCCTTCHHHHHHHTC
T ss_pred             ECCCCEEEEeCCC------------C-EEEEecccCCCCcccccceEEEecCCC--EEEEECCcccccccccceehcccC
Confidence            5555578887621            1 111111     0113456788877 53  66665432                


Q ss_pred             -CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEE-ccCCcEEEEeccccccccccccceeEeecccccccEEEE
Q 035621          202 -DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA-GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV  279 (387)
Q Consensus       202 -d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  279 (387)
                       ++.|..||..+++.......-.....++++|+++.|+++ ...+.|++|++......    .......   ..+ ...+
T Consensus       163 ~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~----~~~~~~~---~~g-P~gi  234 (322)
T 2fp8_A          163 KTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG----TAEVLVK---IPN-PGNI  234 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT----CEEEEEE---CSS-EEEE
T ss_pred             CCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC----ccceEEe---CCC-CCCe
Confidence             367888998777644333333456789999999977666 55789999998752110    0111111   123 7889


Q ss_pred             EEecCCCEEEEEeC----------CCcEEEEECCCccEEEEeecc
Q 035621          280 MMMNEGKNLVSAAE----------DGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       280 ~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      +++++|++.++...          .+.|..+|. .++.+..+...
T Consensus       235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~  278 (322)
T 2fp8_A          235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLP  278 (322)
T ss_dssp             EECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECC
T ss_pred             EECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECC
Confidence            99999987776544          467888886 47777777644

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.92  E-value=1.6e-05  Score=69.52  Aligned_cols=241  Identities=14%  Similarity=0.014  Sum_probs=149.9

Q ss_pred             CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCCC----ceeEEccCCCCCeEEEEEcCC-
Q 035621           63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGG-LSGNVYAISVPKG----DILRSFSAHDKPVSCLKISPD-  136 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~-  136 (387)
                      ...|+..++........+.....+..++|++.+..|+... ..+.|+.+++...    .....+.........+++.+. 
T Consensus        91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~  170 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  170 (400)
T ss_dssp             TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTT
T ss_pred             cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecC
Confidence            4678888887666555555567789999998766666554 5678999988652    233333334456789999984 


Q ss_pred             CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CCcEEEEeCCCCcE
Q 035621          137 GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DCTCKFWRLLNGTH  215 (387)
Q Consensus       137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~  215 (387)
                      +++.++-...+.|.+.++.            .......+.........|++.|.. +.++++-.. .+.|...++.....
T Consensus       171 ~~lY~~d~~~~~I~~~~~~------------g~~~~~l~~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~~~~~dG~~~  237 (400)
T 3p5b_L          171 SNIYWTDSVLGTVSVADTK------------GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDI  237 (400)
T ss_dssp             TEEEEEETTTTEEEEECTT------------TCSEEEEEECSSCCEEEEEEETTT-TEEEEEECSSSCCEEEEETTSCSC
T ss_pred             CceEEEECCCCeEEEEeCC------------CCceEEEEeCCCCCcceEEEeccc-CeEEEEeCCCCCEEEEEeCCCCcc
Confidence            4445555567888888872            222222222334457889998864 344444423 47888888865443


Q ss_pred             EEEEec-CCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC
Q 035621          216 LSTVTF-PCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE  293 (387)
Q Consensus       216 ~~~~~~-~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  293 (387)
                      ...+.. -.....+++++++..|+.+. ..+.|..+|+....+.      .+.. ....-.....+++. .+.++++-..
T Consensus       238 ~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~------~~~~-~~~~l~~P~gl~v~-~~~lywtd~~  309 (400)
T 3p5b_L          238 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK------TILE-DEKRLAHPFSLAVF-EDKVFWTDII  309 (400)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE------EEEE-CSSTTSSEEEEEEE-TTEEEEEESS
T ss_pred             EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE------EEEe-CCCCCCCCEEEEEe-CCEEEEecCC
Confidence            333332 25688999999887777764 4678999988652211      1111 11122345677774 3456666667


Q ss_pred             CCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621          294 DGSVYIWEIEKRQVVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       294 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  325 (387)
                      .+.|..+|..+|+.+..+..... .+.++.+.
T Consensus       310 ~~~V~~~~~~~G~~~~~i~~~~~-~p~~i~v~  340 (400)
T 3p5b_L          310 NEAIFSANRLTGSDVNLLAENLL-SPEDMVLF  340 (400)
T ss_dssp             SCSEEEEESSSCCCCEEEECSCS-CEEEEEEE
T ss_pred             CCeEEEEEcCCCCceEEEecCCC-CCceEEEE
Confidence            78899999888888777764433 45566544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.92  E-value=3.6e-07  Score=85.67  Aligned_cols=266  Identities=12%  Similarity=0.040  Sum_probs=145.5

Q ss_pred             cccC-CCcEEEeeCCCC-----------cEEEEeCCCCcee--EeccC-CCCCceeEEEcCccceeeeccccCC-CCCeE
Q 035621            3 HHLP-CNEVILTSSPEG-----------PITAYNPSSGAIL--AHFSG-SRSPRRGLTFAGKPFIAASHISPTT-GSGSV   66 (387)
Q Consensus         3 ~~s~-~~~~l~~~~~dg-----------~i~iwd~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~-~d~~v   66 (387)
                      ++.| ++++++.|+.++           .+.+||+.+++..  ..+.. +.....++++..++.+...    |+ .+..+
T Consensus       192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~----GG~~~~~v  267 (656)
T 1k3i_A          192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVT----GGNDAKKT  267 (656)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEE----CSSSTTCE
T ss_pred             EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEe----CCCCCCce
Confidence            3456 888888886543           5889999877542  22221 2222334566554333222    44 45689


Q ss_pred             EEEEccCCCcccc--cCCCCCeeeEEeccCCCEEEEec-CC-----CcEEEEeCCCCceeEEc-----cCCCCCeEEEEE
Q 035621           67 HLYNLWSSTPLHN--IPVPEPVAPLATTADGSYLFTGG-LS-----GNVYAISVPKGDILRSF-----SAHDKPVSCLKI  133 (387)
Q Consensus        67 ~vw~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~  133 (387)
                      .+||..+++....  +.....-.+++..++++.++.|+ .+     ..+.+||..+.+-...-     ...... ....+
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~  346 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLY  346 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TTGGG
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-cccee
Confidence            9999987643332  22222334556667999999998 34     46999999876543320     000000 00122


Q ss_pred             cCCCCEEEEEeCCC---------cEEEEeCCcccccCCCCCCCCccceEeeeccC---------CCeEEEEEeeCCCCce
Q 035621          134 SPDGSLLISGGDDG---------VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHN---------DSVTAITCCIGSFNSI  195 (387)
Q Consensus       134 ~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~~  195 (387)
                      ..++..++.++.+|         .+..||...            ..-......+.         ..-.++.+.. .++.+
T Consensus       347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~------------~~w~~~~~~~~~~~~~~~~~~~~~av~~~~-~~~~i  413 (656)
T 1k3i_A          347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG------------SGDVKSAGKRQSNRGVAPDAMCGNAVMYDA-VKGKI  413 (656)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECST------------TCEEEEEEECEETTEECCCCBTCEEEEEET-TTTEE
T ss_pred             ecCCceEEEECCCCcEEEecCccceeeeecCC------------cceeecCCccccccccCCCCCCCceEeccC-CCCeE
Confidence            34555556665554         456666622            11111111111         1122333322 23578


Q ss_pred             EEEEeCCC-----------cEEEEeCCCCcEEEEE--e--cCCceeEEEeCCCCCeEEEEccC-----------CcEEEE
Q 035621          196 IISCSMDC-----------TCKFWRLLNGTHLSTV--T--FPCAIMGLALDPTETDFFAAGSD-----------GLIYKG  249 (387)
Q Consensus       196 l~s~~~d~-----------~i~iwd~~~~~~~~~~--~--~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~i~  249 (387)
                      ++.|+.++           .+.+||..+.+-....  .  .+..-.+++..|+++.++.|+.+           ..+.+|
T Consensus       414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~y  493 (656)
T 1k3i_A          414 LTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIY  493 (656)
T ss_dssp             EEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred             EEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEE
Confidence            88887543           6888888876644332  2  22334556777899999998864           468899


Q ss_pred             eccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC
Q 035621          250 LLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE  293 (387)
Q Consensus       250 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  293 (387)
                      |..+........       ............+.|+++.++.|+.
T Consensus       494 dp~t~~W~~~~~-------~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          494 VPEQDTFYKQNP-------NSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EGGGTEEEECCC-------CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCCCCceeecCC-------CCCccccccHhhcCCCcEEEecCCC
Confidence            987643222111       0111122234456789999999985

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.86  E-value=3.9e-06  Score=71.25  Aligned_cols=234  Identities=10%  Similarity=0.023  Sum_probs=132.9

Q ss_pred             CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-C-------------------CCCCeeeEEecc-CCCEE
Q 035621           40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI-P-------------------VPEPVAPLATTA-DGSYL   98 (387)
Q Consensus        40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~-~-------------------~~~~v~~~~~~~-~~~~l   98 (387)
                      ...++++.+++.+    +.++..++.|..|+..+++..... .                   ....+..+++.+ +++ |
T Consensus        20 ~p~~i~~d~~g~~----l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l   94 (322)
T 2fp8_A           20 APNSFTFDSTNKG----FYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-L   94 (322)
T ss_dssp             CCCCEECCTTCSS----EEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-E
T ss_pred             CceEEEEcCCCCE----EEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-E
Confidence            3567888875432    222556788988987654332110 0                   013478899998 554 5


Q ss_pred             EEecCCCcEEEEeCCCCceeEEccC-----CCCCeEEEEEcC-CCCEEEEEeC-----------------CCcEEEEeCC
Q 035621           99 FTGGLSGNVYAISVPKGDILRSFSA-----HDKPVSCLKISP-DGSLLISGGD-----------------DGVIATVPIF  155 (387)
Q Consensus        99 ~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~iwd~~  155 (387)
                      +++...+.|..+|..+++. ..+..     .......+++.+ +|++.++-..                 ++.|..||..
T Consensus        95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence            5554445588898765542 22211     123478899999 8886665432                 3567777762


Q ss_pred             cccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE-EEEeCCCcEEEEeCCCCc--EEEEE-ecCCceeEEEeC
Q 035621          156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII-ISCSMDCTCKFWRLLNGT--HLSTV-TFPCAIMGLALD  231 (387)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~--~~~~~-~~~~~v~~~~~~  231 (387)
                                  ... ...+.........+++++++  +.| ++-+..+.|..|++....  ....+ ..+. ...+++.
T Consensus       174 ------------~~~-~~~~~~~~~~p~gia~~~dg--~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d  237 (322)
T 2fp8_A          174 ------------TKE-TTLLLKELHVPGGAEVSADS--SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN  237 (322)
T ss_dssp             ------------TTE-EEEEEEEESCCCEEEECTTS--SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEEC
T ss_pred             ------------CCE-EEEeccCCccCcceEECCCC--CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEEC
Confidence                        111 12221122334568888774  544 444567899999987521  12222 2334 7889999


Q ss_pred             CCCCeEEEEcc----------CCcEEEEeccccccccccccceeEeecccc---cccEEEEEEecCCCEEEEEeCCCcEE
Q 035621          232 PTETDFFAAGS----------DGLIYKGLLKYQSRQQMHKGQELVTLANRH---DGVVVSVMMMNEGKNLVSAAEDGSVY  298 (387)
Q Consensus       232 ~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~i~  298 (387)
                      ++|+++++...          .+.|..+|...         .....+....   ...++.+++ .+++++++....+.|.
T Consensus       238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G---------~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~  307 (322)
T 2fp8_A          238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG---------NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVG  307 (322)
T ss_dssp             TTSCEEEEEEEETTSSTTSCEEEEEEEECTTS---------CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEE
T ss_pred             CCCCEEEEecCcccccccCCCccEEEEECCCC---------CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceE
Confidence            99986666544          45677776542         1111111111   234566666 4666666666778899


Q ss_pred             EEECCCc
Q 035621          299 IWEIEKR  305 (387)
Q Consensus       299 iwd~~~~  305 (387)
                      .+++...
T Consensus       308 ~~~~~~~  314 (322)
T 2fp8_A          308 ILVYDKK  314 (322)
T ss_dssp             EEEC---
T ss_pred             EEecccc
Confidence            9987643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.83  E-value=1.3e-05  Score=67.45  Aligned_cols=235  Identities=14%  Similarity=0.119  Sum_probs=135.4

Q ss_pred             ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEeCCc
Q 035621           79 NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG--VIATVPIFQ  156 (387)
Q Consensus        79 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~  156 (387)
                      .+........++|+++++++++-..++.|..||... +....+. ....+..+++.++++++++.....  .|..+|.. 
T Consensus        27 ~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~-  103 (306)
T 2p4o_A           27 SFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS-  103 (306)
T ss_dssp             EECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT-
T ss_pred             eCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCC-
Confidence            343345677899999998777766788999999765 4333333 235688999999999665554332  35556641 


Q ss_pred             ccccCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-EEEEe----------cCCc
Q 035621          157 LVDEHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-LSTVT----------FPCA  224 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~----------~~~~  224 (387)
                                 ......... ........++..+.  +..+++-..++.|..+|..+++. +....          .-..
T Consensus       104 -----------~g~~~~~~~~~~~~~~~g~~~~~~--~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A          104 -----------DGTVETLLTLPDAIFLNGITPLSD--TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             -----------TSCEEEEEECTTCSCEEEEEESSS--SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             -----------CCeEEEEEeCCCccccCcccccCC--CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence                       222111111 11122234443332  34455554688999999876532 21111          0123


Q ss_pred             eeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          225 IMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       225 v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      .+.+  +|+++.|+++. ..+.|+.+++......  . ......    .......++++++|+++++....+.|.+++..
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~--~-~~~~~~----~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP--G-EPEIFV----EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB--C-CCEEEE----ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC--C-ccEEEe----ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            4455  78887776664 4789999998752110  0 011111    11345678999999988877778899999975


Q ss_pred             CccEEE--EeecccCCCceeEEEEecCCCceeeEEEecC
Q 035621          304 KRQVVM--VLKNELAGSISEMVIATGIGGSRGCGVVKTG  340 (387)
Q Consensus       304 ~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  340 (387)
                       ++...  .+... ...+++++|....++...+++...+
T Consensus       242 -G~~~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          242 -RSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             -CCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             -CCEEEEeecccc-cCCceEEEEecccCCCCEEEEECCC
Confidence             66533  23322 1357888886322344445555443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.75  E-value=5.3e-06  Score=69.51  Aligned_cols=202  Identities=17%  Similarity=0.242  Sum_probs=130.2

Q ss_pred             CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCC----CC---EEEEEeC---CCcEEEEeCCcccccCCC
Q 035621           94 DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPD----GS---LLISGGD---DGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        94 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~iwd~~~~~~~~~~  163 (387)
                      ...+++.....+-+.+||+ +|+.+..+..  +.++.+..-|+    ++   ++++...   +++|.+|++..       
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp-------  108 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG-------  108 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT-------
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC-------
Confidence            3445555556778999999 8888888863  56777776653    22   2333333   57899997721       


Q ss_pred             CCCCCccceEeeec------cC-CCeEEEEE--eeCCCCceEEEEeCCCcEEEEeCC-------CCcEEEEEecCCceeE
Q 035621          164 DKNPDDLMLQKFVA------HN-DSVTAITC--CIGSFNSIIISCSMDCTCKFWRLL-------NGTHLSTVTFPCAIMG  227 (387)
Q Consensus       164 ~~~~~~~~~~~~~~------~~-~~i~~~~~--~~~~~~~~l~s~~~d~~i~iwd~~-------~~~~~~~~~~~~~v~~  227 (387)
                          ....+..+..      .. ..+..+++  ++.....+++....+|.+..|++.       +.+.+++|.....+..
T Consensus       109 ----~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Eg  184 (355)
T 3amr_A          109 ----KNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEG  184 (355)
T ss_dssp             ----TTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEE
T ss_pred             ----CCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcce
Confidence                1112222211      11 45566777  443322368888889999999983       3467788888899999


Q ss_pred             EEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccc-cccEEEEEE--ecCCC-EEEEEe-CCCcEEEEEC
Q 035621          228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH-DGVVVSVMM--MNEGK-NLVSAA-EDGSVYIWEI  302 (387)
Q Consensus       228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--s~~~~-~l~s~~-~dg~i~iwd~  302 (387)
                      +...+....|+++-.+..|..++.......   ....+.....++ ...+..|++  .++++ +|++++ .+.+..+||.
T Consensus       185 cvvDd~~g~Lyv~eEd~GIw~~da~p~~~~---~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          185 MAADDEYGRLYIAEEDEAIWKFSAEPDGGS---NGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             EEEETTTTEEEEEETTTEEEEEECSTTSCS---CCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             EEEcCCCCeEEEecccceEEEEeCCcCCCC---CceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence            999999999999999866666665432210   011222211122 236888887  45555 666555 6779999999


Q ss_pred             C-CccEEEEee
Q 035621          303 E-KRQVVMVLK  312 (387)
Q Consensus       303 ~-~~~~~~~~~  312 (387)
                      . +.+.+..|.
T Consensus       262 ~~~~~~vg~f~  272 (355)
T 3amr_A          262 QGKNKYVADFR  272 (355)
T ss_dssp             STTCCEEEEEE
T ss_pred             CCCCcEEEEEE
Confidence            7 788888885

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=1.4e-05  Score=70.61  Aligned_cols=239  Identities=10%  Similarity=0.015  Sum_probs=130.7

Q ss_pred             ccccC-CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccc-eeeeccccCCCCCeEEEEEccCCCcc--
Q 035621            2 LHHLP-CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPF-IAASHISPTTGSGSVHLYNLWSSTPL--   77 (387)
Q Consensus         2 l~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~d~~v~vw~~~~~~~~--   77 (387)
                      |+++| ++..|..+...+.|+.+|+.++....... .......+++++++. +...-...+.....+...+. .+...  
T Consensus       142 lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~  219 (430)
T 3tc9_A          142 LSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVI  219 (430)
T ss_dssp             EEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSE
T ss_pred             EEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeee
Confidence            46787 34445554444889999987666544333 445578899998654 22211000011123433443 33222  


Q ss_pred             cccCCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEeC
Q 035621           78 HNIPVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISG-GDDGVIATVPI  154 (387)
Q Consensus        78 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~  154 (387)
                      ..+........++++| ++.++++-..++.|..++...+....... ........++|+|++++|+.+ ...+.|..++.
T Consensus       220 ~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~  299 (430)
T 3tc9_A          220 TELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDY  299 (430)
T ss_dssp             EEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             eeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeC
Confidence            2222234567889999 67666666677899999987665422222 122457899999999955544 56778888876


Q ss_pred             CcccccCCCCCCCCccceEeeec----------------cCCCeEEEEEee------CCCCceEEEEeCCCcEEEEeCCC
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVA----------------HNDSVTAITCCI------GSFNSIIISCSMDCTCKFWRLLN  212 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~~~~~~~------~~~~~~l~s~~~d~~i~iwd~~~  212 (387)
                      ......        ......+.+                ...+-..++..+      +.++.++++-...+.|+.++ .+
T Consensus       300 d~~~~~--------~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~  370 (430)
T 3tc9_A          300 DWKTKR--------LTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQ  370 (430)
T ss_dssp             ETTTTE--------ECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TT
T ss_pred             Cccccc--------ccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CC
Confidence            311000        000001110                111111344432      23346666666678888888 45


Q ss_pred             CcEEEEEec---------C---------CceeEEEeCCC-CCeEEEEccCCcEEEEec
Q 035621          213 GTHLSTVTF---------P---------CAIMGLALDPT-ETDFFAAGSDGLIYKGLL  251 (387)
Q Consensus       213 ~~~~~~~~~---------~---------~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~  251 (387)
                      +........         .         .....++++|+ +.++++-..+..|+.+++
T Consensus       371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            644333322         1         14788999985 444444455677777665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.73  E-value=2.6e-06  Score=80.99  Aligned_cols=235  Identities=15%  Similarity=0.066  Sum_probs=125.1

Q ss_pred             cccc-CCCcEEEeeCC-----CCcEEEEeCCCC-ceeEe-ccCCCCCceeEEEcCcccee-eeccccCCCCCeEEEEEcc
Q 035621            2 LHHL-PCNEVILTSSP-----EGPITAYNPSSG-AILAH-FSGSRSPRRGLTFAGKPFIA-ASHISPTTGSGSVHLYNLW   72 (387)
Q Consensus         2 l~~s-~~~~~l~~~~~-----dg~i~iwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~d~~v~vw~~~   72 (387)
                      .+|| |||++||.+..     ...|+++|+.++ +.+.. +.   .....++|+|++..+ ....-.......|.++++.
T Consensus       179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg  255 (751)
T 2xe4_A          179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG  255 (751)
T ss_dssp             EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred             eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence            3689 99998885432     235999999988 63221 11   124578899975322 2211001111368888887


Q ss_pred             CCCcc--ccc--CCCCCeeeEEeccCCCEEEEecC---CCcEEEEeCCCC--ce-eEEc-cCCCCCeEEEEEcCCCCEEE
Q 035621           73 SSTPL--HNI--PVPEPVAPLATTADGSYLFTGGL---SGNVYAISVPKG--DI-LRSF-SAHDKPVSCLKISPDGSLLI  141 (387)
Q Consensus        73 ~~~~~--~~~--~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~--~~-~~~~-~~~~~~v~~~~~~~~~~~l~  141 (387)
                      ++...  ..+  ........+.|+|||++|+....   ...|.++|+.++  +. +..+ ........++.|+..+.+++
T Consensus       256 t~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~  335 (751)
T 2xe4_A          256 KLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVI  335 (751)
T ss_dssp             SCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEE
T ss_pred             CCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEE
Confidence            66422  222  22234567899999999887653   347888998775  23 1333 33445556666554444445


Q ss_pred             EEeCC--C--cEEEEeCCcccccCCCCCCCCccceEe-eeccCC--CeEEEEEeeCCCCceEEEEeCCCc--EEEEeC--
Q 035621          142 SGGDD--G--VIATVPIFQLVDEHTDDKNPDDLMLQK-FVAHND--SVTAITCCIGSFNSIIISCSMDCT--CKFWRL--  210 (387)
Q Consensus       142 ~~~~d--g--~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~~~l~s~~~d~~--i~iwd~--  210 (387)
                      ....+  +  .|..+|+..            ...... +..+..  .+..+.  +.+ +.++++...++.  |.++|+  
T Consensus       336 ~t~~~~a~~~~L~~~d~~~------------~~~~~~~li~~~~~~~l~~~~--~~~-~~lv~~~~~~g~~~l~~~dl~~  400 (751)
T 2xe4_A          336 LTNEGGAVNHKLLIAPRGQ------------PSDWSHVLVDHSEDVFMESIA--VRS-NYLVVAGRRAGLTRIWTMMADS  400 (751)
T ss_dssp             EECTTTCTTCEEEEEETTS------------TTCCCCEEECCCSSEEEEEEE--ECS-SEEEEEEEETTEEEEEEEECCT
T ss_pred             EeCCCCCCCcEEEEEcCCC------------cccceeeEECCCCCcEEEEEE--EEC-CEEEEEEEeCCEEEEEEEeccc
Confidence            54443  2  455566521            011122 223333  233444  343 466777777775  555665  


Q ss_pred             -----CCCcEEEEEecCCc--eeEEEe----CCCCCeEE-EEcc---CCcEEEEecccc
Q 035621          211 -----LNGTHLSTVTFPCA--IMGLAL----DPTETDFF-AAGS---DGLIYKGLLKYQ  254 (387)
Q Consensus       211 -----~~~~~~~~~~~~~~--v~~~~~----~~~~~~l~-~~~~---dg~i~i~d~~~~  254 (387)
                           ..++....+..+..  +..+.+    ++++..++ +.+.   -..++.+|+.++
T Consensus       401 ~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~  459 (751)
T 2xe4_A          401 QDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH  459 (751)
T ss_dssp             TTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred             ccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence                 33331445544433  334433    44665443 3333   246777777653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.71  E-value=4.9e-05  Score=64.10  Aligned_cols=238  Identities=11%  Similarity=-0.014  Sum_probs=142.5

Q ss_pred             CCeEEEEEccCCCcc--cccCCCCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCCce-eEEccCCCCCeEEEEEcCCCC
Q 035621           63 SGSVHLYNLWSSTPL--HNIPVPEPVAPLATTADGSYLFTG-GLSGNVYAISVPKGDI-LRSFSAHDKPVSCLKISPDGS  138 (387)
Q Consensus        63 d~~v~vw~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~  138 (387)
                      ...|+..++......  ..+.....+..++|.+.+..|+.. ...+.|..+++..+.. ...+.........+++.+.+.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            567888888765311  112222456788999865555544 4567899999876532 122222234567899987544


Q ss_pred             -EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCCcEEEEeCCCCcEE
Q 035621          139 -LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDCTCKFWRLLNGTHL  216 (387)
Q Consensus       139 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~  216 (387)
                       ++++-...+.|.++++.            .................+++.|.. +.++.+-. ..+.|...++......
T Consensus        92 ~ly~~d~~~~~I~~~~~d------------G~~~~~l~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~~~dG~~~~  158 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLD------------GSLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRF  158 (318)
T ss_dssp             EEEEEETTTTEEEEEETT------------SCSCEEEECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             eEEEEECCCCEEEEEECC------------CCcEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEEEcCCCCeE
Confidence             44555567789998872            111111122334456789998864 34444432 3578888887643322


Q ss_pred             EEEe-cCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC
Q 035621          217 STVT-FPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED  294 (387)
Q Consensus       217 ~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  294 (387)
                      ..+. .-...+.++++|++..|+.+. ..+.|..+++....+.         .+..........+++.. +.++.+-...
T Consensus       159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---------~~~~~~~~~P~glav~~-~~lywtd~~~  228 (318)
T 3sov_A          159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ---------AVVKGSLPHPFALTLFE-DILYWTDWST  228 (318)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------EEECSCCSCEEEEEEET-TEEEEEETTT
T ss_pred             EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE---------EEecCCCCCceEEEEeC-CEEEEEecCC
Confidence            2222 224578999999777766664 4788999988642211         11112334567788763 4555666677


Q ss_pred             CcEEEEECCCccEEEEeecccCCCceeEEE
Q 035621          295 GSVYIWEIEKRQVVMVLKNELAGSISEMVI  324 (387)
Q Consensus       295 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  324 (387)
                      +.|..++..+|+.+..+..... .+.++.+
T Consensus       229 ~~V~~~~~~~G~~~~~i~~~~~-~P~~i~v  257 (318)
T 3sov_A          229 HSILACNKYTGEGLREIHSDIF-SPMDIHA  257 (318)
T ss_dssp             TEEEEEETTTCCSCEEEECCCS-SCCCEEE
T ss_pred             CeEEEEECCCCCceEEEeCCCC-CCcEEEE
Confidence            8999999988887777664432 4555544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.71  E-value=8.9e-06  Score=65.65  Aligned_cols=202  Identities=12%  Similarity=0.167  Sum_probs=134.6

Q ss_pred             eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC--CCeeeEEeccCCCEEEEecCCCcEEEE
Q 035621           33 HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP--EPVAPLATTADGSYLFTGGLSGNVYAI  110 (387)
Q Consensus        33 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~  110 (387)
                      .+.+-...+..++++|+..   ..+++...++.|...|.. ++.++.+...  .....+++.+++.++++.-.++.+.++
T Consensus        21 ~l~g~~~~lSGla~~~~~~---~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSN---TLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVI   96 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTT---EEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEE
T ss_pred             ECCCcccCcceeEEeCCCC---EEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEE
Confidence            4556666799999998432   111224568889999987 8777776543  568889999988877776667889999


Q ss_pred             eCCCCce---eEEcc------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee------
Q 035621          111 SVPKGDI---LRSFS------AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF------  175 (387)
Q Consensus       111 d~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------  175 (387)
                      ++.....   +....      ..+...-.++|+|.++.|+++.+.....+|.+....         ....+...      
T Consensus        97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~---------~~~~l~i~~~~~~~  167 (255)
T 3qqz_A           97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLL---------SSNELHISKDKALQ  167 (255)
T ss_dssp             EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTT---------CSSCCEEEECHHHH
T ss_pred             EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccc---------cCCceeeecchhhc
Confidence            8765432   12221      234567899999999888887776666666653110         00011111      


Q ss_pred             -eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC----------CceeEEEeCCCCCeEEEEccCC
Q 035621          176 -VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP----------CAIMGLALDPTETDFFAAGSDG  244 (387)
Q Consensus       176 -~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~dg  244 (387)
                       ..+...+.++++.|.. +.+++....++.|.++|.. ++.+..+...          .....++|.++|+ |++.+..+
T Consensus       168 ~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n  244 (255)
T 3qqz_A          168 RQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPN  244 (255)
T ss_dssp             HTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTT
T ss_pred             cccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCc
Confidence             1123457889999875 6788888888999999965 6666666633          2678999999997 44556666


Q ss_pred             cEEEEe
Q 035621          245 LIYKGL  250 (387)
Q Consensus       245 ~i~i~d  250 (387)
                      .++.+.
T Consensus       245 ~~y~f~  250 (255)
T 3qqz_A          245 RFYRFT  250 (255)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            666664

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=0.00034  Score=67.01  Aligned_cols=274  Identities=11%  Similarity=0.035  Sum_probs=156.1

Q ss_pred             CCCcEEEeeCCCCcEEEEeCCCCceeEeccC-------CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            6 PCNEVILTSSPEGPITAYNPSSGAILAHFSG-------SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      ++|++.+ |+.+ -+.+||..+++.......       ....|.++...+++.+-.     ++..+-|.+++..++....
T Consensus       220 ~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-----gt~~~Gl~~~~~~~~~~~~  292 (781)
T 3v9f_A          220 TNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-----ATELNGIMILDLQQNQFLL  292 (781)
T ss_dssp             TTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-----EESSSCEEEEETTCC----
T ss_pred             CCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-----EeCCCCeEEECCCCCeeee
Confidence            4455444 4444 588899876654322111       234588888877554432     3444568888886654322


Q ss_pred             ccC---------------CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc---------CCCCCeEEEEEc
Q 035621           79 NIP---------------VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS---------AHDKPVSCLKIS  134 (387)
Q Consensus        79 ~~~---------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~v~~~~~~  134 (387)
                      ...               ....|.++...++|. |-.|+.++-|..++..+........         .....|.++...
T Consensus       293 ~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d  371 (781)
T 3v9f_A          293 PEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDD  371 (781)
T ss_dssp             -----CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEEC
T ss_pred             eeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEc
Confidence            111               234688888888886 5556666669999987654332211         123568999998


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc
Q 035621          135 PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT  214 (387)
Q Consensus       135 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  214 (387)
                      +++. |..|+.++-|..||.....-...         ..........|.++...++  +. |..|+.++-|..+|..+++
T Consensus       372 ~~g~-lWigt~~~Gl~~~~~~~~~~~~~---------~~~~~~~~~~v~~i~~d~~--g~-lWigt~~~Gl~~~~~~~~~  438 (781)
T 3v9f_A          372 GQGK-LWIGTDGGGINVFENGKRVAIYN---------KENRELLSNSVLCSLKDSE--GN-LWFGTYLGNISYYNTRLKK  438 (781)
T ss_dssp             TTSC-EEEEEBSSCEEEEETTEEEEECC--------------CCCSBEEEEEECTT--SC-EEEEETTEEEEEECSSSCE
T ss_pred             CCCC-EEEEeCCCcEEEEECCCCeEEEc---------cCCCCCCCcceEEEEECCC--CC-EEEEeccCCEEEEcCCCCc
Confidence            8776 55666666788888732100000         0000123356777765443  34 5556766779999987765


Q ss_pred             EEEEEe----cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEE
Q 035621          215 HLSTVT----FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVS  290 (387)
Q Consensus       215 ~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  290 (387)
                      . ..+.    ....|.++...+++...+ |+. +-+..++..+...........    .......|.++...++|.+.+.
T Consensus       439 ~-~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~----~~~~~~~i~~i~~d~~g~lWig  511 (781)
T 3v9f_A          439 F-QIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSN----SQLLENFVRSIAQDSEGRFWIG  511 (781)
T ss_dssp             E-EECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTT----SSCSCSCEEEEEECTTCCEEEE
T ss_pred             E-EEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcc----cccccceeEEEEEcCCCCEEEE
Confidence            3 3333    235788998888876444 444 568888876533211110000    0011467899999988875554


Q ss_pred             EeCCCcEEEEECCCccEE
Q 035621          291 AAEDGSVYIWEIEKRQVV  308 (387)
Q Consensus       291 ~~~dg~i~iwd~~~~~~~  308 (387)
                       +.++-|..||..+++..
T Consensus       512 -t~~~Gl~~~~~~~~~~~  528 (781)
T 3v9f_A          512 -TFGGGVGIYTPDMQLVR  528 (781)
T ss_dssp             -ESSSCEEEECTTCCEEE
T ss_pred             -EcCCCEEEEeCCCCeEE
Confidence             44444888998776543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.65  E-value=0.00021  Score=67.75  Aligned_cols=239  Identities=13%  Similarity=0.008  Sum_probs=142.5

Q ss_pred             CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCC----ceeEEccCCCCCeEEEEEcCCC
Q 035621           63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTG-GLSGNVYAISVPKG----DILRSFSAHDKPVSCLKISPDG  137 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~  137 (387)
                      ...|+..++........+.....+..++|.+.+..|+.. ...+.|+.+++...    .....+.........|++.+.+
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~  482 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  482 (791)
T ss_dssp             BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence            455677777655554445555678899999865555544 45678888888653    2233333344567889999877


Q ss_pred             CEEE-EEeCCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCC-CcEEEEeCCCCc
Q 035621          138 SLLI-SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMD-CTCKFWRLLNGT  214 (387)
Q Consensus       138 ~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~  214 (387)
                      ..|+ +-...+.|.+.++.             +.....+ .........|++.|.. +.++++-... +.|...++....
T Consensus       483 ~~LY~tD~~~~~I~v~~ld-------------G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~  548 (791)
T 3m0c_C          483 SNIYWTDSVLGTVSVADTK-------------GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVD  548 (791)
T ss_dssp             TEEEEEETTTTEEEEEETT-------------SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCC
T ss_pred             CcEEEEecCCCeEEEEeCC-------------CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCc
Confidence            5554 44567889998882             2222222 2334457889998864 3444444333 788888886544


Q ss_pred             EEEEEec-CCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621          215 HLSTVTF-PCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA  292 (387)
Q Consensus       215 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  292 (387)
                      ....+.. -.....|++++.+..|+.+. ..+.|..+++....+..      +... ...-....+|++.. +.++++-.
T Consensus       549 ~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~------v~~~-~~~l~~P~glav~~-~~lYwtD~  620 (791)
T 3m0c_C          549 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------ILED-EKRLAHPFSLAVFE-DKVFWTDI  620 (791)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE------EEEC-TTTTSSEEEEEEET-TEEEEEET
T ss_pred             eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE------EecC-CCccCCCCEEEEeC-CEEEEEEC
Confidence            4333332 25788999998877777764 46778888876532211      1110 01123455677643 34555555


Q ss_pred             CCCcEEEEECCCccEEEEeecccCCCceeEEE
Q 035621          293 EDGSVYIWEIEKRQVVMVLKNELAGSISEMVI  324 (387)
Q Consensus       293 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  324 (387)
                      ..+.|...+..+|+.+..+..... .+.+|.+
T Consensus       621 ~~~~I~~~dk~tG~~~~~l~~~l~-~P~~i~v  651 (791)
T 3m0c_C          621 INEAIFSANRLTGSDVNLLAENLL-SPEDMVL  651 (791)
T ss_dssp             TTTEEEEEETTTCCCCEEEECSCS-CCCCEEE
T ss_pred             CCCEEEEEeCCCCcceEEeecCCC-CceeEee
Confidence            678898898888877666654332 3444433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.64  E-value=7.8e-05  Score=71.45  Aligned_cols=269  Identities=12%  Similarity=0.024  Sum_probs=155.3

Q ss_pred             CCCcEEEeeCCCCcEEEEeCCCCceeEecc--------------CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc
Q 035621            6 PCNEVILTSSPEGPITAYNPSSGAILAHFS--------------GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL   71 (387)
Q Consensus         6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~   71 (387)
                      ++|. |..|+..+-|.++|..++.......              .....|.++...+++.+-.     |+.++-|..++.
T Consensus       267 ~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWi-----gt~~~Gl~~~~~  340 (781)
T 3v9f_A          267 KDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWI-----GTWGGGINFISN  340 (781)
T ss_dssp             TTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEE-----EEBSSCEEEECS
T ss_pred             CCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEE-----EecCCeEEEeCC
Confidence            3444 4455554568889987665322111              1234588888877544322     455677888887


Q ss_pred             cCCCccccc-------C---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc---cCCCCCeEEEEEcCCCC
Q 035621           72 WSSTPLHNI-------P---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF---SAHDKPVSCLKISPDGS  138 (387)
Q Consensus        72 ~~~~~~~~~-------~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~  138 (387)
                      .++......       .   ....|.++...++|. |..|+.++-|..||..+++.....   ......|.++...+++.
T Consensus       341 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~  419 (781)
T 3v9f_A          341 APPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN  419 (781)
T ss_dssp             SCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC
T ss_pred             CCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC
Confidence            654332211       0   224688888888776 445665566999997654332211   12346789999888776


Q ss_pred             EEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee---ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE
Q 035621          139 LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV---AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH  215 (387)
Q Consensus       139 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  215 (387)
                      + ..|+.++-+..+|...            . ....+.   .....|.++...++  +. |..|+. +-|..||..+++.
T Consensus       420 l-Wigt~~~Gl~~~~~~~------------~-~~~~~~~~~~~~~~v~~i~~d~~--g~-lwigt~-~Gl~~~~~~~~~~  481 (781)
T 3v9f_A          420 L-WFGTYLGNISYYNTRL------------K-KFQIIELEKNELLDVRVFYEDKN--KK-IWIGTH-AGVFVIDLASKKV  481 (781)
T ss_dssp             E-EEEETTEEEEEECSSS------------C-EEEECCSTTTCCCCEEEEEECTT--SE-EEEEET-TEEEEEESSSSSC
T ss_pred             E-EEEeccCCEEEEcCCC------------C-cEEEeccCCCCCCeEEEEEECCC--CC-EEEEEC-CceEEEeCCCCeE
Confidence            4 4466666788887621            1 112221   13356777765444  34 444555 5588999887654


Q ss_pred             EEEEec------CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEE
Q 035621          216 LSTVTF------PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLV  289 (387)
Q Consensus       216 ~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  289 (387)
                      ......      ...|.++...++|...+ |+.++-+..++............      ..-....|.++...++|.+.+
T Consensus       482 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~------~~l~~~~i~~i~~d~~g~lWi  554 (781)
T 3v9f_A          482 IHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQY------EGFCSNTINQIYRSSKGQMWL  554 (781)
T ss_dssp             CEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTT------TTCSCSCEEEEEECTTSCEEE
T ss_pred             EecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCC------CCCCCCeeEEEEECCCCCEEE
Confidence            433221      35788999988886554 45444477787765321111100      011245689999988887655


Q ss_pred             EEeCCCcEEEEECCCccE
Q 035621          290 SAAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       290 s~~~dg~i~iwd~~~~~~  307 (387)
                      +. .+|.|..||..+++.
T Consensus       555 ~T-~~Glv~~~d~~~~~~  571 (781)
T 3v9f_A          555 AT-GEGLVCFPSARNFDY  571 (781)
T ss_dssp             EE-TTEEEEESCTTTCCC
T ss_pred             EE-CCCceEEECCCCCcE
Confidence            44 466558898877654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.60  E-value=1.4e-06  Score=81.93  Aligned_cols=242  Identities=13%  Similarity=0.022  Sum_probs=141.0

Q ss_pred             CCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCC----CceeEEccCCCCCeEEEEEcCC
Q 035621           62 GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGG-LSGNVYAISVPK----GDILRSFSAHDKPVSCLKISPD  136 (387)
Q Consensus        62 ~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~  136 (387)
                      ..+.|+..++...+....+.....+..++|.+.+..|+... ..+.|+.+++..    ......+.........|++.+.
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            34578888887766655555556788999999777777664 457899999865    2222222222234567888864


Q ss_pred             C-CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCC-CcEEEEeCCCC
Q 035621          137 G-SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMD-CTCKFWRLLNG  213 (387)
Q Consensus       137 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d-~~i~iwd~~~~  213 (387)
                      + +++++-...+.|.++++.             +.....+ .........+++.|.. +.++++-... +.|..+++...
T Consensus       464 ~g~LY~tD~~~~~I~v~d~d-------------g~~~~~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~  529 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTK-------------GVKRKTLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGV  529 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSS-------------SCCEEEECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSC
T ss_pred             CCcEEEEeccCCeEEEEecC-------------CCceEEEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCC
Confidence            4 444444566789888872             1122222 2222345677777764 3444444333 67888877533


Q ss_pred             cEEEEEe-cCCceeEEEeCCCCCeEEEE-ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621          214 THLSTVT-FPCAIMGLALDPTETDFFAA-GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA  291 (387)
Q Consensus       214 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  291 (387)
                      .....+. .-...+.|+++|++..|+.+ ...+.|..+++....+..      +.. ..........|++..+ .++++.
T Consensus       530 ~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~------~~~-~~~~~~~P~glavd~~-~lywtd  601 (699)
T 1n7d_A          530 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT------ILE-DEKRLAHPFSLAVFED-KVFWTD  601 (699)
T ss_dssp             CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEE------ECC-CSSSCSSCCCCEEETT-EEEEEC
T ss_pred             CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEE------EEe-cCCcCCCceEeEEECC-EEEEEe
Confidence            2222111 22456789999987666655 457789999886422111      110 0011223445666554 455566


Q ss_pred             eCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          292 AEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       292 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      ...+.|..++..+++.+..+..... .+++|.+..
T Consensus       602 ~~~~~V~~~d~~~G~~~~~i~~~~~-~P~~i~v~~  635 (699)
T 1n7d_A          602 IINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFH  635 (699)
T ss_dssp             STTTCEEEEETTTEEEEECCCTTCS-SCCCCCBCS
T ss_pred             CCCCeEEEEEccCCCceEEeecCCC-CCcEEEEeC
Confidence            6778999999999998888765432 455554443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.56  E-value=0.00045  Score=63.99  Aligned_cols=227  Identities=9%  Similarity=-0.032  Sum_probs=142.9

Q ss_pred             CCCeEEEEEccCCCcccccCC--CCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCC
Q 035621           62 GSGSVHLYNLWSSTPLHNIPV--PEPVAPLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS  138 (387)
Q Consensus        62 ~d~~v~vw~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  138 (387)
                      ....|+..+++.......+..  -..+..++|.+.+..|+.+ ..++.|..+++........+.........+++.+.+.
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            456788888876554333332  2468899999976666655 4568899999866544444433334578899987655


Q ss_pred             EE-EEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEE-eCCCcEEEEeCCCCcE
Q 035621          139 LL-ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISC-SMDCTCKFWRLLNGTH  215 (387)
Q Consensus       139 ~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~  215 (387)
                      .| ++-...+.|.+.++..             .....+ ...-.....|++.|.. +.++.+- +..+.|...++.....
T Consensus        93 ~LY~tD~~~~~I~v~~~dG-------------~~~~~l~~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~r~~~dG~~~  158 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDG-------------QHRQVLVWKDLDSPRALALDPAE-GFMYWTEWGGKPKIDRAAMDGSER  158 (628)
T ss_dssp             EEEEEETTTTEEEEEETTS-------------TTCEEEECSSCCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCSC
T ss_pred             EEEEEECCCCEEEEEecCC-------------CcEEEEEeCCCCCcccEEEccCC-CeEEEeCCCCCCEEEEEeCCCCce
Confidence            55 4444567888888721             111222 1333456789998864 3444443 2256788888765544


Q ss_pred             EEEEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC
Q 035621          216 LSTVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED  294 (387)
Q Consensus       216 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  294 (387)
                      ...+..-.....++++++++.|+.+. ..+.|..+++.....       .+.   .........+++.. +..+++-...
T Consensus       159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-------~v~---~~~l~~P~glav~~-~~ly~tD~~~  227 (628)
T 4a0p_A          159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-------EVI---ADDLPHPFGLTQYQ-DYIYWTDWSR  227 (628)
T ss_dssp             EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEE---EECCSCEEEEEEET-TEEEEEETTT
T ss_pred             EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-------EEe---eccCCCceEEEEEC-CEEEEecCCC
Confidence            33344446788999999877777665 477899988865321       111   12233456788865 4555555567


Q ss_pred             CcEEEEECCCccEEEEeec
Q 035621          295 GSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       295 g~i~iwd~~~~~~~~~~~~  313 (387)
                      +.|...|..+++....+..
T Consensus       228 ~~I~~~dk~tg~~~~~l~~  246 (628)
T 4a0p_A          228 RSIERANKTSGQNRTIIQG  246 (628)
T ss_dssp             TEEEEEETTTCCSCEEEEC
T ss_pred             CEEEEEECCCCCceEEEec
Confidence            8899999877765555543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.55  E-value=0.00015  Score=69.07  Aligned_cols=198  Identities=9%  Similarity=-0.002  Sum_probs=109.7

Q ss_pred             CceeEEEc-Cccceeeeccc-cCCCCCeEEEEEccCC-CcccccCCCCCeeeEEeccCCCEEEEecCC-----CcEEEEe
Q 035621           40 PRRGLTFA-GKPFIAASHIS-PTTGSGSVHLYNLWSS-TPLHNIPVPEPVAPLATTADGSYLFTGGLS-----GNVYAIS  111 (387)
Q Consensus        40 ~v~~~~~~-~~~~~~~~~~~-~~~~d~~v~vw~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d  111 (387)
                      .+....|+ |++..++-..- .|+....|+++|+.++ +.+.. ........++|+|||+.|+....+     ..|+.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            57788999 98765443222 2333457999999988 63211 111224578999999888877654     2688888


Q ss_pred             CCCCce--eEEcc-CCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCcccccCCCCCCCCccc-eEee-eccCCCeE
Q 035621          112 VPKGDI--LRSFS-AHDKPVSCLKISPDGSLLISGGD---DGVIATVPIFQLVDEHTDDKNPDDLM-LQKF-VAHNDSVT  183 (387)
Q Consensus       112 ~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~i~  183 (387)
                      +.+++.  ...+. ........+.|+|||++|+..+.   ...|.++|+...          .... +..+ ........
T Consensus       254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~----------~~~~~~~~l~~~~~~~~~  323 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG----------NAHNTLEIVRPREKGVRY  323 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC----------TTCCCEEESSCCCTTCCE
T ss_pred             CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC----------CCCceeEEeecCCCCceE
Confidence            877642  22222 22344678899999998876653   345777887321          0111 0222 22334445


Q ss_pred             EEEEeeCCCCceEEEEeCC----CcEEEEeCCCC-cEEE-EEecCC--ceeEEEeCCCCCeEEEEccCCcEEEEec
Q 035621          184 AITCCIGSFNSIIISCSMD----CTCKFWRLLNG-THLS-TVTFPC--AIMGLALDPTETDFFAAGSDGLIYKGLL  251 (387)
Q Consensus       184 ~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~-~~~~-~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~  251 (387)
                      ++.|+..  +.+++....+    ..|..+|+.++ .... .+.+..  .+..+.+. .+..+++...++...+|-+
T Consensus       324 s~~~~~g--~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          324 DVQMHGT--SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             EEEEETT--TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEE
T ss_pred             EEeeeeC--CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence            5544332  2444444433    36777777653 2222 233333  34555554 2334455556776554433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.55  E-value=0.00018  Score=58.06  Aligned_cols=200  Identities=13%  Similarity=0.161  Sum_probs=123.0

Q ss_pred             CCeeeEEeccCCCEEEE-ecCCCcEEEEeCCCCceeEEccC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           84 EPVAPLATTADGSYLFT-GGLSGNVYAISVPKGDILRSFSA-HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                      ..+..+++.|+++.|++ ...++.|...|.. ++.++.+.- -....-.+++.+++.++++.-.++.+.++++.....  
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~--  103 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE--  103 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC--
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe--
Confidence            56999999998776654 6677899999987 888777642 235678899999888777766778888888732110  


Q ss_pred             CCCCCCCccceEee------eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC---CCcEEEEEe--------cCCc
Q 035621          162 TDDKNPDDLMLQKF------VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL---NGTHLSTVT--------FPCA  224 (387)
Q Consensus       162 ~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~--------~~~~  224 (387)
                             ...+...      ...+.....+++.|..  +.|+++.......+|.+.   ....+..+.        .-..
T Consensus       104 -------i~~~~~~~~~~~~~~~N~g~EGLA~d~~~--~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d  174 (255)
T 3qqz_A          104 -------VKILKKIKIPLQESPTNCGFEGLAYSRQD--HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD  174 (255)
T ss_dssp             -------EEEEEEEECCCSSCCCSSCCEEEEEETTT--TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred             -------eeeeeeeccccccccccCCcceEEEeCCC--CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence                   0011111      1234557899999885  445555544444455443   111222221        1235


Q ss_pred             eeEEEeCCCCCeEEE-EccCCcEEEEeccccccccccccceeEeecccc------cccEEEEEEecCCCEEEEEeCCCcE
Q 035621          225 IMGLALDPTETDFFA-AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH------DGVVVSVMMMNEGKNLVSAAEDGSV  297 (387)
Q Consensus       225 v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~dg~i  297 (387)
                      +..++++|....+++ ...+..+..+|......       ....+..+.      -...-.|+|.++|+++++ ++-+.+
T Consensus       175 ~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~-------~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~  246 (255)
T 3qqz_A          175 VSGAEFNQQKNTLLVLSHESRALQEVTLVGEVI-------GEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRF  246 (255)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEECTTCCEE-------EEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEE
T ss_pred             ceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEE-------EEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceE
Confidence            789999997655544 55577888888765211       111111111      135689999999986665 666767


Q ss_pred             EEEECC
Q 035621          298 YIWEIE  303 (387)
Q Consensus       298 ~iwd~~  303 (387)
                      +.|.-.
T Consensus       247 y~f~~~  252 (255)
T 3qqz_A          247 YRFTPQ  252 (255)
T ss_dssp             EEEEC-
T ss_pred             EEEEec
Confidence            766543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.54  E-value=0.00035  Score=60.72  Aligned_cols=223  Identities=9%  Similarity=-0.044  Sum_probs=132.7

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCee
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVA   87 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~   87 (387)
                      +|+.+. ...|+..++........+. ....+..++|++ +..+...    -...+.|..++.........+. ......
T Consensus        89 ~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~----D~~~~~I~r~~~~g~~~~~~~~~~~~~p~  162 (386)
T 3v65_B           89 VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWS----DVTLDRILRANLNGSNVEEVVSTGLESPG  162 (386)
T ss_dssp             EEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEE----ETTTTEEEEEETTSCCEEEEECSSCSCCC
T ss_pred             eeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEE----eCCCCcEEEEecCCCCcEEEEeCCCCCcc
Confidence            343333 3578888887655444443 334478899986 3322222    3456789999987654333332 224567


Q ss_pred             eEEeccCCCEEE-EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC-C-CcEEEEeCCcccccCCCC
Q 035621           88 PLATTADGSYLF-TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD-D-GVIATVPIFQLVDEHTDD  164 (387)
Q Consensus        88 ~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~  164 (387)
                      .+++.+.+..|+ +-...+.|.+.++........+.........++++|.+..|+.+.. . +.|..+++.         
T Consensus       163 glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d---------  233 (386)
T 3v65_B          163 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD---------  233 (386)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT---------
T ss_pred             EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC---------
Confidence            889998655554 4455678999998655433334434456799999997666665543 3 677777762         


Q ss_pred             CCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEcc
Q 035621          165 KNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       165 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~  242 (387)
                          +.....+ ...-.....|+++|.. +.++++-+..+.|..+|+........+. .......+++ ..+..+++-..
T Consensus       234 ----G~~~~~~~~~~~~~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~  307 (386)
T 3v65_B          234 ----GSGRRIIADTHLFWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWH  307 (386)
T ss_dssp             ----SCSCEEEECSSCSCEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETT
T ss_pred             ----CCCcEEEEECCCCCeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCC
Confidence                1122222 2223456789998764 4566666667889999986543332332 2345667777 33444455555


Q ss_pred             CCcEEEEeccc
Q 035621          243 DGLIYKGLLKY  253 (387)
Q Consensus       243 dg~i~i~d~~~  253 (387)
                      .+.|..++..+
T Consensus       308 ~~~V~~~~~~~  318 (386)
T 3v65_B          308 TKSINSANKFT  318 (386)
T ss_dssp             TTEEEEEETTT
T ss_pred             CCeEEEEECCC
Confidence            67777776433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.53  E-value=8.2e-05  Score=62.40  Aligned_cols=203  Identities=10%  Similarity=0.183  Sum_probs=127.6

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccce----eeeccccCCC--CCeEEEEEcc-CCCcccc
Q 035621            7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFI----AASHISPTTG--SGSVHLYNLW-SSTPLHN   79 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~--d~~v~vw~~~-~~~~~~~   79 (387)
                      ...+++.....+-+.+||+ +|+.++.+..  +.++.+..-|+..+    ..-.+++.-.  +++|.+|++. ....+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3445555556678999999 8999988864  55777777663210    0011223444  6899999774 2223444


Q ss_pred             cC-------CC-CCeeeEEe--ccC-CC-EEEEecCCCcEEEEeCC-------CCceeEEccCCCCCeEEEEEcCCCCEE
Q 035621           80 IP-------VP-EPVAPLAT--TAD-GS-YLFTGGLSGNVYAISVP-------KGDILRSFSAHDKPVSCLKISPDGSLL  140 (387)
Q Consensus        80 ~~-------~~-~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l  140 (387)
                      +.       .. ..+..+++  +|. +. ++++...+|.+..|++.       +.+.++++.. ...+-.+...+....|
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L  194 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL  194 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence            42       11 56777888  664 43 68888889999999882       3355677764 4578889999988899


Q ss_pred             EEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee-c-cCCCeEEEEEeeCCCCc-eEEEEe-CCCcEEEEeCC-CCcE
Q 035621          141 ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-A-HNDSVTAITCCIGSFNS-IIISCS-MDCTCKFWRLL-NGTH  215 (387)
Q Consensus       141 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~-~l~s~~-~d~~i~iwd~~-~~~~  215 (387)
                      +.+-++..|..++....       .......+..+. + -...+..|++-+..+++ +|++++ .+.+..+||.. +.+.
T Consensus       195 yv~eEd~GIw~~da~p~-------~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~  267 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPD-------GGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKY  267 (355)
T ss_dssp             EEEETTTEEEEEECSTT-------SCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCE
T ss_pred             EEecccceEEEEeCCcC-------CCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcE
Confidence            99999876655554110       001122333321 1 22468888886544333 444444 67899999996 6677


Q ss_pred             EEEEe
Q 035621          216 LSTVT  220 (387)
Q Consensus       216 ~~~~~  220 (387)
                      +..|.
T Consensus       268 vg~f~  272 (355)
T 3amr_A          268 VADFR  272 (355)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.47  E-value=4.6e-05  Score=67.28  Aligned_cols=241  Identities=9%  Similarity=-0.032  Sum_probs=133.2

Q ss_pred             CceeEEEcCc---cceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC-----cEEEEe
Q 035621           40 PRRGLTFAGK---PFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG-----NVYAIS  111 (387)
Q Consensus        40 ~v~~~~~~~~---~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d  111 (387)
                      ....++++|+   +.+...     ...+.|+.++..++..............++++++|+ |+++...+     .+..++
T Consensus       140 ~P~gvavd~~s~~g~Lyv~-----D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWV-----GQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEE-----CBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred             CCceEEEccccCCCEEEEE-----eCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence            3567888873   322221     112789999987776655555556789999999999 44444321     233333


Q ss_pred             CCCCce-eEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee-ec-cCCCeEEEEE
Q 035621          112 VPKGDI-LRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-VA-HNDSVTAITC  187 (387)
Q Consensus       112 ~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~~~~  187 (387)
                      ...+.. ...+. .......++++| ++.+.++-..++.|+.+|..            .......+ .. ....-..+++
T Consensus       214 ~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~------------~g~~~~~~~~~~~~~~~~~ia~  280 (433)
T 4hw6_A          214 RASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA------------TGTLTEEEVMMDTKGSNFHIVW  280 (433)
T ss_dssp             GGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT------------TCCEEEEEEECSCCSSCEEEEE
T ss_pred             CCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC------------CCeEEEEEeccCCCCCcccEEE
Confidence            322211 01121 233456789999 66666666677888888872            12221111 11 1122346888


Q ss_pred             eeCCCCc-eEEEEeCCCcEEEEeCC--CCcE--EEEEec----------------CCceeEEEe---------CCCCCeE
Q 035621          188 CIGSFNS-IIISCSMDCTCKFWRLL--NGTH--LSTVTF----------------PCAIMGLAL---------DPTETDF  237 (387)
Q Consensus       188 ~~~~~~~-~l~s~~~d~~i~iwd~~--~~~~--~~~~~~----------------~~~v~~~~~---------~~~~~~l  237 (387)
                      +|++  + ++++-...+.|+.+++.  ++..  ...+..                -.....+++         .+++.++
T Consensus       281 dpdG--~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ly  358 (433)
T 4hw6_A          281 HPTG--DWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFY  358 (433)
T ss_dssp             CTTS--SEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred             eCCC--CEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEE
Confidence            8875  5 55555667889998765  2321  112211                123667888         6777777


Q ss_pred             EEEccCCcEEEEecccccccccccccee-------Ee-e-cccccccEEEEEEe-cCCCEEEEEeCCCcEEEEECC
Q 035621          238 FAAGSDGLIYKGLLKYQSRQQMHKGQEL-------VT-L-ANRHDGVVVSVMMM-NEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~-~-~~~~~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      ++-...+.|+.++.. +...... +...       .. . ....-.....++++ ++|.++++=...+.|+.++++
T Consensus       359 vaD~~n~~I~~~~~~-G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          359 FCDRDSHTVRVLTPE-GRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEETTTTEEEEECTT-SEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEECCCCEEEEECCC-CCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            766778889888742 2111000 0000       00 0 00112347889999 566666665566778877754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.46  E-value=0.00057  Score=60.33  Aligned_cols=238  Identities=7%  Similarity=-0.034  Sum_probs=129.2

Q ss_pred             ccccCC---CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCe-EEEEEccCCCc-
Q 035621            2 LHHLPC---NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGS-VHLYNLWSSTP-   76 (387)
Q Consensus         2 l~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~-v~vw~~~~~~~-   76 (387)
                      |+|+|+   ++++++ ...+.|+.+|+.+++...... .......+++++++.+...... ...+.. +...+...+.. 
T Consensus       144 vavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~-~~~~~~gv~~~~~~~~~~~  220 (433)
T 4hw6_A          144 MMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQ-SSDTNTGIYLFTRASGFTE  220 (433)
T ss_dssp             EEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECC-SCTTSEEEEEECGGGTTCC
T ss_pred             EEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCC-CCcccceEEEEECCCCeec
Confidence            467774   554444 333889999988777655443 4445789999986543322100 001112 33333221111 


Q ss_pred             ccccCCCCCeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEc-c-CCCCCeEEEEEcCCCCEEEEE-eCCCcEEEE
Q 035621           77 LHNIPVPEPVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSF-S-AHDKPVSCLKISPDGSLLISG-GDDGVIATV  152 (387)
Q Consensus        77 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw  152 (387)
                      ...+..-.....+++.| +|.+.++-..++.|+.+|..++.....+ . +....-..++|+|++++|+.+ ...+.|+.+
T Consensus       221 ~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~  300 (433)
T 4hw6_A          221 RLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRV  300 (433)
T ss_dssp             EEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEE
Confidence            01111224567789999 6665555556788999998877652222 2 112233579999999955554 456788887


Q ss_pred             eCCcccccCCCCCCCCccceEeeec---------------cCCCeEEEEEee-------CCCCceEEEEeCCCcEEEEeC
Q 035621          153 PIFQLVDEHTDDKNPDDLMLQKFVA---------------HNDSVTAITCCI-------GSFNSIIISCSMDCTCKFWRL  210 (387)
Q Consensus       153 d~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~~~~~~~-------~~~~~~l~s~~~d~~i~iwd~  210 (387)
                      +......        .......+.+               .-.....+++.+       +.+++++++-...+.|+.++.
T Consensus       301 ~~d~~~~--------~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          301 DYNRETG--------KLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             EBCTTTC--------CBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             eCCCCCc--------ccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            7631100        0000001111               112345677731       233567777667788999984


Q ss_pred             CCCcEEEEEecC------------------CceeEEEeC-CCCCeEEEEccCCcEEEEec
Q 035621          211 LNGTHLSTVTFP------------------CAIMGLALD-PTETDFFAAGSDGLIYKGLL  251 (387)
Q Consensus       211 ~~~~~~~~~~~~------------------~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~  251 (387)
                       ++.........                  .....++++ +++.++++-..++.|+.+++
T Consensus       373 -~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          373 -EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             -TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             -CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence             55433322110                  136778888 45555554455677777665

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.43  E-value=0.00057  Score=57.93  Aligned_cols=264  Identities=11%  Similarity=0.066  Sum_probs=133.9

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEec----cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHF----SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      .|.+++..+++| ..|.|.. ....|+.=...    ......+.++.+.++..+.      ++..+.|.. ..+.++.-.
T Consensus        42 ~~~~~~~~~~~G-~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~------~g~~g~i~~-S~DgG~tW~  112 (327)
T 2xbg_A           42 SFIDRHHGWLVG-VNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWI------VGEPPIMLH-TTDGGQSWS  112 (327)
T ss_dssp             EESSSSCEEEEE-TTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEE------EEETTEEEE-ESSTTSSCE
T ss_pred             EECCCCcEEEEc-CCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecCCeEEE------EECCCeEEE-ECCCCCCce
Confidence            455566666755 4565532 22333221111    1123458888888743332      234454433 223343322


Q ss_pred             ccC----CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeE-EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621           79 NIP----VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR-SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP  153 (387)
Q Consensus        79 ~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  153 (387)
                      ...    .+..+..+.+.+++..++++ .+|.|..- ...++.-. ........+..+.+.|++.+++.+...+..+-.|
T Consensus       113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d  190 (327)
T 2xbg_A          113 QIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE  190 (327)
T ss_dssp             ECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred             ECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence            222    23457778887777666655 45544322 12333222 2234456789999999888777665443333333


Q ss_pred             CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC-----CceeEE
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-----CAIMGL  228 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~v~~~  228 (387)
                      -..          .....+.  ......+..+.+.++  +.+ +..+.+|.+++.+...++.-..+..+     ..+..+
T Consensus       191 ~gG----------~tW~~~~--~~~~~~~~~~~~~~~--g~~-~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v  255 (327)
T 2xbg_A          191 PGQ----------TAWEPHN--RTTSRRLHNMGFTPD--GRL-WMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDL  255 (327)
T ss_dssp             TTC----------SSCEEEE--CCSSSCEEEEEECTT--SCE-EEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEE
T ss_pred             CCC----------CceeECC--CCCCCccceeEECCC--CCE-EEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEE
Confidence            200          1111111  123456777877665  344 45556788777643323333323222     357889


Q ss_pred             EeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          229 ALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       229 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      ++.+++..++++. +|.++ +....+....      ...........+.++.|.+++. ++.++.+|.|.-++
T Consensus       256 ~~~~~~~~~~~g~-~g~i~-~S~DgG~tW~------~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          256 AYRTPNEVWLAGG-AGALL-CSQDGGQTWQ------QDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             EESSSSCEEEEES-TTCEE-EESSTTSSCE------ECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             EecCCCEEEEEeC-CCeEE-EeCCCCcccE------EcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            9998777666554 66663 3333221111      1000001234567888876554 55666788777665

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.41  E-value=0.00015  Score=63.94  Aligned_cols=155  Identities=7%  Similarity=0.016  Sum_probs=98.9

Q ss_pred             CeeeEEecc-CCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC-C----cEEEEeCCccc
Q 035621           85 PVAPLATTA-DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD-G----VIATVPIFQLV  158 (387)
Q Consensus        85 ~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g----~i~iwd~~~~~  158 (387)
                      ....++++| ++..|+++...+.|+.+|+..+...... ........++|++++++|+++... +    .+..++...  
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g--  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES--  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG--
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC--
Confidence            467789998 4566766655588999998776644433 345668999999999966666542 2    233333210  


Q ss_pred             ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec--CCceeEEEeCCCCCe
Q 035621          159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF--PCAIMGLALDPTETD  236 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~  236 (387)
                               .......+. .......+++.|+. +.++++-..++.|..++...+........  ......++|+|++++
T Consensus       215 ---------~~~~~~~l~-~~~~p~giavdp~~-g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~  283 (430)
T 3tc9_A          215 ---------GFKVITELT-KGQNCNGAETHPIN-GELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY  283 (430)
T ss_dssp             ---------TSCSEEEEE-ECSSCCCEEECTTT-CCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred             ---------ceeeeeeec-cCCCceEEEEeCCC-CEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence                     011011222 12334567788742 46666766788999999887654333332  245789999999996


Q ss_pred             EEEE-ccCCcEEEEeccc
Q 035621          237 FFAA-GSDGLIYKGLLKY  253 (387)
Q Consensus       237 l~~~-~~dg~i~i~d~~~  253 (387)
                      |+++ ...+.|+.++...
T Consensus       284 lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          284 AYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEEETTTTEEEEEEEET
T ss_pred             EEEEECCCCEEEEEeCCc
Confidence            5555 5578899988764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.39  E-value=0.00077  Score=57.67  Aligned_cols=215  Identities=9%  Similarity=-0.047  Sum_probs=127.0

Q ss_pred             CcEEEEeCCCCceeEeccCCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCCcccccCC-CCCeeeEEeccCC
Q 035621           18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV-PEPVAPLATTADG   95 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~-~~~v~~~~~~~~~   95 (387)
                      ..|+..++........+.. ...+..++|++. ..+...    -...+.|..++.........+.. ......+++.+.+
T Consensus        53 ~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~----D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~  127 (349)
T 3v64_C           53 IDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWS----DVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVH  127 (349)
T ss_dssp             SCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEE----ETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred             cceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEE----eccCCceEEEecCCCCceEEEeCCCCCccEEEEecCC
Confidence            4688888765544433333 334788999863 322221    34567899999876654333322 2456789999865


Q ss_pred             CEEE-EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe-CC-CcEEEEeCCcccccCCCCCCCCccce
Q 035621           96 SYLF-TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG-DD-GVIATVPIFQLVDEHTDDKNPDDLML  172 (387)
Q Consensus        96 ~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~  172 (387)
                      ..|+ +-...+.|.+.++........+.........++++|.+..|+... .. +.|..+++.             +...
T Consensus       128 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d-------------G~~~  194 (349)
T 3v64_C          128 DKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-------------GSGR  194 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-------------SCSC
T ss_pred             CeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC-------------CCCc
Confidence            5554 445567899999865543333333445679999999666555544 34 678877762             1111


Q ss_pred             Eee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEe
Q 035621          173 QKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGL  250 (387)
Q Consensus       173 ~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d  250 (387)
                      ..+ ...-.....+++++.. +.+.++-...+.|..+|+........+. .......+++ ..+..+++-...+.|..++
T Consensus       195 ~~~~~~~~~~PnGla~d~~~-~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          195 RIIADTHLFWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             EESCCSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCcceEEEeCCC-CEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence            222 1223456789998764 4566666667889999986543332232 2345566777 2344444444566776666


Q ss_pred             cc
Q 035621          251 LK  252 (387)
Q Consensus       251 ~~  252 (387)
                      ..
T Consensus       273 ~~  274 (349)
T 3v64_C          273 KF  274 (349)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.35  E-value=0.00087  Score=56.47  Aligned_cols=223  Identities=11%  Similarity=-0.023  Sum_probs=132.5

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccC----CCcccccC-CC
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWS----STPLHNIP-VP   83 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~----~~~~~~~~-~~   83 (387)
                      +|+.+.. ..|+..|+.+.+....+. ....+.+++|++. ..+...    -...+.|..+++..    ......+. .-
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~----D~~~~~I~~~~~~g~~~~~~~~~~~~~~~   76 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWS----DLSQRMICSTQLDRAHGVSSYDTVISRDI   76 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEE----ETTTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEE----ECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence            3444443 579999998776555444 3445788999873 222221    34578899999875    22222222 22


Q ss_pred             CCeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC--CcEEEEeCCccccc
Q 035621           84 EPVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD--GVIATVPIFQLVDE  160 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~  160 (387)
                      .....+++.+.+..|+ +-...+.|.++++........+.........++++|.+..|+.+...  +.|...++.     
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-----  151 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-----  151 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-----
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-----
Confidence            4567899987555554 44567899999986544333333334567899999976666655543  678777762     


Q ss_pred             CCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCCCe
Q 035621          161 HTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTETD  236 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~  236 (387)
                              +.....+ ...-.....+++.++. +.++++-+..+.|..+|+...........   ......+++. .+..
T Consensus       152 --------G~~~~~~~~~~~~~P~gla~d~~~-~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~l  221 (316)
T 1ijq_A          152 --------GVDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKV  221 (316)
T ss_dssp             --------SCCEEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEE
T ss_pred             --------CCCeEEEEECCCCCceEEEEeccC-CEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEE
Confidence                    2222222 1223456789998764 35556666678999999874332222221   2346677774 3444


Q ss_pred             EEEEccCCcEEEEeccc
Q 035621          237 FFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       237 l~~~~~dg~i~i~d~~~  253 (387)
                      +++-...+.|..++..+
T Consensus       222 y~~d~~~~~V~~~~~~~  238 (316)
T 1ijq_A          222 FWTDIINEAIFSANRLT  238 (316)
T ss_dssp             EEEETTTTEEEEEETTT
T ss_pred             EEEECCCCeEEEEeCCC
Confidence            55555577788777654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.32  E-value=0.0035  Score=62.20  Aligned_cols=218  Identities=10%  Similarity=-0.011  Sum_probs=114.4

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEec-cCCCCCceeEEEcCc--cceeeeccccCCC-CCeEEEEEccCCCcccccCCC
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHF-SGSRSPRRGLTFAGK--PFIAASHISPTTG-SGSVHLYNLWSSTPLHNIPVP   83 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~~~~~~~~~~~-d~~v~vw~~~~~~~~~~~~~~   83 (387)
                      +.+++.++ ++.+.++++.+++....- ..-...|.|+++.+.  +...+..++.|.. |++++++++.+.+.+.....+
T Consensus       523 ~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~  601 (1158)
T 3ei3_A          523 SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLG  601 (1158)
T ss_dssp             SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECC
Confidence            34455553 466777776655322111 113456999998752  1112334445665 999999999876655443332


Q ss_pred             --CCeeeEEec--cCCCEEEEecCCCcEEEEeC--CCCceeEE---ccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 035621           84 --EPVAPLATT--ADGSYLFTGGLSGNVYAISV--PKGDILRS---FSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        84 --~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~--~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  154 (387)
                        ....++.+.  ....+|.+|-.||.+..+.+  .++++...   +-+ ..++.-..+...+..-+.+..+....++.-
T Consensus       602 ~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~  680 (1158)
T 3ei3_A          602 GEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSS  680 (1158)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEES
T ss_pred             CCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEc
Confidence              233444333  23457889999998765554  45544322   212 345544444444443333333444444432


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCCeEEEE-EeeCCCCceEEEEeCCCcEEEEeCCCC--cEEEEEecCCceeEEEeC
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAIT-CCIGSFNSIIISCSMDCTCKFWRLLNG--THLSTVTFPCAIMGLALD  231 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~v~~~~~~  231 (387)
                                   ... +.-.......+..++ |+.....+-++..+ ++.++|..+.+.  -.+++++....+..++++
T Consensus       681 -------------~~~-l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~  745 (1158)
T 3ei3_A          681 -------------NHK-LVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQ  745 (1158)
T ss_dssp             -------------SSS-EEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEE
T ss_pred             -------------CCc-eEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEc
Confidence                         111 111111112333332 32221123344333 456998887543  345666778899999999


Q ss_pred             CCCCeEEEEcc
Q 035621          232 PTETDFFAAGS  242 (387)
Q Consensus       232 ~~~~~l~~~~~  242 (387)
                      |..+.++++..
T Consensus       746 ~~~~~~~v~~~  756 (1158)
T 3ei3_A          746 EVSQCFGVLSS  756 (1158)
T ss_dssp             GGGTEEEEEEE
T ss_pred             CCCCEEEEEEE
Confidence            99887776653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.29  E-value=0.0014  Score=56.31  Aligned_cols=237  Identities=12%  Similarity=0.126  Sum_probs=149.2

Q ss_pred             ccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC-CcccccCC
Q 035621            4 HLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-TPLHNIPV   82 (387)
Q Consensus         4 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-~~~~~~~~   82 (387)
                      .+|..+.+|.-. ...+.|+|+++.+.+..+.- ..+|.--.|-....+..-      .+..|+-|+++.. .+.+.+..
T Consensus        73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~~l~lV------T~taVyHWsi~~~s~P~kvFdR  144 (494)
T 1bpo_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALV------TDNAVYHWSMEGESQPVKMFDR  144 (494)
T ss_dssp             ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETTEEEEE------CSSEEEEEESSSSCCCEEEEEC
T ss_pred             eCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCCeEEEE------cCCeeEEecccCCCCchhheec
Confidence            367777777765 57899999999998887764 345666677654433321      4678999999643 45544442


Q ss_pred             -----CCCeeeEEeccCCCEEEEec-------CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCC---CEEEEEeCC-
Q 035621           83 -----PEPVAPLATTADGSYLFTGG-------LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDG---SLLISGGDD-  146 (387)
Q Consensus        83 -----~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d-  146 (387)
                           ...|..-..+++.++++..+       -.|.+.+|..+.+ ..+.+.+|.+....+....+.   +.++.+... 
T Consensus       145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~  223 (494)
T 1bpo_A          145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ  223 (494)
T ss_dssp             CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECST
T ss_pred             chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence                 24577777888899877543       2367899997544 456677887665555443221   234444332 


Q ss_pred             --CcEEEEeCCcccccCCCCCCCCccceEeeec---cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 035621          147 --GVIATVPIFQLVDEHTDDKNPDDLMLQKFVA---HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-  220 (387)
Q Consensus       147 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-  220 (387)
                        +.+.+.++.......   ..-..+.+..+..   ..+--.++..++..  ..++.-+.-|.|++||+.++.++..-+ 
T Consensus       224 ~g~kLhi~Ei~~~~~~~---~~f~kk~vdv~fppe~~~DFPvamqvs~ky--gviyviTK~G~i~lyDleTgt~i~~nrI  298 (494)
T 1bpo_A          224 AGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKH--DVVFLITKYGYIHLYDLETGTCIYMNRI  298 (494)
T ss_dssp             TCCEEEEEECSCCCTTC---CCCCCEEEECCCCTTSTTCCEEEEEEETTT--TEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCcEEEEEEcCCCccCC---CCccceeeeeeCCcccccCceeEEEecccC--CEEEEEecCceEEEEecccceeeeeecc
Confidence              788888884321000   0001111111111   12333456666664  678888899999999999999998877 


Q ss_pred             cCCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621          221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       221 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  254 (387)
                      ....|...+.+....-++.....|.|.-..++..
T Consensus       299 s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             cCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            4556666666666566666668888777766654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.28  E-value=0.0016  Score=56.76  Aligned_cols=223  Identities=10%  Similarity=-0.024  Sum_probs=132.0

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccCC----CcccccC-CC
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSS----TPLHNIP-VP   83 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~----~~~~~~~-~~   83 (387)
                      +|+.+. ...|+..++........+. ....+.+++|++. ..+..+    -...+.|+.+++...    .....+. ..
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lyws----D~~~~~I~~~~~~g~~~~~~~~~~~~~~~  158 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWS----DLSQRMICSTQLDRAHGVSSYDTVISRDI  158 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEE----ETTTTEEEEEEC------CCCEEEECSSC
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEE----ecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence            344443 3678888887665444443 4455789999872 222221    345678888888652    1222222 23


Q ss_pred             CCeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCccccc
Q 035621           84 EPVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD--DGVIATVPIFQLVDE  160 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~  160 (387)
                      .....+++.+.+..|+ +-...+.|.+.++........+.........|+++|.+..|+....  .+.|...++.     
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-----  233 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-----  233 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-----
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-----
Confidence            4678899998544444 4456788999998765544444434456899999997666665553  3678888772     


Q ss_pred             CCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCCCe
Q 035621          161 HTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTETD  236 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~  236 (387)
                              +.....+ ...-.....|++.+.. +.+.++-...+.|..+|+........+..   -.....+++. .+..
T Consensus       234 --------G~~~~~~~~~~l~~P~glavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~l  303 (400)
T 3p5b_L          234 --------GVDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKV  303 (400)
T ss_dssp             --------SCSCEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEE
T ss_pred             --------CCccEEEEECCCCceEEEEEEeCC-CEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEE
Confidence                    2222222 2223567889998765 35555555678899999865433333322   2345566663 3344


Q ss_pred             EEEEccCCcEEEEeccc
Q 035621          237 FFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       237 l~~~~~dg~i~i~d~~~  253 (387)
                      +++-...+.|..++..+
T Consensus       304 ywtd~~~~~V~~~~~~~  320 (400)
T 3p5b_L          304 FWTDIINEAIFSANRLT  320 (400)
T ss_dssp             EEEESSSCSEEEEESSS
T ss_pred             EEecCCCCeEEEEEcCC
Confidence            44555577788877554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.26  E-value=0.0012  Score=60.98  Aligned_cols=227  Identities=11%  Similarity=-0.016  Sum_probs=130.9

Q ss_pred             CCCeEEEEEccCCC--cccccCCCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCCCce-eEEccCCCCCeEEEEEcCCC
Q 035621           62 GSGSVHLYNLWSST--PLHNIPVPEPVAPLATTADGSYLFTGG-LSGNVYAISVPKGDI-LRSFSAHDKPVSCLKISPDG  137 (387)
Q Consensus        62 ~d~~v~vw~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~  137 (387)
                      ....|+..++....  .......-..+..++|++.+..|+.+. ..+.|..+++..... ...+.........+++.+.+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            35678888886542  222333445688999999777777654 457888888865532 22333333578899999965


Q ss_pred             CEEE-EEeCCCcEEEEeCCcccccCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEe-CCCcEEEEeCCCCc
Q 035621          138 SLLI-SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCS-MDCTCKFWRLLNGT  214 (387)
Q Consensus       138 ~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~  214 (387)
                      ..|+ +-...+.|.+.++.             +.....+. ..-.....|++.|.. +.++++-- ..+.|...++....
T Consensus        96 ~~ly~~d~~~~~I~v~~~d-------------G~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG~~  161 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLD-------------GSLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSS  161 (619)
T ss_dssp             TEEEEEETTTTEEEEEETT-------------SCSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTSCS
T ss_pred             CEEEEEeCCCCEEEEEECC-------------CCCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCCCc
Confidence            5454 44567889999882             22222222 333456678888764 34444432 24567777765433


Q ss_pred             EEEEEe-cCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe
Q 035621          215 HLSTVT-FPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA  292 (387)
Q Consensus       215 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  292 (387)
                      ...... .-...+.++++++++.|+.+. ..+.|..+++....+....         .........+++..+ ..+++-.
T Consensus       162 ~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~---------~~~~~~P~gi~~~~~-~ly~td~  231 (619)
T 3s94_A          162 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---------KGSLPHPFALTLFED-ILYWTDW  231 (619)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------------CCCEEESSS-EEEEECT
T ss_pred             eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE---------eCCCCCceEEEEeCC-EEEEecC
Confidence            322222 334678999999877766664 4678888888653222111         111222346677655 4555555


Q ss_pred             CCCcEEEEECCCccEEEEee
Q 035621          293 EDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       293 ~dg~i~iwd~~~~~~~~~~~  312 (387)
                      ..+.|...|..+++....+.
T Consensus       232 ~~~~V~~~d~~tg~~~~~i~  251 (619)
T 3s94_A          232 STHSILACNKYTGEGLREIH  251 (619)
T ss_dssp             TTCSEEEEESSSCCCCEECC
T ss_pred             CCCEEEEEECCCCcccEEEe
Confidence            67889999988887655554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.24  E-value=0.0015  Score=54.92  Aligned_cols=224  Identities=9%  Similarity=-0.042  Sum_probs=129.5

Q ss_pred             EEEeeCCCCcEEEEeCCCCc-eeEeccCCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCCccc-ccC-CCCC
Q 035621           10 VILTSSPEGPITAYNPSSGA-ILAHFSGSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSSTPLH-NIP-VPEP   85 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~-~~~~   85 (387)
                      +|+.+. ...|+..++.... ....+......+.+++|.+. ..+...    -...+.|..++...+.... .+. .-..
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~----D~~~~~I~r~~~~g~~~~~~~~~~~l~~   80 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWS----DVSEEAIKRTEFNKTESVQNVVVSGLLS   80 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEE----ETTTTEEEEEETTSSSCCCEEEEECCSC
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEE----ECCCCcEEEEEccCCCceEEEEcCCCCC
Confidence            344443 4679999987653 11111112234668888873 222221    3456788888887653221 111 2245


Q ss_pred             eeeEEeccCCCEE-EEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCcccccCC
Q 035621           86 VAPLATTADGSYL-FTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD--DGVIATVPIFQLVDEHT  162 (387)
Q Consensus        86 v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~  162 (387)
                      ...+++.+.+..| ++-...+.|.++++........+.........+++.|.+..|+.+..  .+.|...++.       
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-------  153 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-------  153 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-------
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-------
Confidence            6788998755544 44456678999998654433333344556799999997666666553  5678777762       


Q ss_pred             CCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEE
Q 035621          163 DDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAA  240 (387)
Q Consensus       163 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~  240 (387)
                            +.....+ ...-..-+.++++++. +.+.++-+..+.|..+|+........+. .......+++.. +..+++-
T Consensus       154 ------G~~~~~~~~~~l~~Pnglavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd  225 (318)
T 3sov_A          154 ------GSSRFIIINSEIYWPNGLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTD  225 (318)
T ss_dssp             ------SCSCEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEE
T ss_pred             ------CCCeEEEEECCCCCccEEEEeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEe
Confidence                  1112222 1223456789998864 4555666667889999986433322222 234556677743 3444454


Q ss_pred             ccCCcEEEEeccc
Q 035621          241 GSDGLIYKGLLKY  253 (387)
Q Consensus       241 ~~dg~i~i~d~~~  253 (387)
                      ...+.|..++..+
T Consensus       226 ~~~~~V~~~~~~~  238 (318)
T 3sov_A          226 WSTHSILACNKYT  238 (318)
T ss_dssp             TTTTEEEEEETTT
T ss_pred             cCCCeEEEEECCC
Confidence            5567788777754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.24  E-value=0.0015  Score=54.41  Aligned_cols=204  Identities=8%  Similarity=-0.014  Sum_probs=119.7

Q ss_pred             eeeEEeccCCCEEEEec-CCCcEEEEeCCCCceeEE-ccC----CC--CCeEEEEE---cCCCCEEEEEe----------
Q 035621           86 VAPLATTADGSYLFTGG-LSGNVYAISVPKGDILRS-FSA----HD--KPVSCLKI---SPDGSLLISGG----------  144 (387)
Q Consensus        86 v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-~~~----~~--~~v~~~~~---~~~~~~l~~~~----------  144 (387)
                      ..+++|.+....+..++ ..++|..||...+..... +..    ..  ..+..|.|   .|+++++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            55788988655666655 789999999875544333 222    11  13579999   68877776543          


Q ss_pred             ---CCCcEEEEeCCcccccCCCCCCCCccceEeee--cc-----------CCCeEEEEEeeCCCCceEEEEeCC-CcEEE
Q 035621          145 ---DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AH-----------NDSVTAITCCIGSFNSIIISCSMD-CTCKF  207 (387)
Q Consensus       145 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~i~~~~~~~~~~~~~l~s~~~d-~~i~i  207 (387)
                         .+..|..||+.-.         .+.+.+....  ..           ......++..++  |+..++++.. +.|..
T Consensus        95 ~~~g~~~v~~~Dl~~~---------~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~--GnaYVt~s~~~~~I~r  163 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLS---------ENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD--GNSYVAFALGMPAIAR  163 (334)
T ss_dssp             CSSSCCEEEEEESSCC---------TTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT--SCEEEEEEESSCEEEE
T ss_pred             ccCCCCEEEEEcCCcC---------CCCCEEEEecCccccccccccccccccCCceeEECCC--CCEEEeCCCCCCeEEE
Confidence               2577899998300         0222322221  11           123667777665  5888888888 88777


Q ss_pred             EeCCCCcEEEEEe--c-----CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEe-ecccccccEEE-
Q 035621          208 WRLLNGTHLSTVT--F-----PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVT-LANRHDGVVVS-  278 (387)
Q Consensus       208 wd~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~-  278 (387)
                      .+.... .+..+.  .     ....+.++++|+|+.|++....|.+..+|+......    ...... -....-..... 
T Consensus       164 V~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~----~v~~~~~G~~~~~~~~dgi  238 (334)
T 2p9w_A          164 VSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW----PEPVKINGDFGTLSGTEKI  238 (334)
T ss_dssp             ECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC----CEECEESSCCCCCTTEEEE
T ss_pred             EeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce----eecccccCCcccccCcccc
Confidence            776533 333222  1     123679999999999999877999999998842110    000100 00001112233 


Q ss_pred             EEEecCCCE-EEEEeCCCcEEEEECCCc
Q 035621          279 VMMMNEGKN-LVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       279 ~~~s~~~~~-l~s~~~dg~i~iwd~~~~  305 (387)
                      +..-.+|+. |++....+.+.+.+.+..
T Consensus       239 lp~~~~G~vllV~~~~~~~~~l~S~DgW  266 (334)
T 2p9w_A          239 VTVPVGNESVLVGARAPYAISFRSWDNW  266 (334)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEECSSTT
T ss_pred             cccccCCEEEEEEcCCCCEEEEECCCCc
Confidence            334457777 555556666666665543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.20  E-value=0.0012  Score=58.56  Aligned_cols=235  Identities=14%  Similarity=0.099  Sum_probs=130.6

Q ss_pred             ccccCC--CcEEEeeCCCCcEEEEeCCCCceeEeccCC---CCCceeEEE-------cCccc--eeeeccccCCCC----
Q 035621            2 LHHLPC--NEVILTSSPEGPITAYNPSSGAILAHFSGS---RSPRRGLTF-------AGKPF--IAASHISPTTGS----   63 (387)
Q Consensus         2 l~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~--~~~~~~~~~~~d----   63 (387)
                      |+|+|.  ++++++-...+.|++.|++++.....+...   ......++|       ++++.  +.+.     ..+    
T Consensus       144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad-----~~~~~~~  218 (496)
T 3kya_A          144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAI-----DYDGKGD  218 (496)
T ss_dssp             EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEE-----CCCTTGG
T ss_pred             EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEe-----CCCCCcc
Confidence            578883  444555444567999998877765544322   234788999       77543  2222     222    


Q ss_pred             --CeEEEEEccC-CCcc-----cccCCCCCeeeEEeccC-CCEEEEecCCCcEEEEeCC-------CCce----------
Q 035621           64 --GSVHLYNLWS-STPL-----HNIPVPEPVAPLATTAD-GSYLFTGGLSGNVYAISVP-------KGDI----------  117 (387)
Q Consensus        64 --~~v~vw~~~~-~~~~-----~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~-------~~~~----------  117 (387)
                        ..|.+++... +...     ..+..-.....++++|+ +.++++-..++.|..+|+.       ++..          
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              2355665333 2221     11211134567889995 4545556677889999987       5543          


Q ss_pred             -eEE-cc-CCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCcccccCCCCCCCCccc--eEeeecc-------------
Q 035621          118 -LRS-FS-AHDKPVSCLKISPDGSLLISG-GDDGVIATVPIFQLVDEHTDDKNPDDLM--LQKFVAH-------------  178 (387)
Q Consensus       118 -~~~-~~-~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~-------------  178 (387)
                       ... +. ........|+|+|++++|+.+ .....|+.++....          ....  ...+.+.             
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~----------~~~~~~~~~~aG~~g~~G~~DG~~~~  368 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI----------KKEFITPYNFVGGYKQSGYRDDVGTE  368 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT----------TTEECCCEEEEEBTTBCCCBCCBGGG
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC----------cceecccEEecCCCCCCcccCCcccc
Confidence             111 11 223456899999999965554 45677887664210          0000  0111110             


Q ss_pred             --CCCeE-EEEEeeC-----CCCceEEEEeCCCcEEEEeCCCCcEEEEEecC-------------------------Cce
Q 035621          179 --NDSVT-AITCCIG-----SFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-------------------------CAI  225 (387)
Q Consensus       179 --~~~i~-~~~~~~~-----~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------------------~~v  225 (387)
                        -.... .+.....     ..+.++++-...+.|+.++ .++. +.++...                         ...
T Consensus       369 a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P  446 (496)
T 3kya_A          369 ARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDV  446 (496)
T ss_dssp             CBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSE
T ss_pred             cccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCC
Confidence              01223 3333310     2346777777788999998 4564 3333210                         236


Q ss_pred             eEEEeCCC-CCeEEEEccCCcEEEEeccc
Q 035621          226 MGLALDPT-ETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       226 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~  253 (387)
                      ..++++++ +.++++=..+..|+.+++..
T Consensus       447 ~gIavd~~~g~lyVaD~~N~rIrki~~~~  475 (496)
T 3kya_A          447 SGLVYDDVKEMFYVHDQVGHTIRTISMEQ  475 (496)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             cEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence            67888886 55555556678888888765

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.18  E-value=0.0024  Score=54.85  Aligned_cols=263  Identities=9%  Similarity=0.059  Sum_probs=161.3

Q ss_pred             CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCC
Q 035621           17 EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGS   96 (387)
Q Consensus        17 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~   96 (387)
                      +..|.|.|+.++..+..-.   -.--+.-.+|...+.+-.     ...++.++|+++...+..+..+++|.--.|-.+. 
T Consensus        47 ~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALr-----ag~~lQiFnle~K~klks~~~~e~VvfWkWis~~-  117 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALK-----AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-  117 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEE-----ETTEEEEEETTTTEEEEEEECSSCCCEEEEEETT-
T ss_pred             CCeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEe-----cCCeEEEEchHHhhhhcceecCCCceEEEecCCC-
Confidence            3468888887755432211   112344556655555543     2689999999999999999988888888887664 


Q ss_pred             EEEEecCCCcEEEEeCCC-CceeEEccCC----CCCeEEEEEcCCCCEEEEEeC-------CCcEEEEeCCcccccCCCC
Q 035621           97 YLFTGGLSGNVYAISVPK-GDILRSFSAH----DKPVSCLKISPDGSLLISGGD-------DGVIATVPIFQLVDEHTDD  164 (387)
Q Consensus        97 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~  164 (387)
                      .|+..+ +..|+-|++.. ..+.+.+..|    ...|..-..+++.++++..+-       .|.+.+|..          
T Consensus       118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~----------  186 (494)
T 1bpo_A          118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV----------  186 (494)
T ss_dssp             EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEES----------
T ss_pred             eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeec----------
Confidence            454443 46799999964 3556666544    345777788899998775442       367888887          


Q ss_pred             CCCCccceEeeeccCCCeEEEEEeeCCC-CceEEEEeCC---CcEEEEeCCCC--------cEEEEEec-----CCceeE
Q 035621          165 KNPDDLMLQKFVAHNDSVTAITCCIGSF-NSIIISCSMD---CTCKFWRLLNG--------THLSTVTF-----PCAIMG  227 (387)
Q Consensus       165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~d---~~i~iwd~~~~--------~~~~~~~~-----~~~v~~  227 (387)
                         .....+.+.+|...-..+.+.-+.. ..+++.+...   +.++|.++...        +....+..     ..-..+
T Consensus       187 ---er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPva  263 (494)
T 1bpo_A          187 ---DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA  263 (494)
T ss_dssp             ---TTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEE
T ss_pred             ---cccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeE
Confidence               3445566677765544443321111 1344444443   78999998543        11111111     345778


Q ss_pred             EEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccE
Q 035621          228 LALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  307 (387)
                      +..++.-..++.-+.-|.+++||+.++....        .- +-....|...+-.....=++.....|.|.--.++....
T Consensus       264 mqvs~kygviyviTK~G~i~lyDleTgt~i~--------~n-rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          264 MQISEKHDVVFLITKYGYIHLYDLETGTCIY--------MN-RISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             EEEETTTTEEEEEETTSEEEEEETTTCCEEE--------EE-ECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             EEecccCCEEEEEecCceEEEEecccceeee--------ee-cccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence            8999999999999999999999999843221        11 12233444444444434444444666666666655555


Q ss_pred             EEEe
Q 035621          308 VMVL  311 (387)
Q Consensus       308 ~~~~  311 (387)
                      +.-+
T Consensus       335 vpyi  338 (494)
T 1bpo_A          335 IPYI  338 (494)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            4433

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.12  E-value=0.00014  Score=68.08  Aligned_cols=224  Identities=12%  Similarity=-0.009  Sum_probs=114.9

Q ss_pred             cccCCCcEEEeeC-CCCcEEEEeCCCCceeEeccCCCCC-ceeEEEcCccceeeeccccCC-CC-----CeEEEEEccCC
Q 035621            3 HHLPCNEVILTSS-PEGPITAYNPSSGAILAHFSGSRSP-RRGLTFAGKPFIAASHISPTT-GS-----GSVHLYNLWSS   74 (387)
Q Consensus         3 ~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~-~d-----~~v~vw~~~~~   74 (387)
                      ++.+++++++.|+ .++.+.+||..+.+....-..+... -.+++..+++.+..    .|+ .+     ..+.+||..++
T Consensus       249 ~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv----~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          249 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT----IGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEE----ECCCCCSSSCCCCEEEEETTTT
T ss_pred             cCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEE----EeCcccCCcccccceEeCCCCC
Confidence            3457899999988 4458999999876544322212221 23344443332221    144 23     57899998776


Q ss_pred             Ccccc-----cCCCCCeeeEEeccCCCEEEEecCCC---------cEEEEeCCCCceeEEccCCC---------CCeEEE
Q 035621           75 TPLHN-----IPVPEPVAPLATTADGSYLFTGGLSG---------NVYAISVPKGDILRSFSAHD---------KPVSCL  131 (387)
Q Consensus        75 ~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~---------~~v~~~  131 (387)
                      +....     ......-....+..++...+.|+.+|         .+..||..+.........+.         ..-.++
T Consensus       325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av  404 (656)
T 1k3i_A          325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV  404 (656)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred             cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence            43221     00001111122334555555555443         46788887765433222111         122444


Q ss_pred             EEcC-CCCEEEEEeCCC-----------cEEEEeCCcccccCCCCCCCCccceEeeeccCCCe-EEEEEeeCCCCceEEE
Q 035621          132 KISP-DGSLLISGGDDG-----------VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV-TAITCCIGSFNSIIIS  198 (387)
Q Consensus       132 ~~~~-~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~l~s  198 (387)
                      .|.. ++++++.|+.++           .+.+||....          ....+..-..+.... .+.+..++  +++++.
T Consensus       405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~----------~W~~~~~~~mp~~R~~~~~~~l~~--g~i~v~  472 (656)
T 1k3i_A          405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS----------PNTVFASNGLYFARTFHTSVVLPD--GSTFIT  472 (656)
T ss_dssp             EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC----------CEEEECTTCCSSCCBSCEEEECTT--SCEEEE
T ss_pred             eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC----------CeeEEccCCCCCCcccCCeEECCC--CCEEEE
Confidence            5543 677888887543           5666766221          000110000111111 23334445  488888


Q ss_pred             EeCC-----------CcEEEEeCCCCcEEEE--EecCC-ceeEEEeCCCCCeEEEEcc
Q 035621          199 CSMD-----------CTCKFWRLLNGTHLST--VTFPC-AIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       199 ~~~d-----------~~i~iwd~~~~~~~~~--~~~~~-~v~~~~~~~~~~~l~~~~~  242 (387)
                      |+.+           ..+.+||..+.+-...  ...+. ......+.|+++.++.|+.
T Consensus       473 GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          473 GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            8754           4689999877643221  11222 2234556799999999885

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.06  E-value=0.00013  Score=68.56  Aligned_cols=200  Identities=8%  Similarity=-0.019  Sum_probs=113.2

Q ss_pred             ccccCCCcEEE-eeCCCCcEEEEeCCC----CceeEeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCCC
Q 035621            2 LHHLPCNEVIL-TSSPEGPITAYNPSS----GAILAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSST   75 (387)
Q Consensus         2 l~~s~~~~~l~-~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~~   75 (387)
                      |+|++.+..|+ +-...+.|+.+++..    ......+.........|++.+ .+.+    +++-...+.|.++++....
T Consensus       411 la~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~L----Y~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          411 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNI----YWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             CEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBC----EECCTTTSCEEEEBSSSCC
T ss_pred             EccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcE----EEEeccCCeEEEEecCCCc
Confidence            46777554444 444567888888764    222222222222356677764 2211    1223456789999986554


Q ss_pred             cccccCC-CCCeeeEEeccCCCEEEEecC--CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEE-eCCCcEEE
Q 035621           76 PLHNIPV-PEPVAPLATTADGSYLFTGGL--SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISG-GDDGVIAT  151 (387)
Q Consensus        76 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i  151 (387)
                      ....+.. ......+++.|.+.+|+....  .+.|..+++........+...-...+.|+|+|++..|+.+ ...+.|..
T Consensus       487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~  566 (699)
T 1n7d_A          487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  566 (699)
T ss_dssp             EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEE
Confidence            3333332 245688999997666665543  2678888875433222222223456789999976555444 45678988


Q ss_pred             EeCCcccccCCCCCCCCccceEeee---ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec
Q 035621          152 VPIFQLVDEHTDDKNPDDLMLQKFV---AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF  221 (387)
Q Consensus       152 wd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  221 (387)
                      +++..             .....+.   ........|++..   +.++++....+.|..+|..+++.+..+..
T Consensus       567 ~d~dG-------------~~~~~~~~~~~~~~~P~glavd~---~~lywtd~~~~~V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          567 IDVNG-------------GNRKTILEDEKRLAHPFSLAVFE---DKVFWTDIINEAIFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             ECSSS-------------SCCEEECCCSSSCSSCCCCEEET---TEEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred             EccCC-------------CceEEEEecCCcCCCceEeEEEC---CEEEEEeCCCCeEEEEEccCCCceEEeec
Confidence            88731             1111111   1112223444432   25666776778999999888887776653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.03  E-value=0.0086  Score=55.38  Aligned_cols=196  Identities=8%  Similarity=-0.049  Sum_probs=107.8

Q ss_pred             ccccCCCcEE-EeeCCCCcEEEEeCCCCce-eEeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            2 LHHLPCNEVI-LTSSPEGPITAYNPSSGAI-LAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         2 l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      ++|++.++.| ++=...+.|..+++..... ...+.........+++.+ .+.+..    +-...+.|.+.+++......
T Consensus        45 ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~----~d~~~~~I~v~~~dG~~~~~  120 (619)
T 3s94_A           45 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYW----TDSETNRIEVSNLDGSLRKV  120 (619)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEE----EETTTTEEEEEETTSCSCEE
T ss_pred             EEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEE----EeCCCCEEEEEECCCCCEEE
Confidence            4566654444 4444556777777754422 222333334578888886 222222    13567899999986544322


Q ss_pred             cc-CCCCCeeeEEeccCCCEEEEecC--CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 035621           79 NI-PVPEPVAPLATTADGSYLFTGGL--SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG-DDGVIATVPI  154 (387)
Q Consensus        79 ~~-~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~  154 (387)
                      .+ ..-.....+++.|.+.+|+....  .+.|...++............-...+.|++++++..|+.+. ..+.|...|+
T Consensus       121 l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~  200 (619)
T 3s94_A          121 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  200 (619)
T ss_dssp             EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESS
T ss_pred             EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecC
Confidence            22 23356789999997666666543  46777777754433333333345679999999766666554 5567888887


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL  216 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  216 (387)
                      ...            ...............+++..+   .++++-...+.|...|..+++..
T Consensus       201 dG~------------~~~~~~~~~~~~P~gi~~~~~---~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          201 DGT------------NRQAVVKGSLPHPFALTLFED---ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             SCC------------EEC---------CCCEEESSS---EEEEECTTTCSEEEEESSSCCCC
T ss_pred             CCC------------ccEEEEeCCCCCceEEEEeCC---EEEEecCCCCEEEEEECCCCccc
Confidence            321            010001101111234554322   45555556778888887776543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=0.0022  Score=56.92  Aligned_cols=215  Identities=11%  Similarity=0.020  Sum_probs=120.5

Q ss_pred             CeeeEEecc-CCCEEEEecC-CCcEEEEeCCCCceeEEccCC---CCCeEEEEE-------cCCCCEEEEEeCCC-c---
Q 035621           85 PVAPLATTA-DGSYLFTGGL-SGNVYAISVPKGDILRSFSAH---DKPVSCLKI-------SPDGSLLISGGDDG-V---  148 (387)
Q Consensus        85 ~v~~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~dg-~---  148 (387)
                      ....|+|.| ++..|+++.. .+.|++.|++++.........   ......++|       ++++++|+++...+ .   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            466889998 3555555543 467999998877765544321   235899999       99999777766554 2   


Q ss_pred             ---EEEEeCCcccccCCCCCCCCc-cceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC-------CCcE--
Q 035621          149 ---IATVPIFQLVDEHTDDKNPDD-LMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL-------NGTH--  215 (387)
Q Consensus       149 ---i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-------~~~~--  215 (387)
                         |.+++....  .   .  ... .....+... .....++++|+. +.++++-..++.|..+|+.       ++..  
T Consensus       220 ~~~V~~i~r~~~--G---~--~~~~~~~~~v~~~-~~p~giavdp~~-g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t  290 (496)
T 3kya_A          220 SPSVYIIKRNAD--G---T--FDDRSDIQLIAAY-KQCNGATIHPIN-GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD  290 (496)
T ss_dssp             EEEEEEEECCTT--S---C--CSTTSCEEEEEEE-SCCCCEEECTTT-CCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred             CceEEEEecCCC--C---c--eeecccceeeccC-CCceEEEEcCCC-CeEEEEECCCCEEEEEecccccccccCceeec
Confidence               555543110  0   0  000 000111111 223466777753 4667777788899999987       5543  


Q ss_pred             ---------EEE-Ee--cCCceeEEEeCCCCCeEEEE-ccCCcEEEEeccccccccccccceeEee-----------ccc
Q 035621          216 ---------LST-VT--FPCAIMGLALDPTETDFFAA-GSDGLIYKGLLKYQSRQQMHKGQELVTL-----------ANR  271 (387)
Q Consensus       216 ---------~~~-~~--~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----------~~~  271 (387)
                               ... +.  .......++|+|+|+.|+.+ .....|+.++......... ....+...           ...
T Consensus       291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~-~~~~~aG~~g~~G~~DG~~~~a  369 (496)
T 3kya_A          291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI-TPYNFVGGYKQSGYRDDVGTEA  369 (496)
T ss_dssp             CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC-CCEEEEEBTTBCCCBCCBGGGC
T ss_pred             ccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceec-ccEEecCCCCCCcccCCccccc
Confidence                     122 22  23456899999999965555 5578898877643211000 00000000           001


Q ss_pred             ccccEE-EEEEe-------cCCCEEEEEeCCCcEEEEECCCccEEEEe
Q 035621          272 HDGVVV-SVMMM-------NEGKNLVSAAEDGSVYIWEIEKRQVVMVL  311 (387)
Q Consensus       272 ~~~~v~-~~~~s-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (387)
                      .-.... .++..       +++.++++=.....|+.++ .+|. +.++
T Consensus       370 ~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~Ti  415 (496)
T 3kya_A          370 RMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTY  415 (496)
T ss_dssp             BCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEE
T ss_pred             ccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEE
Confidence            112344 45554       4566666666778899988 4564 3344

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.96  E-value=0.014  Score=55.53  Aligned_cols=216  Identities=11%  Similarity=-0.039  Sum_probs=126.5

Q ss_pred             CcEEEEeCCCCceeEeccCCCCCceeEEEcC-ccceeeeccccCCCCCeEEEEEccCC----CcccccC-CCCCeeeEEe
Q 035621           18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSS----TPLHNIP-VPEPVAPLAT   91 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~----~~~~~~~-~~~~v~~~~~   91 (387)
                      ..|+..++........+. ....+.+++|.+ +..+..+    -...+.|+.+++...    .....+. .......|++
T Consensus       404 ~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~s----D~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv  478 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWS----DLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  478 (791)
T ss_dssp             SSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEE----ETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             cceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEe----eccceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence            567888876555443333 344577888886 2222221    345678888888653    2222222 2345778999


Q ss_pred             ccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCcccccCCCCCCCC
Q 035621           92 TADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD--DGVIATVPIFQLVDEHTDDKNPD  168 (387)
Q Consensus        92 ~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~  168 (387)
                      .+.++.|+.+ ...+.|.+.++........+.........|+++|.+.+|+.+..  .+.|...++             .
T Consensus       479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~-------------d  545 (791)
T 3m0c_C          479 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL-------------N  545 (791)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET-------------T
T ss_pred             eecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec-------------C
Confidence            9877655554 46679999998755443334334456899999997666666553  267887777             2


Q ss_pred             ccceEee-eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCCCeEEEE-ccC
Q 035621          169 DLMLQKF-VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTETDFFAA-GSD  243 (387)
Q Consensus       169 ~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~-~~d  243 (387)
                      +.....+ ...-.....|++.+.. +.++++-...+.|..+++........+..   -.....|++.  +..|+.+ ...
T Consensus       546 G~~~~~lv~~~l~~P~GLavD~~~-~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~  622 (791)
T 3m0c_C          546 GVDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN  622 (791)
T ss_dssp             SCCEEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred             CCceEEEEeCCCCCceEEEEecCC-CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCC
Confidence            2222222 2233567889988764 35555555567899999865444333332   1234566663  3344444 456


Q ss_pred             CcEEEEecccc
Q 035621          244 GLIYKGLLKYQ  254 (387)
Q Consensus       244 g~i~i~d~~~~  254 (387)
                      +.|...+..++
T Consensus       623 ~~I~~~dk~tG  633 (791)
T 3m0c_C          623 EAIFSANRLTG  633 (791)
T ss_dssp             TEEEEEETTTC
T ss_pred             CEEEEEeCCCC
Confidence            77777775543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.86  E-value=0.0036  Score=52.09  Aligned_cols=165  Identities=7%  Similarity=0.041  Sum_probs=105.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceE-eeec----cCC--CeEEEEE---eeCC
Q 035621          123 AHDKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQ-KFVA----HND--SVTAITC---CIGS  191 (387)
Q Consensus       123 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~----~~~--~i~~~~~---~~~~  191 (387)
                      ......-+++|++....+..++ ..+.|..||...            ..... .+..    ...  .+..+.+   .|. 
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~------------~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-   76 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKT------------QSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-   76 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTT------------CCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCC------------CeEEEEecCCccccCCCcceeeEEEEeccCCC-
Confidence            3344456789988555555555 789999998831            11111 1111    111  2467777   344 


Q ss_pred             CCceEEEEe-------------CCCcEEEEeCC---CCcEEEEEecC--------------CceeEEEeCCCCCeEEEEc
Q 035621          192 FNSIIISCS-------------MDCTCKFWRLL---NGTHLSTVTFP--------------CAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       192 ~~~~l~s~~-------------~d~~i~iwd~~---~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~  241 (387)
                       ++++++..             .+..|..||+.   +++.+......              .....++..++|+..++++
T Consensus        77 -grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s  155 (334)
T 2p9w_A           77 -KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA  155 (334)
T ss_dssp             -CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE
T ss_pred             -CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC
Confidence             46776543             26779999999   88877766521              2488999999999999988


Q ss_pred             cC-CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621          242 SD-GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       242 ~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  305 (387)
                      .. +.|...+.........    .............+.|+++|+|+.|++....|.|..+|+...
T Consensus       156 ~~~~~I~rV~pdG~~~~~~----~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          156 LGMPAIARVSADGKTVSTF----AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             ESSCEEEEECTTSCCEEEE----EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             CCCCeEEEEeCCCCEEeee----eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            88 8887777654211100    000000112234679999999998888877999999998853

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.81  E-value=0.0015  Score=55.05  Aligned_cols=114  Identities=17%  Similarity=0.351  Sum_probs=71.6

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCC-CCCceeEEEcCccceeeecccc-CCCCCeEEEEEccCCCcccccCCCCCe
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGS-RSPRRGLTFAGKPFIAASHISP-TTGSGSVHLYNLWSSTPLHNIPVPEPV   86 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~-~~~d~~v~vw~~~~~~~~~~~~~~~~v   86 (387)
                      .+++.++.||.|+-.|.++|+...+++.. ..++.... .+........++. ...||.+..++..+|.....+..+..+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~-~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ-EPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC-CSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec-CCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            47888899999999999999999888654 12222111 0100000011111 258999999998887544333322111


Q ss_pred             e--eEEec-----------cCCCEEEEecCCCcEEEEeCCCCceeEEccC
Q 035621           87 A--PLATT-----------ADGSYLFTGGLSGNVYAISVPKGDILRSFSA  123 (387)
Q Consensus        87 ~--~~~~~-----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  123 (387)
                      .  -+...           ..+..+++|+.+|.+...|+.+|+.+..+..
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            1  11211           1456789999999999999999999988863

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.70  E-value=0.0043  Score=52.75  Aligned_cols=200  Identities=16%  Similarity=0.178  Sum_probs=110.0

Q ss_pred             cccCCCcEEEeeC------------CCCcEEEEeCCC--CceeEec--cC-----CCCCceeEEEcCc--c---ceeeec
Q 035621            3 HHLPCNEVILTSS------------PEGPITAYNPSS--GAILAHF--SG-----SRSPRRGLTFAGK--P---FIAASH   56 (387)
Q Consensus         3 ~~s~~~~~l~~~~------------~dg~i~iwd~~~--~~~~~~~--~~-----~~~~v~~~~~~~~--~---~~~~~~   56 (387)
                      ...|+|..+++++            .+|.|.++|+++  ++. ..+  .+     .......+.+.++  +   .+..+.
T Consensus        56 ~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh  134 (355)
T 3sre_A           56 EILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH  134 (355)
T ss_dssp             EECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred             EEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEEC
Confidence            4567776666552            689999999873  222 222  22     1234666766442  2   223222


Q ss_pred             cccCCCCCeEEEEEccCCCc----ccccCCC--CCeeeEEeccCCCEEEEec-----------------CCCcEEEEeCC
Q 035621           57 ISPTTGSGSVHLYNLWSSTP----LHNIPVP--EPVAPLATTADGSYLFTGG-----------------LSGNVYAISVP  113 (387)
Q Consensus        57 ~~~~~~d~~v~vw~~~~~~~----~~~~~~~--~~v~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~  113 (387)
                         ...+.++.+|+++....    +..+.+.  ...+.+.+.++|.+.++..                 ..|.|..+|. 
T Consensus       135 ---~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-  210 (355)
T 3sre_A          135 ---PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  210 (355)
T ss_dssp             ---STTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred             ---CCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence               22467888888765422    2223322  4678999999998777653                 1245666654 


Q ss_pred             CCceeEEccCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCC
Q 035621          114 KGDILRSFSAHDKPVSCLKISPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF  192 (387)
Q Consensus       114 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  192 (387)
                       ++. ..+...-...+.++|+||++.|+.+. ..+.|..|++...         ........+ ...+....+++.++ +
T Consensus       211 -~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~---------g~l~~~~~~-~~~g~PDGi~vD~e-~  277 (355)
T 3sre_A          211 -NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN---------WTLTPLRVL-SFDTLVDNISVDPV-T  277 (355)
T ss_dssp             -TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT---------SCEEEEEEE-ECSSEEEEEEECTT-T
T ss_pred             -CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC---------CcEecCEEE-eCCCCCceEEEeCC-C
Confidence             332 22222234578999999998777665 5688999988321         011111222 22345566776652 1


Q ss_pred             CceEEEEeCC-CcEEEEeCC--CCcEEEEEe
Q 035621          193 NSIIISCSMD-CTCKFWRLL--NGTHLSTVT  220 (387)
Q Consensus       193 ~~~l~s~~~d-~~i~iwd~~--~~~~~~~~~  220 (387)
                      |++.+++..+ +.|..|+..  .+..+..+.
T Consensus       278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            4676666544 344445543  244455554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.67  E-value=0.021  Score=48.78  Aligned_cols=236  Identities=13%  Similarity=0.084  Sum_probs=119.0

Q ss_pred             CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc--ccccC----CCCCeeeEEeccC---CCEEEEecCC-----
Q 035621           39 SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP--LHNIP----VPEPVAPLATTAD---GSYLFTGGLS-----  104 (387)
Q Consensus        39 ~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~--~~~~~----~~~~v~~~~~~~~---~~~l~~~~~d-----  104 (387)
                      .....++|.|++.+...     ...|.|.+++  +++.  +..+.    .......++++|+   +..|+++...     
T Consensus        31 ~~P~~ia~~pdG~l~V~-----e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~  103 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-----ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL  103 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-----ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred             CCceEEEEcCCCeEEEE-----eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence            34679999997654432     3458899888  3432  11111    2356889999998   5566555432     


Q ss_pred             -CcEEEEeCCCCc-----e-eEEcc---CCCCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCcccccC
Q 035621          105 -GNVYAISVPKGD-----I-LRSFS---AHDKPVSCLKISPDGSLLISGGDD-------------GVIATVPIFQLVDEH  161 (387)
Q Consensus       105 -g~i~i~d~~~~~-----~-~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~~  161 (387)
                       +.|..++...+.     . +..+.   ........++|.|+|.+.++.+..             |.|.-++.....   
T Consensus       104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~---  180 (352)
T 2ism_A          104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP---  180 (352)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB---
T ss_pred             ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC---
Confidence             568888876432     1 12232   111234689999999766664322             445444442100   


Q ss_pred             CCCCCC------CccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcE------EEEeCCCCc---------------
Q 035621          162 TDDKNP------DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC------KFWRLLNGT---------------  214 (387)
Q Consensus       162 ~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i------~iwd~~~~~---------------  214 (387)
                       ...++      ....+. ..++. ....++|.|.. +.++++-.....+      .+.-+..+.               
T Consensus       181 -p~~npf~~~~~~~~~i~-a~G~r-np~g~a~d~~~-g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~  256 (352)
T 2ism_A          181 -APGNPFLGRRGARPEVY-SLGHR-NPQGLAWHPKT-GELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPR  256 (352)
T ss_dssp             -CTTCTTTTCTTSCTTEE-EECCS-EECCCEECTTT-CCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTT
T ss_pred             -CCCCcccCCCCCCccEE-EEcCC-CcccEEEECCC-CCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCC
Confidence             00000      011111 11222 24567777732 3554443332221      122222221               


Q ss_pred             ---EEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621          215 ---HLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA  291 (387)
Q Consensus       215 ---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  291 (387)
                         ++..+........++| .+|..+++.-..+.|...++........  ......++ .....+..+++.|||.++++.
T Consensus       257 ~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~--~~~~~~~~-~~~~rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          257 YRDPLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWR--VLRVETAL-SGFGRLREVQVGPDGALYVTT  332 (352)
T ss_dssp             SCCCSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEE--EEEEEEEE-ESSCCEEEEEECTTSCEEEEE
T ss_pred             CcCCeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCccee--ecchheec-ccCCCeeEEEECCCCcEEEEE
Confidence               2222222334567777 4566666555667787777764321100  00011122 223578999999999877665


Q ss_pred             e
Q 035621          292 A  292 (387)
Q Consensus       292 ~  292 (387)
                      .
T Consensus       333 ~  333 (352)
T 2ism_A          333 S  333 (352)
T ss_dssp             C
T ss_pred             e
Confidence            3

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.66  E-value=0.021  Score=48.72  Aligned_cols=232  Identities=13%  Similarity=0.099  Sum_probs=116.2

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCce--eEecc---CCCCCceeEEEcCc-----cceeeeccccCCCCCeEEEEEc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAI--LAHFS---GSRSPRRGLTFAGK-----PFIAASHISPTTGSGSVHLYNL   71 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~-----~~~~~~~~~~~~~d~~v~vw~~   71 (387)
                      ++|.|+|+++++- .+|.|++++  +++.  +..+.   ........++++|+     ..+.+..-......+.|..++.
T Consensus        36 ia~~pdG~l~V~e-~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~  112 (352)
T 2ism_A           36 LAFLPDGGMLIAE-RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRH  112 (352)
T ss_dssp             EEECTTSCEEEEE-TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEE
T ss_pred             EEEcCCCeEEEEe-CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEe
Confidence            5789999866664 459999998  3432  22221   22345789999996     3333221000000156777777


Q ss_pred             cCCC-----cc-cccCC----CCCeeeEEeccCCCEEEEecC-------------CCcEEEEeCCCC------------c
Q 035621           72 WSST-----PL-HNIPV----PEPVAPLATTADGSYLFTGGL-------------SGNVYAISVPKG------------D  116 (387)
Q Consensus        72 ~~~~-----~~-~~~~~----~~~v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~------------~  116 (387)
                      ..+.     .+ ..+..    ......++|.|+|.+.++.+.             .|.|.-++....            .
T Consensus       113 ~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~  192 (352)
T 2ism_A          113 LGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGA  192 (352)
T ss_dssp             CSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTS
T ss_pred             CCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCC
Confidence            6431     11 11221    123468999999976665432             145666665420            0


Q ss_pred             eeEEc-cCCCCCeEEEEEcC-CCCEEEEEeCCCc--------EEEEeCCcc--cccCCCCC--CCCccceEeeeccCCCe
Q 035621          117 ILRSF-SAHDKPVSCLKISP-DGSLLISGGDDGV--------IATVPIFQL--VDEHTDDK--NPDDLMLQKFVAHNDSV  182 (387)
Q Consensus       117 ~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~--------i~iwd~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~i  182 (387)
                      ....+ .++ .....++|+| +++++++-.....        |.+..-...  +.......  .....+...+..| ...
T Consensus       193 ~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-~ap  270 (352)
T 2ism_A          193 RPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG-FPP  270 (352)
T ss_dssp             CTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC-CCE
T ss_pred             CccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC-CCC
Confidence            00111 122 2356789999 5664444332222        332211100  00000000  0011233333222 345


Q ss_pred             EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE------EEEE-ecCCceeEEEeCCCCCeEEEEc
Q 035621          183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH------LSTV-TFPCAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~-~~~~~v~~~~~~~~~~~l~~~~  241 (387)
                      ..+++ ..  +.++++.-..+.|...++.....      ...+ .....+..+++.|||.++++..
T Consensus       271 ~G~~~-~~--G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          271 GNLAF-FR--GDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEEEE-ET--TEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             cceEE-EC--CEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            66777 33  46666666677788877764321      1122 2345788999999987666654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.61  E-value=0.043  Score=50.83  Aligned_cols=224  Identities=9%  Similarity=-0.034  Sum_probs=135.3

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEecc-CCCCCceeEEEcCc-cceeeeccccCCCCCeEEEEEccCCCcccccCCC-CCe
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHFS-GSRSPRRGLTFAGK-PFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-EPV   86 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-~~v   86 (387)
                      +|+.+ ....|+..++.+......+. ..-..+.+++|++. ..+..+    -..++.|..+++........+... ...
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywt----D~~~~~I~r~~~~g~~~~~v~~~g~~~P   82 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWT----DISLKTISRAFMNGSALEHVVEFGLDYP   82 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEE----ETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEE----ECCCCeEEEEECCCCCcEEEEeCCCCCc
Confidence            44444 34679999998665433332 12345778999873 222222    345788988888655433333322 457


Q ss_pred             eeEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCcccccCCC
Q 035621           87 APLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD--DGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        87 ~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~  163 (387)
                      ..+++.+.+..|+.+ ...+.|.+.++........+...-.....|++.|....|+....  .+.|...++.        
T Consensus        83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--------  154 (628)
T 4a0p_A           83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--------  154 (628)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--------
T ss_pred             ceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--------
Confidence            789998866655544 45678999998654433333234456799999996556665553  4667777662        


Q ss_pred             CCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEcc
Q 035621          164 DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~  242 (387)
                           +.....+...-.....|++.+.. +.+.++-...+.|..+|+..... ..+. .......+++.. +..+++-..
T Consensus       155 -----G~~~~~l~~~~~~P~GlalD~~~-~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~  226 (628)
T 4a0p_A          155 -----GSERTTLVPNVGRANGLTIDYAK-RRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWS  226 (628)
T ss_dssp             -----SCSCEEEECSCSSEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETT
T ss_pred             -----CCceEEEECCCCCcceEEEcccc-CEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCC
Confidence                 22222222344567789998864 35555556678899999875443 2232 334456777765 344444445


Q ss_pred             CCcEEEEecccc
Q 035621          243 DGLIYKGLLKYQ  254 (387)
Q Consensus       243 dg~i~i~d~~~~  254 (387)
                      .+.|...|..++
T Consensus       227 ~~~I~~~dk~tg  238 (628)
T 4a0p_A          227 RRSIERANKTSG  238 (628)
T ss_dssp             TTEEEEEETTTC
T ss_pred             CCEEEEEECCCC
Confidence            788888886554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.60  E-value=0.0075  Score=59.84  Aligned_cols=216  Identities=9%  Similarity=0.034  Sum_probs=132.7

Q ss_pred             CcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCE
Q 035621           18 GPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSY   97 (387)
Q Consensus        18 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~   97 (387)
                      .+|.|.|+.++..+..-+   -.--+.-.+|...+.+-.     ...++.++|+++...+..+..+++|.--.|-.+.. 
T Consensus        48 ~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALr-----ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~-  118 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALK-----AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-  118 (1630)
T ss_pred             ceEEEEECCCCCCccccc---ccchhhccCCCcceEEEe-----cCCeEEEeehHHhhhhcccccCCCceEEEecCCCe-
Confidence            467777777655432111   112233456655555432     36789999999999999999888888888876544 


Q ss_pred             EEEecCCCcEEEEeCCC-CceeEEccCC----CCCeEEEEEcCCCCEEEEEe-------CCCcEEEEeCCcccccCCCCC
Q 035621           98 LFTGGLSGNVYAISVPK-GDILRSFSAH----DKPVSCLKISPDGSLLISGG-------DDGVIATVPIFQLVDEHTDDK  165 (387)
Q Consensus        98 l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~  165 (387)
                      |+..+ +..|+-|++.. ..+.+.+..|    ...|..-..+++.++++..+       -.|.+.+|...          
T Consensus       119 l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e----------  187 (1630)
T 1xi4_A          119 VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD----------  187 (1630)
T ss_pred             eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc----------
Confidence            44433 45699999964 3444445444    35677777888888877544       34778888773          


Q ss_pred             CCCccceEeeeccCCCeEEEEEeeCCC-CceEEEEeC---CCcEEEEeCCCC---cE-E----EEEe-----cCCceeEE
Q 035621          166 NPDDLMLQKFVAHNDSVTAITCCIGSF-NSIIISCSM---DCTCKFWRLLNG---TH-L----STVT-----FPCAIMGL  228 (387)
Q Consensus       166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~---d~~i~iwd~~~~---~~-~----~~~~-----~~~~v~~~  228 (387)
                         ....+.+.+|...-..+...-... ..+++.+..   .+.++|.++...   .+ .    ..+.     ......++
T Consensus       188 ---r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~  264 (1630)
T 1xi4_A          188 ---RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAM  264 (1630)
T ss_pred             ---cccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEE
Confidence               223344455554433333221111 123332222   268999888543   11 1    1111     12346678


Q ss_pred             EeCCCCCeEEEEccCCcEEEEecccccc
Q 035621          229 ALDPTETDFFAAGSDGLIYKGLLKYQSR  256 (387)
Q Consensus       229 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~  256 (387)
                      ..++.-..++.-+.-|.|+++|+.++..
T Consensus       265 ~vs~k~g~iy~itk~G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          265 QISEKHDVVFLITKYGYIHLYDLETGTC  292 (1630)
T ss_pred             EeccccCEEEEEecCceEEEEecccchh
Confidence            8888888999999999999999998653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.56  E-value=0.021  Score=47.44  Aligned_cols=218  Identities=12%  Similarity=0.092  Sum_probs=107.1

Q ss_pred             CeEEEEEccCCCcccccCCCCC-eeeEEeccCCCEEEEecCC-----CcEEEEeCCCCc---eeE--EccCCCCCeEEEE
Q 035621           64 GSVHLYNLWSSTPLHNIPVPEP-VAPLATTADGSYLFTGGLS-----GNVYAISVPKGD---ILR--SFSAHDKPVSCLK  132 (387)
Q Consensus        64 ~~v~vw~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~---~~~--~~~~~~~~v~~~~  132 (387)
                      ..+.+||..+++-...-..+.+ ....+...++..++.|+.+     ..+.+||+.+.+   -..  .+.........+.
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~  110 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT  110 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence            3567777766542221111111 1122223356777777754     368999988766   222  2222222222333


Q ss_pred             EcCCCCEEEEEeCCC-----cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-----
Q 035621          133 ISPDGSLLISGGDDG-----VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-----  202 (387)
Q Consensus       133 ~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-----  202 (387)
                      +  ++++++.|+.++     .+.+||+...          ....+..+......- +++. .+  +.+++.|+.+     
T Consensus       111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~----------~W~~~~~~p~~r~~~-~~~~-~~--~~iyv~GG~~~~~~~  174 (301)
T 2vpj_A          111 L--GDMIYVSGGFDGSRRHTSMERYDPNID----------QWSMLGDMQTAREGA-GLVV-AS--GVIYCLGGYDGLNIL  174 (301)
T ss_dssp             E--TTEEEEECCBCSSCBCCEEEEEETTTT----------EEEEEEECSSCCBSC-EEEE-ET--TEEEEECCBCSSCBC
T ss_pred             E--CCEEEEEcccCCCcccceEEEEcCCCC----------eEEECCCCCCCcccc-eEEE-EC--CEEEEECCCCCCccc
Confidence            3  567777776543     5777877321          111111111111111 1222 23  4677777654     


Q ss_pred             CcEEEEeCCCCcEEEEEec--CCceeEEEeCCCCCeEEEEccC-----CcEEEEeccccccccccccceeEeeccccccc
Q 035621          203 CTCKFWRLLNGTHLSTVTF--PCAIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLANRHDGV  275 (387)
Q Consensus       203 ~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  275 (387)
                      ..+.+||+.+.+-...-..  +..-.+++. -+++.++.|+.+     ..+.+||+.+.........      . .....
T Consensus       175 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~------p-~~r~~  246 (301)
T 2vpj_A          175 NSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM------T-TPRCY  246 (301)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC------S-SCCBS
T ss_pred             ceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC------C-Ccccc
Confidence            4588999887653322111  111112222 256667777653     4688999877543322111      0 11111


Q ss_pred             EEEEEEecCCCEEEEEeCC-----CcEEEEECCCccE
Q 035621          276 VVSVMMMNEGKNLVSAAED-----GSVYIWEIEKRQV  307 (387)
Q Consensus       276 v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~  307 (387)
                      ...+.  -++++++.|+.+     ..+.+||+++.+-
T Consensus       247 ~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          247 VGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             CEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             eeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence            12222  267777888765     3578888877643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.47  E-value=0.11  Score=51.83  Aligned_cols=129  Identities=9%  Similarity=0.093  Sum_probs=80.4

Q ss_pred             cEEEEeCCCCceeEeccCCC-CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc--ccccCCCCCeeeEEeccC-
Q 035621           19 PITAYNPSSGAILAHFSGSR-SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP--LHNIPVPEPVAPLATTAD-   94 (387)
Q Consensus        19 ~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~--~~~~~~~~~v~~~~~~~~-   94 (387)
                      .|++.+...+..+..+.... ..|...+.+....+.      + .++.+.++.+..++.  ......+..|.|+++.|. 
T Consensus       493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvv------a-~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~  565 (1158)
T 3ei3_A          493 SVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVV------A-VGRALYYLQIHPQELRQISHTEMEHEVACLDITPLG  565 (1158)
T ss_dssp             CEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEE------E-ETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCS
T ss_pred             EEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEE------E-ECCEEEEEEeeCCceeeecccCCCCceEEEEeecCC
Confidence            35666655455565565332 346666665532222      2 246788888766532  223335678999999863 


Q ss_pred             -----CCEEEEecC-CCcEEEEeCCCCceeEEccC-CCCCeEEEEEcC--CCCEEEEEeCCCcEEEEeC
Q 035621           95 -----GSYLFTGGL-SGNVYAISVPKGDILRSFSA-HDKPVSCLKISP--DGSLLISGGDDGVIATVPI  154 (387)
Q Consensus        95 -----~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~  154 (387)
                           ++++++|.. |++++++++.+.+.+....- ......++.+..  ...+|..|-.||.+.-+.+
T Consensus       566 ~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~  634 (1158)
T 3ei3_A          566 DSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGL  634 (1158)
T ss_dssp             SSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred             CCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence                 468999986 99999999988776544321 122344444432  3357889999999876655

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.46  E-value=0.015  Score=57.86  Aligned_cols=236  Identities=12%  Similarity=0.127  Sum_probs=138.2

Q ss_pred             ccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC-CCcccccCC
Q 035621            4 HLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS-STPLHNIPV   82 (387)
Q Consensus         4 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~-~~~~~~~~~   82 (387)
                      .+|..+.+|.-. ..++.|+|+++.+.+..+.- ..+|.--.|-....+..      -.+..|.-|++.. ..+.+.+..
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~l------VT~~aVyHW~~~~~s~P~k~fdR  144 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVAL------VTDNAVYHWSMEGESQPVKMFDR  144 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEE------EcCCeEEEeccCCCCccHHHHhc
Confidence            367777777765 57899999998888777653 34566667765433322      1467899999964 345555542


Q ss_pred             -----CCCeeeEEeccCCCEEEEec-------CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC--C-CCEEEEEeC--
Q 035621           83 -----PEPVAPLATTADGSYLFTGG-------LSGNVYAISVPKGDILRSFSAHDKPVSCLKISP--D-GSLLISGGD--  145 (387)
Q Consensus        83 -----~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~l~~~~~--  145 (387)
                           ...|..-..+++.++++..|       -.|.+.+|..+.+ ..+.+.+|.+....+....  . ...++.+..  
T Consensus       145 ~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~  223 (1630)
T 1xi4_A          145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ  223 (1630)
T ss_pred             chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecC
Confidence                 24577777788888877543       3478899987543 3455667765554444421  1 123332222  


Q ss_pred             -CCcEEEEeCCcccccCCCCCCCCccceEeeec---cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 035621          146 -DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA---HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-  220 (387)
Q Consensus       146 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-  220 (387)
                       .+.+.+-++........  . -..+.+..+..   ..+--.++..++..  ..+..-+.-|.|.+||+.++.++..-+ 
T Consensus       224 ~g~kLhi~Ei~~~~~~~~--~-f~kk~~~~~~~~~~~~Dfpv~~~vs~k~--g~iy~itk~G~~~~~d~~t~~~i~~~ri  298 (1630)
T 1xi4_A          224 AGGKLHIIEVGTPPTGNQ--P-FPKKAVDVFFPPEAQNDFPVAMQISEKH--DVVFLITKYGYIHLYDLETGTCIYMNRI  298 (1630)
T ss_pred             CCceEEEEecCCCccCCC--C-CccccccccCCcccccCcceEEEecccc--CEEEEEecCceEEEEecccchhhhhccc
Confidence             26888888843211100  0 00111111111   12223345556554  677777889999999999999887665 


Q ss_pred             cCCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621          221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       221 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                      ...+|...+.++...-++.....|.|.-..+..
T Consensus       299 s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             cCCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence            344555445454444455555666666555544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.45  E-value=0.0097  Score=51.18  Aligned_cols=155  Identities=15%  Similarity=0.138  Sum_probs=98.8

Q ss_pred             ccCCCEEEEecCCCcEEEEeCCCCceeEEccCC----CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621           92 TADGSYLFTGGLSGNVYAISVPKGDILRSFSAH----DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP  167 (387)
Q Consensus        92 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  167 (387)
                      ..+|..++.+ .++.||.-++......+.++..    -..|..+..+|+|++|+..+. ..|.+-.+.............
T Consensus        29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            3455666655 3477888787644444444322    236888999999999998865 578888884211000000000


Q ss_pred             CccceEeeec------cCCCeEEEEEeeCCC-CceEEEEeCCCcEEEEeCCCCc--EEEEEe----------cCCceeEE
Q 035621          168 DDLMLQKFVA------HNDSVTAITCCIGSF-NSIIISCSMDCTCKFWRLLNGT--HLSTVT----------FPCAIMGL  228 (387)
Q Consensus       168 ~~~~~~~~~~------~~~~i~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~--~~~~~~----------~~~~v~~~  228 (387)
                      .....+.+..      ...+|..+.|+|-+. +..|++-..|+.|++||+....  +. .+.          ....+.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence            0111223322      256799999999864 4689999999999999998622  22 332          11568899


Q ss_pred             EeCCCCCeEEEEc--cCCcEEEE
Q 035621          229 ALDPTETDFFAAG--SDGLIYKG  249 (387)
Q Consensus       229 ~~~~~~~~l~~~~--~dg~i~i~  249 (387)
                      +|.+++-.|++.+  ..|.|+-.
T Consensus       186 ~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          186 EFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEcCCCcEEEEEecCCCCCEEEE
Confidence            9999988888855  78888754

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.40  E-value=0.0054  Score=52.70  Aligned_cols=141  Identities=12%  Similarity=0.180  Sum_probs=86.2

Q ss_pred             CCeEEEEEccCCCcccccCCC-----CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc------------eeEEccC--
Q 035621           63 SGSVHLYNLWSSTPLHNIPVP-----EPVAPLATTADGSYLFTGGLSGNVYAISVPKGD------------ILRSFSA--  123 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~--  123 (387)
                      ++.||.-++.....-+.+..+     ..+..+..+|+|++||..+ +..|.|..+..+.            ..+.+.-  
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~  118 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE  118 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence            566666666544333333332     2577899999999999886 4579998887332            1112221  


Q ss_pred             ----CCCCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE
Q 035621          124 ----HDKPVSCLKISP---DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII  196 (387)
Q Consensus       124 ----~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  196 (387)
                          ...+|..+.|+|   .+..|++-..|+.|++||+....+... ..+ ..............|.+++|..++  -.|
T Consensus       119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~-k~~~~fg~d~~~~ev~S~~Fg~~~--lTL  194 (452)
T 3pbp_A          119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLN-KPNNSFGLDARVNDITDLEFSKDG--LTL  194 (452)
T ss_dssp             CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EES-CCCSEEESCSSCCCEEEEEECTTS--SCE
T ss_pred             cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chh-ccccccCCCcccceEEEEEEcCCC--cEE
Confidence                256799999999   456899999999999999965221111 000 000111222334678888887754  445


Q ss_pred             EE--EeCCCcEEEE
Q 035621          197 IS--CSMDCTCKFW  208 (387)
Q Consensus       197 ~s--~~~d~~i~iw  208 (387)
                      ..  .+..|.|+-.
T Consensus       195 Yvl~~t~~GDIYAl  208 (452)
T 3pbp_A          195 YCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             EEEecCCCCCEEEE
Confidence            54  4466776644

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.39  E-value=0.048  Score=46.01  Aligned_cols=253  Identities=7%  Similarity=-0.022  Sum_probs=128.4

Q ss_pred             CCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-----CCCCeeeEEeccCCCEEEEecCCCcEEEEeC
Q 035621           38 RSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-----VPEPVAPLATTADGSYLFTGGLSGNVYAISV  112 (387)
Q Consensus        38 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  112 (387)
                      ...+.++.+.+.....+     .+..|.| +...+.++.-....     ....+..+.+.+ +. +++++..+.|.. ..
T Consensus        35 ~~~~~~v~~~~~~~~~~-----~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~  105 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-----VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TT  105 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-----EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ES
T ss_pred             CCcEEEEEECCCCcEEE-----EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-EC
Confidence            34688888875433222     2345654 33333343222221     133688899876 44 444455664443 22


Q ss_pred             CCCceeEEcc---CCCCCeEEEEEcCCCCEEEEEeCCCcE-EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEe
Q 035621          113 PKGDILRSFS---AHDKPVSCLKISPDGSLLISGGDDGVI-ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC  188 (387)
Q Consensus       113 ~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  188 (387)
                      ..++.-....   .+...+..+.+.+++..++++ .+|.| +-.|--..           ...+  .......+..+.+.
T Consensus       106 DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~t-----------W~~~--~~~~~~~~~~~~~~  171 (327)
T 2xbg_A          106 DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKN-----------WQAL--VQEAIGVMRNLNRS  171 (327)
T ss_dssp             STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSS-----------EEEE--ECSCCCCEEEEEEC
T ss_pred             CCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCC-----------CEEe--ecCCCcceEEEEEc
Confidence            3343322222   233557788887777655555 45544 33332111           1111  12334567788887


Q ss_pred             eCCCCceEEEEeCCCcEEE-EeC--CCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccccee
Q 035621          189 IGSFNSIIISCSMDCTCKF-WRL--LNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQEL  265 (387)
Q Consensus       189 ~~~~~~~l~s~~~d~~i~i-wd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  265 (387)
                      ++  +.+++.+ .+|.+.. .|-  .+.+.+ .......+..+.+.+++..+ +++.+|.+++.+...+.......... 
T Consensus       172 ~~--~~~~~~g-~~G~~~~S~d~gG~tW~~~-~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~-  245 (327)
T 2xbg_A          172 PS--GEYVAVS-SRGSFYSTWEPGQTAWEPH-NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPL-  245 (327)
T ss_dssp             TT--SCEEEEE-TTSSEEEEECTTCSSCEEE-ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTT-
T ss_pred             CC--CcEEEEE-CCCcEEEEeCCCCCceeEC-CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCc-
Confidence            75  3666555 4454443 342  222332 12245678899999988655 44557777765322111111100000 


Q ss_pred             EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc--cCCCceeEEEE
Q 035621          266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE--LAGSISEMVIA  325 (387)
Q Consensus       266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~  325 (387)
                          ..+...+..+.+.+++..++++ .+|.| ++..+.|+.-..+...  ....+..+.|.
T Consensus       246 ----~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~  301 (327)
T 2xbg_A          246 ----RRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFF  301 (327)
T ss_dssp             ----SSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred             ----ccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence                0123458889999887777765 46766 4555666554444422  12356666665

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.34  E-value=0.033  Score=46.33  Aligned_cols=188  Identities=14%  Similarity=0.123  Sum_probs=93.7

Q ss_pred             CCCEEEEecCC-----CcEEEEeCCCCceeEE--ccCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCcccccC
Q 035621           94 DGSYLFTGGLS-----GNVYAISVPKGDILRS--FSAHDKPVSCLKISPDGSLLISGGDDG-----VIATVPIFQLVDEH  161 (387)
Q Consensus        94 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~  161 (387)
                      ++..++.|+.+     ..+.+||..+.+-...  +.........+.+  ++++++.|+.++     .+.+||+...    
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~----  134 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSN----  134 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTT----
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCC----
Confidence            66677777754     3588999877653222  2211222223333  567777777654     4667776321    


Q ss_pred             CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-------CcEEEEeCCCCcEEEEEe--cCCceeEEEeCC
Q 035621          162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-------CTCKFWRLLNGTHLSTVT--FPCAIMGLALDP  232 (387)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~  232 (387)
                            ....+..+....... +++.. +  +.+++.|+.+       ..+.+||+.+.+-...-.  .+..-.+++.. 
T Consensus       135 ------~W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-  203 (302)
T 2xn4_A          135 ------EWFHVAPMNTRRSSV-GVGVV-G--GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-  203 (302)
T ss_dssp             ------EEEEECCCSSCCBSC-EEEEE-T--TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred             ------eEeecCCCCCcccCc-eEEEE-C--CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-
Confidence                  111111111111111 12222 2  3666766543       358899988765332211  12111222222 


Q ss_pred             CCCeEEEEccC-----CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC-----cEEEEEC
Q 035621          233 TETDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG-----SVYIWEI  302 (387)
Q Consensus       233 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~  302 (387)
                      +++.++.|+.+     ..+.+||..+..........      .. ...-..+.  .++++++.|+.++     .+.+||+
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~------~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN------MC-RRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS------SC-CBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC------Cc-cccCeEEE--ECCEEEEECCcCCCcccccEEEEcC
Confidence            56677777654     46888998765433221110      01 11111122  2677788887653     4889998


Q ss_pred             CCccE
Q 035621          303 EKRQV  307 (387)
Q Consensus       303 ~~~~~  307 (387)
                      .+.+-
T Consensus       275 ~~~~W  279 (302)
T 2xn4_A          275 TTDKW  279 (302)
T ss_dssp             TTTEE
T ss_pred             CCCeE
Confidence            87654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.34  E-value=0.057  Score=45.84  Aligned_cols=208  Identities=10%  Similarity=0.063  Sum_probs=116.9

Q ss_pred             CeeeEEeccCCCEEEEe------------cCCCcEEEEeCCC--CceeEEc--cC-----CCCCeEEEEEcC--CCC-EE
Q 035621           85 PVAPLATTADGSYLFTG------------GLSGNVYAISVPK--GDILRSF--SA-----HDKPVSCLKISP--DGS-LL  140 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~------------~~dg~i~i~d~~~--~~~~~~~--~~-----~~~~v~~~~~~~--~~~-~l  140 (387)
                      ....+...|+|..++++            ..+|.|.++|+.+  ++. ..+  .+     .......+.+.+  ++. +|
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            35566677776544443            1689999999873  222 222  22     123567777755  344 44


Q ss_pred             EEEe-C--CCcEEEEeCCcccccCCCCCCCCccceEeeecc-CCCeEEEEEeeCCCCceEEEEeC---------------
Q 035621          141 ISGG-D--DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH-NDSVTAITCCIGSFNSIIISCSM---------------  201 (387)
Q Consensus       141 ~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~s~~~---------------  201 (387)
                      +++. .  +..|.+|++...        ......+..+.+. -...+.+.+.+++  .+.++...               
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~--------~~~~~~~~~~~g~~~~~pND~~v~~~G--~fyvt~~~~ftd~~~~~~e~~~~  199 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEE--------EKSLLHLKTIRHKLLPSVNDIVAVGPE--HFYATNDHYFIDPYLKSWEMHLG  199 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETT--------TTEEEEEEEECCTTCSSEEEEEEEETT--EEEEEESCSCSSHHHHHHHHHTT
T ss_pred             EEEECCCCCCeEEEEEEECC--------CCEEEEEeccccCCCCCCceEEEeCCC--CEEecCCcEeCCcccccchhhcc
Confidence            4442 2  467888877321        0111223333322 2357888888874  66666431               


Q ss_pred             --CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEE
Q 035621          202 --DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS  278 (387)
Q Consensus       202 --d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  278 (387)
                        .|.|.-+|.  ++.......-...+.++|+||++.++++. ..+.|+.|++.......   ....   + ...+..-.
T Consensus       200 ~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~---~~~~---~-~~~g~PDG  270 (355)
T 3sre_A          200 LAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT---PLRV---L-SFDTLVDN  270 (355)
T ss_dssp             CCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE---EEEE---E-ECSSEEEE
T ss_pred             CCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEe---cCEE---E-eCCCCCce
Confidence              234544544  33322233335678999999998887775 47899999987421111   0111   1 12466788


Q ss_pred             EEEec-CCCEEEEEeCC-CcEEEEECC--CccEEEEee
Q 035621          279 VMMMN-EGKNLVSAAED-GSVYIWEIE--KRQVVMVLK  312 (387)
Q Consensus       279 ~~~s~-~~~~l~s~~~d-g~i~iwd~~--~~~~~~~~~  312 (387)
                      +++.+ +|++.+++..+ +.|..|+.+  .+..+..+.
T Consensus       271 i~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          271 ISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             EEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             EEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            99999 59887766544 355555544  245555554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.30  E-value=0.066  Score=45.70  Aligned_cols=237  Identities=15%  Similarity=0.092  Sum_probs=121.7

Q ss_pred             CCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC-cccccC----CCCCeeeEEeccC---CCEEEEecC----C-
Q 035621           38 RSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST-PLHNIP----VPEPVAPLATTAD---GSYLFTGGL----S-  104 (387)
Q Consensus        38 ~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~-~~~~~~----~~~~v~~~~~~~~---~~~l~~~~~----d-  104 (387)
                      -.....++|.|++.+..     +..+|.|++++ .+++ .+..+.    .......++++|+   +..|+++..    + 
T Consensus        28 l~~P~~ia~~pdG~l~V-----~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~  101 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLV-----TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG  101 (354)
T ss_dssp             CSCEEEEEEEETTEEEE-----EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred             CCCCeEEEEcCCCeEEE-----EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence            34468899998765443     33458898887 3443 222211    2346889999997   555655443    2 


Q ss_pred             ---CcEEEEeCCCC--c-----ee-EEccC-CCCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCcccc
Q 035621          105 ---GNVYAISVPKG--D-----IL-RSFSA-HDKPVSCLKISPDGSLLISGGDD-------------GVIATVPIFQLVD  159 (387)
Q Consensus       105 ---g~i~i~d~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~  159 (387)
                         +.|..|+....  .     .+ ..+.. .......|+|.|||.+.++.+..             |.|.-++....  
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~--  179 (354)
T 3a9g_A          102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR--  179 (354)
T ss_dssp             CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC--
T ss_pred             CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC--
Confidence               56777876544  1     11 11221 11234679999999876664432             34444443110  


Q ss_pred             cCCCCCCCC-ccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC---cEEEEeCCC--------C--------cEEEEE
Q 035621          160 EHTDDKNPD-DLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC---TCKFWRLLN--------G--------THLSTV  219 (387)
Q Consensus       160 ~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~--------~--------~~~~~~  219 (387)
                        ....++- ...+. ..++. ....++|.|.. +.++++-....   .|.+..-..        +        .++..+
T Consensus       180 --~p~~npf~~~~i~-a~G~r-np~Gla~d~~~-g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~  254 (354)
T 3a9g_A          180 --PPADNPFPNSPIW-SYGHR-NPQGIDWHRAS-GVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDT  254 (354)
T ss_dssp             --CCTTSSSTTCCEE-EECCS-CCCEEEECTTT-CCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             --CCCCCCCCCCcEE-EEccC-CcceEEEeCCC-CCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeec
Confidence              0000000 01111 12332 23468888732 35444432221   233322100        0        122233


Q ss_pred             -ecCCceeEEEeC-------CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE
Q 035621          220 -TFPCAIMGLALD-------PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA  291 (387)
Q Consensus       220 -~~~~~v~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  291 (387)
                       .....+..++|.       .+|.++++.-..+.|...++......     .....++......+..+++.|||.++++.
T Consensus       255 ~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~-----~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          255 GSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV-----RKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             TTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE-----EEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             CCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc-----cceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence             223457788884       45666666666778888887652211     01112222234578999999999876665


Q ss_pred             e
Q 035621          292 A  292 (387)
Q Consensus       292 ~  292 (387)
                      .
T Consensus       330 ~  330 (354)
T 3a9g_A          330 S  330 (354)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.24  E-value=0.078  Score=47.29  Aligned_cols=296  Identities=11%  Similarity=0.046  Sum_probs=154.2

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEeccCCCC-------------------------CceeEEEcC-ccceeeecccc-CCC
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHFSGSRS-------------------------PRRGLTFAG-KPFIAASHISP-TTG   62 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------------------~v~~~~~~~-~~~~~~~~~~~-~~~   62 (387)
                      .|.+|+..|.|+|+-+.+++.+..+.-...                         ......++- ++.+...+++. .-.
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka  151 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA  151 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence            378899999999999999988776642110                         011111111 22222222222 223


Q ss_pred             CCeEEEEEccCCCcccccC--CCCCeeeEEec--cCCCEEEEecCC-------CcEE------------EEeCCCCceeE
Q 035621           63 SGSVHLYNLWSSTPLHNIP--VPEPVAPLATT--ADGSYLFTGGLS-------GNVY------------AISVPKGDILR  119 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~--~~~~~l~~~~~d-------g~i~------------i~d~~~~~~~~  119 (387)
                      +..|...++...++-+.+.  ....+..++|-  |+..|+++++..       |...            ..|..+.+...
T Consensus       152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~  231 (638)
T 3sbq_A          152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF  231 (638)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred             CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence            4566666776666544444  44678888886  677888877632       2210            11222222211


Q ss_pred             EccCCCCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEeCCcccccCCC----CCC---------CC---
Q 035621          120 SFSAHDKPVSCLKISPDGSLLISGGDDG---------------VIATVPIFQLVDEHTD----DKN---------PD---  168 (387)
Q Consensus       120 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~~~~~~~~----~~~---------~~---  168 (387)
                      .+. -.+....+...+++.+.++.+.+.               .+.++++.+.......    ..+         ..   
T Consensus       232 Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~  310 (638)
T 3sbq_A          232 QVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG  310 (638)
T ss_dssp             EEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred             EEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence            111 022333455577788888776542               2566665432111000    000         00   


Q ss_pred             -ccceEeeeccCCCeEEEEEeeCCCCceEEE-EeCCCcEEEEeCCCC------c-------EEEEEecCCceeEEEeCCC
Q 035621          169 -DLMLQKFVAHNDSVTAITCCIGSFNSIIIS-CSMDCTCKFWRLLNG------T-------HLSTVTFPCAIMGLALDPT  233 (387)
Q Consensus       169 -~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~------~-------~~~~~~~~~~v~~~~~~~~  233 (387)
                       ...+..+..-......+.++|++  ++++. +-.+.++.++|++..      +       .....+........+|.++
T Consensus       311 ~~~~~~~~iP~pksPHGv~vsPDG--kyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~  388 (638)
T 3sbq_A          311 KDSKFTRYVPVPKNPHGCNTSSDG--KYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGR  388 (638)
T ss_dssp             BCCSSEEEEEESSSCCCEEECTTS--CEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSS
T ss_pred             cCCceEEEEeCCCCCcceeeCCCC--CEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCC
Confidence             01111111222233456667775  55554 455889999998742      1       1334445677899999999


Q ss_pred             CCeEEEEccCCcEEEEeccccccccc-cccceeEeecccccccEEEE-----EEecCCCEEEEEe---CCCcE-------
Q 035621          234 ETDFFAAGSDGLIYKGLLKYQSRQQM-HKGQELVTLANRHDGVVVSV-----MMMNEGKNLVSAA---EDGSV-------  297 (387)
Q Consensus       234 ~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~-----~~s~~~~~l~s~~---~dg~i-------  297 (387)
                      |.-..+-.-|..|..|++....+... .+...+.....-|-.+-...     .-.|+|++|++..   .|..+       
T Consensus       389 G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~p  468 (638)
T 3sbq_A          389 GNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHP  468 (638)
T ss_dssp             SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCC
T ss_pred             CceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCC
Confidence            94444555799999999976421110 00112222222333322111     1257899999874   45544       


Q ss_pred             ---EEEECCCccEE
Q 035621          298 ---YIWEIEKRQVV  308 (387)
Q Consensus       298 ---~iwd~~~~~~~  308 (387)
                         .+.|+...+..
T Consensus       469 en~QlidIsGdkM~  482 (638)
T 3sbq_A          469 ENDQLIDISGDEMK  482 (638)
T ss_dssp             EEEEEEECSSSSCE
T ss_pred             CcceeEecCCCceE
Confidence               67787665443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.18  E-value=0.076  Score=44.00  Aligned_cols=225  Identities=10%  Similarity=0.073  Sum_probs=109.7

Q ss_pred             CCcEEEeeC-CC-----CcEEEEeCCCCceeEe--ccCCCCCceeEEEcCccceeeeccccCCC-----CCeEEEEEccC
Q 035621            7 CNEVILTSS-PE-----GPITAYNPSSGAILAH--FSGSRSPRRGLTFAGKPFIAASHISPTTG-----SGSVHLYNLWS   73 (387)
Q Consensus         7 ~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----d~~v~vw~~~~   73 (387)
                      ++.+++.|+ .+     ..+.+||+.+.+....  +..... -.+++...+..+..     |+.     ...+.+||..+
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~l~v~-----GG~~~~~~~~~~~~~d~~~   87 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRR-YVASVSLHDRIYVI-----GGYDGRSRLSSVECLDYTA   87 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEE-----CCBCSSCBCCCEEEEETTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhc-cccEEEECCEEEEE-----cCCCCCccCceEEEEECCC
Confidence            456777777 33     3689999887754332  221111 12222233333322     332     24688999887


Q ss_pred             CC---cccccCCCCC-eeeEEeccCCCEEEEecCC-----CcEEEEeCCCCcee--EEccCCCCCeEEEEEcCCCCEEEE
Q 035621           74 ST---PLHNIPVPEP-VAPLATTADGSYLFTGGLS-----GNVYAISVPKGDIL--RSFSAHDKPVSCLKISPDGSLLIS  142 (387)
Q Consensus        74 ~~---~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~  142 (387)
                      .+   -...-..+.+ ....+...+++.++.|+.+     ..+.+||+.+.+-.  ..+......-..+.+  ++++++.
T Consensus        88 ~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~  165 (301)
T 2vpj_A           88 DEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCL  165 (301)
T ss_dssp             CTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEE
T ss_pred             CCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEE
Confidence            76   3322221211 1111222366777777654     36889998776432  222222222223333  6677777


Q ss_pred             EeCC-----CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-----CcEEEEeCCC
Q 035621          143 GGDD-----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-----CTCKFWRLLN  212 (387)
Q Consensus       143 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~  212 (387)
                      |+.+     ..+.+||+...          ....+..+....... +++. .+  +.+++.|+.+     ..+.+||+.+
T Consensus       166 GG~~~~~~~~~~~~~d~~~~----------~W~~~~~~p~~r~~~-~~~~-~~--~~i~v~GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          166 GGYDGLNILNSVEKYDPHTG----------HWTNVTPMATKRSGA-GVAL-LN--DHIYVVGGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             CCBCSSCBCCCEEEEETTTT----------EEEEECCCSSCCBSC-EEEE-ET--TEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             CCCCCCcccceEEEEeCCCC----------cEEeCCCCCcccccc-eEEE-EC--CEEEEEeCCCCCcccceEEEEeCCC
Confidence            7765     35778887321          111111111111111 1222 22  3677777764     4689999987


Q ss_pred             CcEEEEEec--CCceeEEEeCCCCCeEEEEccC-----CcEEEEecccc
Q 035621          213 GTHLSTVTF--PCAIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQ  254 (387)
Q Consensus       213 ~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  254 (387)
                      .+-...-..  +..-.+++.. +++.++.|+.+     ..+.+||..+.
T Consensus       232 ~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          232 DSWTTVTSMTTPRCYVGATVL-RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CcEEECCCCCCcccceeEEEE-CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            653322111  1111122222 56666666654     34677777653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.18  E-value=0.077  Score=44.03  Aligned_cols=225  Identities=12%  Similarity=0.125  Sum_probs=108.8

Q ss_pred             CCcEEEeeCCC----CcEEEEeCCCCceeEe--ccCCCCCceeEEEcCccceeeeccccCCCC-----CeEEEEEccCCC
Q 035621            7 CNEVILTSSPE----GPITAYNPSSGAILAH--FSGSRSPRRGLTFAGKPFIAASHISPTTGS-----GSVHLYNLWSST   75 (387)
Q Consensus         7 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d-----~~v~vw~~~~~~   75 (387)
                      ++.+++.|+.+    ..+..||+.+.+....  +..... -.+++...+..+..     |+.+     ..+.+||..+.+
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~lyv~-----GG~~~~~~~~~~~~~d~~~~~   88 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRC-RAGMVYMAGLVFAV-----GGFNGSLRVRTVDSYDPVKDQ   88 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEEETTEEEEE-----SCBCSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccc-cceEEEECCEEEEE-----eCcCCCccccceEEECCCCCc
Confidence            34567777753    4588999887654332  211111 12222223333322     3322     458888887764


Q ss_pred             cccccC--CCCCeeeEEeccCCCEEEEecCCC-----cEEEEeCCCCceeEE--ccCCCCCeEEEEEcCCCCEEEEEeCC
Q 035621           76 PLHNIP--VPEPVAPLATTADGSYLFTGGLSG-----NVYAISVPKGDILRS--FSAHDKPVSCLKISPDGSLLISGGDD  146 (387)
Q Consensus        76 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d  146 (387)
                      -...-.  .+..-.+++ .-+++.++.|+.++     .+.+||+.+.+-...  +.........+.+  ++++++.|+.+
T Consensus        89 W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  165 (302)
T 2xn4_A           89 WTSVANMRDRRSTLGAA-VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYD  165 (302)
T ss_dssp             EEEECCCSSCCBSCEEE-EETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred             eeeCCCCCccccceEEE-EECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCC
Confidence            332222  211112222 23667777777553     578899877653322  2211222222333  56677777643


Q ss_pred             -------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-----CcEEEEeCCCCc
Q 035621          147 -------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-----CTCKFWRLLNGT  214 (387)
Q Consensus       147 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~  214 (387)
                             ..+.+||+...          ....+..+....... +++.. +  +.+++.|+.+     ..+.+||+.+.+
T Consensus       166 ~~~~~~~~~~~~yd~~~~----------~W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          166 VASRQCLSTVECYNATTN----------EWTYIAEMSTRRSGA-GVGVL-N--NLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             TTTTEECCCEEEEETTTT----------EEEEECCCSSCCBSC-EEEEE-T--TEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             CCCCccccEEEEEeCCCC----------cEEECCCCccccccc-cEEEE-C--CEEEEECCCCCCcccceEEEEeCCCCC
Confidence                   34778887431          111111111111111 22222 2  4777777764     368899998765


Q ss_pred             EEEEEec--CCceeEEEeCCCCCeEEEEccCC-----cEEEEeccccc
Q 035621          215 HLSTVTF--PCAIMGLALDPTETDFFAAGSDG-----LIYKGLLKYQS  255 (387)
Q Consensus       215 ~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  255 (387)
                      -...-..  +..-..++. .+++.++.|+.++     .+.+||..+..
T Consensus       232 W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          232 WRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             EEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             EeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            3322111  111112222 2566777776543     47888887643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.17  E-value=0.027  Score=47.42  Aligned_cols=195  Identities=14%  Similarity=0.058  Sum_probs=104.2

Q ss_pred             CEEEEecCCCcEEEEeCCCCceeEEccCC-CCCeEEEEEc--C-CCCEEEEE-eCCCcEEEEeCCcccccCCCCCCCCcc
Q 035621           96 SYLFTGGLSGNVYAISVPKGDILRSFSAH-DKPVSCLKIS--P-DGSLLISG-GDDGVIATVPIFQLVDEHTDDKNPDDL  170 (387)
Q Consensus        96 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~  170 (387)
                      ..+++++.||.|+-+|.++|+...+++.. ..++....-.  + ++..++.. +.||.|..++..            .+.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~------------~G~   78 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAH------------QGL   78 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETT------------TEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECC------------CCc
Confidence            47888999999999999999998887643 1222221100  1 22333333 589999988873            221


Q ss_pred             ceEeeec----cCCCeEEEEEeeCC-------CCceEEEEeCCCcEEEEeCCCCcEEEEEecCCce--------eEEEeC
Q 035621          171 MLQKFVA----HNDSVTAITCCIGS-------FNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAI--------MGLALD  231 (387)
Q Consensus       171 ~~~~~~~----~~~~i~~~~~~~~~-------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v--------~~~~~~  231 (387)
                      ....+..    ...++.. .-.|--       .+..+++|+.+|++...|+++|+.+..+....+.        .|....
T Consensus        79 ~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~  157 (339)
T 2be1_A           79 QKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEE  157 (339)
T ss_dssp             EEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------
T ss_pred             EEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccc
Confidence            1111111    1122221 000000       2468899999999999999999999999754321        111111


Q ss_pred             -----CCCCeEEEEccCCcEEEEeccccccccccccceeEeecc-cccccE-EEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          232 -----PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLAN-RHDGVV-VSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       232 -----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v-~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                           ..+..++.+..+..+.+.+ +++.....    ....... .....+ ..-..+.|+.+ +.++.||.|.-+|..+
T Consensus       158 d~~~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~----~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~  231 (339)
T 2be1_A          158 KIKLQECENMIVIGKTIFELGIHS-YDGASYNV----TYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDF  231 (339)
T ss_dssp             -------CCEEEEEEEEEECEECC-TTSCCCCC----EEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTT
T ss_pred             ccccccCCCeEEEecceEEEEEEC-CCCCeEEE----ecccccccccccccccccccccCCcE-EEECCCCEEEEEECCC
Confidence                 1235677776666666555 22211000    0000000 000000 00001234666 4468899999999999


Q ss_pred             ccEEE
Q 035621          305 RQVVM  309 (387)
Q Consensus       305 ~~~~~  309 (387)
                      |+.+.
T Consensus       232 G~~~W  236 (339)
T 2be1_A          232 RIARW  236 (339)
T ss_dssp             CCEEE
T ss_pred             CcEEE
Confidence            98876

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.09  E-value=0.094  Score=43.57  Aligned_cols=219  Identities=12%  Similarity=0.053  Sum_probs=107.6

Q ss_pred             CCeEEEEEccCCCcccccCCCC-CeeeEEeccCCCEEEEecCC----CcEEEEeCCCCceeE--EccCCCCCeEEEEEcC
Q 035621           63 SGSVHLYNLWSSTPLHNIPVPE-PVAPLATTADGSYLFTGGLS----GNVYAISVPKGDILR--SFSAHDKPVSCLKISP  135 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~  135 (387)
                      ...+.+||..+++-...-..+. .....+..-++..++.|+.+    ..+.+||+.+.+-..  .+.........+.+  
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--  100 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--  100 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--
T ss_pred             CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--
Confidence            3457777776654322211111 11112222366677777754    578899988765322  22222222223333  


Q ss_pred             CCCEEEEEeCC------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC--------
Q 035621          136 DGSLLISGGDD------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM--------  201 (387)
Q Consensus       136 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--------  201 (387)
                      ++++++.|+.+      ..+.+||....          ....+..+......- +++. .+  +.+++.|+.        
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~----------~W~~~~~~p~~r~~~-~~~~-~~--~~iyv~GG~~~~~~~~~  166 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTE----------SWHTKPSMLTQRCSH-GMVE-AN--GLIYVCGGSLGNNVSGR  166 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTT----------EEEEECCCSSCCBSC-EEEE-ET--TEEEEECCEESCTTTCE
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCC----------ceEeCCCCcCCccee-EEEE-EC--CEEEEECCCCCCCCccc
Confidence            66777777765      45788887431          111111111111111 1122 22  366666654        


Q ss_pred             -CCcEEEEeCCCCcEEEEEec--CCceeEEEeCCCCCeEEEEccC-----CcEEEEeccccccccccccceeEeeccccc
Q 035621          202 -DCTCKFWRLLNGTHLSTVTF--PCAIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLANRHD  273 (387)
Q Consensus       202 -d~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  273 (387)
                       -..+.+||+.+.+-...-..  +..-.+++.. +++.++.|+.+     ..+.+||+.+..........       ...
T Consensus       167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-------~~r  238 (306)
T 3ii7_A          167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP-------WKG  238 (306)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCS-------CCB
T ss_pred             ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC-------CCc
Confidence             34588999887743322121  1111222222 56667776653     46888888775433221110       111


Q ss_pred             ccEEEEEEecCCCEEEEEeCC-----CcEEEEECCCccE
Q 035621          274 GVVVSVMMMNEGKNLVSAAED-----GSVYIWEIEKRQV  307 (387)
Q Consensus       274 ~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~  307 (387)
                      .....+.+  ++++++.|+.+     ..+.+||+.+.+-
T Consensus       239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW  275 (306)
T ss_dssp             SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred             cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence            11222222  67788888754     4688899887643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.98  E-value=0.14  Score=43.65  Aligned_cols=242  Identities=12%  Similarity=0.040  Sum_probs=121.3

Q ss_pred             ccccCCCc-EEEeeCCCCcEEEEeCCCCceeEe---c----cCCCCCceeEEEcCc----cceeeeccccCC---CCCeE
Q 035621            2 LHHLPCNE-VILTSSPEGPITAYNPSSGAILAH---F----SGSRSPRRGLTFAGK----PFIAASHISPTT---GSGSV   66 (387)
Q Consensus         2 l~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~---~----~~~~~~v~~~~~~~~----~~~~~~~~~~~~---~d~~v   66 (387)
                      |+|.|+|+ ++++ ...|.|++++. .+.....   +    .........++++|+    +.+.........   ....|
T Consensus        23 i~~~pdG~~l~V~-e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v  100 (353)
T 2g8s_A           23 LAFLPDNHGMLIT-LRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAV  100 (353)
T ss_dssp             EEECSTTCCEEEE-ETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEE
T ss_pred             EEEcCCCCEEEEE-eCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEE
Confidence            57899999 6655 45689999985 3432211   1    112334688999984    332222111000   02356


Q ss_pred             EEEEccCCC-------c-ccccCC----CCCeeeEEeccCCCEEEEecC-------------CCcEEEEeCCCCc-----
Q 035621           67 HLYNLWSST-------P-LHNIPV----PEPVAPLATTADGSYLFTGGL-------------SGNVYAISVPKGD-----  116 (387)
Q Consensus        67 ~vw~~~~~~-------~-~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~-----  116 (387)
                      ..|++....       . +..+..    ......++|.|||.+.++-+.             .|.|.-++....-     
T Consensus       101 ~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~np  180 (353)
T 2g8s_A          101 GYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNP  180 (353)
T ss_dssp             EEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCT
T ss_pred             EEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCC
Confidence            666654321       0 111111    122467999999965555432             2457667754320     


Q ss_pred             -------eeEEc-cCCCCCeEEEEEcCCCCEEEEEeCC--CcEEEEeCCcccc----cCCC---------------CCCC
Q 035621          117 -------ILRSF-SAHDKPVSCLKISPDGSLLISGGDD--GVIATVPIFQLVD----EHTD---------------DKNP  167 (387)
Q Consensus       117 -------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~----~~~~---------------~~~~  167 (387)
                             ....+ .++ .....++|+|+...|.++...  +.=.|.-+.....    ....               ....
T Consensus       181 f~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~  259 (353)
T 2g8s_A          181 FIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAG  259 (353)
T ss_dssp             TTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTT
T ss_pred             CcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCC
Confidence                   11111 123 346789999943344444332  1112222211100    0000               0000


Q ss_pred             CccceEeeeccCCCeEEEEEeeCC-----CCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceeEEEeCCCCCeEE
Q 035621          168 DDLMLQKFVAHNDSVTAITCCIGS-----FNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIMGLALDPTETDFF  238 (387)
Q Consensus       168 ~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~  238 (387)
                      ...+...+..| .....+.+....     .+.++++.-..+.|...++..++......    ....+..+++.|||.+++
T Consensus       260 ~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv  338 (353)
T 2g8s_A          260 TEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYV  338 (353)
T ss_dssp             SCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEE
T ss_pred             ccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEE
Confidence            11223333333 356677775421     35777777777888888887665443322    235789999999998666


Q ss_pred             EEc-cCCcEE
Q 035621          239 AAG-SDGLIY  247 (387)
Q Consensus       239 ~~~-~dg~i~  247 (387)
                      +.. .+|.|+
T Consensus       339 ~td~~~g~I~  348 (353)
T 2g8s_A          339 LTDESSGELL  348 (353)
T ss_dssp             EECSTTEEEE
T ss_pred             EEeCCCCEEE
Confidence            543 344443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.97  E-value=0.14  Score=43.60  Aligned_cols=235  Identities=13%  Similarity=0.066  Sum_probs=118.8

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc-eeEecc---CCCCCceeEEEcCc----cceeeeccccCCCC----CeEEEE
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA-ILAHFS---GSRSPRRGLTFAGK----PFIAASHISPTTGS----GSVHLY   69 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~----~~~~~~~~~~~~~d----~~v~vw   69 (387)
                      ++|.|+|+++++- .+|.|++++ .+++ .+..+.   ........|+++|+    +.+....-. ...+    ..|..|
T Consensus        34 ia~~pdG~l~V~e-~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~-~~~~~~~~~~v~r~  110 (354)
T 3a9g_A           34 IAPLGGGRYLVTE-RPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASY-FAEGGHIRNRVIRG  110 (354)
T ss_dssp             EEEEETTEEEEEE-TTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE-ECGGGCEEEEEEEE
T ss_pred             EEEcCCCeEEEEe-CCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEec-cCCCCCcceEEEEE
Confidence            5789999866664 459999998 4554 222221   22345789999986    332221100 0112    567777


Q ss_pred             EccCCC-------cc-cccCC--CCCeeeEEeccCCCEEEEecC-------------CCcEEEEeCCCC---------ce
Q 035621           70 NLWSST-------PL-HNIPV--PEPVAPLATTADGSYLFTGGL-------------SGNVYAISVPKG---------DI  117 (387)
Q Consensus        70 ~~~~~~-------~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~---------~~  117 (387)
                      +.....       .+ ..+..  ......++|.|||.+.++-+.             .|.|.-++....         ..
T Consensus       111 ~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~  190 (354)
T 3a9g_A          111 RLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSP  190 (354)
T ss_dssp             EECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCC
T ss_pred             EECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCc
Confidence            765431       11 11211  123567999999986666432             245666665321         01


Q ss_pred             eEEccCCCCCeEEEEEcC-CCCEEEEEeCCC---cEEEEeCCcc--cccCCCCC--CCCccceEeeeccCCCeEEEEEee
Q 035621          118 LRSFSAHDKPVSCLKISP-DGSLLISGGDDG---VIATVPIFQL--VDEHTDDK--NPDDLMLQKFVAHNDSVTAITCCI  189 (387)
Q Consensus       118 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg---~i~iwd~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~  189 (387)
                      +.. .++. ....++|+| +++++++-....   .|.+..-...  |.......  .....++..+.........+++..
T Consensus       191 i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~  268 (354)
T 3a9g_A          191 IWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVH  268 (354)
T ss_dssp             EEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECC
T ss_pred             EEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEEC
Confidence            111 1333 346899999 566444432221   1333221100  00000000  001122233311223566777732


Q ss_pred             -----CCCCceEEEEeCCCcEEEEeCCCC-cEE--EEEec--CCceeEEEeCCCCCeEEEEc
Q 035621          190 -----GSFNSIIISCSMDCTCKFWRLLNG-THL--STVTF--PCAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       190 -----~~~~~~l~s~~~d~~i~iwd~~~~-~~~--~~~~~--~~~v~~~~~~~~~~~l~~~~  241 (387)
                           ..++.++++.-..+.|...++... +..  ..+-.  ...+..+++.|||.++++..
T Consensus       269 g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          269 GDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             SSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence                 123567777666778888888753 322  22221  35688999999997666654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.93  E-value=0.14  Score=42.69  Aligned_cols=225  Identities=15%  Similarity=0.094  Sum_probs=107.8

Q ss_pred             CCCcEEEeeCCC----CcEEEEeCCCCceeEe--ccCCCCCceeEEEcCccceeeeccccCCC---------CCeEEEEE
Q 035621            6 PCNEVILTSSPE----GPITAYNPSSGAILAH--FSGSRSPRRGLTFAGKPFIAASHISPTTG---------SGSVHLYN   70 (387)
Q Consensus         6 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------d~~v~vw~   70 (387)
                      -++.+++.|+.+    ..+.+||+.+.+....  +..... -.+++...+..+..     |+.         ...+.+||
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~~~~~lyv~-----GG~~~~~~~~~~~~~~~~~d   96 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRS-GLAGCVVGGLLYAV-----GGRNNSPDGNTDSSALDCYN   96 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCB-SCEEEEETTEEEEE-----CCEEEETTEEEECCCEEEEE
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccc-cceEEEECCEEEEE-----CCCcCCCCCCeecceEEEEC
Confidence            356677777732    3689999887654332  111111 11222223332222     333         24578888


Q ss_pred             ccCCCcccccCCC--CCeeeEEeccCCCEEEEecCC-----CcEEEEeCCCCceeEE--ccCCCCCeEEEEEcCCCCEEE
Q 035621           71 LWSSTPLHNIPVP--EPVAPLATTADGSYLFTGGLS-----GNVYAISVPKGDILRS--FSAHDKPVSCLKISPDGSLLI  141 (387)
Q Consensus        71 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~  141 (387)
                      ..+.+-...-..+  ..-.+++ .-+++.++.|+.+     ..+.+||+.+.+-...  +......-..+.+  ++++++
T Consensus        97 ~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv  173 (308)
T 1zgk_A           97 PMTNQWSPCAPMSVPRNRIGVG-VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYA  173 (308)
T ss_dssp             TTTTEEEECCCCSSCCBTCEEE-EETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred             CCCCeEeECCCCCcCccccEEE-EECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEE
Confidence            8776433222211  1111222 2266777777643     3688999877643221  2211222223333  567777


Q ss_pred             EEeCC-----CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-----CcEEEEeCC
Q 035621          142 SGGDD-----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-----CTCKFWRLL  211 (387)
Q Consensus       142 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~  211 (387)
                      .|+.+     ..+.+||+....          ...+..+....... +++.. +  +.+++.|+.+     ..+.+||+.
T Consensus       174 ~GG~~~~~~~~~~~~yd~~~~~----------W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~v~~yd~~  239 (308)
T 1zgk_A          174 VGGFDGTNRLNSAECYYPERNE----------WRMITAMNTIRSGA-GVCVL-H--NCIYAAGGYDGQDQLNSVERYDVE  239 (308)
T ss_dssp             ECCBCSSCBCCCEEEEETTTTE----------EEECCCCSSCCBSC-EEEEE-T--TEEEEECCBCSSSBCCCEEEEETT
T ss_pred             EeCCCCCCcCceEEEEeCCCCe----------EeeCCCCCCccccc-eEEEE-C--CEEEEEeCCCCCCccceEEEEeCC
Confidence            77754     457888874321          11111111111111 12222 2  4677777764     468999988


Q ss_pred             CCcEEEEEe--cCCceeEEEeCCCCCeEEEEccC-----CcEEEEecccc
Q 035621          212 NGTHLSTVT--FPCAIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQ  254 (387)
Q Consensus       212 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  254 (387)
                      +.+-...-.  .+..-.+++.. +++.++.|+.+     ..+.+||+.+.
T Consensus       240 ~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          240 TETWTFVAPMKHRRSALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCcEEECCCCCCCccceEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            764322111  11111222222 55666666643     34667776653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.87  E-value=0.15  Score=42.28  Aligned_cols=224  Identities=11%  Similarity=0.069  Sum_probs=109.6

Q ss_pred             CcEEEeeCC--CCcEEEEeCCCCceeEe--ccCCCCCceeEEEcCccceeeeccccCCC----CCeEEEEEccCCCcccc
Q 035621            8 NEVILTSSP--EGPITAYNPSSGAILAH--FSGSRSPRRGLTFAGKPFIAASHISPTTG----SGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         8 ~~~l~~~~~--dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----d~~v~vw~~~~~~~~~~   79 (387)
                      +.+++.|+.  ...+.+||..+.+-...  +....... +++...+..+..     |+.    -..+.+||..+++-...
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~lyv~-----GG~~~~~~~~~~~~d~~~~~W~~~   85 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDA-ACVFWDNVVYIL-----GGSQLFPIKRMDCYNVVKDSWYSK   85 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSC-EEEEETTEEEEE-----CCBSSSBCCEEEEEETTTTEEEEE
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCccccee-EEEEECCEEEEE-----eCCCCCCcceEEEEeCCCCeEEEC
Confidence            446667764  35799999987654322  22111112 222223333222     333    36788899877653332


Q ss_pred             cCCCCC-eeeEEeccCCCEEEEecCC------CcEEEEeCCCCceeEE--ccCCCCCeEEEEEcCCCCEEEEEeC-----
Q 035621           80 IPVPEP-VAPLATTADGSYLFTGGLS------GNVYAISVPKGDILRS--FSAHDKPVSCLKISPDGSLLISGGD-----  145 (387)
Q Consensus        80 ~~~~~~-v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-----  145 (387)
                      -..+.+ ....+..-+++.++.|+.+      ..+.+||+.+.+-...  +......-..+.+  ++++++.|+.     
T Consensus        86 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  163 (306)
T 3ii7_A           86 LGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNV  163 (306)
T ss_dssp             ECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTT
T ss_pred             CCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCC
Confidence            222211 1111222366777777755      4689999887653322  2111122222333  5666777764     


Q ss_pred             ----CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC-----CcEEEEeCCCCcEE
Q 035621          146 ----DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD-----CTCKFWRLLNGTHL  216 (387)
Q Consensus       146 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~  216 (387)
                          -..+.+||+...          ....+..+......- +++.. +  +.+++.|+.+     ..+.+||+.+.+-.
T Consensus       164 ~~~~~~~~~~yd~~~~----------~W~~~~~~p~~r~~~-~~~~~-~--~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  229 (306)
T 3ii7_A          164 SGRVLNSCEVYDPATE----------TWTELCPMIEARKNH-GLVFV-K--DKIFAVGGQNGLGGLDNVEYYDIKLNEWK  229 (306)
T ss_dssp             TCEECCCEEEEETTTT----------EEEEECCCSSCCBSC-EEEEE-T--TEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred             cccccceEEEeCCCCC----------eEEECCCccchhhcc-eEEEE-C--CEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence                344778887331          111111111111111 12222 2  3677777654     35889998876422


Q ss_pred             EE--EecCC-ceeEEEeCCCCCeEEEEccC-----CcEEEEeccccc
Q 035621          217 ST--VTFPC-AIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQS  255 (387)
Q Consensus       217 ~~--~~~~~-~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~  255 (387)
                      ..  +..+. ....+.+  +++.++.|+.+     ..+.+||..+..
T Consensus       230 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          230 MVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             ECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             ECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            21  11111 1222223  56777777754     457888877643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.83  E-value=0.16  Score=43.31  Aligned_cols=31  Identities=10%  Similarity=0.114  Sum_probs=20.0

Q ss_pred             cCCCEEEEEeCCC------cEEEEECCCccEEEEeec
Q 035621          283 NEGKNLVSAAEDG------SVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       283 ~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~  313 (387)
                      .++++++.|+.++      .|.++++++++.+.....
T Consensus       315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~  351 (357)
T 2uvk_A          315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE  351 (357)
T ss_dssp             ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred             eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence            4678888888653      466678888887765543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.70  E-value=0.32  Score=43.54  Aligned_cols=253  Identities=13%  Similarity=0.078  Sum_probs=143.3

Q ss_pred             ccccCCCCCeEEEEEccCCCcccccCCC--------------------------CCeee--EEec---cCCCEEEEec-C
Q 035621           56 HISPTTGSGSVHLYNLWSSTPLHNIPVP--------------------------EPVAP--LATT---ADGSYLFTGG-L  103 (387)
Q Consensus        56 ~~~~~~~d~~v~vw~~~~~~~~~~~~~~--------------------------~~v~~--~~~~---~~~~~l~~~~-~  103 (387)
                      .+.||+..|.|+|+-+.+++.++.+..-                          +....  +++.   .||++|+.-. .
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka  151 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA  151 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence            3556899999999999988877665510                          01111  2222   2577888776 4


Q ss_pred             CCcEEEEeCCCCceeEEcc-CCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC
Q 035621          104 SGNVYAISVPKGDILRSFS-AHDKPVSCLKIS--PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND  180 (387)
Q Consensus       104 dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (387)
                      +..|-..++...++-..+. .....+..++|-  |+..+++.+++...= +=+  +.... .............+.+...
T Consensus       152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P-~pn--dg~~~-~~~~~~~y~~f~~iD~~tm  227 (638)
T 3sbq_A          152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIP-HPN--DGKVF-DLQDENSYTMYNAIDAETM  227 (638)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEE-SSC--SSSCC-CTTSTTEEEEEEEEETTTC
T ss_pred             CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeecc-CCC--CCccc-ccCChhhceEEEEEcCCcc
Confidence            5578888888777655544 345678899986  688888888764211 000  00000 0000000011111111111


Q ss_pred             CeE----------EEEEeeCCCCceEEEEeCC---------------------------------------C-cEEEEeC
Q 035621          181 SVT----------AITCCIGSFNSIIISCSMD---------------------------------------C-TCKFWRL  210 (387)
Q Consensus       181 ~i~----------~~~~~~~~~~~~l~s~~~d---------------------------------------~-~i~iwd~  210 (387)
                      .|.          .....++  +.+.++.+.+                                       | .+.+.|.
T Consensus       228 ~v~~Qv~v~gnld~~~~~~~--g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~  305 (638)
T 3sbq_A          228 EMAFQVIVDGNLDNTDADYT--GRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG  305 (638)
T ss_dssp             SEEEEEEESSCCCCEEECSS--SSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred             EEEEEEEcCCChhhcCCCCC--CCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence            110          1111111  2333333211                                       1 2555565


Q ss_pred             CC----C-cEEEEEecCCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccc----cccceeEeecccccccEEEEE
Q 035621          211 LN----G-THLSTVTFPCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQM----HKGQELVTLANRHDGVVVSVM  280 (387)
Q Consensus       211 ~~----~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~  280 (387)
                      +.    + ...+.+..+.....+..+|||+++++++. +.++.++|+........    .....+.... .-.-.....+
T Consensus       306 ~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~-e~GlGPlHt~  384 (638)
T 3sbq_A          306 RKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP-ELGLGPLHTT  384 (638)
T ss_dssp             SCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC-BCCSCEEEEE
T ss_pred             ccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec-cCCCcccEEE
Confidence            54    2 23455556777888999999999999877 88999999986322111    0011111111 1244578899


Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCc----------cEEEEeeccc
Q 035621          281 MMNEGKNLVSAAEDGSVYIWEIEKR----------QVVMVLKNEL  315 (387)
Q Consensus       281 ~s~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~  315 (387)
                      |.++|....|--.|..|.-|++...          ..+.++..|.
T Consensus       385 Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y  429 (638)
T 3sbq_A          385 FDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY  429 (638)
T ss_dssp             ECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS
T ss_pred             ECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccccc
Confidence            9999966667778999999999874          5666676553

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.68  E-value=0.22  Score=41.42  Aligned_cols=218  Identities=11%  Similarity=0.066  Sum_probs=105.7

Q ss_pred             CeEEEEEccCCCcccccCCCC--CeeeEEeccCCCEEEEecC----C-----CcEEEEeCCCCceeEE--ccCCCCCeEE
Q 035621           64 GSVHLYNLWSSTPLHNIPVPE--PVAPLATTADGSYLFTGGL----S-----GNVYAISVPKGDILRS--FSAHDKPVSC  130 (387)
Q Consensus        64 ~~v~vw~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~----d-----g~i~i~d~~~~~~~~~--~~~~~~~v~~  130 (387)
                      ..+.+||..+.+-...-..+.  .-.+++ ..++.+++.|+.    +     ..+.+||+.+.+-...  +.........
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  117 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV  117 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence            457788876664332211111  111222 236667777765    2     3688999877643221  2211222223


Q ss_pred             EEEcCCCCEEEEEeCC-----CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC---
Q 035621          131 LKISPDGSLLISGGDD-----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD---  202 (387)
Q Consensus       131 ~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---  202 (387)
                      +.+  ++++++.|+.+     ..+.+||+....          ...+..+......- +++.. +  +.+++.|+.+   
T Consensus       118 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~----------W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~  181 (308)
T 1zgk_A          118 GVI--DGHIYAVGGSHGCIHHNSVERYEPERDE----------WHLVAPMLTRRIGV-GVAVL-N--RLLYAVGGFDGTN  181 (308)
T ss_dssp             EEE--TTEEEEECCEETTEECCCEEEEETTTTE----------EEECCCCSSCCBSC-EEEEE-T--TEEEEECCBCSSC
T ss_pred             EEE--CCEEEEEcCCCCCcccccEEEECCCCCe----------EeECCCCCccccce-EEEEE-C--CEEEEEeCCCCCC
Confidence            333  56777777644     357778773311          01111111111111 12222 2  4677777654   


Q ss_pred             --CcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccC-----CcEEEEeccccccccccccceeEeeccccc
Q 035621          203 --CTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLANRHD  273 (387)
Q Consensus       203 --~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  273 (387)
                        ..+.+||+.+.+-...-.  .+..-.+++.. +++.++.|+.+     ..+.+||+.+..........       ...
T Consensus       182 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-------~~r  253 (308)
T 1zgk_A          182 RLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK-------HRR  253 (308)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS-------SCC
T ss_pred             cCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC-------CCc
Confidence              458899987764322111  11111222222 56677777654     56889998775433221110       011


Q ss_pred             ccEEEEEEecCCCEEEEEeCC-----CcEEEEECCCccEE
Q 035621          274 GVVVSVMMMNEGKNLVSAAED-----GSVYIWEIEKRQVV  308 (387)
Q Consensus       274 ~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~  308 (387)
                      .....+.  -++++++.|+.+     ..+.+||+.+.+-.
T Consensus       254 ~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          254 SALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             BSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             cceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            1111222  266777887754     35788888776543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.57  E-value=0.26  Score=41.04  Aligned_cols=220  Identities=7%  Similarity=-0.017  Sum_probs=105.1

Q ss_pred             CeEEEEEccCCCccc-ccCCC-CCeeeEEeccCCCEEEEecC----C-------CcEEEEeCCCCceeEE--ccCCCCCe
Q 035621           64 GSVHLYNLWSSTPLH-NIPVP-EPVAPLATTADGSYLFTGGL----S-------GNVYAISVPKGDILRS--FSAHDKPV  128 (387)
Q Consensus        64 ~~v~vw~~~~~~~~~-~~~~~-~~v~~~~~~~~~~~l~~~~~----d-------g~i~i~d~~~~~~~~~--~~~~~~~v  128 (387)
                      ..+..||..+++-.. .++.+ ..........++..++.|+.    +       ..+..||..+.+-...  +.......
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~   92 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF   92 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence            568888887765332 11111 12222333457777778873    1       1277889877653221  11111111


Q ss_pred             EEEEEcCCCCEEEEEeCC--------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe
Q 035621          129 SCLKISPDGSLLISGGDD--------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS  200 (387)
Q Consensus       129 ~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~  200 (387)
                      ..+.+  +++.++.|+.+        ..+.+||.....          ...+..+......- +++. .+  +.+++.|+
T Consensus        93 ~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~----------W~~~~~~p~~r~~~-~~~~-~~--~~iyv~GG  156 (315)
T 4asc_A           93 GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK----------WGESDPLPYVVYGH-TVLS-HM--DLVYVIGG  156 (315)
T ss_dssp             EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE----------EEECCCCSSCCBSC-EEEE-ET--TEEEEECC
T ss_pred             eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc----------EeECCCCCCcccce-eEEE-EC--CEEEEEeC
Confidence            22222  56677777642        357788874310          01111111111111 1222 22  36777776


Q ss_pred             C-C-----CcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCC-----cEEEEeccccccccccccceeEe
Q 035621          201 M-D-----CTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDG-----LIYKGLLKYQSRQQMHKGQELVT  267 (387)
Q Consensus       201 ~-d-----~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~  267 (387)
                      . +     ..+.+||+.+.+-...-.  .+..-.+++.. +++.++.|+.++     .+.+||..+.........     
T Consensus       157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-----  230 (315)
T 4asc_A          157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF-----  230 (315)
T ss_dssp             BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCC-----
T ss_pred             CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCC-----
Confidence            6 2     468899988764322111  11111222222 567777777654     477888876533222110     


Q ss_pred             ecccccccEEEEEEecCCCEEEEEeCCC--------------cEEEEECCCccEEE
Q 035621          268 LANRHDGVVVSVMMMNEGKNLVSAAEDG--------------SVYIWEIEKRQVVM  309 (387)
Q Consensus       268 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~  309 (387)
                        .........+.  -++++++.|+.++              .+.+||+.+.+-..
T Consensus       231 --p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  282 (315)
T 4asc_A          231 --PQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEG  282 (315)
T ss_dssp             --SSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred             --CCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhh
Confidence              01111111222  2567777777532              36788887765443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.49  E-value=0.58  Score=44.00  Aligned_cols=145  Identities=13%  Similarity=0.095  Sum_probs=76.3

Q ss_pred             CCCcEEEeeCCC----CcEEEEeCCCCceeEec-c-------CCCCCceeEEEc-CccceeeeccccCCC------CCeE
Q 035621            6 PCNEVILTSSPE----GPITAYNPSSGAILAHF-S-------GSRSPRRGLTFA-GKPFIAASHISPTTG------SGSV   66 (387)
Q Consensus         6 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~-------~~~~~v~~~~~~-~~~~~~~~~~~~~~~------d~~v   66 (387)
                      .++.+++.|+.+    ..+.+||+.+++....- .       ........+.+. .+..+..     |+.      -..+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~-----GG~~~~~~~~~dv  470 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLI-----GGRKAPHQGLSDN  470 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEE-----CCBSSTTCBCCCC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEE-----cCCCCCCCccccE
Confidence            356677777743    46888998876543322 1       111112223332 3333322     332      2357


Q ss_pred             EEEEccCCCcccccCCC--CCeeeEEeccCCCEEEEecCCC--cEEEEeCCCCceeEE-----ccCCCCCeEEEEEcCC-
Q 035621           67 HLYNLWSSTPLHNIPVP--EPVAPLATTADGSYLFTGGLSG--NVYAISVPKGDILRS-----FSAHDKPVSCLKISPD-  136 (387)
Q Consensus        67 ~vw~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~-----~~~~~~~v~~~~~~~~-  136 (387)
                      .+||..+.+-...-..+  ..-.+++...+++.++.|+.++  .+.+||+.+.+-...     +........++.+..+ 
T Consensus       471 ~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          471 WIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             EEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             EEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence            88888775433222222  2222333334788888887654  799999877653221     1112222334555554 


Q ss_pred             CCEEEEEeC--C-----CcEEEEeCC
Q 035621          137 GSLLISGGD--D-----GVIATVPIF  155 (387)
Q Consensus       137 ~~~l~~~~~--d-----g~i~iwd~~  155 (387)
                      +++++.|+.  +     ..+.+||+.
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~  576 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYD  576 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEEC
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEcc
Confidence            667777775  2     357888874

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.48  E-value=0.34  Score=41.26  Aligned_cols=237  Identities=12%  Similarity=0.032  Sum_probs=116.8

Q ss_pred             CceeEEEcCccc-eeeeccccCCCCCeEEEEEccCCCc---ccccC-----CCCCeeeEEeccC---CCEEEEecC----
Q 035621           40 PRRGLTFAGKPF-IAASHISPTTGSGSVHLYNLWSSTP---LHNIP-----VPEPVAPLATTAD---GSYLFTGGL----  103 (387)
Q Consensus        40 ~v~~~~~~~~~~-~~~~~~~~~~~d~~v~vw~~~~~~~---~~~~~-----~~~~v~~~~~~~~---~~~l~~~~~----  103 (387)
                      ....|+|.|++. +..     +...|.|++++.. +..   +..+.     .......++++|+   +..|++...    
T Consensus        19 ~P~~i~~~pdG~~l~V-----~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~   92 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLI-----TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD   92 (353)
T ss_dssp             SEEEEEECSTTCCEEE-----EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred             CcEEEEEcCCCCEEEE-----EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence            467899999765 443     2346889988853 321   11111     2345788999996   555555432    


Q ss_pred             ----CCcEEEEeCCCC--c-----ee-EEccC---CCCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEeCC
Q 035621          104 ----SGNVYAISVPKG--D-----IL-RSFSA---HDKPVSCLKISPDGSLLISGGDD-------------GVIATVPIF  155 (387)
Q Consensus       104 ----dg~i~i~d~~~~--~-----~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-------------g~i~iwd~~  155 (387)
                          ...|..|++...  .     .+ ..+..   .......|+|.|||.+.++.+..             |.|.-++..
T Consensus        93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d  172 (353)
T 2g8s_A           93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ  172 (353)
T ss_dssp             SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred             CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence                235666666433  1     11 11211   11224679999999755554332             345555542


Q ss_pred             cccccCCCCCCC--CccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-CCcEEEEeCCCC-------------------
Q 035621          156 QLVDEHTDDKNP--DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-DCTCKFWRLLNG-------------------  213 (387)
Q Consensus       156 ~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~-------------------  213 (387)
                      ........-...  ....+.. .++ .....++|.|.. +.++++-.. ++.=.|.-+..+                   
T Consensus       173 G~~p~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~-g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~  249 (353)
T 2g8s_A          173 GEIPDDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWS-NALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI  249 (353)
T ss_dssp             SCCCTTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTT-TEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred             CCCCCCCCCcCCCCCCccEEE-EcC-cCccceEEECCC-CCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence            110000000000  0111111 223 235678888732 344443221 111112111111                   


Q ss_pred             ------------cEEEEEecCCceeEEEeCC-------CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccc
Q 035621          214 ------------THLSTVTFPCAIMGLALDP-------TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDG  274 (387)
Q Consensus       214 ------------~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  274 (387)
                                  .++..+.+...+..++|..       ++.++++.-..+.|...++......      ....++.....
T Consensus       250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~------~~~~~~~~~~~  323 (353)
T 2g8s_A          250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT------EDGRILTDRGQ  323 (353)
T ss_dssp             TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEE------EEEEESGGGCC
T ss_pred             CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEe------eeEEcccCCCC
Confidence                        1122333344567777764       4566666666778887777642111      11112223345


Q ss_pred             cEEEEEEecCCCEEEEE
Q 035621          275 VVVSVMMMNEGKNLVSA  291 (387)
Q Consensus       275 ~v~~~~~s~~~~~l~s~  291 (387)
                      .+..+++.|||.++++.
T Consensus       324 rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          324 RIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             CEEEEEECTTSCEEEEE
T ss_pred             ceeEEEECCCCcEEEEE
Confidence            78999999999866654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.42  E-value=0.23  Score=38.65  Aligned_cols=180  Identities=12%  Similarity=-0.048  Sum_probs=87.4

Q ss_pred             CCEEEEecCCCcEEEEeCCCCc------eeEEccC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621           95 GSYLFTGGLSGNVYAISVPKGD------ILRSFSA-HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP  167 (387)
Q Consensus        95 ~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  167 (387)
                      ...|+....| +++.=.+..+.      ....+.. -=..+..++|+|++.+.++  .+|.++-.+.....       ..
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~-------~~   73 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHD-------ND   73 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCST-------TC
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCC-------cc
Confidence            3455555555 55555554443      1122211 1236789999999986666  66765554431100       00


Q ss_pred             Cc-cceEeee--ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE------EEEec--CCceeEEEeCCCCCe
Q 035621          168 DD-LMLQKFV--AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL------STVTF--PCAIMGLALDPTETD  236 (387)
Q Consensus       168 ~~-~~~~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------~~~~~--~~~v~~~~~~~~~~~  236 (387)
                      .. ..-..+-  +-. .-.++.|.+++  .+.++  .||.|.-++-.+...-      ..+..  =..+..+.+.|+|.+
T Consensus        74 ~W~~s~t~IG~~Gw~-~F~a~~fD~~G--~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~L  148 (236)
T 1tl2_A           74 NWMGRAKKIGNGGWN-QFQFLFFDPNG--YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYL  148 (236)
T ss_dssp             CHHHHCEEEECSCGG-GCSEEEECTTS--CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCE
T ss_pred             cccccccEecccccc-cceEEEECCCC--CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceE
Confidence            00 0001110  111 13567776663  55555  5698887775432111      11111  146789999999988


Q ss_pred             EEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCC
Q 035621          237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDG  295 (387)
Q Consensus       237 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  295 (387)
                      .++.  |+.++-.................  +-...-..-..+.|.+++.+.+..  +|
T Consensus       149 yav~--dg~lyr~~~P~~~~~~wl~~~~~--~g~~g~~~yr~l~f~~~G~l~~v~--~g  201 (236)
T 1tl2_A          149 YAVH--GQQFYKALPPVSNQDNWLARATK--IGQGGWDTFKFLFFSSVGTLFGVQ--GG  201 (236)
T ss_dssp             EEEE--TTEEEEECCCSSTTCCHHHHCEE--EESSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred             EEEe--CCcEEecCCCCCCCcccccccce--eccCCcceEEEEEECCCCcEEEEe--CC
Confidence            8777  77765433322111110000011  111222234446678877766655  55

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.34  E-value=0.084  Score=41.05  Aligned_cols=146  Identities=11%  Similarity=-0.012  Sum_probs=79.0

Q ss_pred             CeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee------EEcc--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621           85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL------RSFS--AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      .+..++|+|+|.+.++  .+|.++-.+..+.+..      ..+-  +.. ...++.|.|+|.+.++  .||.|+-++-.+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            5679999999886555  6788877776553221      1111  111 1478999999987777  569887665411


Q ss_pred             ccccCCCCCCCCc--cceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCc------EEEEEe-c-CCcee
Q 035621          157 LVDEHTDDKNPDD--LMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT------HLSTVT-F-PCAIM  226 (387)
Q Consensus       157 ~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~-~-~~~v~  226 (387)
                      .       .....  .....-..--..+..|.+.|++  .+.+ .. |+.++-....+..      ....+. . -....
T Consensus       117 ~-------~~~~Wl~~a~~vg~~gw~~~~~lff~p~G--~Lya-v~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr  185 (236)
T 1tl2_A          117 S-------DTDNWIARATEVGSGGWSGFKFLFFHPNG--YLYA-VH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK  185 (236)
T ss_dssp             S-------TTCCHHHHSEEEECSSGGGEEEEEECTTS--CEEE-EE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred             C-------CCCceeccccEeccCCCCceEEEEECCCc--eEEE-Ee-CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence            0       00000  0000001111467888888874  4444 44 7775433322211      111111 1 12344


Q ss_pred             EEEeCCCCCeEEEEccCCcEEE
Q 035621          227 GLALDPTETDFFAAGSDGLIYK  248 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~dg~i~i  248 (387)
                      .+.|.+++...++.  +|.++-
T Consensus       186 ~l~f~~~G~l~~v~--~g~~Y~  205 (236)
T 1tl2_A          186 FLFFSSVGTLFGVQ--GGKFYE  205 (236)
T ss_dssp             EEEECTTSCEEEEE--TTEEEE
T ss_pred             EEEECCCCcEEEEe--CCeEEe
Confidence            56788888777776  775543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.21  E-value=0.43  Score=39.72  Aligned_cols=214  Identities=14%  Similarity=0.104  Sum_probs=97.5

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeE-eccCC-CCCceeEEEcCccceeeecc-cc-CCC----CCeEEEEEccCCCccccc
Q 035621            9 EVILTSSPEGPITAYNPSSGAILA-HFSGS-RSPRRGLTFAGKPFIAASHI-SP-TTG----SGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~~~~~~-~~-~~~----d~~v~vw~~~~~~~~~~~   80 (387)
                      .+++.|+  ..+.+||+.+++-.. .+... ...-.+++...+..+...-. .. ...    ...+..||..+++-...-
T Consensus         6 ~l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            6 LIFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            3556666  579999998877532 22211 11122333333333332210 00 001    123777888776532222


Q ss_pred             CCCCCe--eeEEeccCCCEEEEecCC--------CcEEEEeCCCCceeE--EccCCCCCeEEEEEcCCCCEEEEEeC-C-
Q 035621           81 PVPEPV--APLATTADGSYLFTGGLS--------GNVYAISVPKGDILR--SFSAHDKPVSCLKISPDGSLLISGGD-D-  146 (387)
Q Consensus        81 ~~~~~v--~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-d-  146 (387)
                      ..+.+-  .+++. -+++.++.|+.+        ..+.+||+.+.+-..  .+......-..+.  -++++++.|+. + 
T Consensus        84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~  160 (315)
T 4asc_A           84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSD  160 (315)
T ss_dssp             CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTT
T ss_pred             CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCC
Confidence            222211  12222 256667777632        368999987764322  1221122222222  35667777776 2 


Q ss_pred             ----CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC-----cEEEEeCCCCcEEE
Q 035621          147 ----GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC-----TCKFWRLLNGTHLS  217 (387)
Q Consensus       147 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~  217 (387)
                          ..+.+||+....          ...+..+......- +++.. +  +.+++.|+.++     .+.+||+.+.+-..
T Consensus       161 ~~~~~~~~~yd~~~~~----------W~~~~~~p~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFE----------WKELAPMQTARSLF-GATVH-D--GRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             SCBCCCEEEEETTTTE----------EEECCCCSSCCBSC-EEEEE-T--TEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             CcccceEEEEeCCCCe----------EEECCCCCCchhce-EEEEE-C--CEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence                457888874320          11111111111111 12222 2  36777777654     58889988764332


Q ss_pred             EEe--cCCceeEEEeCCCCCeEEEEcc
Q 035621          218 TVT--FPCAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       218 ~~~--~~~~v~~~~~~~~~~~l~~~~~  242 (387)
                      .-.  .+..-.+++.. +++.++.|+.
T Consensus       227 ~~~~p~~r~~~~~~~~-~~~l~v~GG~  252 (315)
T 4asc_A          227 FEAFPQERSSLSLVSL-VGTLYAIGGF  252 (315)
T ss_dssp             ECCCSSCCBSCEEEEE-TTEEEEEEEE
T ss_pred             CCCCCCcccceeEEEE-CCEEEEECCc
Confidence            211  11111222222 4566666665

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.19  E-value=0.45  Score=39.68  Aligned_cols=220  Identities=10%  Similarity=0.079  Sum_probs=103.3

Q ss_pred             eEEEEEccCCCccc-ccCCC-CCeeeEEeccCCCEEEEecC----CC-------cEEEEeCCCCceeEE--ccCCCCCeE
Q 035621           65 SVHLYNLWSSTPLH-NIPVP-EPVAPLATTADGSYLFTGGL----SG-------NVYAISVPKGDILRS--FSAHDKPVS  129 (387)
Q Consensus        65 ~v~vw~~~~~~~~~-~~~~~-~~v~~~~~~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~--~~~~~~~v~  129 (387)
                      .+..||..+++-.. ....+ ..........++..++.|+.    ++       .+..||..+.+-...  +........
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  104 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG  104 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence            37788887765432 11111 11222333456778888873    12       177888876653221  111111222


Q ss_pred             EEEEcCCCCEEEEEeCC-------CcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC-
Q 035621          130 CLKISPDGSLLISGGDD-------GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM-  201 (387)
Q Consensus       130 ~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-  201 (387)
                      .+.+  ++++++.|+.+       ..+.+||+...          ....+..+......- +++. .+  +.+++.|+. 
T Consensus       105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~----------~W~~~~~~p~~r~~~-~~~~-~~--~~iyv~GG~~  168 (318)
T 2woz_A          105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA----------KWSEVKNLPIKVYGH-NVIS-HN--GMIYCLGGKT  168 (318)
T ss_dssp             EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT----------EEEEECCCSSCEESC-EEEE-ET--TEEEEECCEE
T ss_pred             eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC----------CEeECCCCCCccccc-EEEE-EC--CEEEEEcCCC
Confidence            2233  56777777754       24677777321          011111110000011 1222 22  366676664 


Q ss_pred             -----CCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccC-----CcEEEEeccccccccccccceeEeec
Q 035621          202 -----DCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSD-----GLIYKGLLKYQSRQQMHKGQELVTLA  269 (387)
Q Consensus       202 -----d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~  269 (387)
                           -..+.+||+.+.+-...-.  .+..-.+++. -+++.++.|+.+     ..+.+||+.+..........      
T Consensus       169 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p------  241 (318)
T 2woz_A          169 DDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFP------  241 (318)
T ss_dssp             SSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCS------
T ss_pred             CCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCC------
Confidence                 2358999998765332211  1211122222 256677777653     34677887764432221110      


Q ss_pred             ccccccEEEEEEecCCCEEEEEeCC--------------CcEEEEECCCccEEEE
Q 035621          270 NRHDGVVVSVMMMNEGKNLVSAAED--------------GSVYIWEIEKRQVVMV  310 (387)
Q Consensus       270 ~~~~~~v~~~~~s~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~~  310 (387)
                       ........+  ..++++++.|+.+              ..+.+||+.+.+-...
T Consensus       242 -~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          242 -QERSSISLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             -SCCBSCEEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             -CcccceEEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence             111111112  2356777777654              3577888887655433

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.10  E-value=0.51  Score=40.06  Aligned_cols=93  Identities=15%  Similarity=0.154  Sum_probs=43.8

Q ss_pred             CCcEEEeeCC-CCcEEEEeCCC--Cce--eEeccCCCCCceeEEEcCccceeeeccccCCC----------CCeEEEEEc
Q 035621            7 CNEVILTSSP-EGPITAYNPSS--GAI--LAHFSGSRSPRRGLTFAGKPFIAASHISPTTG----------SGSVHLYNL   71 (387)
Q Consensus         7 ~~~~l~~~~~-dg~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----------d~~v~vw~~   71 (387)
                      ++.+++.|+. ...+.+||+.+  .+.  +..+......-.+++...+..+..     |+.          -..+.+||.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~-----GG~~~~~~~~~~~~~~v~~yd~   93 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVF-----GGIGKNSEGLTQVFNDVHKYNP   93 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEE-----CCEEECTTSCEEECCCEEEEET
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEE-----cCCCCCCCccceeeccEEEEeC
Confidence            5666666653 35688999863  322  222221111122233333333322     333          246888998


Q ss_pred             cCCCcccccCCC-CC-eeeEEeccCCCEEEEecCC
Q 035621           72 WSSTPLHNIPVP-EP-VAPLATTADGSYLFTGGLS  104 (387)
Q Consensus        72 ~~~~~~~~~~~~-~~-v~~~~~~~~~~~l~~~~~d  104 (387)
                      .+.+-...-... .+ ....+...++++++.|+.+
T Consensus        94 ~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           94 KTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             TTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             CCCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence            776433222211 22 1121222567777888754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.93  E-value=0.41  Score=42.33  Aligned_cols=119  Identities=11%  Similarity=0.137  Sum_probs=65.7

Q ss_pred             eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---------CCceeEEEeCCC---CCeEEE
Q 035621          172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---------PCAIMGLALDPT---ETDFFA  239 (387)
Q Consensus       172 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~v~~~~~~~~---~~~l~~  239 (387)
                      +..+...-.....++|.|++  +++++-...+.|++++..+++.......         ......++|+|+   +..|++
T Consensus        19 ~~~~a~~l~~P~~~a~~pdG--~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv   96 (454)
T 1cru_A           19 KKVILSNLNKPHALLWGPDN--QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (454)
T ss_dssp             EEEEECCCSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEEECCCCCceEEEEcCCC--cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence            33343334456789998874  6666654445798888665554322221         245679999996   556655


Q ss_pred             Ecc-------------CCcEEEEeccccccccccccceeEe-ecccccccEEEEEEecCCCEEEEEeC
Q 035621          240 AGS-------------DGLIYKGLLKYQSRQQMHKGQELVT-LANRHDGVVVSVMMMNEGKNLVSAAE  293 (387)
Q Consensus       240 ~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~  293 (387)
                      +..             ...|..++......... ....+.. +..........|+|.|||.++++.+.
T Consensus        97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~-~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A           97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLE-KPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             EEEEECTTC--CCSCEEEEEEEEEEETTTTEEE-EEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             EEeccccCCCccccccccEEEEEEECCCCCCcC-CcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence            543             23566665543211100 0111221 11121234789999999997776543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.89  E-value=0.61  Score=38.62  Aligned_cols=179  Identities=11%  Similarity=0.093  Sum_probs=96.0

Q ss_pred             EEeccCCCEEEEecCC--------------CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEE
Q 035621           89 LATTADGSYLFTGGLS--------------GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG--DDGVIATV  152 (387)
Q Consensus        89 ~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iw  152 (387)
                      --++++|++|+.....              ..|+..++..++... +..  ..  +..|++++++|+-..  .++.-.||
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence            3457788888766532              367777776665333 221  11  236777888888765  34444444


Q ss_pred             eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEE-EEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeC
Q 035621          153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIII-SCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALD  231 (387)
Q Consensus       153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~  231 (387)
                      .+..           .+.....+..+..    ..+.+.+  +.|+ +......|...++..+.....+.  .... ..++
T Consensus       133 ~~~~-----------dGs~~~~lt~~~~----~~~~~~g--~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~  192 (302)
T 3s25_A          133 RIRI-----------DGEEKKKIKNHYL----FTCNTSD--RYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVV  192 (302)
T ss_dssp             EEET-----------TSCCCEEEESSCC----CCSEEET--TEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEE
T ss_pred             EEEC-----------CCCCeEEEeCCCc----eEeeEEC--CEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceee
Confidence            3310           2222333333322    3445664  4444 43336788888887665443333  2222 3456


Q ss_pred             CCCCeEEEEccC--CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe--CCCcEEEEECCCcc
Q 035621          232 PTETDFFAAGSD--GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA--EDGSVYIWEIEKRQ  306 (387)
Q Consensus       232 ~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~  306 (387)
                      |++.+|+-....  ..|..-++......         .+.   ...+  ..|+|++++|.-+.  ..+.|..-+++...
T Consensus       193 P~g~~iy~t~~~~~~~I~~~~ldG~~~~---------~Lt---~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          193 LDDTNVYYMDVNRDNAIVHVNINNPNPV---------VLT---EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEECSSSCCCE---------ECS---CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred             ecCCEEEEEEcCCCcEEEEEECCCCCeE---------EEe---CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence            888888876543  35555555542211         111   1122  23778888877543  34567777776543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.76  E-value=0.76  Score=38.81  Aligned_cols=233  Identities=15%  Similarity=0.097  Sum_probs=121.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCce--eEec----cCCCCCceeEEEcCc----cceeeeccccCCCCCeEEEEEc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAI--LAHF----SGSRSPRRGLTFAGK----PFIAASHISPTTGSGSVHLYNL   71 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~----~~~~~~v~~~~~~~~----~~~~~~~~~~~~~d~~v~vw~~   71 (387)
                      |+|.|||+++++-...|.|++++..+++.  +..+    .........|+++|+    +.+...  .+...++.|.-|.+
T Consensus        37 ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~--yt~~~~~~v~R~~~  114 (347)
T 3das_A           37 LAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY--FTSASDNRIVRMLY  114 (347)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE--EECSSSEEEEEEEB
T ss_pred             EEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE--EecCCCCEEEEEEe
Confidence            57899999888876689999998765553  2222    123445789999984    222211  11234556666666


Q ss_pred             cCCC----cc-------cccC--CCCCeeeEEeccCCCEEEEecC-------------CCcEEEEeCCCC---------c
Q 035621           72 WSST----PL-------HNIP--VPEPVAPLATTADGSYLFTGGL-------------SGNVYAISVPKG---------D  116 (387)
Q Consensus        72 ~~~~----~~-------~~~~--~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~---------~  116 (387)
                      ..+.    .+       ..+.  .......+.|.|||.+.++.+.             .|.|.-++....         .
T Consensus       115 ~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~  194 (347)
T 3das_A          115 DEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGS  194 (347)
T ss_dssp             CTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTC
T ss_pred             CCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCC
Confidence            5421    10       0111  1123567999999987766442             355555565322         1


Q ss_pred             eeEEccCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCcc----cccCCCC--CCCCccceEeeeccCCCeEEEEEee
Q 035621          117 ILRSFSAHDKPVSCLKISPDGSLLISG-GDDGVIATVPIFQL----VDEHTDD--KNPDDLMLQKFVAHNDSVTAITCCI  189 (387)
Q Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~  189 (387)
                      .+.. .+|. ....++|+|++.+.++= +.|+.=.+--+...    |......  ......++..+..+......++|..
T Consensus       195 ~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~  272 (347)
T 3das_A          195 PVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE  272 (347)
T ss_dssp             CEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET
T ss_pred             eEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc
Confidence            1111 2444 34689999987755443 22322222222111    0000000  0011223344433333556677652


Q ss_pred             CCCCceEEEEeCCCcEEEEeCCCCcEE---EEE-e-cCCceeEEEeCCCCCeEEEEc
Q 035621          190 GSFNSIIISCSMDCTCKFWRLLNGTHL---STV-T-FPCAIMGLALDPTETDFFAAG  241 (387)
Q Consensus       190 ~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~-~-~~~~v~~~~~~~~~~~l~~~~  241 (387)
                         +.+++..-..+.|....+......   ..+ . ....+..++..|||.++++..
T Consensus       273 ---g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          273 ---GSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             ---TEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             ---CceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence               366666666667766666544321   112 1 235678888888886665544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.46  E-value=0.93  Score=37.71  Aligned_cols=137  Identities=10%  Similarity=0.066  Sum_probs=66.5

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEe-ccC-CCCCceeEEEcCccceeeeccccCCC----C-------CeEEEEEccCCC
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAH-FSG-SRSPRRGLTFAGKPFIAASHISPTTG----S-------GSVHLYNLWSST   75 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~----d-------~~v~vw~~~~~~   75 (387)
                      .+++.|+.  .+..||+.+.+.... +.. ....-.+++...+..+..     |+.    +       ..+..||..+.+
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~-----GG~~~~~~~~~~~~~~~~~~~d~~~~~   89 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVV-----GGLYVDEENKDQPLQSYFFQLDNVSSE   89 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEE-----ESSCC-------CCCBEEEEEETTTTE
T ss_pred             hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEE-----CCcccCccccCCCccccEEEEeCCCCc
Confidence            45666664  489999988775431 111 111122333333333332     221    1       127778877664


Q ss_pred             cccccC--CCCCeeeEEeccCCCEEEEecCC-------CcEEEEeCCCCceeEE--ccCCCCCeEEEEEcCCCCEEEEEe
Q 035621           76 PLHNIP--VPEPVAPLATTADGSYLFTGGLS-------GNVYAISVPKGDILRS--FSAHDKPVSCLKISPDGSLLISGG  144 (387)
Q Consensus        76 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~  144 (387)
                      -...-.  .+..-.+++. -+++.++.|+.+       ..+.+||+.+.+-...  +......-..+.  .++++++.|+
T Consensus        90 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG  166 (318)
T 2woz_A           90 WVGLPPLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGG  166 (318)
T ss_dssp             EEECSCBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECC
T ss_pred             EEECCCCCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcC
Confidence            332222  2211122222 256677777753       2588899877653322  111111112222  3666777776


Q ss_pred             CC------CcEEEEeCC
Q 035621          145 DD------GVIATVPIF  155 (387)
Q Consensus       145 ~d------g~i~iwd~~  155 (387)
                      .+      ..+.+||+.
T Consensus       167 ~~~~~~~~~~~~~yd~~  183 (318)
T 2woz_A          167 KTDDKKCTNRVFIYNPK  183 (318)
T ss_dssp             EESSSCBCCCEEEEETT
T ss_pred             CCCCCCccceEEEEcCC
Confidence            42      358888874

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.32  E-value=2  Score=40.79  Aligned_cols=264  Identities=15%  Similarity=0.123  Sum_probs=134.0

Q ss_pred             EEeeCCCCcEEEEeCCCCceeEec---c-CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc-cC----
Q 035621           11 ILTSSPEGPITAYNPSSGAILAHF---S-GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-IP----   81 (387)
Q Consensus        11 l~~~~~dg~i~iwd~~~~~~~~~~---~-~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~-~~----   81 (387)
                      |..|+.+ -+..+|..+++.....   . .....|.++....++.+-.     ++.. -+..++..+++.... ..    
T Consensus       115 lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-----gt~~-Gl~~~~~~~~~~~~~~~~~~~~  187 (758)
T 3ott_A          115 LWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-----GTYN-GLCRYIPSNGKFEGIPLPVHSS  187 (758)
T ss_dssp             EEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-----EETT-EEEEEETTTTEEEEECCCCCTT
T ss_pred             EEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-----EeCC-CHhhCccCCCceEEecCCCccc
Confidence            4444444 4777887665543210   0 1123467777665433322     2233 466777655432211 11    


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                       ....|.++...+++..|..|+. +-+..+|..+++...........|.++...+++.+.+ |+.+ -+.+++...    
T Consensus       188 ~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~----  260 (758)
T 3ott_A          188 QSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDT----  260 (758)
T ss_dssp             CSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTT----
T ss_pred             cccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCC----
Confidence             1124778877777776555654 4588899877654322111234588888887776544 4444 577777622    


Q ss_pred             CCCCCCCCccceEeee--------ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--------cCCc
Q 035621          161 HTDDKNPDDLMLQKFV--------AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--------FPCA  224 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~  224 (387)
                              . ....+.        .....|.++.....  +. |-.|+..| +.++....  ....+.        ....
T Consensus       261 --------~-~~~~~~~~~~~~~~l~~~~i~~i~~D~~--g~-lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~  325 (758)
T 3ott_A          261 --------T-PLQHIIHDSRNIQSLTNNIIWNIFADQE--HN-IWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQ  325 (758)
T ss_dssp             --------S-CCEEECCCTTCTTSCSCSCEEEEEECTT--CC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCB
T ss_pred             --------C-cEEEEEcCCCCcCcCCcCeEEEEEEcCC--CC-EEEEeCCc-ccccccCC--ceeEEecccCCCCCCCce
Confidence                    1 111111        12235777754433  34 44455556 55443321  222222        1246


Q ss_pred             eeEEEeCCCCCeEEEEccCCcEEEEeccccccccc--cccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621          225 IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM--HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       225 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  302 (387)
                      |.++....+|...+. +.+| +..++...+.....  .......  ..-....|.++.-.++|++.+ |+ ++-|..||.
T Consensus       326 v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~  399 (758)
T 3ott_A          326 FYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYRMGDKT--YPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDY  399 (758)
T ss_dssp             EEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEECTTCSS--SCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEET
T ss_pred             EEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEeccCCcC--CCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCc
Confidence            888888877765554 4444 55565443211000  0000000  001234688888887776544 44 456999998


Q ss_pred             CCccEEE
Q 035621          303 EKRQVVM  309 (387)
Q Consensus       303 ~~~~~~~  309 (387)
                      .+++...
T Consensus       400 ~~~~~~~  406 (758)
T 3ott_A          400 ATRQFIH  406 (758)
T ss_dssp             TTTEEEE
T ss_pred             CCCcEEE
Confidence            8876543

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=95.29  E-value=1.1  Score=37.36  Aligned_cols=205  Identities=9%  Similarity=0.065  Sum_probs=115.6

Q ss_pred             cCCCEEEEecCCCcEEEEeCCCCce-------eE--EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621           93 ADGSYLFTGGLSGNVYAISVPKGDI-------LR--SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        93 ~~~~~l~~~~~dg~i~i~d~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      ++..++++.+.+|.|+-..+..-+.       +.  .++. ...+..+........++..+..|.++-+...+.......
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            4566788889999998876643221       11  1222 234445544445567888888898877766432111100


Q ss_pred             CCCCCccc---eEeeeccCCCeEEEEEeeC-CCCceEEEEeCCCcEEEEeCCCC-------cEEEEEecCCceeEEEeCC
Q 035621          164 DKNPDDLM---LQKFVAHNDSVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNG-------THLSTVTFPCAIMGLALDP  232 (387)
Q Consensus       164 ~~~~~~~~---~~~~~~~~~~i~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~v~~~~~~~  232 (387)
                         ..+.+   ...+. ....|..+...++ .....++..+..|.++-..+...       .....+.....+..+....
T Consensus        85 ---~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~  160 (312)
T 1suu_A           85 ---SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF  160 (312)
T ss_dssp             ------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEEC
T ss_pred             ---CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeC
Confidence               11111   11122 2234555443321 12467888899999998877432       2222222345566666555


Q ss_pred             CCCeEEEEccCCcEEEEeccccccc-cccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          233 TETDFFAAGSDGLIYKGLLKYQSRQ-QMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       233 ~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      .+..++..+.+|....+....-... ....+.....+.  ....|..+...+++..+++.+..|..+..++..
T Consensus       161 ~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~--~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          161 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK--EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC--TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC--CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            5678889999999998887653221 112233333332  245566666655667788889999999988754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.17  E-value=2.1  Score=40.18  Aligned_cols=201  Identities=11%  Similarity=0.074  Sum_probs=99.8

Q ss_pred             cCCCEEEEecCC----CcEEEEeCCCCceeEEc--------cCCCCCeEEEEEcCCCCEEEEEeCCC------cEEEEeC
Q 035621           93 ADGSYLFTGGLS----GNVYAISVPKGDILRSF--------SAHDKPVSCLKISPDGSLLISGGDDG------VIATVPI  154 (387)
Q Consensus        93 ~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iwd~  154 (387)
                      .++..++.|+.+    ..+.+||+.+.+-...-        ......-..+.+..+++.++.|+.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            466777777753    46889998776533222        11112223333322677778877543      4677777


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC--cEEEEeCCCCcEEEEEe-----cC-Ccee
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC--TCKFWRLLNGTHLSTVT-----FP-CAIM  226 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~-----~~-~~v~  226 (387)
                      ...          ....+..+......- +.+...+  +.+++.|+.++  .+.+||..+.+-...-.     .+ ....
T Consensus       476 ~t~----------~W~~~~~~p~~R~~h-~~~~~~~--~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~  542 (695)
T 2zwa_A          476 KTR----------EWSMIKSLSHTRFRH-SACSLPD--GNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSA  542 (695)
T ss_dssp             TTT----------EEEECCCCSBCCBSC-EEEECTT--SCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSC
T ss_pred             CCC----------cEEECCCCCCCcccc-eEEEEcC--CEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccccee
Confidence            331          111111111111111 1222122  47888887654  68999998765322111     11 1223


Q ss_pred             EEEeCCC-CCeEEEEcc--C-----CcEEEEeccccccccccccce-eEeecccccccEEEEEEecCCCEEEEEeC----
Q 035621          227 GLALDPT-ETDFFAAGS--D-----GLIYKGLLKYQSRQQMHKGQE-LVTLANRHDGVVVSVMMMNEGKNLVSAAE----  293 (387)
Q Consensus       227 ~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----  293 (387)
                      .+.+..+ ++.++.|+.  +     ..+.+||+.+... ....... +........... +++...++++++.||.    
T Consensus       543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w-~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~  620 (695)
T 2zwa_A          543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENA-TEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSG  620 (695)
T ss_dssp             EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCS-SCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSC
T ss_pred             EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCcc-ccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCC
Confidence            3555555 566677765  2     3588889887542 0000000 000000011111 2223333677888874    


Q ss_pred             ----CCcEEEEECCCccEE
Q 035621          294 ----DGSVYIWEIEKRQVV  308 (387)
Q Consensus       294 ----dg~i~iwd~~~~~~~  308 (387)
                          ...|.+||+.+++-.
T Consensus       621 ~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          621 LFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             CCCTTTSEEEEETTTTEEE
T ss_pred             CCCCCCeEEEEECCCCeEE
Confidence                346999999887654

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=95.07  E-value=1.4  Score=37.56  Aligned_cols=207  Identities=16%  Similarity=0.109  Sum_probs=116.5

Q ss_pred             eccCCCEEEEecCCCcEEEEeCCC---------CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           91 TTADGSYLFTGGLSGNVYAISVPK---------GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        91 ~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                      +-|+..++++.+.+|.|+--.+..         +..-..++. ...+..+........++..+..|.++-+...+.....
T Consensus         3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~   81 (370)
T 3l6v_A            3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG   81 (370)
T ss_dssp             CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred             cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence            346778899999999998765421         122233432 4456555555555677777888887766653322211


Q ss_pred             CCCCCCCccceE---eeeccCCCeEEEEEeeC-CCCceEEEEeCCCcEEEEeCCCCc-------EEEEEecCCceeEEEe
Q 035621          162 TDDKNPDDLMLQ---KFVAHNDSVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNGT-------HLSTVTFPCAIMGLAL  230 (387)
Q Consensus       162 ~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~v~~~~~  230 (387)
                      .   ...+.++.   .+. ....|.++....+ ..+.+|+.++..|.++-..+....       ....+.....+..+..
T Consensus        82 r---~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~  157 (370)
T 3l6v_A           82 S---NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVAL  157 (370)
T ss_dssp             T---TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEE
T ss_pred             c---ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEE
Confidence            1   11222221   122 2345655544322 224689999999999988764321       1112223445555555


Q ss_pred             CCCCCeEEEEccCCcEEEEeccccccccc-cccceeEeecccccccEEEEEEec--------------------------
Q 035621          231 DPTETDFFAAGSDGLIYKGLLKYQSRQQM-HKGQELVTLANRHDGVVVSVMMMN--------------------------  283 (387)
Q Consensus       231 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~--------------------------  283 (387)
                      ......++..+.+|.+..+....-..... ..+.....+  .....|.++...+                          
T Consensus       158 ~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L--~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~  235 (370)
T 3l6v_A          158 TDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRL--AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEP  235 (370)
T ss_dssp             ECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--CTTCCEEEEEEECCC------------------------
T ss_pred             eCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEe--CCCCEEEEEEEeccccccccccccccccccccccccccc
Confidence            55666788888899888887654222111 112222222  2234455554443                          


Q ss_pred             ---------CCCEEEEEeCCCcEEEEECCC
Q 035621          284 ---------EGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       284 ---------~~~~l~s~~~dg~i~iwd~~~  304 (387)
                               ++..+++.+..|..+...+..
T Consensus       236 ~~~~~~~~~~~~~il~vTe~G~gKrt~~~e  265 (370)
T 3l6v_A          236 AVIDVADNGDVAYILTATENGYGKRTPLAE  265 (370)
T ss_dssp             -----------CEEEEEETTSEEEEEEGGG
T ss_pred             cccccccccCCceEEEeeCCCCEEEEEHHH
Confidence                     456889999999999888754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.80  E-value=2  Score=37.95  Aligned_cols=108  Identities=13%  Similarity=0.098  Sum_probs=59.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee------ccCCCeEEEEEeeCC--CCceE
Q 035621          125 DKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV------AHNDSVTAITCCIGS--FNSII  196 (387)
Q Consensus       125 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~--~~~~l  196 (387)
                      -.....|+|.|+|+++++-...+.|++++....          ....+..+.      ........|+++|+-  ++.+.
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g----------~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY   95 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESG----------SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY   95 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC----------CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCC----------cEeEEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence            345689999999987666544456887765210          111111111      124567789999851  12444


Q ss_pred             EEEeC------------CCcEEEEeCCCC--c-----EEE-EEe--cCCceeEEEeCCCCCeEEEEcc
Q 035621          197 ISCSM------------DCTCKFWRLLNG--T-----HLS-TVT--FPCAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       197 ~s~~~------------d~~i~iwd~~~~--~-----~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~  242 (387)
                      ++-+.            ...|.-|++...  .     .+. .+.  .......++|.|||.++++.+.
T Consensus        96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A           96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence            44332            124555554322  1     111 122  1245789999999987776543

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=94.63  E-value=1.7  Score=36.38  Aligned_cols=204  Identities=12%  Similarity=0.110  Sum_probs=112.6

Q ss_pred             CEEEEecCCCcEEEEeCCCC-------ceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621           96 SYLFTGGLSGNVYAISVPKG-------DILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP  167 (387)
Q Consensus        96 ~~l~~~~~dg~i~i~d~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  167 (387)
                      ..+++.+.+|.|+--.+.+.       +-+..+. .....+..+........++.-+..|.++.....+......   ..
T Consensus         4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r---~~   80 (327)
T 3uc1_A            4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASR---TA   80 (327)
T ss_dssp             EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCS---SS
T ss_pred             cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCc---cC
Confidence            45667778888876653211       1111111 1233455554444555677677778776655433322110   11


Q ss_pred             CccceEeee--ccCCCeEEEEEeeC-CCCceEEEEeCCCcEEEEeCCCCc-------EEEEEecCCceeEEEeCCCCCeE
Q 035621          168 DDLMLQKFV--AHNDSVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNGT-------HLSTVTFPCAIMGLALDPTETDF  237 (387)
Q Consensus       168 ~~~~~~~~~--~~~~~i~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l  237 (387)
                      .+.++..+-  .....|..+...++ .+..+++..+.+|.++-..+....       ....+.....+..+........+
T Consensus        81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~i  160 (327)
T 3uc1_A           81 RGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDL  160 (327)
T ss_dssp             CCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEE
T ss_pred             CCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEE
Confidence            222221111  12345555544332 235789999999999988765422       11122234556666555666788


Q ss_pred             EEEccCCcEEEEecc--ccccc-cccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          238 FAAGSDGLIYKGLLK--YQSRQ-QMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       238 ~~~~~dg~i~i~d~~--~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      +..+..|.++.+...  .-... ....+.....+  .....|.++...+++.+|+..+..|.++.-.+..
T Consensus       161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L--~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e  228 (327)
T 3uc1_A          161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRF--NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE  228 (327)
T ss_dssp             EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC--CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             EEEECCCeEEEEECcccccCcCCcCCCCeeeecC--CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence            889999999988876  32111 11122222222  2345677777666677899999999999887654

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=94.53  E-value=1.6  Score=35.57  Aligned_cols=205  Identities=14%  Similarity=0.156  Sum_probs=106.3

Q ss_pred             eeeEEeccCCCEEEEecCCCcEEE---EeCCCCceeEEccCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCcccccC
Q 035621           86 VAPLATTADGSYLFTGGLSGNVYA---ISVPKGDILRSFSAHDKPVSCLKISP-DGSLLISGGDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        86 v~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~  161 (387)
                      +..+.......+|+.-+..|.++-   |+++.+.....+. ....|..+.... +..+++..+.+|.++-..+.... ..
T Consensus        26 ~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~  103 (276)
T 3no0_A           26 VVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YK  103 (276)
T ss_dssp             EEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TC
T ss_pred             EEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hh
Confidence            333333333344555555665543   3333221111133 245566654421 46789999999999998874432 11


Q ss_pred             CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC---------CcEEEEEecCCceeEEEeCC
Q 035621          162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN---------GTHLSTVTFPCAIMGLALDP  232 (387)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~v~~~~~~~  232 (387)
                           ..+.....+.. .+.+..+.....  ...++..+..|.+..+....         |.....+.....+..+...+
T Consensus       104 -----~~G~~~i~lke-gD~l~~~~~~~~--~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~  175 (276)
T 3no0_A          104 -----AQGMPIIKLTE-GDEVVSIASSVD--ETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN  175 (276)
T ss_dssp             -----STTEECSCCCT-TCCEEEEEECCS--SCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES
T ss_pred             -----cCCeEEEecCC-CCEEEEEEEeCC--CCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC
Confidence                 12222222332 344555444433  35777788889888776532         11222233345666666556


Q ss_pred             CCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEE--EECC
Q 035621          233 TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYI--WEIE  303 (387)
Q Consensus       233 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i--wd~~  303 (387)
                      ++..++..+..|.++...+......... +......  ...+.+..+....+...++..+.+|.+..  ++..
T Consensus       176 ~~~~ll~~T~~G~~kr~~~~e~~~~~R~-gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~  245 (276)
T 3no0_A          176 GEPYLLVITAKGRVKKISHEEIPKTNRG-VKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK  245 (276)
T ss_dssp             SCSEEEEEETTSCEEEEEGGGSCCCCTT-CCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred             CCCEEEEEeCCCcEEEeEHHHcccCCCC-CcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence            6778999999999998887653322111 1111111  12233444433333345555566676666  6554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.48  E-value=3.4  Score=39.23  Aligned_cols=258  Identities=11%  Similarity=0.082  Sum_probs=132.2

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc-----cCCCC
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN-----IPVPE   84 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~-----~~~~~   84 (387)
                      .|..|+.+| +..||..+.+...........|.++....+....      ++.+ -+..+|..+++....     -....
T Consensus        75 ~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWi------gt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~  146 (758)
T 3ott_A           75 YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWL------GALN-GLYTYQLQSRKLTSFDTRRNGLPNN  146 (758)
T ss_dssp             EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEE------EETT-EEEEEETTTCCEEEECHHHHCCSCS
T ss_pred             cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEE------EcCC-cceeEeCCCCeEEEeccCCCCcCCC
Confidence            455555555 7889987765432111122346665543322222      2333 577888766543221     01234


Q ss_pred             CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc-cC----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccc
Q 035621           85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF-SA----HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVD  159 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  159 (387)
                      .|.++....+|.+.+ |+.+| +..++..+++..... ..    ....|.++...+++..|..|+. +-+..+|..    
T Consensus       147 ~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~----  219 (758)
T 3ott_A          147 TIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPS----  219 (758)
T ss_dssp             CEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETT----
T ss_pred             eEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCC----
Confidence            678888877777555 44444 888887766543211 11    1224888888777765555654 457777762    


Q ss_pred             cCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---------CCceeEEE
Q 035621          160 EHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---------PCAIMGLA  229 (387)
Q Consensus       160 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~v~~~~  229 (387)
                              ... ...+. .....|.++....+  +.+ ..|+.+ -+.+++..+.+.. .+.+         ...|.++.
T Consensus       220 --------~~~-~~~~~~l~~~~i~~i~~d~~--g~l-WigT~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~  285 (758)
T 3ott_A          220 --------TGQ-IKQTEAFHNNSIKSLALDGN--GDL-LAGTDN-GLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIF  285 (758)
T ss_dssp             --------TTE-EEEEEEEEEEEEEEEEECTT--CCE-EEEETT-EEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEE
T ss_pred             --------CCe-EEeccCCCCCeEEEEEEcCC--CCE-EEEeCC-ceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEE
Confidence                    111 11111 11234666654433  344 444544 4888887765432 3321         23588888


Q ss_pred             eCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          230 LDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       230 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      ...+|. |.+|+..| +.++.... ... .......  ........|.++.-..+|.+.+ |+.+| +..++..+
T Consensus       286 ~D~~g~-lWiGT~~G-l~~~~~~~-~~~-~~~~~~~--~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~  352 (758)
T 3ott_A          286 ADQEHN-IWLGTDYG-ISLSRYNS-ALQ-FIPISQI--TGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPA  352 (758)
T ss_dssp             ECTTCC-EEEEESSS-EEEECCCC--CE-EEEHHHH--SCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTT
T ss_pred             EcCCCC-EEEEeCCc-ccccccCC-cee-EEecccC--CCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccc
Confidence            887775 44555556 54443211 000 0000000  0001234688888877776554 44554 66666554

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=93.89  E-value=2.4  Score=35.16  Aligned_cols=205  Identities=12%  Similarity=0.113  Sum_probs=111.7

Q ss_pred             cCCCEEEEecCCCcEEEEeCCCCceeE---------EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCC
Q 035621           93 ADGSYLFTGGLSGNVYAISVPKGDILR---------SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTD  163 (387)
Q Consensus        93 ~~~~~l~~~~~dg~i~i~d~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  163 (387)
                      |+...+++.+.+|.|+--.+.+-+...         .++. ...+..+........++..+..|.++-+...+...... 
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~-   78 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR-   78 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCS-
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCC-
Confidence            345677888899998877664422111         1222 23344444444556677777888876666543322211 


Q ss_pred             CCCCCccceE---eeeccCCCeEEEEEeeC-CCCceEEEEeCCCcEEEEeCCCCc-----EEE--EEecCCceeEEEeCC
Q 035621          164 DKNPDDLMLQ---KFVAHNDSVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNGT-----HLS--TVTFPCAIMGLALDP  232 (387)
Q Consensus       164 ~~~~~~~~~~---~~~~~~~~i~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~-----~~~--~~~~~~~v~~~~~~~  232 (387)
                        ...+.++.   .+. ....|.++...++ .++.+++..+..|.++-..+....     -+.  .+.....+..+....
T Consensus        79 --~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~  155 (307)
T 1zi0_A           79 --GARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTS  155 (307)
T ss_dssp             --SSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEEC
T ss_pred             --CCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeC
Confidence              11222211   122 3345655543321 224678889999999988764211     111  122335555555555


Q ss_pred             CCCeEEEEccCCcEEEEecccccccc-ccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          233 TETDFFAAGSDGLIYKGLLKYQSRQQ-MHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       233 ~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      ....++..+.+|.+..+....-.... ...+.....+  .....|.++...+++..+++.+..|.++-.++..
T Consensus       156 ~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L--~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e  226 (307)
T 1zi0_A          156 GEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL--GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE  226 (307)
T ss_dssp             TTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred             CCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe--CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence            56678888899998888775432221 1112222222  2345566766555566788889999999888743

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=93.85  E-value=2.5  Score=35.34  Aligned_cols=212  Identities=14%  Similarity=0.203  Sum_probs=113.9

Q ss_pred             CCeeeEEeccCCCEEEEecCCCcEEE---EeCCCC------ceeEEc-c-CCCCCeEEEE-EcC--CCCEEEEEeCCCcE
Q 035621           84 EPVAPLATTADGSYLFTGGLSGNVYA---ISVPKG------DILRSF-S-AHDKPVSCLK-ISP--DGSLLISGGDDGVI  149 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~------~~~~~~-~-~~~~~v~~~~-~~~--~~~~l~~~~~dg~i  149 (387)
                      +.+..+........|+.-+..|.++-   |+++..      .++..+ . .....|..+. ..+  +..+++..+.+|.+
T Consensus        42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~i  121 (327)
T 3uc1_A           42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLV  121 (327)
T ss_dssp             GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred             CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence            44555554455556666666776554   444432      222111 1 1234555554 432  56799999999999


Q ss_pred             EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCC--CC---------cEEEE
Q 035621          150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLL--NG---------THLST  218 (387)
Q Consensus       150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~---------~~~~~  218 (387)
                      +--.+.......     ..+.....+.. .+.+..+......  ..++..+..|.+..+...  .-         .....
T Consensus       122 Kr~~l~~~~~~~-----r~G~~~i~lke-~D~lv~~~~~~~~--d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~  193 (327)
T 3uc1_A          122 KKSKLTDFDSNR-----SGGIVAVNLRD-NDELVGAVLCSAG--DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMR  193 (327)
T ss_dssp             EEEEGGGGCCCC-----SSCEESCBCCT-TCCEEEEEEECTT--CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSC
T ss_pred             EEeEHHHhhccc-----cCceEEEEECC-CCEEEEEEEecCC--CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeec
Confidence            998875432221     11222223333 3445555444433  567777888988877765  21         11112


Q ss_pred             EecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc-cccceeEeecccccccEEEEEEecCCCEEEEEeCCCcE
Q 035621          219 VTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSV  297 (387)
Q Consensus       219 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  297 (387)
                      +.....|.++...+.+.+++..+..|.++.-.+........ ..+.....+. .-.+.+..+....+...++..+.+|.+
T Consensus       194 L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~-~~~d~lv~~~~~~~~~~i~l~T~~G~~  272 (327)
T 3uc1_A          194 FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD-RRRGRLVGALIVDDDSELYAVTSGGGV  272 (327)
T ss_dssp             CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCC-TTTCSEEEEEEECTTCEEEEEEGGGCE
T ss_pred             CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEec-CCCCeEEEEEEeCCCccEEEEcCCCeE
Confidence            23445677777767777899999999998887765332211 1111111111 112334444444444455556667776


Q ss_pred             EEEECCC
Q 035621          298 YIWEIEK  304 (387)
Q Consensus       298 ~iwd~~~  304 (387)
                      .-++...
T Consensus       273 ir~~~~~  279 (327)
T 3uc1_A          273 IRTAARQ  279 (327)
T ss_dssp             EEEEGGG
T ss_pred             EEEehhh
Confidence            6666543

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=93.32  E-value=3.1  Score=34.72  Aligned_cols=205  Identities=13%  Similarity=0.074  Sum_probs=114.7

Q ss_pred             cCCCEEEEecCCCcEEEEeCCCC----ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCC
Q 035621           93 ADGSYLFTGGLSGNVYAISVPKG----DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPD  168 (387)
Q Consensus        93 ~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  168 (387)
                      |+...+++.+.+|.|+--.+..-    ..-..++. ...+..+........++..+..|.++-+...+......   ...
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r---~a~   78 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW---KDL   78 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT---TSC
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCC---CCC
Confidence            55667888889998887755311    11112332 23444444444556777778888877666543322211   012


Q ss_pred             ccceE---eeeccCCCeEEEEEeeC-CCCceEEEEeCCCcEEEEeCCCC------cEEEE--EecCCceeEEEeCCCCCe
Q 035621          169 DLMLQ---KFVAHNDSVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNG------THLST--VTFPCAIMGLALDPTETD  236 (387)
Q Consensus       169 ~~~~~---~~~~~~~~i~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~------~~~~~--~~~~~~v~~~~~~~~~~~  236 (387)
                      +.++.   .+. ....|.++...++ .++.+++..+.+|.++-..+...      .-+..  +.....+..+........
T Consensus        79 G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~  157 (323)
T 1wp5_A           79 GQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNE  157 (323)
T ss_dssp             CEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSE
T ss_pred             CcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCE
Confidence            22111   122 2334555433332 12467888999999998877421      12222  223455655555556677


Q ss_pred             EEEEccCCcEEEEecccccccc-ccccceeEeecccccccEEEEEEecCCC-EEEEEeCCCcEEEEECCC
Q 035621          237 FFAAGSDGLIYKGLLKYQSRQQ-MHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       237 l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~  304 (387)
                      ++..+.+|.+..+....-.... ...+.....+  .....|.++...+++. .|++.+..|..+..++..
T Consensus       158 i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L--~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e  225 (323)
T 1wp5_A          158 LFLVTHNGYALWFDESEVSIVGVRAAGVKGMNL--KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE  225 (323)
T ss_dssp             EEEEETTSEEEEEEGGGSCBCCSSCCCEECCCC--CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             EEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEe--CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence            8889999999888876532211 1222222222  2345566665544455 788888999988887755

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.75  E-value=4  Score=34.44  Aligned_cols=237  Identities=10%  Similarity=0.050  Sum_probs=118.3

Q ss_pred             CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce--eEEc----cCCCCCeEEEEEcCC---CCEEEEE---eCCCcEEE
Q 035621           84 EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI--LRSF----SAHDKPVSCLKISPD---GSLLISG---GDDGVIAT  151 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~l~~~---~~dg~i~i  151 (387)
                      .....++|.|+|.++++--..|.|++++..+++.  +..+    .........|+++|+   +..|...   ..++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            4578899999999777765589999998765553  2222    123567899999995   3444432   23445555


Q ss_pred             EeCCcccccCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEeC-------------CCcEEEEeCCCC----
Q 035621          152 VPIFQLVDEHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCSM-------------DCTCKFWRLLNG----  213 (387)
Q Consensus       152 wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~-------------d~~i~iwd~~~~----  213 (387)
                      |.+..... ...........+..+. .....-..|.|.|++  .++++.+.             .|.|.-.+....    
T Consensus       112 ~~~~~~~~-~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG--~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~  188 (347)
T 3das_A          112 MLYDEKKP-SGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK--MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG  188 (347)
T ss_dssp             EEBCTTSC-TTCCBCCCEEEEEEECCCSSCCCCCEEECTTS--CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred             EEeCCCCc-ccccCCCcEEEEEcCCCCCCccCccccCCCCC--CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence            55421000 0000001111122222 112234568888874  66666542             234443443311    


Q ss_pred             -----cEEEEEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccc----------cccceeEeecccccccEE
Q 035621          214 -----THLSTVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQM----------HKGQELVTLANRHDGVVV  277 (387)
Q Consensus       214 -----~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~----------~~~~~~~~~~~~~~~~v~  277 (387)
                           ..+... .......++|+|+|.++++-. .++.=.+--+..+...-.          .....+..+ ..+.....
T Consensus       189 nPf~~~~i~a~-G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~-~~~~~ap~  266 (347)
T 3das_A          189 NPFPGSPVYSY-GHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQW-STDEASPS  266 (347)
T ss_dssp             CSSTTCCEEEB-CCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEE-CTTTCCEE
T ss_pred             CCCCCCeEEee-CCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEec-CCCCCCCc
Confidence                 112111 224567899999876555432 233333333332221100          001112222 11224567


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCccEE---EEeecccCCCceeEEEEe
Q 035621          278 SVMMMNEGKNLVSAAEDGSVYIWEIEKRQVV---MVLKNELAGSISEMVIAT  326 (387)
Q Consensus       278 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~  326 (387)
                      .++|. +|..+...-..+.|....++....+   ..+-....+.+..|.+.+
T Consensus       267 G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p  317 (347)
T 3das_A          267 GIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG  317 (347)
T ss_dssp             EEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE
T ss_pred             ceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC
Confidence            88886 4666666666667777777655432   122222345777777765

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.70  E-value=3.5  Score=33.64  Aligned_cols=204  Identities=11%  Similarity=0.001  Sum_probs=104.2

Q ss_pred             CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-ccCCCCCeeeEEeccCC
Q 035621           17 EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NIPVPEPVAPLATTADG   95 (387)
Q Consensus        17 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~   95 (387)
                      ||.|+.|-....-.+..-......|..++......+.    +  . ||.|..|-......+. .......|..++...+.
T Consensus        41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~----l--~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h  113 (282)
T 3qhy_B           41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLA----L--K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA  113 (282)
T ss_dssp             TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEE----E--E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE
T ss_pred             CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEE----E--E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE
Confidence            8999999765322221111122346666665532221    1  3 8999999865432221 11123467766665543


Q ss_pred             CEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee
Q 035621           96 SYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF  175 (387)
Q Consensus        96 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  175 (387)
                        .++-. +|.|+.|-....-.+.........|..++...+...+  -. ||.+..|-....-..        ..+    
T Consensus       114 --s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gql--------g~p----  175 (282)
T 3qhy_B          114 --SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQT--------TVP----  175 (282)
T ss_dssp             --EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTT--------SCC----
T ss_pred             --EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCC--------CCc----
Confidence              33334 8999999754322111111123457777765433222  23 799999965321111        000    


Q ss_pred             eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE-EEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621          176 VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS-TVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       176 ~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                      ..-...|..++.-..   ..++.  .||.|..|=......+. ..+....|..++-...  +.++-. ||.++.|=...
T Consensus       176 ~~~~~~v~~i~~G~~---hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--h~~al~-~g~v~~wG~n~  246 (282)
T 3qhy_B          176 AEAQSGVDDVAGGIF---HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW--YSLALK-NGKVIAWGSSR  246 (282)
T ss_dssp             GGGGSSEEEEEECSS---EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS--CEEEEE-TTEEEEESTTC
T ss_pred             eecCCCeEEEEecCC---EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC--EEEEEE-CCEEEEecCCC
Confidence            011345777765433   34444  58999999755422111 1112235666665443  233333 99999997654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.69  E-value=13  Score=36.30  Aligned_cols=38  Identities=16%  Similarity=0.287  Sum_probs=33.6

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          275 VVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       275 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46777888888999999999999999999999988764

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=90.67  E-value=6.4  Score=32.62  Aligned_cols=186  Identities=12%  Similarity=0.079  Sum_probs=104.9

Q ss_pred             CCCCCeEEEEEccCCCccc---------ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCC---CC------cee---
Q 035621           60 TTGSGSVHLYNLWSSTPLH---------NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVP---KG------DIL---  118 (387)
Q Consensus        60 ~~~d~~v~vw~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~------~~~---  118 (387)
                      .+.+|.|+--.+..-+...         .+...+.+..+........++..+..|.++-+...   ..      ..+   
T Consensus        14 ~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~   93 (312)
T 1suu_A           14 LTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL   93 (312)
T ss_dssp             EETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGT
T ss_pred             EeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhc
Confidence            4567777766553322111         12233445555555555677777788876666542   21      111   


Q ss_pred             EEccCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCce
Q 035621          119 RSFSAHDKPVSCLKISP---DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI  195 (387)
Q Consensus       119 ~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  195 (387)
                      ..+.. ...|.++...+   +..+++..+..|.++...+.......     ..+.....+.. .+.+..+.....  +..
T Consensus        94 l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r-----~~G~~~i~L~~-~d~lv~~~~~~~--~~~  164 (312)
T 1suu_A           94 INLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK-----SRGVIVIKLND-KDFVTSAEIVFK--DEK  164 (312)
T ss_dssp             SCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC---------CEECBCCCT-TCCEEEEEEECT--TCE
T ss_pred             cCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC-----CCcEEEEecCC-CCEEEEEEEeCC--CCE
Confidence            11222 23455554332   45678889999999998885542221     12223333433 455666555433  356


Q ss_pred             EEEEeCCCcEEEEeCCCC---------cEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621          196 IISCSMDCTCKFWRLLNG---------THLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       196 l~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  254 (387)
                      ++..+.+|.+..+....-         .....+.....+..+..-+++..+++.+..|......+...
T Consensus       165 i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~  232 (312)
T 1suu_A          165 VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI  232 (312)
T ss_dssp             EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred             EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence            778888999988876531         11222223456666666556677888899999988887653

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.31  E-value=6.4  Score=32.04  Aligned_cols=222  Identities=12%  Similarity=-0.027  Sum_probs=113.0

Q ss_pred             CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee
Q 035621           40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL  118 (387)
Q Consensus        40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  118 (387)
                      .|..++......+.    +  . ||.|..|-......+. .......|..++...+. .++. . ||.|+.|-....-.+
T Consensus        25 ~i~~ia~G~~h~~~----l--~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gql   94 (282)
T 3qhy_B           25 GVDAIAGGYFHGLA----L--K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQT   94 (282)
T ss_dssp             SCCEEEECSSEEEE----E--E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTT
T ss_pred             CCcEEEeCCCeEEE----E--E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCC
Confidence            46677665532221    1  3 8999999865443222 11122456666665443 2333 4 899999975432211


Q ss_pred             EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEE
Q 035621          119 RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS  198 (387)
Q Consensus       119 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s  198 (387)
                      ..-..-...|..++...+.  .+.-. ||.|+.|-....-..        .    ........|..++.-..   ..++.
T Consensus        95 g~P~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gql--------g----~~~~~~~~i~~i~~G~~---~~~~l  156 (282)
T 3qhy_B           95 TVPAEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQT--------T----VPAEAQSGVTALDGGVY---TALAV  156 (282)
T ss_dssp             CCCGGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTT--------S----CCGGGGSSEEEEEECSS---EEEEE
T ss_pred             CCCcccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcC--------C----CCccCCCCeEEEEcccC---EEEEE
Confidence            1111113467787775443  33334 899999965321111        0    00112345666655332   23332


Q ss_pred             EeCCCcEEEEeCCCCcEEE-EEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEE
Q 035621          199 CSMDCTCKFWRLLNGTHLS-TVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV  277 (387)
Q Consensus       199 ~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  277 (387)
                       . ||.|..|-......+. .......|..++....  +.++- .+|.++.|=..........         ......|.
T Consensus       157 -~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p---------~~~~~~v~  222 (282)
T 3qhy_B          157 -K-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVP---------TEALSGVS  222 (282)
T ss_dssp             -E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCC---------GGGGSSCC
T ss_pred             -E-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCC---------cccCCCce
Confidence             3 7999999765422111 1112345666665433  33333 6999999976553221110         01123466


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621          278 SVMMMNEGKNLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       278 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  306 (387)
                      .++..... .++..  ||.|+.|-.....
T Consensus       223 ~i~~G~~h-~~al~--~g~v~~wG~n~~g  248 (282)
T 3qhy_B          223 AIASGEWY-SLALK--NGKVIAWGSSRTA  248 (282)
T ss_dssp             EEEECSSC-EEEEE--TTEEEEESTTCCC
T ss_pred             EEEcCCCE-EEEEE--CCEEEEecCCCCc
Confidence            66654433 33333  8999999866543

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=89.74  E-value=7.7  Score=32.07  Aligned_cols=235  Identities=11%  Similarity=0.172  Sum_probs=118.2

Q ss_pred             CCCCCeEEEEEccCCCccc---------ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEe---CCCC------ceeE--
Q 035621           60 TTGSGSVHLYNLWSSTPLH---------NIPVPEPVAPLATTADGSYLFTGGLSGNVYAIS---VPKG------DILR--  119 (387)
Q Consensus        60 ~~~d~~v~vw~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d---~~~~------~~~~--  119 (387)
                      .+.+|.|+--.+.+-+...         .+...+.+..+........|+..+..|.++-+.   ++..      .++.  
T Consensus         9 ~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~   88 (307)
T 1zi0_A            9 LSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNL   88 (307)
T ss_dssp             EETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGT
T ss_pred             EeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhc
Confidence            4566777655543321111         122334454444445556677777788755544   3322      2211  


Q ss_pred             -EccCCCCCeEEEEEc---CCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCce
Q 035621          120 -SFSAHDKPVSCLKIS---PDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI  195 (387)
Q Consensus       120 -~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  195 (387)
                       .+. ....|.++..-   +++.+++..+..|.++--.+.......     ..+.....+..+ +.+..+.....  ...
T Consensus        89 l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~-----r~G~~~i~l~~~-d~lv~~~~~~~--~~~  159 (307)
T 1zi0_A           89 LPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR-----TAGKVAIKLVDG-DELIGVDLTSG--EDE  159 (307)
T ss_dssp             SCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCC-----TTCEESSCCCTT-CCEEEEEEECT--TCE
T ss_pred             cCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccc-----cCCeEEEEECCC-CEEEEEEEeCC--CCE
Confidence             122 23456555432   345679999999999998774432221     122222233333 45555544433  256


Q ss_pred             EEEEeCCCcEEEEeCCCC---------cEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc-ccccee
Q 035621          196 IISCSMDCTCKFWRLLNG---------THLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-HKGQEL  265 (387)
Q Consensus       196 l~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~  265 (387)
                      ++..+.+|.+..++...-         .....+.....|.++...+++..+++.+..|.++..++........ ..+...
T Consensus       160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~  239 (307)
T 1zi0_A          160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS  239 (307)
T ss_dssp             EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEES
T ss_pred             EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEe
Confidence            777778888877776421         1111223345677776656667788889999988887754321111 111112


Q ss_pred             EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       266 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      ..+. ...+.+-.+....+..-++..+.+|.+.-+++..
T Consensus       240 ~~~~-~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~  277 (307)
T 1zi0_A          240 IKVT-ERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE  277 (307)
T ss_dssp             SCCC-TTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred             eEec-CCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence            2221 1223444444333334455555666665555443

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=89.11  E-value=7.9  Score=31.39  Aligned_cols=166  Identities=13%  Similarity=0.080  Sum_probs=99.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcE
Q 035621          126 KPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTC  205 (387)
Q Consensus       126 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i  205 (387)
                      ..+..+........|+.-+..|.++--.+.+.....     ...  +  + .....|..+.. ++-+..+++..+.+|.+
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~-----~~~--l--l-~~~e~i~~v~~-~~~~~~~~v~~T~~G~i   92 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGS-----KVS--L--K-SREEKIVGAFI-REKFGNRLLLATKKGYV   92 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSE-----ECC--C--S-STTCCEEEEEE-GGGSCSEEEEEETTSEE
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCc-----ccc--c--C-CCCCEEEEEEC-CcCCCCEEEEEeCCCEE
Confidence            345555444445567777778887765553332111     011  2  2 23456666643 32124789999999999


Q ss_pred             EEEeCCCCc------EEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccc-ccccceeEeecccccccEEE
Q 035621          206 KFWRLLNGT------HLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQ-MHKGQELVTLANRHDGVVVS  278 (387)
Q Consensus       206 ~iwd~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~  278 (387)
                      +-..+....      ....+.....+..+........++..+..|.++.+....-+... ...+.....+  .....|..
T Consensus        93 Kr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L--~~~d~vv~  170 (276)
T 3no0_A           93 KKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL--EKNDETSG  170 (276)
T ss_dssp             EEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--CTTCCEEE
T ss_pred             EEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc--CCCCEEEE
Confidence            998875432      11222334566666666667789999999999988775533221 1123332222  22356777


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECCC
Q 035621          279 VMMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       279 ~~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      +...+++..++..+..|.++...+..
T Consensus       171 ~~~~~~~~~ll~~T~~G~~kr~~~~e  196 (276)
T 3no0_A          171 LRIWNGEPYLLVITAKGRVKKISHEE  196 (276)
T ss_dssp             EEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred             EEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence            66666677888999999999988754

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=87.73  E-value=12  Score=31.84  Aligned_cols=186  Identities=10%  Similarity=0.096  Sum_probs=99.8

Q ss_pred             CCCCCeEEEEEccC---------CCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEe---CCC------CceeEE-
Q 035621           60 TTGSGSVHLYNLWS---------STPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAIS---VPK------GDILRS-  120 (387)
Q Consensus        60 ~~~d~~v~vw~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d---~~~------~~~~~~-  120 (387)
                      .+.+|.|+--.+..         +.....++....+..+........|+..+..|.++-+.   ++.      |..+.. 
T Consensus        13 lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~l   92 (370)
T 3l6v_A           13 LSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINW   92 (370)
T ss_dssp             EESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGS
T ss_pred             EeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhc
Confidence            45667766554421         11122333445565555555566677777778665554   332      222211 


Q ss_pred             --ccCCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCce
Q 035621          121 --FSAHDKPVSCLKISP---DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI  195 (387)
Q Consensus       121 --~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  195 (387)
                        +. ....|.++..-+   ++.+|+.++..|.++...+.......     ..+.....+.. .+.+..+.....  ...
T Consensus        93 l~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~-----~~G~~ai~L~~-~d~lv~v~~~~~--~~~  163 (370)
T 3l6v_A           93 IPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRL-----ARGKIAINLDE-GDALVGVALTDG--DRD  163 (370)
T ss_dssp             CCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCC-----TTCEESSCCCT-TCCEEEEEEECS--CCE
T ss_pred             cCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhccc-----CCceEEEEeCC-CCEEEEEEEeCC--Cce
Confidence              22 234555554332   45689999999999998875443211     12222223333 344555544433  356


Q ss_pred             EEEEeCCCcEEEEeCCCCc---------EEEEEecCCceeEEEeCC----------------------------------
Q 035621          196 IISCSMDCTCKFWRLLNGT---------HLSTVTFPCAIMGLALDP----------------------------------  232 (387)
Q Consensus       196 l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~v~~~~~~~----------------------------------  232 (387)
                      ++..+.+|.+.-++...-.         ....+.....|.++...+                                  
T Consensus       164 i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~  243 (370)
T 3l6v_A          164 VLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADN  243 (370)
T ss_dssp             EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC--------------------------------
T ss_pred             EEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccc
Confidence            7777788887777654211         111122334455544433                                  


Q ss_pred             -CCCeEEEEccCCcEEEEecccc
Q 035621          233 -TETDFFAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       233 -~~~~l~~~~~dg~i~i~d~~~~  254 (387)
                       .+..+++.+..|..+...+...
T Consensus       244 ~~~~~il~vTe~G~gKrt~~~e~  266 (370)
T 3l6v_A          244 GDVAYILTATENGYGKRTPLAEY  266 (370)
T ss_dssp             ---CEEEEEETTSEEEEEEGGGS
T ss_pred             cCCceEEEeeCCCCEEEEEHHHh
Confidence             4467888899999888877653

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=87.15  E-value=20  Score=33.71  Aligned_cols=238  Identities=11%  Similarity=0.097  Sum_probs=118.0

Q ss_pred             cccCCCcEEEee-----CCCCcEEEEeCCCCceeEe-ccCCCC--------CceeEEEcC-ccceeeec-----cccCCC
Q 035621            3 HHLPCNEVILTS-----SPEGPITAYNPSSGAILAH-FSGSRS--------PRRGLTFAG-KPFIAASH-----ISPTTG   62 (387)
Q Consensus         3 ~~s~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~-~~~~~~--------~v~~~~~~~-~~~~~~~~-----~~~~~~   62 (387)
                      +++|++++++.+     +.-..++++|+.+++.+.. +. ...        ....++|.+ +..+....     +-..+.
T Consensus       136 ~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~  214 (711)
T 4hvt_A          136 NCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLY  214 (711)
T ss_dssp             ECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSS
T ss_pred             ecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCC
Confidence            488999887763     3334699999999987632 22 110        013346654 33333221     112233


Q ss_pred             CCeEEEEEccCCCc--ccccC--CCCCeeeEEeccCCCE-----EEEec---CCCcEEEEeCCC--CceeEEccCCCCCe
Q 035621           63 SGSVHLYNLWSSTP--LHNIP--VPEPVAPLATTADGSY-----LFTGG---LSGNVYAISVPK--GDILRSFSAHDKPV  128 (387)
Q Consensus        63 d~~v~vw~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~-----l~~~~---~dg~i~i~d~~~--~~~~~~~~~~~~~v  128 (387)
                      ...|+.|.+-+...  ...+.  ....-.....++++++     +++.+   ....+.+.+...  ++.. .+...... 
T Consensus       215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~-  292 (711)
T 4hvt_A          215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPSDA-  292 (711)
T ss_dssp             BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCTTC-
T ss_pred             CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCCcc-
Confidence            46788887755421  11222  2222233445666652     33332   224566666543  3322 23222221 


Q ss_pred             EEEEEcCCCCEEEEEe----------CCCcEEEEeCCcccccCCCCCCCCccceEeeec--cCCCeEEEEEeeCCCCceE
Q 035621          129 SCLKISPDGSLLISGG----------DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA--HNDSVTAITCCIGSFNSII  196 (387)
Q Consensus       129 ~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l  196 (387)
                       .+..+.++.+++...          ..+.|...|+.......     ........+..  ....+..+.+..+   .++
T Consensus       293 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~---~l~  363 (711)
T 4hvt_A          293 -TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTE-----SDKTSLKILFTPTANEVFNFISTTKD---RVF  363 (711)
T ss_dssp             -EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCG-----GGCTTCEEEECCCTTEEEEEEEECSS---CEE
T ss_pred             -eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccc-----cccccceEEECCCCCCeEEEEEEECC---EEE
Confidence             123344555555331          35678888874321000     00011222222  2335666766544   577


Q ss_pred             EEEeCCCc--EEEEeCCCCc-EEEE-EecC--CceeEEEeCCCCCeEEEE-cc---CCcEEEEecc
Q 035621          197 ISCSMDCT--CKFWRLLNGT-HLST-VTFP--CAIMGLALDPTETDFFAA-GS---DGLIYKGLLK  252 (387)
Q Consensus       197 ~s~~~d~~--i~iwd~~~~~-~~~~-~~~~--~~v~~~~~~~~~~~l~~~-~~---dg~i~i~d~~  252 (387)
                      ++...++.  +.++|+.+++ .... +..+  ..+......+++..++.. +.   -+.++.+|+.
T Consensus       364 ~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          364 LATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             EEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            77777764  6777776664 2333 4333  456667777777655443 32   3567777765

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=86.36  E-value=13  Score=30.66  Aligned_cols=136  Identities=7%  Similarity=-0.024  Sum_probs=71.1

Q ss_pred             ccCCCcEEEeeCCC--------------CcEEEEeCCCCceeEeccCCCCCceeEEEcC--ccceeeeccccCCCCCeEE
Q 035621            4 HLPCNEVILTSSPE--------------GPITAYNPSSGAILAHFSGSRSPRRGLTFAG--KPFIAASHISPTTGSGSVH   67 (387)
Q Consensus         4 ~s~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~d~~v~   67 (387)
                      ++++|+.|+.....              ..|+..++..++.. .+..  ....  .+++  +..+...  .+......|.
T Consensus        60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~--~~~~--~~s~~g~~Iy~~~--~~~~~~~~Iy  132 (302)
T 3s25_A           60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP--DPCI--YASLIGNYIYYLH--YDTQTATSLY  132 (302)
T ss_dssp             EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC--SCEE--EEEEETTEEEEEE--ESSSSCEEEE
T ss_pred             EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec--CCcc--EEEEeCCEEEEEe--ecCCCCceEE
Confidence            56777777766432              35777776655432 2321  1122  3444  2222211  0113345566


Q ss_pred             EEEccCCCcccccCCCCCeeeEEeccCCCEEEEecC-CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC
Q 035621           68 LYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGL-SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD  146 (387)
Q Consensus        68 vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  146 (387)
                      .-++..........+..    .+++++++.|+-.+. ...|...++..+.....+.   +... ..+.|++.+|+-....
T Consensus       133 ~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~  204 (302)
T 3s25_A          133 RIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVN  204 (302)
T ss_dssp             EEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGG
T ss_pred             EEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcC
Confidence            66665443333322222    456788888886654 5688888887665443333   2222 3456888888776544


Q ss_pred             C--cEEEEeC
Q 035621          147 G--VIATVPI  154 (387)
Q Consensus       147 g--~i~iwd~  154 (387)
                      +  .|..-++
T Consensus       205 ~~~~I~~~~l  214 (302)
T 3s25_A          205 RDNAIVHVNI  214 (302)
T ss_dssp             GTTEEEEECS
T ss_pred             CCcEEEEEEC
Confidence            3  4544444

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=85.67  E-value=18  Score=31.87  Aligned_cols=112  Identities=7%  Similarity=0.118  Sum_probs=60.2

Q ss_pred             CCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCC---cEEEEEe---c-------CCceeEEEeCCC---CCeEEEE-cc
Q 035621          180 DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG---THLSTVT---F-------PCAIMGLALDPT---ETDFFAA-GS  242 (387)
Q Consensus       180 ~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~---~-------~~~v~~~~~~~~---~~~l~~~-~~  242 (387)
                      ..-+.|+|.|++.+++|+ +...|.|++++....   ..+..+.   .       ......++++|+   ..+|++. +.
T Consensus        14 ~~P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFI-LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEE-EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEE-EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            345678888886323554 567899999975422   1222222   1       346788999997   3344433 22


Q ss_pred             --C----------CcEEEEeccccc--cccccccceeEeec---ccccccEEEEEEecCCCEEEEEeCC
Q 035621          243 --D----------GLIYKGLLKYQS--RQQMHKGQELVTLA---NRHDGVVVSVMMMNEGKNLVSAAED  294 (387)
Q Consensus       243 --d----------g~i~i~d~~~~~--~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d  294 (387)
                        +          ..|.-|.+....  .........+....   ..|  .-..|+|.|||.++++.+..
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H--~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKH--LGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSS--CEEEEEECTTSCEEEEECCT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcc--cCCcEeECCCCcEEEEeCCC
Confidence              1          134445554321  11111112222221   234  35789999999877766543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=84.41  E-value=19  Score=30.85  Aligned_cols=230  Identities=7%  Similarity=-0.023  Sum_probs=99.6

Q ss_pred             CeeeEEecc-C-CCEEEEecCCCcEEEEeCCCCceeEEcc---C----------------CCCCeEEEEEcCC-CCEEEE
Q 035621           85 PVAPLATTA-D-GSYLFTGGLSGNVYAISVPKGDILRSFS---A----------------HDKPVSCLKISPD-GSLLIS  142 (387)
Q Consensus        85 ~v~~~~~~~-~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~----------------~~~~v~~~~~~~~-~~~l~~  142 (387)
                      .|.++++.| + ...+.+++..+.|...+- .++.-..+.   .                ....+.+|.++|. ...+..
T Consensus       116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v  194 (394)
T 3b7f_A          116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI  194 (394)
T ss_dssp             EEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred             ceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence            467788886 2 456666665665655532 232222221   0                1235789999883 444555


Q ss_pred             EeCCCcEEEEe-CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 035621          143 GGDDGVIATVP-IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-  220 (387)
Q Consensus       143 ~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-  220 (387)
                      +..++.|...+ -.+.+............+.. .......+.++.+.|.. ...++.+...+ |...+ ..++....+. 
T Consensus       195 g~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~-~~~~g~~~~~i~~~~~~-~~~l~vg~~~g-l~~s~-D~G~tW~~~~~  270 (394)
T 3b7f_A          195 GMSSGGVFESTDAGTDWKPLNRGCAANFLPDP-NVEFGHDPHCVVQHPAA-PDILYQQNHCG-IYRMD-RREGVWKRIGD  270 (394)
T ss_dssp             EEETBEEEEESSTTSSCEECCTTCCCTTSSSS-SSSSCBCEEEEEECSSS-TTEEEEEETTE-EEEEE-TTTTEEECGGG
T ss_pred             EECCCCEEEECCCCCCceECCCCccccccCCC-ccccCcceeEEEECCCC-CCEEEEEcCCe-EEEeC-CCCCcceECCC
Confidence            55444443322 11111110000000000000 00001247788887753 24555555444 44333 2233333332 


Q ss_pred             -cC----CceeEEEeCCC-CCeEEEEcc-----------CCcEEEEeccccccccccccceeEeeccccc----ccEEEE
Q 035621          221 -FP----CAIMGLALDPT-ETDFFAAGS-----------DGLIYKGLLKYQSRQQMHKGQELVTLANRHD----GVVVSV  279 (387)
Q Consensus       221 -~~----~~v~~~~~~~~-~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~  279 (387)
                       .+    ..+..++++|. ...++++..           ++...+|..........    .+..-+....    .....+
T Consensus       271 ~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~----~~~~glp~~~~~~~~~~~~~  346 (394)
T 3b7f_A          271 AMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQ----RQDRGLPTDQAWLTVKRQAM  346 (394)
T ss_dssp             GSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCE----EECBTSCCSSCCCCCCTBSE
T ss_pred             CCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCce----ECCCCCCCccccceEEEEEE
Confidence             12    23567888763 345555532           23344554443211100    0000000000    011357


Q ss_pred             EEecC-CCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621          280 MMMNE-GKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       280 ~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  325 (387)
                      +++|. ...|+.++.++.|..- .+.++.-..+..... .+.++.|+
T Consensus       347 ~~~p~~~~~l~~g~~~g~l~~S-~D~G~tW~~~~~~lp-~~~~v~~~  391 (394)
T 3b7f_A          347 TADAHAPVGVYFGTTGGEIWAS-ADEGEHWQCIASHLP-HIYAVQSA  391 (394)
T ss_dssp             EECCSSSCCEEEECTTSCEEEE-SSTTSBCEEEECSCS-CEEEEEEE
T ss_pred             EECCCCCCEEEEEeCCCeEEEE-CCCCCCceEcccCCC-CeeEEEEe
Confidence            78774 3456666666655433 234554444444433 56666655

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=82.78  E-value=22  Score=30.44  Aligned_cols=184  Identities=12%  Similarity=0.048  Sum_probs=91.3

Q ss_pred             CCCCeEEEEEccCCCccc-----------ccC--CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCC-Cc----------
Q 035621           61 TGSGSVHLYNLWSSTPLH-----------NIP--VPEPVAPLATTADGSYLFTGGLSGNVYAISVPK-GD----------  116 (387)
Q Consensus        61 ~~d~~v~vw~~~~~~~~~-----------~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~----------  116 (387)
                      ..+|.|..|-......+.           .+.  ....|..++..  ..+.++-..+|.|+.|=... ++          
T Consensus       123 ~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~  200 (389)
T 3kci_A          123 SSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQL  200 (389)
T ss_dssp             ETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEE
T ss_pred             cCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccc
Confidence            468999999654321110           111  11234444443  34455556788999996422 11          


Q ss_pred             eeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec-cCCCeEEEEEeeCCCCc
Q 035621          117 ILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA-HNDSVTAITCCIGSFNS  194 (387)
Q Consensus       117 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~  194 (387)
                      ....+. .....|..++........+.-..||.|+.|-....-..-.........+ ..+.. ....|..++.-.    .
T Consensus       201 ~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p-~~v~~~~~~~v~~v~~G~----~  275 (389)
T 3kci_A          201 KPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVP-MKIDSLTGLGVVKVECGS----Q  275 (389)
T ss_dssp             EEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEE-EECGGGTTSCEEEEEEET----T
T ss_pred             cceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCcccc-EEecccCCCcEEEEeCCC----C
Confidence            011111 1234577777654335666677899999996533221111110001111 11111 122466665532    3


Q ss_pred             eEEEEeCCCcEEEEeCCCC--------c-E--EEEEec--CCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621          195 IIISCSMDCTCKFWRLLNG--------T-H--LSTVTF--PCAIMGLALDPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       195 ~l~s~~~d~~i~iwd~~~~--------~-~--~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                      ..+.-..||.|..|=....        . .  ...+..  ...|..++.  ...+.++-..+|.|+.|=...
T Consensus       276 hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~  345 (389)
T 3kci_A          276 FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDND  345 (389)
T ss_dssp             EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECCT
T ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCC
Confidence            4444567899999965321        0 1  111111  234555544  334556667899999997654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.74  E-value=2.8  Score=41.97  Aligned_cols=38  Identities=16%  Similarity=0.287  Sum_probs=32.4

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEee
Q 035621          275 VVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK  312 (387)
Q Consensus       275 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (387)
                      .+.+++..++..++++-+.|+++|||++.+++++.+..
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            34556677788999999999999999999999988764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.66  E-value=41  Score=32.90  Aligned_cols=38  Identities=13%  Similarity=0.234  Sum_probs=30.6

Q ss_pred             CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe
Q 035621          181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT  220 (387)
Q Consensus       181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  220 (387)
                      .+.+++..++  ..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~--~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLST--YNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETT--TTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCC--CcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            3455555544  4789999999999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	387
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-21
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.004
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	5e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-04
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.2 bits (222), Expect = 5e-21
 Identities = 48/303 (15%), Positives = 108/303 (35%), Gaps = 19/303 (6%)

Query: 6   PCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGS 65
           P   V++++S +  I  ++  +G       G     + ++F     +     S +     
Sbjct: 27  PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL---LASCSADMTI 83

Query: 66  VHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHD 125
                               V+ ++   +G ++ +      +    V  G  +++F+ H 
Sbjct: 84  KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR 143

Query: 126 KPVSCLKISPDGSLLISGGDDGVI-----ATVPIFQLVDEHTDDKNPDDLML-QKFVAHN 179
           + V  ++ + DG+L+ S  +D  +     AT      + EH              + + +
Sbjct: 144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 203

Query: 180 DSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFF 238
           ++  + T   G     ++S S D T K W +  G  L T+      + G+          
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL 263

Query: 239 AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVY 298
           +   D  +   +  Y++++ M          N H+  V S+        +V+ + D +V 
Sbjct: 264 SCADDKTLR--VWDYKNKRCMKT-------LNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 314

Query: 299 IWE 301
           +WE
Sbjct: 315 VWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.2 bits (170), Expect = 5e-14
 Identities = 18/164 (10%), Positives = 53/164 (32%), Gaps = 17/164 (10%)

Query: 3   HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTF------------AGKP 50
                  +I + S +  +  +  ++    A     R     +++             G  
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209

Query: 51  FIAASHISPTTGSGS----VHLYNLWSSTPLHNIPVPE-PVAPLATTADGSYLFTGGLSG 105
              +    P   SGS    + ++++ +   L  +   +  V  +   + G ++ +     
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 269

Query: 106 NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVI 149
            +          +++ +AH+  V+ L        +++G  D  +
Sbjct: 270 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 313

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.3 bits (160), Expect = 8e-13
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 22/201 (10%)

Query: 112 VPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLM 171
           +P+     + S H  PV+ +   P  S+++S  +D  I      ++ D  T D       
Sbjct: 4   IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATI------KVWDYETGD------F 51

Query: 172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALD 231
            +    H DSV  I+           S  M      ++       +       +  +++ 
Sbjct: 52  ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVSIM 110

Query: 232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA 291
           P      +A  D            +    +    V     H   V  V    +G  + S 
Sbjct: 111 PNGDHIVSASRDK---------TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161

Query: 292 AEDGSVYIWEIEKRQVVMVLK 312
           + D +V +W +  ++    L+
Sbjct: 162 SNDQTVRVWVVATKECKAELR 182

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 4e-10
 Identities = 32/261 (12%), Positives = 67/261 (25%), Gaps = 32/261 (12%)

Query: 85  PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG 144
           PV  +      S + +      +       GD  R+   H   V  +             
Sbjct: 19  PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-------- 70

Query: 145 DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT 204
                    +     + T               H       +  I      I+S S D T
Sbjct: 71  ------GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124

Query: 205 CKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG- 262
            K W +  G  + T T     +  +  +   T   +  +D  +   ++  +  +   +  
Sbjct: 125 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184

Query: 263 ----------QELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312
                      E    +        +      G  L+S + D ++ +W++     +M L 
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244

Query: 313 ------NELAGSISEMVIATG 327
                   +        I + 
Sbjct: 245 GHDNWVRGVLFHSGGKFILSC 265

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.5 bits (184), Expect = 9e-16
 Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 11/152 (7%)

Query: 3   HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFA--GKPFIAASHISPT 60
              P   + ++ + +     ++   G     F+G  S    + F   G  F   S     
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD---- 246

Query: 61  TGSGSVHLYNLWSSTPLHNIPVPE---PVAPLATTADGSYLFTGGLSGNVYAISVPKGDI 117
               +  L++L +   L           +  ++ +  G  L  G    N       K D 
Sbjct: 247 --DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304

Query: 118 LRSFSAHDKPVSCLKISPDGSLLISGGDDGVI 149
               + HD  VSCL ++ DG  + +G  D  +
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.0 bits (180), Expect = 2e-15
 Identities = 37/281 (13%), Positives = 75/281 (26%), Gaps = 45/281 (16%)

Query: 85  PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG 144
            +  +    D   L +    G +        + + +       V     +P G+ +  GG
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116

Query: 145 DDGVIATVPI-------------------------------FQLVDEHTDDKNPDDLMLQ 173
            D + +   +                                    + T      +   Q
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176

Query: 174 KFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDP 232
                  +   ++  +     + +S + D + K W +  G    T T     I  +   P
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query: 233 TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292
               F     D       L+       +               + SV     G+ L++  
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHD-------NIICGITSVSFSKSGRLLLAGY 289

Query: 293 EDGSVYIWEIEKRQVVMVLK------NELAGSISEMVIATG 327
           +D +  +W+  K     VL       + L  +   M +ATG
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.1 bits (175), Expect = 1e-14
 Identities = 20/154 (12%), Positives = 45/154 (29%), Gaps = 13/154 (8%)

Query: 95  GSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPI 154
                +G    +     V +G   ++F+ H+  ++ +   P+G+   +G DD        
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR---- 251

Query: 155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGT 214
                   D +   +LM          +T+          ++++   D  C  W  L   
Sbjct: 252 ------LFDLRADQELMTYSHDNIICGITS--VSFSKSGRLLLAGYDDFNCNVWDALKAD 303

Query: 215 HLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIY 247
               +      +  L +            D  + 
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.5 bits (132), Expect = 4e-09
 Identities = 31/210 (14%), Positives = 59/210 (28%), Gaps = 19/210 (9%)

Query: 103 LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHT 162
           ++ N+  +   +    R+   H   +  +    D  LL+S   DG +     +     H 
Sbjct: 33  ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 92

Query: 163 DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP 222
                           +  V   TC      + +    +D  C  + L        V+  
Sbjct: 93  ------------IPLRSSWVM--TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138

Query: 223 CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMM 282
            A                  D  I              +  +  T    H G V+S+ + 
Sbjct: 139 LAGH-----TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193

Query: 283 NEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312
            + +  VS A D S  +W++ +        
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFT 223

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.5 bits (176), Expect = 1e-14
 Identities = 31/167 (18%), Positives = 51/167 (30%), Gaps = 16/167 (9%)

Query: 95  GSYLFTGGLSGNVYAISVPKGDI-------LRSFSAHDKPVSCLKISPDGSLLISGGDDG 147
           G Y+  G L   V       G +         S + H   V  +  + DG  ++SG  D 
Sbjct: 217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 276

Query: 148 VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKF 207
            +    +    ++              ++ H D V +        +  I+S S D    F
Sbjct: 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS--VATTQNDEYILSGSKDRGVLF 334

Query: 208 WRLLNGT-------HLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY 247
           W   +G        H ++V       G +L P    F     D    
Sbjct: 335 WDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 381

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.4 bits (155), Expect = 5e-12
 Identities = 46/313 (14%), Positives = 88/313 (28%), Gaps = 57/313 (18%)

Query: 84  EPVAPLATTADGSYLFTGG-----------------LSGNVYAISVPKGDILRSFSAHDK 126
             V  +  + DG YL TG                  LS +  A   P+     S  + D 
Sbjct: 63  SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122

Query: 127 PVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA--------- 177
            +  +  SPDG  L +G +D +I    I           +  D+    +           
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182

Query: 178 -------------------HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLST 218
                                +               I + S+D   + W    G  +  
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242

Query: 219 VTFPC--------AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG---QELVT 267
           +            ++  +          +   D  +    L+  + +   K         
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302

Query: 268 LANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG 327
               H   V+SV      + ++S ++D  V  W+ +    +++L+     S+  + +A G
Sbjct: 303 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-RNSVISVAVANG 361

Query: 328 IGGSRGCGVVKTG 340
                   V  TG
Sbjct: 362 SSLGPEYNVFATG 374

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.0 bits (154), Expect = 6e-12
 Identities = 41/249 (16%), Positives = 86/249 (34%), Gaps = 26/249 (10%)

Query: 78  HNIPVPEPVAPLATTADGSY---LFTGGLSGN--VYAISVPK--GDILRSFSAHDKPVSC 130
           H+ P+P    P     D            +    +Y  ++P+     L     H   V C
Sbjct: 12  HSKPIP----PFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCC 67

Query: 131 LKISPDGSLLISGGDDGVI-----ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAI 185
           +K S DG  L +G +             + +L D+   +K+P++L      + +  + ++
Sbjct: 68  VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127

Query: 186 TCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGL 245
             C       + + + D   + W + N   +  +      +         D   +GS   
Sbjct: 128 --CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 185

Query: 246 IYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR 305
             +       +  +          +  DGV    +   +GK + + + D +V +W+ E  
Sbjct: 186 TVRIWDLRTGQCSLTL--------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 237

Query: 306 QVVMVLKNE 314
            +V  L +E
Sbjct: 238 FLVERLDSE 246

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.5 bits (137), Expect = 9e-10
 Identities = 23/169 (13%), Positives = 51/169 (30%), Gaps = 22/169 (13%)

Query: 3   HHLPCNEVILTSSPEGPITAYNPSSGAI-------LAHFSGSRSPRRGLTFA--GKPFIA 53
                 + I   S +  +  ++  +G +           +G +     + F   G+  ++
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271

Query: 54  AS-------HISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGN 106
            S              + S        +  +  I   + V  +ATT +  Y+ +G     
Sbjct: 272 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

Query: 107 VYAISVPKGDILRSFSAHDKPVSCLKI------SPDGSLLISGGDDGVI 149
           V       G+ L     H   V  + +       P+ ++  +G  D   
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA 380

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.5 bits (155), Expect = 4e-12
 Identities = 30/234 (12%), Positives = 65/234 (27%), Gaps = 7/234 (2%)

Query: 78  HNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI--LRSFSAHDKPVSCLKISP 135
           H+  V EP++  A   D + +     +  V+           +     H+  V+ +  +P
Sbjct: 3   HSFLV-EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61

Query: 136 DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI 195
           D + +++ G D       +     + T      +   +      +             SI
Sbjct: 62  DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121

Query: 196 IISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQS 255
                 +        +     STV          L    +  F         K + +  +
Sbjct: 122 CYFEQENDWWVCKH-IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180

Query: 256 RQQMHKGQELVTLA---NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ 306
                       L    +   G V  V     G  +   + D +V + + +K+ 
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM 234

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.2 bits (97), Expect = 7e-05
 Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 30/156 (19%)

Query: 85  PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG 144
            V  +  +A+GS +        V      K   + + ++   P+  +    + SL+ +G 
Sbjct: 203 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH 262

Query: 145 DDGV----------------------------IATVPIFQLVDEHTDDKNPDDLMLQKFV 176
           D                               +     FQ +D+    +           
Sbjct: 263 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS 322

Query: 177 AHNDSVTAITCCIG--SFNSIIISCSMDCTCKFWRL 210
            H +SV+ I+   G  +  S   +  MD     W +
Sbjct: 323 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 13/122 (10%)

Query: 186 TCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGL 245
                   S +++   DC    +   +           +  G    P ++      +   
Sbjct: 247 LAVTFITESSLVAAGHDCFPVLFTYDSAAGK------LSFGGRLDVPKQSSQRGLTARER 300

Query: 246 IYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKN----LVSAAEDGSVYIWE 301
                 K  S      G  L +L   H   V  + +++ GK       +   DG + IW+
Sbjct: 301 FQNLDKKASSEGSAAAGAGLDSL---HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357

Query: 302 IE 303
           + 
Sbjct: 358 VR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 7/86 (8%)

Query: 224 AIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN 283
            I   A +   T      ++  ++  + +    +        V     H+G V  V    
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVH--IYEKSGNKW-----VQVHELKEHNGQVTGVDWAP 61

Query: 284 EGKNLVSAAEDGSVYIWEIEKRQVVM 309
           +   +V+   D + Y+W ++ R    
Sbjct: 62  DSNRIVTCGTDRNAYVWTLKGRTWKP 87

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 63.8 bits (153), Expect = 6e-12
 Identities = 31/256 (12%), Positives = 56/256 (21%), Gaps = 33/256 (12%)

Query: 89  LATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGV 148
           L  T  G  +       +VY + V        ++ H    +  K SP G    SG   G 
Sbjct: 23  LGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81

Query: 149 IATVP--------------------------------IFQLVDEHTDDKNPDDLMLQKFV 176
           +                                          E        D       
Sbjct: 82  VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN 141

Query: 177 AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETD 236
               +    +          I    D               +          ++      
Sbjct: 142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 201

Query: 237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS 296
              A + G     L       +    ++       H G V  +    +G  + SA+ D +
Sbjct: 202 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 261

Query: 297 VYIWEIEKRQVVMVLK 312
           + IW +   +V   + 
Sbjct: 262 IKIWNVATLKVEKTIP 277

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 7e-06
 Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 94  DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDK-PVSCLKISPDGSLLISGGDDGVI 149
           DG+ + +      +   +V    + ++     +     L I      L+S   +G I
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 29/278 (10%), Positives = 58/278 (20%), Gaps = 34/278 (12%)

Query: 60  TTGSGSVHLYNLWSSTPLHNIPV-PEPVAPLATTADGSYLFTGGLSGNV--YAISVPKGD 116
                SV+   + S T                T+  G Y  +G + GNV  +  +     
Sbjct: 34  YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93

Query: 117 ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV 176
           +  +      PV  +    +   + + G+                  +       +    
Sbjct: 94  LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD 153

Query: 177 AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETD 236
                   I          I           +        S    P   +  +     T 
Sbjct: 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 213

Query: 237 FFAAGSDGLIYKGLLKYQSRQQMH-------------------------------KGQEL 265
               G DG           +   H                                 +  
Sbjct: 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273

Query: 266 VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303
            T+          + ++   + LVS + +G +     E
Sbjct: 274 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 6e-11
 Identities = 45/292 (15%), Positives = 80/292 (27%), Gaps = 51/292 (17%)

Query: 76  PLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR-----SFSAHDKPVSC 130
            ++ +   E V  +  +    +++TGG  G V    +                 D  +  
Sbjct: 44  QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRS 102

Query: 131 LKISPDGSLLISGGDDGVIATVPIF------------------------------QLVDE 160
            K+ PDG  LI GG+   ++   +                                   +
Sbjct: 103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 162

Query: 161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT 220
                               +  A    I +  + + +  +D T + W L  G  L    
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD 222

Query: 221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVM 280
           F   I  L   PT            +    +    + Q+H           H+  V+S+ 
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH----------LHESCVLSLK 272

Query: 281 MMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE-----LAGSISEMVIATG 327
               GK  VS  +D  +  W       +   K          S+ +  I TG
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTG 324

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 10/131 (7%)

Query: 79  NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGS 138
                +P      TADG           +    +P+     +   H + V  + IS    
Sbjct: 5   GAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTR 64

Query: 139 LLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS 198
            + +GG       V ++ +    +   N   +     +  ++ + +  C +      +I 
Sbjct: 65  HVYTGGKG----CVKVWDI----SHPGNKSPVSQLDCLNRDNYIRS--CKLLPDGCTLIV 114

Query: 199 CSMDCTCKFWR 209
                T   W 
Sbjct: 115 GGEASTLSIWD 125

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 3e-09
 Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 4/95 (4%)

Query: 64  GSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA 123
            +V + ++              V  L     G +  + G    + A   P G  +     
Sbjct: 246 SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-K 304

Query: 124 HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV 158
               V    IS D   +++G  D       +++++
Sbjct: 305 ESSSVLSCDISVDDKYIVTGSGDK---KATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 15/88 (17%)

Query: 124 HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVT 183
           H+  V  LK +  G   +S G D     +  ++          P    + +    + SV 
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDN---LLNAWRT---------PYGASIFQS-KESSSVL 310

Query: 184 AITCCIGSFNSIIISCSMDCTCKFWRLL 211
           +  C I   +  I++ S D     + ++
Sbjct: 311 S--CDISVDDKYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 13/144 (9%), Positives = 40/144 (27%), Gaps = 12/144 (8%)

Query: 159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLST 218
           D      +  +    +       + ++  C       +         +   +        
Sbjct: 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYC--PTGEWLAVGMESSNVEVLHVNKPDKYQL 261

Query: 219 VTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVS 278
                 ++ L        F + G D L+     +      + +        ++    V+S
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLN--AWRTPYGASIFQ--------SKESSSVLS 311

Query: 279 VMMMNEGKNLVSAAEDGSVYIWEI 302
             +  + K +V+ + D    ++E+
Sbjct: 312 CDISVDDKYIVTGSGDKKATVYEV 335

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 1e-09
 Identities = 31/294 (10%), Positives = 68/294 (23%), Gaps = 58/294 (19%)

Query: 73  SSTPLHNIPVPEP------VAPLATTADGSYLFTGGLSGNV---YAISVPKGDILRSFSA 123
           SS  L  I  P+P         L+     + +                  K   +  F+ 
Sbjct: 1   SSISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTG 60

Query: 124 HD-KPVSCLKISP--DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND 180
           H    V+ +K SP      L SG + G +    I        +  + +  +  +F     
Sbjct: 61  HGSSVVTTVKFSPIKGSQYLCSGDESGKV----IVWGWTFDKESNSVEVNVKSEFQVLAG 116

Query: 181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA 240
            ++ I+         ++    D    F    +G  L  V+     +            + 
Sbjct: 117 PISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSM 176

Query: 241 GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN----------------- 283
                      +    +     +      +    V  S                      
Sbjct: 177 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 236

Query: 284 -------------------------EGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312
                                    + +   +   D ++ +W++   + V    
Sbjct: 237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 3/59 (5%)

Query: 94  DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKIS---PDGSLLISGGDDGVI 149
           D     T G    +    V     ++ ++   + +   ++         +IS   DG +
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 34/258 (13%), Positives = 60/258 (23%), Gaps = 53/258 (20%)

Query: 92  TADGSYLFTGGLSGNVYAISVPKGDILRSF--------SAHDKPVSCLKISPDGSLLISG 143
                YL +G  SG V            S              P+S +    +G  L   
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133

Query: 144 GDDG------------------------------------VIATVPIFQLVDEHTDDKNP 167
           G+                                         TV     V  +      
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193

Query: 168 DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMG 227
                +        V  +     S   +I   S      F                 + G
Sbjct: 194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 253

Query: 228 LALDPTETD---FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE 284
                +  D   F   G+D  I   +    + + + K     TL  +  G     ++   
Sbjct: 254 GIFALSWLDSQKFATVGADATIR--VWDVTTSKCVQK----WTLDKQQLGNQQVGVVATG 307

Query: 285 GKNLVSAAEDGSVYIWEI 302
              ++S + DG++  +E+
Sbjct: 308 NGRIISLSLDGTLNFYEL 325

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.4 bits (129), Expect = 7e-09
 Identities = 41/340 (12%), Positives = 84/340 (24%), Gaps = 43/340 (12%)

Query: 9   EVILTSSPEGPITAYNPSSGAILAHFSGSRSPR--RGLTFA--GKPFIAASHISPTTGSG 64
           + IL  +    +   +    A+    + + +         A  G+   A         S 
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV-----NKSE 56

Query: 65  SVHLYNLWSSTPLHNIPVPEPVAP------LATTADGSYLFTGGLSGNVYAISVPKGDI- 117
           S+   +L +   L  I +  P          A + DG  L        +           
Sbjct: 57  SLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116

Query: 118 ----------LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKN- 166
                      R      + ++ L  + DGS L   G D  +       LV++       
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE 176

Query: 167 ------PDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT 220
                 PD L +      +  +                 +         L  G       
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236

Query: 221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVM 280
               +   +         A G+  ++            + K   +  +         SV 
Sbjct: 237 RIMDVFYFSTAVNPAKTRAFGAYNVLE--------SFDLEKNASIKRVP--LPHSYYSVN 286

Query: 281 MMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSIS 320
           +  +G  +      G +  ++ E  +    +      S+S
Sbjct: 287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMS 326

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 2e-08
 Identities = 25/130 (19%), Positives = 39/130 (30%), Gaps = 13/130 (10%)

Query: 94  DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP 153
           + +Y+ TG     +          L   S HD  V  LK +  G +L+SG  D       
Sbjct: 22  EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTD------- 73

Query: 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG 213
                                F  HN +V  +          I++ S D T   W+L   
Sbjct: 74  -----RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128

Query: 214 THLSTVTFPC 223
           + +       
Sbjct: 129 SSVPDHGEEH 138

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 36/317 (11%), Positives = 94/317 (29%), Gaps = 11/317 (3%)

Query: 6   PCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGS 65
             +  ++T + +  I  Y+  +   L   SG       L +A    + +   S       
Sbjct: 21  FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSG--STDRTVRV 78

Query: 66  VHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHD 125
             +     +              +    +  Y+ TG     ++   +PK   +      +
Sbjct: 79  WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG-EE 137

Query: 126 KPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAI 185
                +  +P+ +    G   G +A+V             + D+ ++   VA    +  +
Sbjct: 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL 197

Query: 186 TCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGL 245
           +             S     +  R ++ +  +T+       G  +   +      G   L
Sbjct: 198 SGHTDRI------YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 251

Query: 246 IYKGLLKYQSRQQM--HKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE 303
             K L+   +   +      +     + H   + ++       N++ +  +    I+ + 
Sbjct: 252 SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR 311

Query: 304 KRQVVMVLKNELAGSIS 320
             ++V     + A  I 
Sbjct: 312 SGKLVHANILKDADQIW 328

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 5e-06
 Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 12/138 (8%)

Query: 178 HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC-AIMGLALDPTETD 236
           H  SV     C+   ++ +I+ + D   + +  +N   L  ++     +  L        
Sbjct: 11  HMTSVI---TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GG 65

Query: 237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGS 296
              +GS     +     +            T+           +     K +V+ + D +
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI------VEYKNIKYIVTGSRDNT 119

Query: 297 VYIWEIEKRQVVMVLKNE 314
           +++W++ K   V     E
Sbjct: 120 LHVWKLPKESSVPDHGEE 137

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 18/90 (20%)

Query: 120 SFSAHDKPV-SCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH 178
           +   H   V +CL    + + +I+G DD +I      ++ D            L +   H
Sbjct: 7   TLRGHMTSVITCL--QFEDNYVITGADDKMI------RVYDSINKK------FLLQLSGH 52

Query: 179 NDSVTAITCCIGSFNSIIISCSMDCTCKFW 208
           +  V A+     +   I++S S D T + W
Sbjct: 53  DGGVWALKY---AHGGILVSGSTDRTVRVW 79

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 9/87 (10%), Positives = 26/87 (29%), Gaps = 15/87 (17%)

Query: 124 HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVT 183
           H    +        ++L+SG ++       I+        +     L+    +   D + 
Sbjct: 281 HTNLSAITTFYVSDNILVSGSEN----QFNIY--------NLRSGKLVHANILKDADQIW 328

Query: 184 AITCCIGSFNSIIISCSMDCTCKFWRL 210
           ++        +++ +   D       L
Sbjct: 329 SVNF---KGKTLVAAVEKDGQSFLEIL 352

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 6e-08
 Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 3/133 (2%)

Query: 169 DLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGL 228
           +    +FV   +       C+   + +++S S D T + W +  G  L  +     ++  
Sbjct: 164 NTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC 223

Query: 229 ALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNL 288
                +    +   DG I    L      +   G   +     H G V  +    +   +
Sbjct: 224 IRFDNKR-IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQI 280

Query: 289 VSAAEDGSVYIWE 301
           VS++ D ++ IW+
Sbjct: 281 VSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 12/154 (7%)

Query: 56  HISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG 115
           +I   +G  ++ ++N  +   +  +   +             + +G     +    +  G
Sbjct: 150 YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA-CLQYRDRLVVSGSSDNTIRLWDIECG 208

Query: 116 DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF 175
             LR    H++ V C++       ++SG  DG    + ++ LV           L L+  
Sbjct: 209 ACLRVLEGHEELVRCIRFDNK--RIVSGAYDG---KIKVWDLVAALDPRAPAGTLCLRTL 263

Query: 176 VAHNDSVTAITCCIGSFN-SIIISCSMDCTCKFW 208
           V H+  V  +      F+   I+S S D T   W
Sbjct: 264 VEHSGRVFRL-----QFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 9e-07
 Identities = 35/239 (14%), Positives = 72/239 (30%), Gaps = 23/239 (9%)

Query: 118 LRSFSAHDKPVSCLKISPDGSLLISGGDDGVI-----ATVPIFQLVDEHTD--------- 163
           +   S   K V CL    D   ++SG  D  I      T+   +++  HT          
Sbjct: 8   IHCRSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 164 ----DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV 219
                 + D  +    V   + +  +     +   +  +  M  TC   R +    +++ 
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 220 TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV 279
           T       L       +        ++     +          + + TL     G+    
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI---A 182

Query: 280 MMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVVK 338
            +    + +VS + D ++ +W+IE    + VL+               I      G +K
Sbjct: 183 CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 241

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 23/156 (14%), Positives = 52/156 (33%), Gaps = 18/156 (11%)

Query: 3   HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTG 62
                ++ I+++S +  I  +N S+   +   +G +     L +  +  ++ S       
Sbjct: 143 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSS------ 196

Query: 63  SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD------ 116
             ++ L+++     L  +   E +       D   + +G   G +    +          
Sbjct: 197 DNTIRLWDIECGACLRVLEGHEELVR-CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255

Query: 117 ---ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVI 149
               LR+   H   V  L    D   ++S   D  I
Sbjct: 256 GTLCLRTLVEHSGRVFRL--QFDEFQIVSSSHDDTI 289

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 32/248 (12%), Positives = 61/248 (24%), Gaps = 39/248 (15%)

Query: 94  DGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP 153
           D   + +G     +        +  R  + H   V CL+      +  S      +  V 
Sbjct: 24  DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 83

Query: 154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI------------------ 195
             ++++           +              +  +    S                   
Sbjct: 84  TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 143

Query: 196 -------IISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIY 247
                  I+S S D T K W       + T+      I  L          +  SD  I 
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTIR 201

Query: 248 KGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV 307
             L   +    +                 +   +  + K +VS A DG + +W++     
Sbjct: 202 --LWDIECGACLRV---------LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALD 250

Query: 308 VMVLKNEL 315
                  L
Sbjct: 251 PRAPAGTL 258

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 171 MLQKFVAHNDSVTAITCCIGSFN-SIIISCSMDCTCKFWRLLNGTHLSTVT 220
            LQ+    +++   + C    ++   I+S   D T K W          +T
Sbjct: 4   SLQRIHCRSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILT 52

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 7e-08
 Identities = 36/315 (11%), Positives = 77/315 (24%), Gaps = 57/315 (18%)

Query: 89  LATTADGSYLFTGGLSGNVYAISVPKGD---ILRSFSAHDKPVSCLKISPDGSLLISGGD 145
           +      S L      G++             L     +  P+ C     +  L I  G 
Sbjct: 17  IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT 76

Query: 146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFV----------------------------- 176
                               N +  +    +                             
Sbjct: 77  VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV 136

Query: 177 -------AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCA----- 224
                  ++N  V      + + +S +I    +   +++RL      +            
Sbjct: 137 IAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI 196

Query: 225 IMGLALDPTETDFFAAGSDGLIY------KGLLKYQSRQQMHKGQELVTLANRHDGVVVS 278
                L   +  +  +  DG +       +G     S++   +   L          V S
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256

Query: 279 VMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSI-------SEMVIATGIGGS 331
           +      K L +A  DG +  W ++ R+ +         S+       + + +AT     
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTF 316

Query: 332 RGCGVVKTGKAGNDS 346
           +    +      N S
Sbjct: 317 KTNAAIDQTIELNAS 331

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 117 ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV 176
           I++   A    +S +KI P  SLL+    DG   ++ +++       D    ++ L + +
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDG---SLTVYKF------DIQAKNVDLLQSL 53

Query: 177 AHNDSVTAITCCIGSFNSIIISCSMDCTCKFW 208
            +   +        +   I +        K  
Sbjct: 54  RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 7/52 (13%), Positives = 23/52 (44%)

Query: 264 ELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNEL 315
           ++V +       +  + ++     L+  + DGS+ +++ + +   + L   L
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL 53

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 35/318 (11%), Positives = 95/318 (29%), Gaps = 34/318 (10%)

Query: 6   PCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGS 65
            C   I++ S +  +  ++  +G  L    G                   +I  +  +  
Sbjct: 25  FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD-------NIIISGSTDR 77

Query: 66  VHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHD 125
                   +    +                  + +G     +    +  G  L     H 
Sbjct: 78  TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 137

Query: 126 KPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAI 185
             V C++       ++SG  D ++                   D   +  +      T  
Sbjct: 138 AAVRCVQYDGRR--VVSGAYDFMV----------------KVWDPETETCLHTLQGHTNR 179

Query: 186 TCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGL 245
              +      ++S S+D + + W +  G  + T+T   ++    ++  +    +  +D  
Sbjct: 180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-SGMELKDNILVSGNADST 238

Query: 246 IYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR 305
           +    +K     Q  +          +        +      ++++++DG+V +W+++  
Sbjct: 239 VKIWDIKTGQCLQTLQ--------GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG 290

Query: 306 QVVMVLKNELAGSISEMV 323
           + +  L    +G    +V
Sbjct: 291 EFIRNLVTLESGGSGGVV 308

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 35/212 (16%), Positives = 71/212 (33%), Gaps = 30/212 (14%)

Query: 96  SYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIF 155
             + +G     V          L +   H   V    +  DG  ++SG  D    ++ ++
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDT---SIRVW 202

Query: 156 QLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH 215
                        D+     +       ++T  +   ++I++S + D T K W +  G  
Sbjct: 203 -------------DVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC 249

Query: 216 LSTVTFPCA--IMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANR-H 272
           L T+  P         L   +     +  DG +   L   ++ + +     LVTL +   
Sbjct: 250 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVK--LWDLKTGEFIR---NLVTLESGGS 304

Query: 273 DGVVVSVMMMNEGKNLVSAAEDGS----VYIW 300
            GVV  +   N        + +G+    + + 
Sbjct: 305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 19/152 (12%), Positives = 51/152 (33%), Gaps = 13/152 (8%)

Query: 3   HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTG 62
                   +++ S +  I  ++  +G  +   +G +S   G+       ++         
Sbjct: 182 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSG------NA 235

Query: 63  SGSVHLYNLWSSTPLHNIPVPEP--VAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS 120
             +V ++++ +   L  +  P     A      + +++ T    G V    +  G+ +R+
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 295

Query: 121 F-----SAHDKPVSCLKISPDGSLLISGGDDG 147
                       V  ++ S    +   G  +G
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 30/224 (13%), Positives = 66/224 (29%), Gaps = 37/224 (16%)

Query: 111 SVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDL 170
              +    +    HD  V    +   G+ ++SG DD    T+ ++  V            
Sbjct: 2   RRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDN---TLKVWSAVTGK--------- 48

Query: 171 MLQKFVAHNDSVTAI-----TCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAI 225
            L+  V H   V +          GS +  +   + +       L   T           
Sbjct: 49  CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK 108

Query: 226 MGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVV--------- 276
             ++     T        G     L+ + +  +  +      ++  +D +V         
Sbjct: 109 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET 168

Query: 277 ----------VSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMV 310
                         +  +G ++VS + D S+ +W++E    +  
Sbjct: 169 CLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT 212

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312
           HD  V++ +    G  +VS ++D ++ +W     + +  L 
Sbjct: 15  HDDHVITCLQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLV 54

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.6 bits (116), Expect = 3e-07
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 14/96 (14%)

Query: 115 GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK 174
           G I +    H+K ++ L  S DG  L S   +G    +  + +    ++   PD      
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEG---HINSWDISTGISNRVFPD------ 52

Query: 175 FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRL 210
              H   +T I          + + S D   K    
Sbjct: 53  --VHATMITGIKTT---SKGDLFTVSWDDHLKVVPA 83

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (90), Expect = 4e-04
 Identities = 12/49 (24%), Positives = 22/49 (44%)

Query: 272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSIS 320
           H+  + ++    +GK L SA  +G +  W+I       V  +  A  I+
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 9e-04
 Identities = 35/249 (14%), Positives = 70/249 (28%), Gaps = 22/249 (8%)

Query: 85  PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS-AHDKPVSCLKISPDGSLLISG 143
            +  L+++ADG  LF+    G++ +  +  G   R F   H   ++ +K +  G L    
Sbjct: 14  AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 73

Query: 144 GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC--------------- 188
            DD +         VD      N             D   A+  C               
Sbjct: 74  WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 133

Query: 189 ----IGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDG 244
                 S  ++               ++   LS  +       +      +  F+     
Sbjct: 134 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 193

Query: 245 LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN--EGKNLVSAAEDGSVYIWEI 302
           L+     +      +    EL    +          +    +   L + + D SV +W +
Sbjct: 194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 253

Query: 303 EKRQVVMVL 311
            K     ++
Sbjct: 254 NKPSDHPII 262

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 11/116 (9%), Positives = 28/116 (24%), Gaps = 7/116 (6%)

Query: 187 CCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLI 246
                  +   S  +               S       +  ++  P          D  +
Sbjct: 189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 248

Query: 247 YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI 302
              +               + +   H    V+ ++      +VSA +D ++  W +
Sbjct: 249 I--VWNMNKPSDHP-----IIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (85), Expect = 0.002
 Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 171 MLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT 220
           + Q    HN ++TA+     +    + S   +     W +  G       
Sbjct: 4   IDQVRYGHNKAITAL--SSSADGKTLFSADAEGHINSWDISTGISNRVFP 51

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 30/251 (11%), Positives = 66/251 (26%), Gaps = 32/251 (12%)

Query: 94  DGSYLFTGGLSGNVYAISVPKGDILRSF----------SAHDKPVSCLKISPDG-----S 138
           +   + T   SG++    + + D  +                     LK           
Sbjct: 78  ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH 137

Query: 139 LLISGGDDGVIATVPIFQLVDEHTD---DKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI 195
            L++    G           DE      + +P   +     +        T    S   +
Sbjct: 138 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL 197

Query: 196 IISCSMD-------CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIY- 247
           I +   +        +         +  S +    +I  +   P  +    A        
Sbjct: 198 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 257

Query: 248 ------KGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE 301
                 +   +  S        +       H   V+S+   + G+ L SA  DG +  W+
Sbjct: 258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317

Query: 302 IEKRQVVMVLK 312
           ++ ++ +  L 
Sbjct: 318 VKTKERITTLN 328

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 28/203 (13%), Positives = 51/203 (25%), Gaps = 29/203 (14%)

Query: 123 AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV 182
           AHD  +  +         +S   DG +  V   +L+D            + K   H+  V
Sbjct: 12  AHDADIFSVSACNS--FTVSCSGDGYLK-VWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-----------FPCAIMGLALD 231
                       ++ + S      F+R+        V               +   L   
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 232 PTETD-----FFAAGSDGLIY---------KGLLKYQSRQQMHKGQELVTLANRHDGVVV 277
            +          A    G  Y         +      +     + Q  V           
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188

Query: 278 SVMMMNEGKNLVSAAEDGSVYIW 300
           SV +   G  + +   +G+V I 
Sbjct: 189 SVDISERGL-IATGFNNGTVQIS 210

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 28/150 (18%), Positives = 46/150 (30%), Gaps = 24/150 (16%)

Query: 177 AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNG-------------THLSTVTFPC 223
           AH+  + +++ C    NS  +SCS D   K W                   H S +    
Sbjct: 12  AHDADIFSVSAC----NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 224 AIMGLALDPTETDFFAAGS-DGLIY---KGLLKYQSRQQMHKGQELVTLANRHDGVVVSV 279
            +  +  D  E    A  S  G +            +    K   L +   +H    +  
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 280 MMMNEGKN---LVSAAEDGSVYIWEIEKRQ 306
              N+      LV+    G+ YIW+     
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFA 157

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 85  PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSC----LKISPDGSLL 140
            V  L+    G  L + G  G +    V   + + + + H   +      L +   G  L
Sbjct: 291 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 350

Query: 141 ISGGDDGV 148
              G   V
Sbjct: 351 AEPGVFDV 358

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 39/322 (12%), Positives = 81/322 (25%), Gaps = 28/322 (8%)

Query: 15  SPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGS----VHLYN 70
           +        +  +G ++    G   P   +   G     AS +      G     V +++
Sbjct: 25  AAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 84

Query: 71  LWSSTPLHNIPVPEP--------VAPLATTADGSYLFTGGLSGNV--YAISVPKGDILRS 120
             +  P  +I +P+             + T DG  L     S       + +      R 
Sbjct: 85  PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM 144

Query: 121 FSAHDK-------PVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQ 173
               D        P +      DGSL            +               + L+  
Sbjct: 145 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-----THTEVFHPEDEFLINH 199

Query: 174 KFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPT 233
              +            G  + I +S            L     +    P     +A    
Sbjct: 200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 259

Query: 234 ETDFFAAGSDG--LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA 291
               +          +K   ++        G+ L      H+   ++V    +      +
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS 319

Query: 292 AEDGSVYIWEIEKRQVVMVLKN 313
             D ++YI + E  + +  +  
Sbjct: 320 TGDKTLYIHDAESGEELRSVNQ 341

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 5e-06
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 56  HISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPK- 114
                +       +   +S        P          +   + TG L  N++  SV + 
Sbjct: 188 LYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 247

Query: 115 GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVI 149
             I+++ +AH   V+ L      + L+S G D  I
Sbjct: 248 MKIIKALNAHKDGVNNLLWETPST-LVSSGADACI 281

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (88), Expect = 7e-04
 Identities = 14/125 (11%), Positives = 31/125 (24%), Gaps = 9/125 (7%)

Query: 178 HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDF 237
                      +     +    S +     W        +    P        +  E   
Sbjct: 171 SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV 230

Query: 238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSV 297
                D  I+           + +  +++   N H   V +++       LVS+  D  +
Sbjct: 231 ATGSLDTNIFI--------YSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACI 281

Query: 298 YIWEI 302
             W +
Sbjct: 282 KRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (88), Expect = 8e-04
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 14/83 (16%)

Query: 129 SCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC 188
              +   +  L+ +G  D     + I+ +             +++   AH D V  +   
Sbjct: 219 GANEEEIEEDLVATGSLDT---NIFIYSVKRPMK--------IIKALNAHKDGVNNLLW- 266

Query: 189 IGSFNSIIISCSMDCTCKFWRLL 211
                S ++S   D   K W ++
Sbjct: 267 --ETPSTLVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 21/106 (19%)

Query: 118 LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA 177
           L++ S H+K ++ L ++P    LISG  DG    +  +     H D              
Sbjct: 6   LKTISGHNKGITALTVNP----LISGSYDG---RIMEWSSSSMHQD-------------- 44

Query: 178 HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC 223
           H++ + ++        S I            +   G+     +   
Sbjct: 45  HSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANN 90

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.3 bits (106), Expect = 7e-06
 Identities = 27/269 (10%), Positives = 62/269 (23%), Gaps = 26/269 (9%)

Query: 62  GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI---- 117
            +G + L +  S   +  I     V     +A G YL   G    +  I +   +     
Sbjct: 40  DAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA 99

Query: 118 -LRSFSAHDKPVSCLKISPDGSLLISGG---------DDGVIATVPIFQLVDEHTDDKNP 167
            ++         S      +    I+G          D   +    I        D +  
Sbjct: 100 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY 159

Query: 168 DDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMG 227
                   +  +         +     +++    D               ++     +  
Sbjct: 160 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT--------SIGAAPFLAD 211

Query: 228 LALDPTETDFFAAGSDGLIYKGL----LKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN 283
              D +   F  A ++      +     +  +   + K       AN        V   +
Sbjct: 212 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS 271

Query: 284 EGKNLVSAAEDGSVYIWEIEKRQVVMVLK 312
              +   +              + V  L+
Sbjct: 272 HLGDGSISLIGTDPKNHPQYAWKKVAELQ 300

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 25/190 (13%), Positives = 51/190 (26%), Gaps = 8/190 (4%)

Query: 62  GSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI---- 117
            +G + L +  +      +     V     +A G YLF  G  G V  I +   +     
Sbjct: 40  DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 99

Query: 118 -LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV 176
            ++  S      +      +    I+G        +   + ++             ++  
Sbjct: 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 159

Query: 177 AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCA--IMGLALDPTE 234
                V AI          I++             +  +L T        +    LD + 
Sbjct: 160 HPEPRVAAIL-ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH 218

Query: 235 TDFFAAGSDG 244
             F  A +  
Sbjct: 219 RYFITAANAR 228

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 17/221 (7%), Positives = 47/221 (21%), Gaps = 15/221 (6%)

Query: 82  VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI 141
           +P   A   +  DG  +      G  +   V    +L+        +  ++   D  +  
Sbjct: 2   IPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAF 58

Query: 142 SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM 201
             G       + I+       +    +   +       +   A+          +   + 
Sbjct: 59  IHGTREG-DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG 117

Query: 202 DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK 261
             T                   +       P +           I+   ++ +       
Sbjct: 118 KPTVIERS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT 176

Query: 262 GQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI 302
                      +    +     + KNL   +        + 
Sbjct: 177 ----------ENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 207

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 24/203 (11%), Positives = 60/203 (29%), Gaps = 24/203 (11%)

Query: 119 RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH 178
            + +  +          D   L       +  +     L         P  + L      
Sbjct: 172 FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL-----I 226

Query: 179 NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN---GTHLSTVTFPCAIMGLALDPTET 235
             S         S  S      ++   K    +N   G +   +    +I+  ++     
Sbjct: 227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE 286

Query: 236 D---FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292
               +  A   G++ K  +K          +++  + N    + +S     + K ++   
Sbjct: 287 FAAYYQGAPEKGVLLKYDVK---------TRKVTEVKNNLTDLRLS----ADRKTVMVRK 333

Query: 293 EDGSVYIWEIEKRQVVMVLKNEL 315
           +DG +Y + +EK +    ++ + 
Sbjct: 334 DDGKIYTFPLEKPEDERTVETDK 356

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 31/317 (9%), Positives = 68/317 (21%), Gaps = 64/317 (20%)

Query: 60  TTGSGSVHLYNLWSSTPLHNIPVPEPVAP--LATTADGSYLF-TGGLSGNVYAISVPKGD 116
           T    ++H+ ++ S T   +  +P+   P       D    +      G++Y I +    
Sbjct: 14  TNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 73

Query: 117 ILR------SFSAHDKPVSCLKISPDGSLLISGGDDGVI---------ATVPIFQLVDEH 161
                          + +    ISPDG  + +  +               + +F   D  
Sbjct: 74  NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 133

Query: 162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFW------------- 208
                    M ++      +        G     +   +   T                 
Sbjct: 134 EAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPD 193

Query: 209 -RLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY---QSRQQMHKGQE 264
                        F            + D   A          LK     +++     + 
Sbjct: 194 VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL 253

Query: 265 LVTLANRHDGVVVSVMMMNE-----------------------------GKNLVSAAEDG 295
             T             ++N                              G  L       
Sbjct: 254 YFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN 313

Query: 296 SVYIWEIEKRQVVMVLK 312
            + ++  +  + V  +K
Sbjct: 314 DLAVFNPDTLEKVKNIK 330

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 8/70 (11%), Positives = 22/70 (31%)

Query: 60  TTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILR 119
                 +  Y+L     +    +      +A    G  L+ GG   ++   +    + ++
Sbjct: 268 YGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327

Query: 120 SFSAHDKPVS 129
           +       +S
Sbjct: 328 NIKLPGGDMS 337

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 8e-05
 Identities = 23/242 (9%), Positives = 51/242 (21%), Gaps = 18/242 (7%)

Query: 89  LATTADGSYLFTGGLSGNVYAISVPKGDILRSFS-AHDKPVSCLKISPDGS-LLISGGDD 146
            A  A   Y+       N++ + V    + +S             ++PD     +     
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 147 GVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCK 206
           G I        +D  T        +         S+ +    I      + +        
Sbjct: 62  GDI------YGIDLDTCKNTFHANLSSVPGEVGRSMYSFA--ISPDGKEVYATVNPTQRL 113

Query: 207 FWRLLNGTHLSTVTFP-----CAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK 261
               +       V           +     P +     A  DG +Y        +  +  
Sbjct: 114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA-GPDIYKMDVKT 172

Query: 262 GQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISE 321
           G+  V L               +             +       +     ++     +  
Sbjct: 173 GKYTVAL--PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 230

Query: 322 MV 323
             
Sbjct: 231 GY 232

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 42/299 (14%), Positives = 84/299 (28%), Gaps = 21/299 (7%)

Query: 60  TTGSGSVHLYNLWSS---TPLHNIPVPEPVAPLATTADGSYLFTGGLSGN---VYAISVP 113
           +  S  +H++NL      T    + VP  V P+  + D  YL+ G         Y I+  
Sbjct: 10  SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD 69

Query: 114 KG-DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLML 172
            G     + SA    ++ +     G  +  G  +               T  ++   + +
Sbjct: 70  DGALTFAAESALPGSLTHISTDHQGQFVFVGSYN---------AGNVSVTRLEDGLPVGV 120

Query: 173 QKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDP 232
              V   D   +      +    + +   D  C F    +G  ++              P
Sbjct: 121 VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP-AEVTTVEGAGP 179

Query: 233 TETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA 292
               F            L       ++      +      D +  +        ++    
Sbjct: 180 RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP 239

Query: 293 EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATGIGGSRGCGVVKTGK----AGNDSG 347
           +   +Y  +     + +   +E    +S+          RG  V  +GK    AG  S 
Sbjct: 240 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSH 298

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 33/291 (11%), Positives = 86/291 (29%), Gaps = 32/291 (10%)

Query: 45  TFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLF-TGGL 103
           TFA   +IA S       S ++ + ++ S+     IPV         + DG+ ++     
Sbjct: 2   TFA---YIANS------ESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAH 52

Query: 104 SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATV----------- 152
           S +V  I     +++ +  A   P           + ++      ++ +           
Sbjct: 53  SNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV 112

Query: 153 -----PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI-IISCSMDCTCK 206
                P+   +          +   +     N    A+   +    S   I+ + D T  
Sbjct: 113 KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKV 172

Query: 207 F----WRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG 262
           +      +      +        + +   P+       G+   +      + +   +  G
Sbjct: 173 YVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232

Query: 263 QELVTLANRHDGVVVSVMMMNEGKNL-VSAAEDGSVYIWEIEKRQVVMVLK 312
              +T           + +  +GK + V+ +   +V + +     +   + 
Sbjct: 233 TNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 24/241 (9%)

Query: 71  LWSSTP--------LHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS 122
           +++  P        + + PV   +  LA+  DG+   T    G + +I+ P G+  +  +
Sbjct: 7   IYADKPIELAPAKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSIT-PDGNQ-QIHA 64

Query: 123 AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV 182
             +  VS L  + +G L+ +G +   I  V                D  ++  +   D++
Sbjct: 65  TVEGKVSGLAFTSNGDLVATGWNADSIPVVS-----------LVKSDGTVETLLTLPDAI 113

Query: 183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC-AIMGLALDPTETDFFAAG 241
                   S    + + S         ++  +    +  P  A           +     
Sbjct: 114 FLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF 173

Query: 242 SDGLIYKGLLKYQSRQQMHKGQELVTLANRH--DGVVVSVMMMNEGKNLVSAAEDGSVYI 299
            + L      K    +      +             +       EG    +     SV  
Sbjct: 174 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVR 233

Query: 300 W 300
            
Sbjct: 234 I 234

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	387
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.97
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.91
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.82
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.8
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.77
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.74
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.64
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.56
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.37
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.37
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.36
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.34
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.33
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.31
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.28
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.27
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.26
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.23
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.22
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.17
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.17
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.16
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.15
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.99
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.98
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.87
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.73
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.65
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.56
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.54
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.54
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.49
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.46
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.39
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.39
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.34
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.33
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.29
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.14
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.13
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.12
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.05
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.02
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.0
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.92
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.83
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.47
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.3
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.12
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.57
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	96.46
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.39
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.3
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.17
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.03
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.78
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.52
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.29
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	94.74
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.66
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.71
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.69
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	88.37
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	88.24
d1suua_	304	DNA gyrase A C-terminal domain {Lyme disease spiro	86.03
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	80.96

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-43  Score=305.38  Aligned_cols=271  Identities=15%  Similarity=0.237  Sum_probs=233.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCce-----eEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAI-----LAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP   76 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~   76 (387)
                      ++|||+|++||+|+ ||.|+|||+.++..     .....+|.+.|.+++|+|++.+    +++++.||.|++||+.....
T Consensus        57 v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~----l~s~~~dg~i~iwd~~~~~~  131 (337)
T d1gxra_          57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT----LIVGGEASTLSIWDLAAPTP  131 (337)
T ss_dssp             EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE----EEEEESSSEEEEEECCCC--
T ss_pred             EEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCE----EEEeeccccccccccccccc
Confidence            58999999999998 79999999976543     2234578999999999996544    44589999999999876543


Q ss_pred             --ccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621           77 --LHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVP  153 (387)
Q Consensus        77 --~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  153 (387)
                        ...+. +...+.+++|+|++.++++++.++.|++|++.++++......|...|.+++|++++..+++++.|+.+++||
T Consensus       132 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d  211 (337)
T d1gxra_         132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD  211 (337)
T ss_dssp             EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              33333 567899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCC
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPT  233 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  233 (387)
                      +            .....+..+ .|...|.+++|+|++  +++++++.|+.+++||+++++......+...|.+++|+|+
T Consensus       212 ~------------~~~~~~~~~-~~~~~i~~l~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~  276 (337)
T d1gxra_         212 L------------REGRQLQQH-DFTSQIFSLGYCPTG--EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC  276 (337)
T ss_dssp             T------------TTTEEEEEE-ECSSCEEEEEECTTS--SEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTT
T ss_pred             c------------ccceeeccc-ccccceEEEEEcccc--cccceeccccccccccccccccccccccccccceEEECCC
Confidence            9            344444443 588899999999875  8999999999999999999998877778999999999999


Q ss_pred             CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621          234 ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       234 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  302 (387)
                      +++|++++.||.|++||+..+        ..+...  .|...|.+++|+|++++|++|+.||+|+|||+
T Consensus       277 g~~l~s~s~Dg~i~iwd~~~~--------~~~~~~--~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         277 GKWFVSTGKDNLLNAWRTPYG--------ASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTC--------CEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCC--------CEEEEc--cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            999999999999999999873        233322  58899999999999999999999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.9e-43  Score=299.84  Aligned_cols=276  Identities=16%  Similarity=0.175  Sum_probs=231.9

Q ss_pred             CccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc--
Q 035621            1 LLHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH--   78 (387)
Q Consensus         1 vl~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~--   78 (387)
                      +++++|+|+.|+.++ ++.|.+||+.+++....+.+|...|++++|+|++.++    ++|+.||.|++||+.+++...  
T Consensus        22 ~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~l----atg~~dg~i~iwd~~~~~~~~~~   96 (311)
T d1nr0a1          22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC----ASGDVHGNVRIWDTTQTTHILKT   96 (311)
T ss_dssp             CCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEE----EEEETTSEEEEEESSSTTCCEEE
T ss_pred             EEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeE----eccccCceEeeeeeecccccccc
Confidence            478999999999986 5679999999999999999999999999999966554    459999999999998876543  


Q ss_pred             ccC-CCCCeeeEEeccCCCEEEEecC--CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEeC
Q 035621           79 NIP-VPEPVAPLATTADGSYLFTGGL--SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL-LISGGDDGVIATVPI  154 (387)
Q Consensus        79 ~~~-~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~  154 (387)
                      .+. |..+|.+++|+|++++|++++.  +..+++|++++++....+.+|...|++++|+|++++ +++|+.|+.|++||+
T Consensus        97 ~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~  176 (311)
T d1nr0a1          97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG  176 (311)
T ss_dssp             EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET
T ss_pred             ccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc
Confidence            233 6789999999999999999875  456999999999999999999999999999999885 788999999999999


Q ss_pred             CcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--------cCCcee
Q 035621          155 FQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--------FPCAIM  226 (387)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~v~  226 (387)
                                  ........+..|..+|.++.++|++  +++++++.|+.|++||+.++.....+.        |...|.
T Consensus       177 ------------~~~~~~~~~~~~~~~i~~v~~~p~~--~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~  242 (311)
T d1nr0a1         177 ------------PPFKFKSTFGEHTKFVHSVRYNPDG--SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF  242 (311)
T ss_dssp             ------------TTBEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred             ------------cccccccccccccccccccccCccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence                        5667778888999999999999875  899999999999999999998887775        356799


Q ss_pred             EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      +++|+|++++|++|+.||.|++||++++.        .+..+...+......+.+.+++++|++++.||.|++||.+
T Consensus       243 ~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~--------~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         243 GLTWSPDGTKIASASADKTIKIWNVATLK--------VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTE--------EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             ccccCCCCCEEEEEeCCCeEEEEECCCCc--------EEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            99999999999999999999999998732        2222221222222233444456689999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-43  Score=299.16  Aligned_cols=275  Identities=17%  Similarity=0.275  Sum_probs=247.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      |+|+|++++||+|+.||+|+|||+.+++.+.++.+|..+|.+++|+|+..+.+.    +..++.+..|+....+....+.
T Consensus        23 l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   98 (317)
T d1vyhc1          23 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS----CSADMTIKLWDFQGFECIRTMH   98 (317)
T ss_dssp             EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEE----EETTSCCCEEETTSSCEEECCC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccc----cccccccccccccccccccccc
Confidence            679999999999999999999999999999999999999999999996655544    7889999999988777666555


Q ss_pred             -CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           82 -VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        82 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                       +...+.++.++|+++.+++++.|+.+++||+++++.+..+..|...+.+++|+|++++|++++.|+.|++|++      
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~------  172 (317)
T d1vyhc1          99 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV------  172 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET------
T ss_pred             cccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEee------
Confidence             6678999999999999999999999999999999999999999999999999999999999999999999999      


Q ss_pred             CCCCCCCCccceEeeeccCCCeEEEEEeeCCC------------------CceEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 035621          161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSF------------------NSIIISCSMDCTCKFWRLLNGTHLSTVT-F  221 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~  221 (387)
                            ........+..|...+.++.++|+..                  +.++++++.|+.|++||+++++++..+. +
T Consensus       173 ------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  246 (317)
T d1vyhc1         173 ------ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  246 (317)
T ss_dssp             ------TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ------ccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence                  56667788888999999999877642                  2478999999999999999999998887 6


Q ss_pred             CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          222 PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       222 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      ...|.+++|+|++++|++++.||.|++||+.+..         +...+.+|.+.|++++|+|++++|++|+.||+|+|||
T Consensus       247 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---------CCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc---------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            7899999999999999999999999999998732         2233457999999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-40  Score=284.94  Aligned_cols=266  Identities=17%  Similarity=0.238  Sum_probs=229.8

Q ss_pred             ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc------cCCCCCeeeEEeccCCCEEEEec
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN------IPVPEPVAPLATTADGSYLFTGG  102 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~  102 (387)
                      +.+..+ .|..+|.+++|+|++.++++    |+ ||.|++||+.++.....      ..|.+.|.+++|+|++++|++|+
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~lat----g~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~  116 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYT----GG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG  116 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEE----EC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEE----EE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEee
Confidence            334455 69999999999997665553    65 89999999977644332      23667899999999999999999


Q ss_pred             CCCcEEEEeCCCC--ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC
Q 035621          103 LSGNVYAISVPKG--DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND  180 (387)
Q Consensus       103 ~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (387)
                      .||.|++||+...  +....+..|...+.+++|+|++.++++++.|+.|++|++            ...........|..
T Consensus       117 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~------------~~~~~~~~~~~~~~  184 (337)
T d1gxra_         117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL------------HNQTLVRQFQGHTD  184 (337)
T ss_dssp             SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET------------TTTEEEEEECCCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc------------cccccccccccccc
Confidence            9999999998754  456677889999999999999999999999999999999            55667778888999


Q ss_pred             CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccc
Q 035621          181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMH  260 (387)
Q Consensus       181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  260 (387)
                      .+.+++|++++  ..+++++.|+.+++||+++++.+..+.+...|.+++|+|+++++++++.|+.+++||++...     
T Consensus       185 ~v~~l~~s~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~-----  257 (337)
T d1gxra_         185 GASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-----  257 (337)
T ss_dssp             CEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-----
T ss_pred             ccccccccccc--cccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccc-----
Confidence            99999998875  89999999999999999999999999999999999999999999999999999999998732     


Q ss_pred             ccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          261 KGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                         ..  ....|...|++++|+|++++|++++.||.|++||+.+++++..+..  .+.|+++.|++
T Consensus       258 ---~~--~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~s~  316 (337)
T d1gxra_         258 ---KY--QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE--SSSVLSCDISV  316 (337)
T ss_dssp             ---EE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSCEEEEEECT
T ss_pred             ---cc--cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccC--CCCEEEEEEeC
Confidence               21  1236899999999999999999999999999999999999988763  45788888865

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-41  Score=295.20  Aligned_cols=297  Identities=12%  Similarity=0.078  Sum_probs=232.6

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCc--eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGA--ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~   79 (387)
                      ++|+|||++||+|+.||.|+|||..+++  .+..+++|.++|++++|+|++.+    +++++.|+.|++||+.++.....
T Consensus        13 ~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~----l~s~s~D~~i~vWd~~~~~~~~~   88 (371)
T d1k8kc_          13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR----IVTCGTDRNAYVWTLKGRTWKPT   88 (371)
T ss_dssp             EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTE----EEEEETTSCEEEEEEETTEEEEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCE----EEEEECCCeEEEEeecccccccc
Confidence            5899999999999999999999998775  56778999999999999996554    44589999999999987754333


Q ss_pred             c---CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce----eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621           80 I---PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI----LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATV  152 (387)
Q Consensus        80 ~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  152 (387)
                      +   .+...|.+++|+|+++.|++++.|+.+++|++.....    ......|...|.+++|+|++++|++|+.|+.|++|
T Consensus        89 ~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~  168 (371)
T d1k8kc_          89 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF  168 (371)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEE
Confidence            2   3567899999999999999999999999999876543    33456789999999999999999999999999999


Q ss_pred             eCCcccccCC------CCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCce
Q 035621          153 PIFQLVDEHT------DDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAI  225 (387)
Q Consensus       153 d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v  225 (387)
                      |+........      ...............|...|.+++|+|++  ++|++++.|+.|++||+.+++.+..+. +..+|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  246 (371)
T d1k8kc_         169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG--SRVAWVSHDSTVCLADADKKMAVATLASETLPL  246 (371)
T ss_dssp             ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS--SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCE
T ss_pred             eeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc--ccccccccCCcceEEeeecccceeeeecccccc
Confidence            9854321110      11112344566778899999999999985  899999999999999999999998887 56789


Q ss_pred             eEEEeCCCCCeEEEEccCCcEEEEeccccccccccc--------------------------------cceeEeeccccc
Q 035621          226 MGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK--------------------------------GQELVTLANRHD  273 (387)
Q Consensus       226 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------------------------~~~~~~~~~~~~  273 (387)
                      .+++|+|+++++++|. |+.+++|............                                ..........|.
T Consensus       247 ~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~  325 (371)
T d1k8kc_         247 LAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHK  325 (371)
T ss_dssp             EEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSS
T ss_pred             eeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceeccccc
Confidence            9999999998777655 7777776654321110000                                000011123488


Q ss_pred             ccEEEEEEecCC----CEEEEEeCCCcEEEEECCCc
Q 035621          274 GVVVSVMMMNEG----KNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       274 ~~v~~~~~s~~~----~~l~s~~~dg~i~iwd~~~~  305 (387)
                      +.|+++++.+.+    ..|+|++.||.|++||+++.
T Consensus       326 ~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         326 NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             SCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             CCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence            999999998754    36899999999999998763

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.6e-40  Score=278.92  Aligned_cols=260  Identities=15%  Similarity=0.128  Sum_probs=218.5

Q ss_pred             CCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCC
Q 035621           37 SRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKG  115 (387)
Q Consensus        37 ~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  115 (387)
                      +.+.+..++++|++...+.    + .++.+.+|++++.+....+. |.+.|++++|+|+|++|++|+.||.|++||+.++
T Consensus        16 ~r~~~~~~a~~~~g~~l~~----~-~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQY----C-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEE----E-ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred             CCCCeEEEEEcCCCCEEEE----E-eCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecc
Confidence            4445678899996655442    3 46779999999988877765 7789999999999999999999999999999887


Q ss_pred             cee--EEccCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC
Q 035621          116 DIL--RSFSAHDKPVSCLKISPDGSLLISGGD--DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS  191 (387)
Q Consensus       116 ~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  191 (387)
                      +..  ..+..|..+|.+++|+|+++++++++.  +..+++|++            ........+.+|...|.+++|+|++
T Consensus        91 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~------------~~~~~~~~l~~h~~~v~~v~~~~~~  158 (311)
T d1nr0a1          91 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF------------DTGTSNGNLTGQARAMNSVDFKPSR  158 (311)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET------------TTCCBCBCCCCCSSCEEEEEECSSS
T ss_pred             ccccccccccccCcccccccccccccccccccccccccccccc------------ccccccccccccccccccccccccc
Confidence            643  557789999999999999999999886  456999998            4555667788999999999999885


Q ss_pred             CCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecc
Q 035621          192 FNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLAN  270 (387)
Q Consensus       192 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  270 (387)
                       ...|++|+.|+.|++||+++++....+. +...|.++.|+|+++++++++.|+.|++||..............  ....
T Consensus       159 -~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~--~~~~  235 (311)
T d1nr0a1         159 -PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS--LKNV  235 (311)
T ss_dssp             -SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT--SSSC
T ss_pred             -eeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccc--cccc
Confidence             3468899999999999999999888886 67899999999999999999999999999998755433222111  1234


Q ss_pred             cccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccC
Q 035621          271 RHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA  316 (387)
Q Consensus       271 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  316 (387)
                      +|...|++++|+|++++|++|+.||.|+|||++++++++.+..+..
T Consensus       236 ~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~  281 (311)
T d1nr0a1         236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR  281 (311)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             cccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC
Confidence            7899999999999999999999999999999999999999987654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-40  Score=290.37  Aligned_cols=280  Identities=17%  Similarity=0.204  Sum_probs=221.9

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEecc------------------CCCCCceeEEEcCccceeeeccccCCCC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFS------------------GSRSPRRGLTFAGKPFIAASHISPTTGS   63 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~d   63 (387)
                      ++|||||++||+|+ |+.|+|||+.+++.+..+.                  .|...|++++|+|++.+    +++++.|
T Consensus        68 l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~----l~s~~~d  142 (388)
T d1erja_          68 VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF----LATGAED  142 (388)
T ss_dssp             EEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE----EEEEETT
T ss_pred             EEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCc----ceecccc
Confidence            67999999999997 8999999999988876664                  35666999999996554    4458999


Q ss_pred             CeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEc-CCCCEEE
Q 035621           64 GSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKIS-PDGSLLI  141 (387)
Q Consensus        64 ~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~  141 (387)
                      |.|++||...++...... |...|.++++++++..+++++.++.+++||.++.........+... .++.+. +++++|+
T Consensus       143 g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~  221 (388)
T d1erja_         143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV-TTVAVSPGDGKYIA  221 (388)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE-EEEEECSTTCCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccccccc-ccccccCCCCCeEE
Confidence            999999999988777666 6789999999999999999999999999999988887777655544 455555 4889999


Q ss_pred             EEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE----
Q 035621          142 SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS----  217 (387)
Q Consensus       142 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~----  217 (387)
                      +++.|+.|++||.........     .........+|...|.+++|+|++  ++|++++.|+.|++||++++....    
T Consensus       222 ~~~~d~~i~i~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~l~~s~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~  294 (388)
T d1erja_         222 AGSLDRAVRVWDSETGFLVER-----LDSENESGTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKT  294 (388)
T ss_dssp             EEETTSCEEEEETTTCCEEEE-----EC------CCCSSCEEEEEECTTS--SEEEEEETTSEEEEEEC-----------
T ss_pred             EEcCCCeEEEeecccCcccee-----eccccccccCCCCCEEEEEECCCC--CEEEEEECCCcEEEEeccCCcccccccc
Confidence            999999999999943211100     011122335688999999999875  899999999999999998654321    


Q ss_pred             --------E-EecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEE------e
Q 035621          218 --------T-VTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMM------M  282 (387)
Q Consensus       218 --------~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------s  282 (387)
                              . ..+...|.+++|+|++++|++|+.||.|++||+.++        .. ...+.+|.+.|.++++      +
T Consensus       295 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~--------~~-~~~l~~H~~~V~~~~~~~~~~~s  365 (388)
T d1erja_         295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG--------NP-LLMLQGHRNSVISVAVANGSSLG  365 (388)
T ss_dssp             ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC--------CE-EEEEECCSSCEEEEEECSSCTTC
T ss_pred             ccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC--------cE-EEEEeCCCCCEEEEEEecCcccC
Confidence                    1 225678999999999999999999999999999873        22 3334589999999975      5


Q ss_pred             cCCCEEEEEeCCCcEEEEECC
Q 035621          283 NEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       283 ~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      |++++|++|+.||+|+||+++
T Consensus       366 pd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         366 PEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEeee
Confidence            688999999999999999975

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-39  Score=278.95  Aligned_cols=273  Identities=16%  Similarity=0.203  Sum_probs=234.5

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc---
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH---   78 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~---   78 (387)
                      ++|+|++++||+|+.||+|+|||+.+++.+..+..|..+|.+++|+|++.+.    ++++.|+.+.+|+........   
T Consensus        61 l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l----~~~~~d~~i~~~~~~~~~~~~~~~  136 (340)
T d1tbga_          61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV----ACGGLDNICSIYNLKTREGNVRVS  136 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEE----EEEETTCCEEEEESSSSCSCCCEE
T ss_pred             EEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceee----eeecccceeecccccccccccccc
Confidence            5899999999999999999999999999999999999999999999965544    448999999999986654322   


Q ss_pred             -ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcc
Q 035621           79 -NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQL  157 (387)
Q Consensus        79 -~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  157 (387)
                       .+..............+..+.....+.....+.............+...+....+.+.+.++++++.|+.|++||+   
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~---  213 (340)
T d1tbga_         137 RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV---  213 (340)
T ss_dssp             EEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEET---
T ss_pred             eecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEEC---
Confidence             2333333444444445567778888999999998888777777788889999999999999999999999999999   


Q ss_pred             cccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceeEEEeCCCC
Q 035621          158 VDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT---FPCAIMGLALDPTE  234 (387)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~  234 (387)
                               .....+..+.+|...|++++|+|++  ++|++++.|+.|++||++....+..+.   +...+.+++|+|++
T Consensus       214 ---------~~~~~~~~~~~h~~~i~~v~~~p~~--~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  282 (340)
T d1tbga_         214 ---------REGMCRQTFTGHESDINAICFFPNG--NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG  282 (340)
T ss_dssp             ---------TTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSS
T ss_pred             ---------CCCcEEEEEeCCCCCeEEEEECCCC--CEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCC
Confidence                     5677888899999999999999875  899999999999999999998888775   45679999999999


Q ss_pred             CeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          235 TDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       235 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      ++|++|+.||.|++||+..+         .....+.+|.++|++++|+|++++|++|+.||.|+|||
T Consensus       283 ~~l~~g~~dg~i~iwd~~~~---------~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         283 RLLLAGYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CEEEEEECCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999873         23334468999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-38  Score=278.58  Aligned_cols=295  Identities=15%  Similarity=0.224  Sum_probs=235.6

Q ss_pred             EeeCCCCcEEEEeCCCCcee----EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC------
Q 035621           12 LTSSPEGPITAYNPSSGAIL----AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP------   81 (387)
Q Consensus        12 ~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~------   81 (387)
                      +.+..++...+|+....+..    ....+|.+.|++++|+|++.+++    +|+ |+.|++||+.+++.+..+.      
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~la----sg~-d~~i~iW~~~~~~~~~~~~~~~~~~  106 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLA----TGC-NKTTQVYRVSDGSLVARLSDDSAAN  106 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEE----EEC-BSCEEEEETTTCCEEEEECC-----
T ss_pred             cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEE----EEe-CCeEEEEEecccceEeeeccccccc
Confidence            45667788999997654322    22336999999999999765554    365 8999999999887665443      


Q ss_pred             -------------CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 035621           82 -------------VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGV  148 (387)
Q Consensus        82 -------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  148 (387)
                                   +...|.+++|+|++++|++|+.||.|++||...++.+..+.+|...|.++++++++..+++++.++.
T Consensus       107 ~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  186 (388)
T d1erja_         107 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT  186 (388)
T ss_dssp             ------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccccccccccee
Confidence                         3456999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--------
Q 035621          149 IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--------  220 (387)
Q Consensus       149 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------  220 (387)
                      +++||.            .......... +.....++.+.+. ++.+|++++.|+.|++||+.++.....+.        
T Consensus       187 i~~~d~------------~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~  252 (388)
T d1erja_         187 VRIWDL------------RTGQCSLTLS-IEDGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG  252 (388)
T ss_dssp             EEEEET------------TTTEEEEEEE-CSSCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CC
T ss_pred             eeeeec------------cccccccccc-cccccccccccCC-CCCeEEEEcCCCeEEEeecccCccceeeccccccccC
Confidence            999999            3444444444 4445556666654 36899999999999999999998877764        


Q ss_pred             cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc---cceeEeecccccccEEEEEEecCCCEEEEEeCCCcE
Q 035621          221 FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK---GQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSV  297 (387)
Q Consensus       221 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  297 (387)
                      +...|.+++|+|++++|++++.||.|++||+..........   ..........|...|++++|+|++++|++|+.||.|
T Consensus       253 h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i  332 (388)
T d1erja_         253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV  332 (388)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEE
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEE
Confidence            45689999999999999999999999999998754332211   112233345788999999999999999999999999


Q ss_pred             EEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          298 YIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       298 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      ++||+.+++++..+++|. +.|+++.++.
T Consensus       333 ~vwd~~~~~~~~~l~~H~-~~V~~~~~~~  360 (388)
T d1erja_         333 LFWDKKSGNPLLMLQGHR-NSVISVAVAN  360 (388)
T ss_dssp             EEEETTTCCEEEEEECCS-SCEEEEEECS
T ss_pred             EEEECCCCcEEEEEeCCC-CCEEEEEEec
Confidence            999999999999999874 4888887654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-38  Score=268.89  Aligned_cols=271  Identities=14%  Similarity=0.189  Sum_probs=214.1

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEecc-CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFS-GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      |+|+|++++|++|+.||.|++||+++++.+..+. +|...|++++|+|++.+..     ++.|+.+++|+..........
T Consensus        18 l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~-----~~~d~~v~~~~~~~~~~~~~~   92 (299)
T d1nr0a2          18 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT-----VSWDDHLKVVPAGGSGVDSSK   92 (299)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE-----EETTTEEEEECSSSSSSCTTS
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeec-----ccceeeEEEeccCCccccccc
Confidence            6899999999999999999999999999888884 6899999999999765433     678999999998654332221


Q ss_pred             ----CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621           81 ----PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus        81 ----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                          .+...+.+++|+|+++++++++ ++.+.+|+..  +.....  ....+.+++|+|+++++++++.||.|++||+. 
T Consensus        93 ~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~-  166 (299)
T d1nr0a2          93 AVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLS-  166 (299)
T ss_dssp             CCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEE-
T ss_pred             cccccccccccccccccccccccccc-cccccccccc--cccccc--cccccccccccccccccccccccccccccccc-
Confidence                2567789999999999877765 5689999853  333322  34568899999999999999999999999983 


Q ss_pred             ccccCCCCCCCCccc-eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceeEEEeC
Q 035621          157 LVDEHTDDKNPDDLM-LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIMGLALD  231 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~  231 (387)
                                 .... ......|...|.+++|+|++  .+|++++.|+.|++||+.++.......    |...|.+++|+
T Consensus       167 -----------~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s  233 (299)
T d1nr0a2         167 -----------GASVSEVKTIVHPAEITSVAFSNNG--AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS  233 (299)
T ss_dssp             -----------TTEEEEEEEEECSSCEEEEEECTTS--SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred             -----------ccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence                       2222 23445789999999999875  899999999999999998877654432    56789999999


Q ss_pred             CCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 035621          232 PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIE  303 (387)
Q Consensus       232 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  303 (387)
                      |++++|++|+.||.|++||++.....      ........+...+.++.| +++++|++++.||+|++||+.
T Consensus       234 ~~~~~l~sgs~dg~i~iwd~~~~~~~------~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         234 PDNVRLATGSLDNSVIVWNMNKPSDH------PIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TTSSEEEEEETTSCEEEEETTCTTSC------CEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             ccccceEEEcCCCEEEEEECCCCCcc------eEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            99999999999999999999874321      112222234456666655 567899999999999999984

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-38  Score=268.04  Aligned_cols=278  Identities=16%  Similarity=0.256  Sum_probs=243.7

Q ss_pred             EEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEE
Q 035621           22 AYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFT  100 (387)
Q Consensus        22 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~  100 (387)
                      .|.+. .....+|++|.++|++++|+|++.    .+++++.||+|++||+.+++.+..+. |...|.+++|+|++.++++
T Consensus         2 ~w~p~-~~~~~~L~GH~~~I~~l~~sp~~~----~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~   76 (317)
T d1vyhc1           2 EWIPR-PPEKYALSGHRSPVTRVIFHPVFS----VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS   76 (317)
T ss_dssp             CCCCC-SSCSCEEECCSSCEEEEEECSSSS----EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             ccCCC-CCccEEEcCCCCCeEEEEEcCCCC----EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccc
Confidence            45543 344567899999999999999654    45559999999999999999988887 6789999999999999999


Q ss_pred             ecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCC
Q 035621          101 GGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHND  180 (387)
Q Consensus       101 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (387)
                      +..++.+..|+....+....+..|...+.++.|+|+++.+++++.|+.+++||+            ........+..|..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~------------~~~~~~~~~~~~~~  144 (317)
T d1vyhc1          77 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV------------QTGYCVKTFTGHRE  144 (317)
T ss_dssp             EETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET------------TTCCEEEEEECCSS
T ss_pred             cccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeec------------ccceeeeEEccCCC
Confidence            999999999999999988888999999999999999999999999999999999            56677888899999


Q ss_pred             CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCC--------------------CeEEE
Q 035621          181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTE--------------------TDFFA  239 (387)
Q Consensus       181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~--------------------~~l~~  239 (387)
                      .+.++++++++  .+|++++.|+.|++|++.+++....+. +...+.+++++|++                    ..+++
T Consensus       145 ~~~~~~~~~~~--~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (317)
T d1vyhc1         145 WVRMVRPNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  222 (317)
T ss_dssp             CEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             cceeeecccCC--CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence            99999998875  899999999999999999999888886 66788888888754                    46889


Q ss_pred             EccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCc
Q 035621          240 AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSI  319 (387)
Q Consensus       240 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v  319 (387)
                      ++.|+.|++|++.++        . ....+.+|...|.+++|+|++++|++|+.||.|++||+.+++++..+..|. +.|
T Consensus       223 ~~~d~~i~~~~~~~~--------~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-~~V  292 (317)
T d1vyhc1         223 GSRDKTIKMWDVSTG--------M-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE-HFV  292 (317)
T ss_dssp             EETTSEEEEEETTTT--------E-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS-SCE
T ss_pred             ccCCCEEEEEECCCC--------c-EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC-CCE
Confidence            999999999999873        2 233345799999999999999999999999999999999999999999874 589


Q ss_pred             eeEEEEecC
Q 035621          320 SEMVIATGI  328 (387)
Q Consensus       320 ~~~~~~~~~  328 (387)
                      ++++|++..
T Consensus       293 ~~~~~s~~~  301 (317)
T d1vyhc1         293 TSLDFHKTA  301 (317)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEcCCC
Confidence            999887543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-37  Score=266.62  Aligned_cols=289  Identities=18%  Similarity=0.205  Sum_probs=230.1

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV   82 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~   82 (387)
                      ++++++++||+|+.||+|+|||+.+++.+.++.+|.++|++++|+|+..     +++++.|+.|++|+....+.......
T Consensus        18 c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~-----l~s~s~D~~i~iw~~~~~~~~~~~~~   92 (355)
T d1nexb2          18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-----LVSGSTDRTVRVWDIKKGCCTHVFEG   92 (355)
T ss_dssp             EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTE-----EEEEETTCCEEEEETTTTEEEEEECC
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCE-----EEEEeccccccccccccccccccccc
Confidence            5788899999999999999999999999999999999999999998643     44589999999999988876655543


Q ss_pred             C---CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc-----------------------cCCCCCeEEEEEcCC
Q 035621           83 P---EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF-----------------------SAHDKPVSCLKISPD  136 (387)
Q Consensus        83 ~---~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------------------~~~~~~v~~~~~~~~  136 (387)
                      .   .......+.+++.++++++.|+.|++||+++.......                       ..|...+.  .+.++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~  170 (355)
T d1nexb2          93 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGH  170 (355)
T ss_dssp             CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEE
T ss_pred             ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccc
Confidence            3   34566778889999999999999999999776433221                       12333333  34557


Q ss_pred             CCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE
Q 035621          137 GSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL  216 (387)
Q Consensus       137 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  216 (387)
                      +++++++..|+.|++||+            .....+.....+...+.++.+++.+  .++++++.|+.|++||++++..+
T Consensus       171 ~~~~~~~~~d~~i~~~d~------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~  236 (355)
T d1nexb2         171 GNIVVSGSYDNTLIVWDV------------AQMKCLYILSGHTDRIYSTIYDHER--KRCISASMDTTIRIWDLENGELM  236 (355)
T ss_dssp             TTEEEEEETTSCEEEEET------------TTTEEEEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEEETTTCCEE
T ss_pred             cceeeeecccceeeeeec------------ccccceeeeeccccccccccccccc--eeeecccccceEEeeeccccccc
Confidence            889999999999999999            5666777888888999999999875  89999999999999999999999


Q ss_pred             EEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEE-EEecCCCEEEEEeCC
Q 035621          217 STVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV-MMMNEGKNLVSAAED  294 (387)
Q Consensus       217 ~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~d  294 (387)
                      ..+. |...|.++++++  ++|++++.||.|++||++...        ..   ...|...+.++ .+++++++|++| .|
T Consensus       237 ~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--------~~---~~~~~~~~~~~~~~~~~~~~l~~g-~d  302 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS--------RK---FSYHHTNLSAITTFYVSDNILVSG-SE  302 (355)
T ss_dssp             EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCC--------EE---EEEECTTCCCCCEEEECSSEEEEE-ET
T ss_pred             ccccccccccccccccc--ceeeeeecccccccccccccc--------ee---cccccCCceEEEEEcCCCCEEEEE-eC
Confidence            8887 678899999874  699999999999999998632        11   12455556555 456777776665 58


Q ss_pred             CcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          295 GSVYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       295 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      |.|++||+++++++......+.++|++++|.+
T Consensus       303 ~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~  334 (355)
T d1nexb2         303 NQFNIYNLRSGKLVHANILKDADQIWSVNFKG  334 (355)
T ss_dssp             TEEEEEETTTCCBCCSCTTTTCSEEEEEEEET
T ss_pred             CEEEEEECCCCCEEEEEecCCCCCEEEEEEcC
Confidence            99999999999998754444466899888753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-37  Score=262.67  Aligned_cols=281  Identities=14%  Similarity=0.167  Sum_probs=211.9

Q ss_pred             ccccCCCcEEEeeCCCC-cEEEEeCCCC--ceeEeccCCC-CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621            2 LHHLPCNEVILTSSPEG-PITAYNPSSG--AILAHFSGSR-SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL   77 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg-~i~iwd~~~~--~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~   77 (387)
                      ++|+|+++.|+.++.+. .|+.|+....  .....+.+|. ..|++++|+|..  ...++++++.||+|++||+..++..
T Consensus        23 l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~--~g~~lasgs~Dg~i~iWd~~~~~~~  100 (325)
T d1pgua1          23 LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK--GSQYLCSGDESGKVIVWGWTFDKES  100 (325)
T ss_dssp             CEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSST--TCCEEEEEETTSEEEEEEEEEEGGG
T ss_pred             EEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCC--CCCEEEEEeCCCCEEEeeecCCcce
Confidence            67999999999886543 3566765433  4466777775 579999999832  1123445899999999999776554


Q ss_pred             cccC---------CCCCeeeEEeccCCCEEEEec--CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE-EEEEeC
Q 035621           78 HNIP---------VPEPVAPLATTADGSYLFTGG--LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL-LISGGD  145 (387)
Q Consensus        78 ~~~~---------~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~  145 (387)
                      ..+.         +..+|.+++|+++++++++++  .++.+.+|+..+++.+..+.+|...|++++|+|++.+ +++++.
T Consensus       101 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~  180 (325)
T d1pgua1         101 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD  180 (325)
T ss_dssp             TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEET
T ss_pred             eeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeec
Confidence            4332         567899999999999988775  4678999999999999999999999999999998774 778999


Q ss_pred             CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCc
Q 035621          146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCA  224 (387)
Q Consensus       146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~  224 (387)
                      |+.+++||+....         ..........|...|.+++|+|+. +.++++++.|+.|++||+++++.+..+. +...
T Consensus       181 d~~v~~~d~~~~~---------~~~~~~~~~~~~~~v~~v~~~pd~-~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~  250 (325)
T d1pgua1         181 DGSVVFYQGPPFK---------FSASDRTHHKQGSFVRDVEFSPDS-GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP  250 (325)
T ss_dssp             TTEEEEEETTTBE---------EEEEECSSSCTTCCEEEEEECSTT-CCEEEEEETTCCEEEEETTTCCEEEECCBTTBC
T ss_pred             ccccccccccccc---------cceecccccCCCCccEEeeecccc-ceeccccccccceeeeeeccccccccccccccc
Confidence            9999999983211         111222345677889999999975 5899999999999999999999998887 4445


Q ss_pred             eeEEEeC---CCCCeEEEEccCCcEEEEeccccccccccccceeEee-cccccccEEEEEEecC-CCEEEEEeCCCcEEE
Q 035621          225 IMGLALD---PTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTL-ANRHDGVVVSVMMMNE-GKNLVSAAEDGSVYI  299 (387)
Q Consensus       225 v~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~i  299 (387)
                      +..+.|+   |++++|++++.|+.|++||++++.        .+..+ ...|...+..+++.+. +.+|++++.||.|++
T Consensus       251 v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~v  322 (325)
T d1pgua1         251 VQGGIFALSWLDSQKFATVGADATIRVWDVTTSK--------CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF  322 (325)
T ss_dssp             CCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE--------EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred             cccceeeeeccCCCEEEEEeCCCeEEEEECCCCC--------EEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEE
Confidence            5444444   688999999999999999998733        22222 1233333444444332 348899999999999


Q ss_pred             EEC
Q 035621          300 WEI  302 (387)
Q Consensus       300 wd~  302 (387)
                      ||+
T Consensus       323 wdl  325 (325)
T d1pgua1         323 YEL  325 (325)
T ss_dssp             EET
T ss_pred             EEC
Confidence            996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-36  Score=256.08  Aligned_cols=272  Identities=17%  Similarity=0.228  Sum_probs=216.1

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV   82 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~   82 (387)
                      +++++|++||+|+.||+|+|||+.+++++.++.+|..+|.+++|+|+      .+++++.|+.+++|+............
T Consensus        22 ~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~------~l~s~s~D~~~~~~~~~~~~~~~~~~~   95 (342)
T d2ovrb2          22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN------IIISGSTDRTLKVWNAETGECIHTLYG   95 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT------EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC------ccccceecccccccccccccceecccc
Confidence            57889999999999999999999999999999999999999999985      344578999999999865433222111


Q ss_pred             C-C--------------------------------------CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccC
Q 035621           83 P-E--------------------------------------PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSA  123 (387)
Q Consensus        83 ~-~--------------------------------------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  123 (387)
                      . .                                      ........+....+++++.++.+++||....+.+..+.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~  175 (342)
T d2ovrb2          96 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG  175 (342)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECC
T ss_pred             cceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcC
Confidence            0 0                                      011122334556788899999999999999999999988


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC
Q 035621          124 HDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC  203 (387)
Q Consensus       124 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~  203 (387)
                      |...+..+.+  ++.++++++.||.|++||+            .....+..+..|...+.++.+++    ++|++++.|+
T Consensus       176 ~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~------------~~~~~~~~~~~~~~~v~~~~~~~----~~l~s~s~d~  237 (342)
T d2ovrb2         176 HTNRVYSLQF--DGIHVVSGSLDTSIRVWDV------------ETGNCIHTLTGHQSLTSGMELKD----NILVSGNADS  237 (342)
T ss_dssp             CSSCEEEEEE--CSSEEEEEETTSCEEEEET------------TTCCEEEEECCCCSCEEEEEEET----TEEEEEETTS
T ss_pred             cccccccccC--CCCEEEEEeCCCeEEEeec------------ccceeeeEecccccceeEEecCC----CEEEEEcCCC
Confidence            8877766655  6789999999999999999            56677888999999998887653    6899999999


Q ss_pred             cEEEEeCCCCcEEEEEe----cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEE
Q 035621          204 TCKFWRLLNGTHLSTVT----FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSV  279 (387)
Q Consensus       204 ~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  279 (387)
                      .|++||+...+....+.    +...+.++.++  ++++++++.||.|++||++++......    ......+|...|+++
T Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~----~~~~~~~~~~~v~~v  311 (342)
T d2ovrb2         238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL----VTLESGGSGGVVWRI  311 (342)
T ss_dssp             CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE----EECTTGGGTCEEEEE
T ss_pred             EEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEE----ecccCCCCCCCEEEE
Confidence            99999999998888776    33456666665  579999999999999999875332111    011124688899999


Q ss_pred             EEecCCCEEEEEeCCCc----EEEEECCC
Q 035621          280 MMMNEGKNLVSAAEDGS----VYIWEIEK  304 (387)
Q Consensus       280 ~~s~~~~~l~s~~~dg~----i~iwd~~~  304 (387)
                      +|+|++.+|++|+.||+    |++||++.
T Consensus       312 ~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         312 RASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            99999999999999986    99999864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.2e-35  Score=247.96  Aligned_cols=267  Identities=13%  Similarity=0.155  Sum_probs=208.2

Q ss_pred             CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--CCCCeeeEEeccCCCEEEEecCCC
Q 035621           28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPVAPLATTADGSYLFTGGLSG  105 (387)
Q Consensus        28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg  105 (387)
                      |+..+.++||.++|++++|+|++.+    +++++.||.|++||++++++...+.  |...|.+++|+|++.++ +++.|+
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~----l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~   76 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKT----LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDD   76 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSE----EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTT
T ss_pred             CccceEcCCCCCCcEEEEECCCCCE----EEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-ccccee
Confidence            5678899999999999999997654    4459999999999999998887775  66789999999999755 556789


Q ss_pred             cEEEEeCCCCce---eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621          106 NVYAISVPKGDI---LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV  182 (387)
Q Consensus       106 ~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  182 (387)
                      .+++|+......   ......+...+.+++|+|+++++++++ ++.+++|+..+              ...  ......+
T Consensus        77 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--------------~~~--~~~~~~~  139 (299)
T d1nr0a2          77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--------------LTE--VPISYNS  139 (299)
T ss_dssp             EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--------------EEE--EECSSCE
T ss_pred             eEEEeccCCccccccccccccccccccccccccccccccccc-ccccccccccc--------------ccc--ccccccc
Confidence            999999865432   112235677899999999998776665 56899998622              111  1234567


Q ss_pred             EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE--EEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccc
Q 035621          183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS--TVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMH  260 (387)
Q Consensus       183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  260 (387)
                      .+++++|++  +++++++.|+.|++||+++++...  ...+...|.+++|+|++++|++++.|+.|++||+........ 
T Consensus       140 ~~~~~s~~~--~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-  216 (299)
T d1nr0a2         140 SCVALSNDK--QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH-  216 (299)
T ss_dssp             EEEEECTTS--CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC-
T ss_pred             ccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            889998874  899999999999999998876543  345788999999999999999999999999999987432211 


Q ss_pred             ccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEE--EeecccCCCceeEEE
Q 035621          261 KGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVM--VLKNELAGSISEMVI  324 (387)
Q Consensus       261 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~  324 (387)
                           ......|...|++++|+|++++|++|+.||.|++||+++++...  ....+....++.+++
T Consensus       217 -----~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  277 (299)
T d1nr0a2         217 -----TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW  277 (299)
T ss_dssp             -----CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE
T ss_pred             -----cccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE
Confidence                 12234689999999999999999999999999999998875433  333344445655544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.5e-35  Score=250.13  Aligned_cols=273  Identities=16%  Similarity=0.260  Sum_probs=228.2

Q ss_pred             CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCc
Q 035621           28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGN  106 (387)
Q Consensus        28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~  106 (387)
                      .+..++|++|.++|++++|+|+..+    +++|+.||.|++||+.+++.+..+. |..+|.+++|+|+++++++|+.|+.
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~----l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~  120 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRL----LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSE----EEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCE----EEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccce
Confidence            3567789999999999999996544    4559999999999999998888776 6788999999999999999999999


Q ss_pred             EEEEeCCCC----ceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621          107 VYAISVPKG----DILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV  182 (387)
Q Consensus       107 i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  182 (387)
                      +.+|+....    .....+.+|.......... .+..+.....|.....+..            ...........+...+
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~  187 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDI------------ETGQQTTTFTGHTGDV  187 (340)
T ss_dssp             EEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEET------------TTTEEEEEEECCSSCE
T ss_pred             eecccccccccccccceecccccccccccccc-ccccccccccccccccccc------------ccccccccccccceeE
Confidence            999997654    3455666777766665554 4557888888899888887            4445556666777888


Q ss_pred             EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccc
Q 035621          183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHK  261 (387)
Q Consensus       183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  261 (387)
                      ....+.+..  .++++++.|+.|++||+++++++..+. |...|.+++|+|++++|++++.||.|++|++.......   
T Consensus       188 ~~~~~~~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~---  262 (340)
T d1tbga_         188 MSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM---  262 (340)
T ss_dssp             EEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---
T ss_pred             eeecccccc--ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccc---
Confidence            888887764  899999999999999999999999887 67899999999999999999999999999998733211   


Q ss_pred             cceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          262 GQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       262 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                          ......+...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|. +.|++++|++.
T Consensus       263 ----~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~-~~V~~l~~s~d  323 (340)
T d1tbga_         263 ----TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD-NRVSCLGVTDD  323 (340)
T ss_dssp             ----EECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTT
T ss_pred             ----ccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC-CCEEEEEEeCC
Confidence                11123567789999999999999999999999999999999999999875 58999988753

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-35  Score=247.78  Aligned_cols=271  Identities=13%  Similarity=0.191  Sum_probs=221.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      .++++||++||+|+.||+|+|||+.+++++.++++|..+|.+++|+++      .+++++.|+.|++|++..+.......
T Consensus        19 ~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~------~l~s~s~D~~i~~~~~~~~~~~~~~~   92 (293)
T d1p22a2          19 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER------VIITGSSDSTVRVWDVNTGEMLNTLI   92 (293)
T ss_dssp             EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSS------EEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred             EEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccc------eeeccccccccccccccccccccccc
Confidence            468899999999999999999999999999999999999999998763      34558899999999999887766665


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce---eEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccc
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI---LRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLV  158 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  158 (387)
                      ...... ..+.+....++++..++.+.+|+......   ...+..|...+..+.+.+  ..+++++.|+.|++||+    
T Consensus        93 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~----  165 (293)
T d1p22a2          93 HHCEAV-LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNT----  165 (293)
T ss_dssp             CCCSCE-EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEET----
T ss_pred             cccccc-ccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecC----
Confidence            444333 34455667888999999999999977653   344567888888888754  57889999999999999    


Q ss_pred             ccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec-CCceeEEEeCCCCCeE
Q 035621          159 DEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF-PCAIMGLALDPTETDF  237 (387)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l  237 (387)
                              .....+..+.++...+..+.+.    +..+++++.|+.|++||+++.+.+..+.. ...+.  .+++++.+|
T Consensus       166 --------~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l  231 (293)
T d1p22a2         166 --------STCEFVRTLNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRI  231 (293)
T ss_dssp             --------TTCCEEEEEECCSSCEEEEEEE----TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--EEECCSSEE
T ss_pred             --------CCCcEEEEEcccccccccccCC----CCeEEEecCCCEEEEEecccceeeeeecccceeee--eccccceEE
Confidence                    5667788888999888887764    26899999999999999999999888774 34444  456678899


Q ss_pred             EEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          238 FAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       238 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      ++++.||.|++||+.................+.+|.+.|++++|+  +++|++|+.||+|++||
T Consensus       232 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            999999999999998765544444445555567899999999984  57899999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.3e-35  Score=254.79  Aligned_cols=232  Identities=13%  Similarity=0.075  Sum_probs=193.7

Q ss_pred             CCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCc--eeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           83 PEPVAPLATTADGSYLFTGGLSGNVYAISVPKGD--ILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        83 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                      .++|+|++|+|+|++||+|+.||.|++||+.+++  .+..+++|.++|++++|+|++++|++++.|+.|++||+..    
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~----   82 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG----   82 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET----
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc----
Confidence            4789999999999999999999999999998775  5677889999999999999999999999999999999832    


Q ss_pred             CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-----cCCceeEEEeCCCCC
Q 035621          161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-----FPCAIMGLALDPTET  235 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~  235 (387)
                            ........+..|...|.+++|+|++  +.|++++.|+++++|++..........     +...|.+++|+|+++
T Consensus        83 ------~~~~~~~~~~~~~~~v~~i~~~p~~--~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  154 (371)
T d1k8kc_          83 ------RTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV  154 (371)
T ss_dssp             ------TEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred             ------ccccccccccccccccccccccccc--ccceeecccCcceeeeeeccccccccccccccccccccccccccccc
Confidence                  1233455567889999999999885  899999999999999987765433322     567899999999999


Q ss_pred             eEEEEccCCcEEEEecccccccccc---------ccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621          236 DFFAAGSDGLIYKGLLKYQSRQQMH---------KGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       236 ~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  306 (387)
                      +|++|+.|+.|++|+..........         ...........|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus       155 ~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~  234 (371)
T d1k8kc_         155 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM  234 (371)
T ss_dssp             EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred             ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeeccc
Confidence            9999999999999998764322111         1122334445789999999999999999999999999999999999


Q ss_pred             EEEEeecccCCCceeEEEEec
Q 035621          307 VVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       307 ~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      .+..+..|. .+|.+++|++.
T Consensus       235 ~~~~~~~~~-~~v~s~~fs~d  254 (371)
T d1k8kc_         235 AVATLASET-LPLLAVTFITE  254 (371)
T ss_dssp             EEEEEECSS-CCEEEEEEEET
T ss_pred             ceeeeeccc-ccceeeeecCC
Confidence            999998774 48888887653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-32  Score=234.57  Aligned_cols=270  Identities=11%  Similarity=0.132  Sum_probs=205.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCC--ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSP--RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN   79 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~   79 (387)
                      ++|+|+ .+|++|+.||.|++|+....+.......+...  .....+.++.    ..+++++.|+.|++||+.+......
T Consensus        59 l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~~i~iw~~~~~~~~~~  133 (355)
T d1nexb2          59 LKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI----KYIVTGSRDNTLHVWKLPKESSVPD  133 (355)
T ss_dssp             EEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTE----EEEEEEETTSEEEEEECCC------
T ss_pred             EEEcCC-CEEEEEeccccccccccccccccccccccccccccccccccccc----ceeeeecCCCcEEEEEccCCceecc
Confidence            578885 58999999999999999988877666544443  3445555643    3444588999999999987654432


Q ss_pred             cCCC----------------------CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCC
Q 035621           80 IPVP----------------------EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDG  137 (387)
Q Consensus        80 ~~~~----------------------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  137 (387)
                      ....                      .......+.+++++++++..|+.|++||+++++.+....++...+.++.|+|++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (355)
T d1nexb2         134 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER  213 (355)
T ss_dssp             -----CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred             ccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccc
Confidence            2210                      011223456678999999999999999999999999999899999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEE
Q 035621          138 SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLS  217 (387)
Q Consensus       138 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  217 (387)
                      .++++++.|+.|++||+            .....+..+.+|...|.++++++    ++|++++.||.|++||+++.....
T Consensus       214 ~~~~~~~~d~~i~i~d~------------~~~~~~~~~~~h~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~  277 (355)
T d1nexb2         214 KRCISASMDTTIRIWDL------------ENGELMYTLQGHTALVGLLRLSD----KFLVSAAADGSIRGWDANDYSRKF  277 (355)
T ss_dssp             TEEEEEETTSCEEEEET------------TTCCEEEEECCCSSCCCEEEECS----SEEEEECTTSEEEEEETTTCCEEE
T ss_pred             eeeecccccceEEeeec------------ccccccccccccccccccccccc----ceeeeeecccccccccccccceec
Confidence            99999999999999999            56778888999999999998753    689999999999999999887766


Q ss_pred             EEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcE
Q 035621          218 TVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSV  297 (387)
Q Consensus       218 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  297 (387)
                      ...+........+++++.++++ +.||.|++||++++.        .+.....+|..+|++++|+|+ .++++++.||.+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~l~~-g~d~~i~vwd~~tg~--------~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~  347 (355)
T d1nexb2         278 SYHHTNLSAITTFYVSDNILVS-GSENQFNIYNLRSGK--------LVHANILKDADQIWSVNFKGK-TLVAAVEKDGQS  347 (355)
T ss_dssp             EEECTTCCCCCEEEECSSEEEE-EETTEEEEEETTTCC--------BCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCE
T ss_pred             ccccCCceEEEEEcCCCCEEEE-EeCCEEEEEECCCCC--------EEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcE
Confidence            5544433333455666665555 568999999998743        333344579999999999987 578889999987


Q ss_pred             EEEEC
Q 035621          298 YIWEI  302 (387)
Q Consensus       298 ~iwd~  302 (387)
                      +||.+
T Consensus       348 ~l~~~  352 (355)
T d1nexb2         348 FLEIL  352 (355)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-33  Score=243.28  Aligned_cols=286  Identities=13%  Similarity=0.128  Sum_probs=199.3

Q ss_pred             EeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc-------CCCCCeeeEEe------cc-CCCE
Q 035621           32 AHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI-------PVPEPVAPLAT------TA-DGSY   97 (387)
Q Consensus        32 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~-------~~~~~v~~~~~------~~-~~~~   97 (387)
                      ...++|...|.+++++++      ++++++.|++|++||..+.+.....       .+...+..+..      .. ++.+
T Consensus         8 ~~~~~H~~~I~~v~~~~~------~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACNS------FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   81 (393)
T ss_dssp             EESSCSSSCEEEEEECSS------EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             ecCCcccCccEEEEEeCC------EEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcE
Confidence            445799999999999874      3445789999999998765432111       12222222221      11 2356


Q ss_pred             EEEecCCCcEEEEeCCCCceeEE-----c-----cCCCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEeCCcccccCC
Q 035621           98 LFTGGLSGNVYAISVPKGDILRS-----F-----SAHDKPVSCLKISPD-----GSLLISGGDDGVIATVPIFQLVDEHT  162 (387)
Q Consensus        98 l~~~~~dg~i~i~d~~~~~~~~~-----~-----~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~  162 (387)
                      +++++.||.|++|++........     .     ..+...+..++|.++     +.++++++.||.+++|++........
T Consensus        82 ~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~  161 (393)
T d1sq9a_          82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  161 (393)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence            78899999999999754422111     1     123456778888765     45889999999999999843211100


Q ss_pred             CCC---CCC---ccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-------cCCceeEEE
Q 035621          163 DDK---NPD---DLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-------FPCAIMGLA  229 (387)
Q Consensus       163 ~~~---~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~v~~~~  229 (387)
                      ...   ...   .........+...+.+++|+|+   .+|++|+.|++|++||+.+++++..+.       |..+|.+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d---g~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISER---GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  238 (393)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT---SEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             eeeeeeccceecccceecccCCCCcEEEEEECCC---CEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence            000   000   0111122344566889999887   489999999999999999999887765       567899999


Q ss_pred             eCCCCCeEEEEccCCc---EEEEeccccccccccc----cceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621          230 LDPTETDFFAAGSDGL---IYKGLLKYQSRQQMHK----GQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       230 ~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  302 (387)
                      |+|++++|++|+.|+.   |++||+.++.......    .........+|.+.|++++|+|++++|++|+.|++|++||+
T Consensus       239 ~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             cccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence            9999999999999874   8999998764432211    12223334589999999999999999999999999999999


Q ss_pred             CCccEEEEeecccCCCce----eEEEEec
Q 035621          303 EKRQVVMVLKNELAGSIS----EMVIATG  327 (387)
Q Consensus       303 ~~~~~~~~~~~~~~~~v~----~~~~~~~  327 (387)
                      ++++++.++++|.. .|.    .++|.+.
T Consensus       319 ~~g~~~~~l~gH~~-~v~~~~~~~~~~~~  346 (393)
T d1sq9a_         319 KTKERITTLNMHCD-DIEIEEDILAVDEH  346 (393)
T ss_dssp             TTTEEEEEEECCGG-GCSSGGGCCCBCTT
T ss_pred             CCCCEEEEECCcCC-cccCCccEEEECCC
Confidence            99999999998854 443    3455543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.3e-32  Score=230.24  Aligned_cols=252  Identities=14%  Similarity=0.123  Sum_probs=194.9

Q ss_pred             CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCc--ccccC-C-CCCeeeEEecc--CCCEEEEecCCCcEEEEeCC
Q 035621           40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTP--LHNIP-V-PEPVAPLATTA--DGSYLFTGGLSGNVYAISVP  113 (387)
Q Consensus        40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~--~~~~~-~-~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~  113 (387)
                      .+++++|+|++...+.   ..+....++.|+......  ...+. | ...|++++|+|  ++.+|++|+.||+|++||+.
T Consensus        19 ~~t~l~~~~~~~~la~---~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~   95 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAY---PCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT   95 (325)
T ss_dssp             CCCCCEEETTTTEEEE---EETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEE---EeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeec
Confidence            4678999996554432   123333466676544332  33333 4 36799999998  56899999999999999986


Q ss_pred             CCcee--------EEccCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeE
Q 035621          114 KGDIL--------RSFSAHDKPVSCLKISPDGSLLISGGD--DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVT  183 (387)
Q Consensus       114 ~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  183 (387)
                      .++..        ..+..|.++|.+++|+++++++++++.  ++.+++|+.            .....+..+.+|...|.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~~h~~~v~  163 (325)
T d1pgua1          96 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISW------------DSGNSLGEVSGHSQRIN  163 (325)
T ss_dssp             EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEET------------TTCCEEEECCSCSSCEE
T ss_pred             CCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEee------------cccccceeeeecccccc
Confidence            55432        234568899999999999999887764  678999988            45667888899999999


Q ss_pred             EEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceeEEEeCCC-CCeEEEEccCCcEEEEecccccccc
Q 035621          184 AITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIMGLALDPT-ETDFFAAGSDGLIYKGLLKYQSRQQ  258 (387)
Q Consensus       184 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~  258 (387)
                      +++|+|+. ..++++++.|+.+++||+...+....+.    +...|.+++|+|+ +.++++++.|+.|++||+++..   
T Consensus       164 ~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~---  239 (325)
T d1pgua1         164 ACHLKQSR-PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE---  239 (325)
T ss_dssp             EEEECSSS-SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC---
T ss_pred             cccccccc-cceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc---
Confidence            99999885 3568899999999999999888776664    4567999999997 5788999999999999988732   


Q ss_pred             ccccceeEeecccccccEEEEEEe---cCCCEEEEEeCCCcEEEEECCCccEEEEeecccC
Q 035621          259 MHKGQELVTLANRHDGVVVSVMMM---NEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA  316 (387)
Q Consensus       259 ~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  316 (387)
                            ....+.+|..++..+.|+   |++++|++++.|+.|+|||+++++++..+..+..
T Consensus       240 ------~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~  294 (325)
T d1pgua1         240 ------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ  294 (325)
T ss_dssp             ------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT
T ss_pred             ------ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCC
Confidence                  233344677766655555   6899999999999999999999999998876643

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-32  Score=229.95  Aligned_cols=254  Identities=15%  Similarity=0.158  Sum_probs=199.9

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      |+|+|    |++|+.||+|++||+.++.     .+|...|.++.++++..+     ++++.|+++++|++...+      
T Consensus        19 l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~~~-----~s~s~D~~v~~w~~~~~~------   78 (287)
T d1pgua2          19 LTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEY-----SSISWDDTLKVNGITKHE------   78 (287)
T ss_dssp             EETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTTCC-----EEEETTTEEEETTEEEEE------
T ss_pred             EEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCCeE-----EEEeeccccccccccccc------
Confidence            46776    8999999999999987543     579999999999985443     447899999999975432      


Q ss_pred             CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEeCCccccc
Q 035621           82 VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG-VIATVPIFQLVDE  160 (387)
Q Consensus        82 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~  160 (387)
                      ....+.++++++++..++++. ++.+.+|+..+++.+..+..+ ..+  .++++++..+++++.++ .+++|++..    
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~----  150 (287)
T d1pgua2          79 FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTIQVFKLSD----  150 (287)
T ss_dssp             CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETTTSCEEEEETTE----
T ss_pred             cccceeeeeeccCCceEEEee-cccceeeeccceeeeeecccc-cee--eeeeccCcceeeeccccceeeeeeccc----
Confidence            345677889999887777664 566889999999888877643 333  45666778888887765 799999832    


Q ss_pred             CCCCCCCCccceEe-eeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE-e-cCCceeEEEeCCC----
Q 035621          161 HTDDKNPDDLMLQK-FVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV-T-FPCAIMGLALDPT----  233 (387)
Q Consensus       161 ~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~----  233 (387)
                              ...... ...|..++++++|+|++  .+|++|+.||.|++||+.+++..... . |...|.+++|+|.    
T Consensus       151 --------~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         151 --------LEVSFDLKTPLRAKPSYISISPSE--TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             --------EEEEEECSSCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             --------cceeeeeeeccCCceeEEEeccCc--cccccccccccccceeecccccccccccccccccceeeeccccccc
Confidence                    222222 33577889999999885  89999999999999999998876543 2 6788999999875    


Q ss_pred             ------CCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 035621          234 ------ETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       234 ------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  302 (387)
                            +.++++|+.|+.|++||++.        .........+|...|++++|+|++ .|++++.||.|++|++
T Consensus       221 ~~~~~~~~~l~sgs~D~~i~iw~~~~--------~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         221 NEEEIEEDLVATGSLDTNIFIYSVKR--------PMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSC--------TTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             ccccCCCCeeEeecCCCeEEEEECCC--------CCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence                  46899999999999999876        234445566899999999999986 6889999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-31  Score=228.18  Aligned_cols=270  Identities=15%  Similarity=0.290  Sum_probs=201.5

Q ss_pred             EeCCCCceeEeccCCCCCcee-EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEE
Q 035621           23 YNPSSGAILAHFSGSRSPRRG-LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFT  100 (387)
Q Consensus        23 wd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~  100 (387)
                      |+..+.+....+++|.+.|.+ +.+++      .+++||+.||+|++||+.+++++..+. |...|.+++|+|+  +|++
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s~~~~~g------~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s   72 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVITCLQFCG------NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIIS   72 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEEEEEEET------TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEE
T ss_pred             CCCCCCCcCEEECCcCCceEEEEEECC------CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--cccc
Confidence            566667788889999999854 44443      345568999999999999999988887 6789999999874  8999


Q ss_pred             ecCCCcEEEEeCCCCceeEEccCCCCCeEEEE--------------------------------------EcCCCCEEEE
Q 035621          101 GGLSGNVYAISVPKGDILRSFSAHDKPVSCLK--------------------------------------ISPDGSLLIS  142 (387)
Q Consensus       101 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~--------------------------------------~~~~~~~l~~  142 (387)
                      |+.|+.+++|+............+...+....                                      ..+....+++
T Consensus        73 ~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T d2ovrb2          73 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS  152 (342)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEE
T ss_pred             ceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeee
Confidence            99999999999876654443333322222221                                      2223445667


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 035621          143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-F  221 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~  221 (387)
                      ++.|+.|++||.            .....+..+.+|...+....+  +  +.++++++.||.|++||++.++++..+. +
T Consensus       153 ~~~d~~i~~~d~------------~~~~~~~~~~~~~~~~~~~~~--~--~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~  216 (342)
T d2ovrb2         153 GAYDFMVKVWDP------------ETETCLHTLQGHTNRVYSLQF--D--GIHVVSGSLDTSIRVWDVETGNCIHTLTGH  216 (342)
T ss_dssp             EETTSCEEEEEG------------GGTEEEEEECCCSSCEEEEEE--C--SSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             ecCCCeEEEeec------------ccceeeEEEcCcccccccccC--C--CCEEEEEeCCCeEEEeecccceeeeEeccc
Confidence            777777777777            445566777778777666544  4  4799999999999999999999988887 5


Q ss_pred             CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 035621          222 PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWE  301 (387)
Q Consensus       222 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  301 (387)
                      ...+.+++++  +++|++++.|+.|++||+.......      .......|...+.++.++  ++++++|+.||.|++||
T Consensus       217 ~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd  286 (342)
T d2ovrb2         217 QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQ------TLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  286 (342)
T ss_dssp             CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE------EECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             ccceeEEecC--CCEEEEEcCCCEEEEEecccccccc------cccccceeeeceeecccC--CCeeEEEcCCCEEEEEE
Confidence            6677777765  4699999999999999998743221      111223566777777765  56999999999999999


Q ss_pred             CCCccEEEEeec----ccCCCceeEEEEe
Q 035621          302 IEKRQVVMVLKN----ELAGSISEMVIAT  326 (387)
Q Consensus       302 ~~~~~~~~~~~~----~~~~~v~~~~~~~  326 (387)
                      ++++++++.+..    .+.+.|+++.|++
T Consensus       287 ~~tg~~i~~~~~~~~~~~~~~v~~v~~s~  315 (342)
T d2ovrb2         287 LKTGEFIRNLVTLESGGSGGVVWRIRASN  315 (342)
T ss_dssp             TTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             CCCCCEEEEEecccCCCCCCCEEEEEECC
Confidence            999999988853    2345788888765

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=3.8e-32  Score=234.84  Aligned_cols=278  Identities=12%  Similarity=0.076  Sum_probs=214.2

Q ss_pred             cccC-CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCC-CeEEEEEccCCCccccc
Q 035621            3 HHLP-CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS-GSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         3 ~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d-~~v~vw~~~~~~~~~~~   80 (387)
                      .||| ||+++|+++. |.|++||+.++..++.  +|...|.+++|+|++..++.   ++..+ ..|++||+++++.....
T Consensus         9 ~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~---~~~~~g~~v~v~d~~~~~~~~~~   82 (360)
T d1k32a3           9 DFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFI---HGTREGDFLGIYDYRTGKAEKFE   82 (360)
T ss_dssp             EEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEE---EEETTEEEEEEEETTTCCEEECC
T ss_pred             cccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEE---EEcCCCCEEEEEECCCCcEEEee
Confidence            5999 9999999875 7999999988877653  58999999999997654432   12233 47999999999888888


Q ss_pred             CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe----------CCCcEE
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG----------DDGVIA  150 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~  150 (387)
                      .+...+.+++|+|++++|++++.++.+++|++.+++....+..|...+.+++|+|+|++|+.+.          .++.++
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~  162 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH  162 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence            8899999999999999999999999999999999999999989999999999999999998654          345689


Q ss_pred             EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE-------EEEEe-cC
Q 035621          151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH-------LSTVT-FP  222 (387)
Q Consensus       151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~~-~~  222 (387)
                      +||+            ... .......+...+..++|+|++  +.|++++.++.+++||......       ...+. +.
T Consensus       163 v~d~------------~~~-~~~~~~~~~~~~~~~~~spdg--~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  227 (360)
T d1k32a3         163 VYDM------------EGR-KIFAATTENSHDYAPAFDADS--KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP  227 (360)
T ss_dssp             EEET------------TTT-EEEECSCSSSBEEEEEECTTS--CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST
T ss_pred             eecc------------ccC-ceeeecccccccccccccCCC--CEEEEEeCCCceEcccccccceeeccccceEEEeccc
Confidence            9998            222 334455677788889999885  8999999999999998754321       11111 00


Q ss_pred             ------------------------------------CceeEEEeCCCC-------------CeEEEEccCCcEEEEeccc
Q 035621          223 ------------------------------------CAIMGLALDPTE-------------TDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       223 ------------------------------------~~v~~~~~~~~~-------------~~l~~~~~dg~i~i~d~~~  253 (387)
                                                          .....+...+++             .+++.++.++.+++||+..
T Consensus       228 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  307 (360)
T d1k32a3         228 GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT  307 (360)
T ss_dssp             TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT
T ss_pred             CccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCC
Confidence                                                011222222222             1234445577888998876


Q ss_pred             cccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          254 QSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      ..         .    ..|.+.|.+++|+|||++|++++.||.|++||+++++...++..+
T Consensus       308 ~~---------~----~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d  355 (360)
T d1k32a3         308 RK---------V----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD  355 (360)
T ss_dssp             CC---------E----EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCC
T ss_pred             Ce---------E----EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEec
Confidence            21         1    135567999999999999999999999999999999988877654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-31  Score=233.17  Aligned_cols=272  Identities=14%  Similarity=0.160  Sum_probs=188.8

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCce------eEeccCCCCCceeEEEc---CccceeeeccccCCCCCeEEEEEccC
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAI------LAHFSGSRSPRRGLTFA---GKPFIAASHISPTTGSGSVHLYNLWS   73 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~d~~v~vw~~~~   73 (387)
                      ++...+++|++++.|++|+|||..+...      ......|...+..+...   +........+++++.||.+++|++..
T Consensus        19 ~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~   98 (393)
T d1sq9a_          19 SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR   98 (393)
T ss_dssp             EEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE
T ss_pred             EEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccC
Confidence            3445568999999999999999765432      22223344443333322   11112334556788999999999865


Q ss_pred             CCcccccC-----------CCCCeeeEEeccC-----CCEEEEecCCCcEEEEeCCCCc------------------eeE
Q 035621           74 STPLHNIP-----------VPEPVAPLATTAD-----GSYLFTGGLSGNVYAISVPKGD------------------ILR  119 (387)
Q Consensus        74 ~~~~~~~~-----------~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~------------------~~~  119 (387)
                      ........           ++..+..++|.++     +.++++++.||.+++|++....                  ...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (393)
T d1sq9a_          99 EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE  178 (393)
T ss_dssp             CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEEC
T ss_pred             CCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceeccccee
Confidence            54322211           2345667777765     4678999999999999974321                  011


Q ss_pred             EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEE
Q 035621          120 SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISC  199 (387)
Q Consensus       120 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~  199 (387)
                      ....+...+.+++|+|++ +|++|+.||+|++||+......      ........+.+|..+|.+++|+|++  ++|++|
T Consensus       179 ~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~------~~~~~~~~l~~h~~~V~~l~~spdg--~~l~sg  249 (393)
T d1sq9a_         179 SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPL------YNFESQHSMINNSNSIRSVKFSPQG--SLLAIA  249 (393)
T ss_dssp             CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEE------EEEECCC---CCCCCEEEEEECSST--TEEEEE
T ss_pred             cccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccc------cccccccccccccceEEEccccccc--ceeeee
Confidence            122455678999999987 8999999999999999431110      0111223456799999999999985  999999


Q ss_pred             eCCCc---EEEEeCCCCcEEEEEe--------------cCCceeEEEeCCCCCeEEEEccCCcEEEEecccccccccccc
Q 035621          200 SMDCT---CKFWRLLNGTHLSTVT--------------FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKG  262 (387)
Q Consensus       200 ~~d~~---i~iwd~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  262 (387)
                      +.|++   |++||+.+++.+..+.              |...|++++|+|++++|++++.|+.|++||+.++.       
T Consensus       250 s~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~-------  322 (393)
T d1sq9a_         250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE-------  322 (393)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------
T ss_pred             cCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC-------
Confidence            99874   8999999999888773              56789999999999999999999999999998842       


Q ss_pred             ceeEeecccccccEE----EEEEecCCCEEEEEe
Q 035621          263 QELVTLANRHDGVVV----SVMMMNEGKNLVSAA  292 (387)
Q Consensus       263 ~~~~~~~~~~~~~v~----~~~~s~~~~~l~s~~  292 (387)
                        ....+.+|...|.    .++|+|++..+++++
T Consensus       323 --~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         323 --RITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             --EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             --EEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence              2333456776654    366777776665443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-32  Score=232.02  Aligned_cols=279  Identities=14%  Similarity=0.097  Sum_probs=203.9

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeE---eccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILA---HFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      |+|+|++++||+|+.||+|+|||+.++....   ...+|..+|.+++|+|+.   ...+++++.|+.|++|++.......
T Consensus        17 l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~---~~~l~sg~~d~~v~~w~~~~~~~~~   93 (342)
T d1yfqa_          17 IKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT---DLQIYVGTVQGEILKVDLIGSPSFQ   93 (342)
T ss_dssp             EEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS---SEEEEEEETTSCEEEECSSSSSSEE
T ss_pred             EEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCC---CCEEEEcccccceeeeecccccccc
Confidence            6899999999999999999999987654332   233699999999999742   2234558999999999998877666


Q ss_pred             ccCCC--CCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee----EEccCC--CCCeEEEEEcCCCCEEEEEeCCCcEE
Q 035621           79 NIPVP--EPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL----RSFSAH--DKPVSCLKISPDGSLLISGGDDGVIA  150 (387)
Q Consensus        79 ~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~  150 (387)
                      .....  .......+.++...+++++.++.+++||++.+...    .....+  ......+.+.+++..+++++.|+.|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  173 (342)
T d1yfqa_          94 ALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQ  173 (342)
T ss_dssp             ECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEE
T ss_pred             cccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEE
Confidence            55532  34455666778889999999999999998654322    222222  23445667778889999999999999


Q ss_pred             EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE------EEE-----
Q 035621          151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL------STV-----  219 (387)
Q Consensus       151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------~~~-----  219 (387)
                      +||+...         ...........+...+.+..+.+.. +..+++++.||.+.+|++......      ..+     
T Consensus       174 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~  243 (342)
T d1yfqa_         174 WFRLPLC---------EDDNGTIEESGLKYQIRDVALLPKE-QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL  243 (342)
T ss_dssp             EEESSCC---------TTCCCEEEECSCSSCEEEEEECSGG-GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred             EEecccC---------cccceeeeecccccceeeeEeecCC-CCEEEeecCCCeEEEEEecCCcceeeccccceeeeeee
Confidence            9998432         1112223334455566666666553 578999999999999998643211      111     


Q ss_pred             -----ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC
Q 035621          220 -----TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED  294 (387)
Q Consensus       220 -----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  294 (387)
                           .+...+++++|+|++++|++|+.||.|++||+.+.        ..+..+...|  .+..++|+|++++|++++.|
T Consensus       244 ~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~--------~~l~~~~~~~--~~~~~~~s~~~~~l~~a~sd  313 (342)
T d1yfqa_         244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--------KKIKNFAKFN--EDSVVKIACSDNILCLATSD  313 (342)
T ss_dssp             CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT--------EEEEECCCCS--SSEEEEEEECSSEEEEEEEC
T ss_pred             ccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC--------cEEEEecCCC--CCEEEEEEeCCCEEEEEEcC
Confidence                 13346899999999999999999999999999873        3333333233  44567788899999999999


Q ss_pred             CcEEEEECC
Q 035621          295 GSVYIWEIE  303 (387)
Q Consensus       295 g~i~iwd~~  303 (387)
                      +++++|...
T Consensus       314 d~~~~~~~~  322 (342)
T d1yfqa_         314 DTFKTNAAI  322 (342)
T ss_dssp             THHHHCSSS
T ss_pred             CcEEEeeee
Confidence            988888653

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-30  Score=222.09  Aligned_cols=283  Identities=13%  Similarity=0.135  Sum_probs=204.1

Q ss_pred             ceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc----cccCCCCCeeeEEeccC-CCEEEEecC
Q 035621           29 AILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL----HNIPVPEPVAPLATTAD-GSYLFTGGL  103 (387)
Q Consensus        29 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~l~~~~~  103 (387)
                      +.++..++|.+.|++|+|+|++.    +|++++.||+|++||++++...    ....|..+|.+++|+|+ +.+|++|+.
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~----~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~   77 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKS----LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV   77 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGT----EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCC----EEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccc
Confidence            56677889999999999999654    4455899999999999876543    33358899999999986 458999999


Q ss_pred             CCcEEEEeCCCCceeEEccCCCCC-eEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc--CC
Q 035621          104 SGNVYAISVPKGDILRSFSAHDKP-VSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH--ND  180 (387)
Q Consensus       104 dg~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~  180 (387)
                      ||.|++|++...........+... .....+.++...+++++.++.+++||++....        ..........+  ..
T Consensus        78 d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~--------~~~~~~~~~~~~~~~  149 (342)
T d1yfqa_          78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD--------GVIAVKNLNSNNTKV  149 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT--------BCEEEEESCSSSSSS
T ss_pred             ccceeeeecccccccccccccccccccccccccccccccccccccccceeecccccc--------ceeeecccccccccc
Confidence            999999999888777766554443 44555667888999999999999999843211        11111222222  22


Q ss_pred             CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceeEEEeC-CCCCeEEEEccCCcEEEEeccccc
Q 035621          181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT----FPCAIMGLALD-PTETDFFAAGSDGLIYKGLLKYQS  255 (387)
Q Consensus       181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~  255 (387)
                      ......+.+.  +..+++++.|+.|++||+...+......    ......+..+. +++..+++++.||.+.+|++....
T Consensus       150 ~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~  227 (342)
T d1yfqa_         150 KNKIFTMDTN--SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG  227 (342)
T ss_dssp             CCCEEEEEEC--SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred             eeeeeeeecc--CCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCc
Confidence            3334455555  3789999999999999998765433222    33455555554 466889999999999999987643


Q ss_pred             ccccccccee------EeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          256 RQQMHKGQEL------VTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       256 ~~~~~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      ..........      ......|...|++++|+|++++|++|+.||.|++||+++++.+..+..++.  +..+.|++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~--~~~~~~s~~  303 (342)
T d1yfqa_         228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE--DSVVKIACS  303 (342)
T ss_dssp             CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS--SEEEEEEEC
T ss_pred             ceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCC--CEEEEEEeC
Confidence            3222111111      111235677899999999999999999999999999999999998876544  444556553

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.2e-30  Score=215.77  Aligned_cols=252  Identities=10%  Similarity=0.107  Sum_probs=193.0

Q ss_pred             CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcE
Q 035621           28 GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNV  107 (387)
Q Consensus        28 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  107 (387)
                      .++++++++|..+|++++|+|        |++|+.||+|++||+.++.    ..|...|.++++++++ .+++++.|+++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~--------l~sgs~Dg~v~~Wd~~~~~----~~h~~~V~~~~~~~~~-~~~s~s~D~~v   69 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP--------LISGSYDGRIMEWSSSSMH----QDHSNLIVSLDNSKAQ-EYSSISWDDTL   69 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT--------TEEEETTSCEEETTTTEEE----CCCCSCEEEEECCSTT-CCEEEETTTEE
T ss_pred             cceeEEECCCCCceEEEEECc--------EEEEeCCCeEEEEECCCCC----CCCCCCEEEEEecCCC-eEEEEeecccc
Confidence            577899999999999999987        4558999999999987643    3477889999998765 57889999999


Q ss_pred             EEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEE
Q 035621          108 YAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITC  187 (387)
Q Consensus       108 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  187 (387)
                      ++|++...+       ....+.++.+++++..++++ .++.+.+|+.            .....+..+..+ .++.  ++
T Consensus        70 ~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~~-~~~~--~~  126 (287)
T d1pgua2          70 KVNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQS------------FTGDIIKSVRLN-SPGS--AV  126 (287)
T ss_dssp             EETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEET------------TTCCEEEEEECS-SCEE--EE
T ss_pred             ccccccccc-------cccceeeeeeccCCceEEEe-ecccceeeec------------cceeeeeecccc-ceee--ee
Confidence            999974321       34457888999888766665 4566788887            344455554433 3443  45


Q ss_pred             eeCCCCceEEEEeCC-CcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccce
Q 035621          188 CIGSFNSIIISCSMD-CTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQE  264 (387)
Q Consensus       188 ~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  264 (387)
                      ++++  ..+++++.+ +.+++|++...+....+.  +...+.+++|+|++.+|++|+.||.|++||+...        ..
T Consensus       127 ~~~~--~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~--------~~  196 (287)
T d1pgua2         127 SLSQ--NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR--------EV  196 (287)
T ss_dssp             EECS--SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------EE
T ss_pred             eccC--cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccc--------cc
Confidence            5654  566666665 579999998776665554  5678999999999999999999999999999873        23


Q ss_pred             eEeecccccccEEEEEEecC----------CCEEEEEeCCCcEEEEECCC-ccEEEEeecccCCCceeEEEEe
Q 035621          265 LVTLANRHDGVVVSVMMMNE----------GKNLVSAAEDGSVYIWEIEK-RQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       265 ~~~~~~~~~~~v~~~~~s~~----------~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      .......|..+|.+++|+|.          +.+|++|+.|++|++||+++ ++++..+.+| ...|+++.|.+
T Consensus       197 ~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h-~~~V~~v~~~~  268 (287)
T d1pgua2         197 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWET  268 (287)
T ss_dssp             EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS-TTCEEEEEEEE
T ss_pred             ccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC-CCCeEEEEECC
Confidence            33345579999999999874          46899999999999999977 5556666655 45899998865

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-27  Score=199.43  Aligned_cols=258  Identities=18%  Similarity=0.235  Sum_probs=199.2

Q ss_pred             eeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEE
Q 035621           30 ILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVY  108 (387)
Q Consensus        30 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~  108 (387)
                      .+.....|...|+|+.|++      .++++|+.||+|++||+++++++..+. |...|.+++|  ++++|++|+.|+.|+
T Consensus         7 ~i~~~~~~~~~V~c~~~d~------~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~   78 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQYDD------QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVR   78 (293)
T ss_dssp             CEECCCSSCCCEEEEECCS------SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEE
T ss_pred             EEeccCCCCCCEEEEEEcC------CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccc
Confidence            3445567888899987754      245568999999999999999998887 6788998887  678999999999999


Q ss_pred             EEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEe
Q 035621          109 AISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCC  188 (387)
Q Consensus       109 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  188 (387)
                      +|++..+........+....  ..+.+....++++..++.+.+|+....         ........+..|...+..+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~  147 (293)
T d1p22a2          79 VWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASP---------TDITLRRVLVGHRAAVNVVDFD  147 (293)
T ss_dssp             EEESSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSS---------SCCEEEEEECCCSSCEEEEEEE
T ss_pred             cccccccccccccccccccc--ccccccccceeecccccceeEeecccc---------ccccccccccccccccccceec
Confidence            99999998877766544433  344456678999999999999998432         2233455567788888877664


Q ss_pred             eCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEe
Q 035621          189 IGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVT  267 (387)
Q Consensus       189 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  267 (387)
                      +    ..+++++.|+.+++||+++++.+..+. +...+..+.++  +.++++++.||.|++||++...         ...
T Consensus       148 ~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~---------~~~  212 (293)
T d1p22a2         148 D----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA---------CLR  212 (293)
T ss_dssp             T----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC---------EEE
T ss_pred             c----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccce---------eee
Confidence            3    578899999999999999999988887 45667676664  5789999999999999998732         223


Q ss_pred             ecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCC---------ccEEEEeecccCCCceeEEE
Q 035621          268 LANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEK---------RQVVMVLKNELAGSISEMVI  324 (387)
Q Consensus       268 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~  324 (387)
                      ...+|...+..  +++++.+|++|+.||.|++||+.+         ..++..+.+|. +.|+++.|
T Consensus       213 ~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~-~~V~~v~~  275 (293)
T d1p22a2         213 VLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS-GRVFRLQF  275 (293)
T ss_dssp             EECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS-SCCCCEEE
T ss_pred             eecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCC-CCEEEEEE
Confidence            33466777764  566788999999999999999754         34567777664 47877765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=1.1e-28  Score=217.99  Aligned_cols=289  Identities=9%  Similarity=0.022  Sum_probs=196.0

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc--cC----C
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN--IP----V   82 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~--~~----~   82 (387)
                      -++++.+.||+|+|||+.+++.+.++..|. .+..++|+|++..++.    ++.|+.+++||+.+++....  ++    +
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~----~~~d~~v~vwd~~t~~~~~~~~i~~~~~~  107 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLV----IGRDARIDMIDLWAKEPTKVAEIKIGIEA  107 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEE----EETTSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEE----EeCCCCEEEEEccCCceeEEEEEeCCCCC
Confidence            356888999999999999999999998775 5899999997765543    78899999999998875443  22    2


Q ss_pred             CCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCe-----------EEEEEcCCCCEEEEEeC-CCcE
Q 035621           83 PEPVAPLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPV-----------SCLKISPDGSLLISGGD-DGVI  149 (387)
Q Consensus        83 ~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~l~~~~~-dg~i  149 (387)
                      ...+.+++|+|||++++++ ..++.+.+||..++++...+..|...+           ..+.+++++..++.... .+.+
T Consensus       108 ~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i  187 (426)
T d1hzua2         108 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  187 (426)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             cceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            3446677888999987655 478999999999998887776654444           44455555554444333 2344


Q ss_pred             EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEE-eCCCcEEEEeCCCCcE-------------
Q 035621          150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISC-SMDCTCKFWRLLNGTH-------------  215 (387)
Q Consensus       150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~-------------  215 (387)
                      .+++...           ..........+...+..+.++|++  ++++++ ..+..+.+++..+++.             
T Consensus       188 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (426)
T d1hzua2         188 LLVNYKD-----------IDNLTVTSIGAAPFLADGGWDSSH--RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG  254 (426)
T ss_dssp             EEEECSS-----------SSSCEEEEEECCSSEEEEEECTTS--CEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCS
T ss_pred             EEEEecc-----------ccceeeEEeccCCccEeeeECCCC--cEEEeeeecccceeeeecccccEEEEeccCCccccc
Confidence            4444311           111222334556667777777664  443333 3344455555544332             


Q ss_pred             -----------------------------------------EEEEe-cCCceeEEEeCCCCCeEEE-------EccCCcE
Q 035621          216 -----------------------------------------LSTVT-FPCAIMGLALDPTETDFFA-------AGSDGLI  246 (387)
Q Consensus       216 -----------------------------------------~~~~~-~~~~v~~~~~~~~~~~l~~-------~~~dg~i  246 (387)
                                                               ...+. |...+..++|+|++++|++       +..+++|
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv  334 (426)
T d1hzua2         255 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV  334 (426)
T ss_dssp             CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCE
T ss_pred             ceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEE
Confidence                                                     33333 3456788999999999995       4458899


Q ss_pred             EEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE-----eCCCcEEEEECCCccEEEEeeccc
Q 035621          247 YKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA-----AEDGSVYIWEIEKRQVVMVLKNEL  315 (387)
Q Consensus       247 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~  315 (387)
                      ++||+.+..................|...|.+++|||||++++.+     +.+|.|+|||.+++++...++++.
T Consensus       335 ~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~  408 (426)
T d1hzua2         335 AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR  408 (426)
T ss_dssp             EEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred             EEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC
Confidence            999998854332211100001123467789999999999977432     368889999999999999988764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=2.3e-26  Score=193.21  Aligned_cols=273  Identities=13%  Similarity=0.164  Sum_probs=215.0

Q ss_pred             EEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEE
Q 035621           11 ILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLA   90 (387)
Q Consensus        11 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~   90 (387)
                      .++++.|++|.|||+++++.+.+++.. ..+..++|+|++..+.   ++++.++.|++||+.+++.+..+.....+..++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~---v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~   80 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVY---VANAHSNDVSIIDTATNNVIATVPAGSSPQGVA   80 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE---EEEGGGTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEE---EEECCCCEEEEEECCCCceeeeeeccccccccc
Confidence            456788999999999999999998754 4478999999765331   236788999999999999998888777889999


Q ss_pred             eccCCCEEEE-ecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCcccccCCCCCCCC
Q 035621           91 TTADGSYLFT-GGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI-SGGDDGVIATVPIFQLVDEHTDDKNPD  168 (387)
Q Consensus        91 ~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~  168 (387)
                      |++++..+++ +..++.+.+|+..+++....+.. .....++.|+|+++.++ ++..++.+.+|+.            ..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~------------~~  147 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINT------------VT  147 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEET------------TT
T ss_pred             cccccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeec------------cc
Confidence            9999986655 55677899999999988888764 45678999999998765 4556788999998            44


Q ss_pred             ccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEcc---CC
Q 035621          169 DLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS---DG  244 (387)
Q Consensus       169 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg  244 (387)
                      ......+.. ...+..+.++++.  ..++++. .++.+.+|+....+....+.....+..++++++++.+++++.   ++
T Consensus       148 ~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~  224 (301)
T d1l0qa2         148 KAVINTVSV-GRSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFN  224 (301)
T ss_dssp             TEEEEEEEC-CSSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred             cceeeeccc-CCCceEEEeeccc--cceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceee
Confidence            445555443 4557788888875  5555555 457788899888888888888888999999999998887654   46


Q ss_pred             cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEE-EEEeCCCcEEEEECCCccEEEEeec
Q 035621          245 LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNL-VSAAEDGSVYIWEIEKRQVVMVLKN  313 (387)
Q Consensus       245 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~  313 (387)
                      .|++||..+..        ....+  .+...+.+++|+|||++| ++++.|+.|++||+++++++.++..
T Consensus       225 ~v~v~D~~t~~--------~~~~~--~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         225 TVSMIDTGTNK--------ITARI--PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEEEEETTTTE--------EEEEE--ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             eeeeeecCCCe--------EEEEE--cCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            79999998732        22222  234568999999999976 5777899999999999999998863

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=4.8e-25  Score=187.96  Aligned_cols=289  Identities=14%  Similarity=0.051  Sum_probs=204.2

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCC--CCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC---
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGS--RSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP---   83 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~---   83 (387)
                      +++++++.|++|+|||+++++.+.++..+  ...+.+++|+|++....   ++++.++.|.+||+.+++.+..+...   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~---v~~~~~~~v~v~D~~t~~~~~~~~~~~~~   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAY---ATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEE---EEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEE---EEECCCCeEEEEECCCCcEEEEEecCCCc
Confidence            58999999999999999999999988653  44578999999765432   23678999999999999988776643   


Q ss_pred             ---CCeeeEEeccCCCEEEEec------------CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 035621           84 ---EPVAPLATTADGSYLFTGG------------LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGV  148 (387)
Q Consensus        84 ---~~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  148 (387)
                         ..+..++|+|++++++++.            .+..+.+||..+++....+.. ...+..++|+|+++++++++.+  
T Consensus        79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--  155 (337)
T d1pbyb_          79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--  155 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--
T ss_pred             ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--
Confidence               2456899999999998775            356789999999998888764 4568899999999999998754  


Q ss_pred             EEEEeCCcccccCCCCCC---------CCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEE
Q 035621          149 IATVPIFQLVDEHTDDKN---------PDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTV  219 (387)
Q Consensus       149 i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  219 (387)
                      +.+||.............         ...........+.............+.........++.+.+||..++......
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE  235 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred             cceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence            677887432111000000         00000000000111111111111111122333344567999999988765443


Q ss_pred             --ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcE
Q 035621          220 --TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSV  297 (387)
Q Consensus       220 --~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  297 (387)
                        .+...+..+.++|++.+++.+  ++.|++||+.+.        ..+...  .+...+.+++|+|||++|++++.|+.|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~--------~~~~~~--~~~~~~~~~~~s~dG~~l~v~~~~~~i  303 (337)
T d1pbyb_         236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN--------ASIKRV--PLPHSYYSVNVSTDGSTVWLGGALGDL  303 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT--------EEEEEE--ECSSCCCEEEECTTSCEEEEESBSSEE
T ss_pred             ecCCCcceEEEEecccceEEEEc--cccEEEEECCCC--------cEEEEE--cCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence              356778889999999988766  578999999873        233332  355678999999999999999999999


Q ss_pred             EEEECCCccEEEEeeccc
Q 035621          298 YIWEIEKRQVVMVLKNEL  315 (387)
Q Consensus       298 ~iwd~~~~~~~~~~~~~~  315 (387)
                      ++||.++++.+.+++...
T Consensus       304 ~v~D~~t~~~v~~i~~~g  321 (337)
T d1pbyb_         304 AAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             EEEETTTCCEEEEEECGG
T ss_pred             EEEECCCCcEEEEEECCC
Confidence            999999999999987543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=1.7e-24  Score=190.60  Aligned_cols=288  Identities=11%  Similarity=0.032  Sum_probs=204.3

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc--ccC----C
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH--NIP----V   82 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~--~~~----~   82 (387)
                      -++++.+.+|+|.|||..+++++..+..+. .+..++|+|++.+++.    ++.|+.+++||+.+++...  .++    +
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~----~s~dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFV----IGRDGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEE----EETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEE----EcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence            346899999999999999999999998774 5899999997766554    7789999999998876432  333    2


Q ss_pred             CCCeeeEEeccCCCEE-EEecCCCcEEEEeCCCCceeEEccCC-----------CCCeEEEEEcCCCCEE-EEEeCCCcE
Q 035621           83 PEPVAPLATTADGSYL-FTGGLSGNVYAISVPKGDILRSFSAH-----------DKPVSCLKISPDGSLL-ISGGDDGVI  149 (387)
Q Consensus        83 ~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l-~~~~~dg~i  149 (387)
                      ...+....|+|||++| ++++.++.|++||..+++++..+..|           ......+.++|++..+ ++...++.|
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            2345666788899986 66778999999999999988776543           3456678999998865 556678999


Q ss_pred             EEEeCCcccccCCCCCCCCccceEee-eccCCCeEEEEEeeCCCCceEEEEe-CCCcEEEEeCCCCcEEEEEec------
Q 035621          150 ATVPIFQLVDEHTDDKNPDDLMLQKF-VAHNDSVTAITCCIGSFNSIIISCS-MDCTCKFWRLLNGTHLSTVTF------  221 (387)
Q Consensus       150 ~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~------  221 (387)
                      .+||..            ........ ..+......++++|++  +++++++ .++.+.++|..+++....+..      
T Consensus       188 ~~~d~~------------~~~~~~~~~i~~g~~~~~~~~spdg--~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~  253 (432)
T d1qksa2         188 LLVDYT------------DLNNLKTTEISAERFLHDGGLDGSH--RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH  253 (432)
T ss_dssp             EEEETT------------CSSEEEEEEEECCSSEEEEEECTTS--CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC
T ss_pred             EEEEcc------------CCCcceEEEEcccCccccceECCCC--CEEEEeccccceEEEeecccceEEEEeccCccccc
Confidence            999983            22222222 2355678889999985  6655555 456888999877655433311      


Q ss_pred             ---------------------------------------CCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc---
Q 035621          222 ---------------------------------------PCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM---  259 (387)
Q Consensus       222 ---------------------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---  259 (387)
                                                             ...+....++|++..+++++.++..++|+.........   
T Consensus       254 ~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~  333 (432)
T d1qksa2         254 PGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISG  333 (432)
T ss_dssp             CTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHT
T ss_pred             cCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeee
Confidence                                                   01345566777888888888888888886543211000   


Q ss_pred             ----ccc---------ceeEe-------ecccccccEEEEEEecCCCEEEEEe-----CCCcEEEEECCCccEEEEeecc
Q 035621          260 ----HKG---------QELVT-------LANRHDGVVVSVMMMNEGKNLVSAA-----EDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       260 ----~~~---------~~~~~-------~~~~~~~~v~~~~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                          ..+         .....       .+..|...|.+++|+|||++++.+.     .+|.|.|||..++++...+++.
T Consensus       334 sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         334 SVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             CEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             EEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence                000         00000       1124667899999999999886543     4688999999999999888765


Q ss_pred             c
Q 035621          315 L  315 (387)
Q Consensus       315 ~  315 (387)
                      .
T Consensus       414 ~  414 (432)
T d1qksa2         414 R  414 (432)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=4.9e-25  Score=188.61  Aligned_cols=296  Identities=11%  Similarity=0.047  Sum_probs=203.1

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEecc-CCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFS-GSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++|++++++|++++.+++|.+||+.+++.+.+++ .|...+.+++|+|++....   +++..++.|.+||+.+++.+..+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~---v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAY---VLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEE---EEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEE---EEECCCCcEEEEeCccCeeeeee
Confidence            5899999999999999999999999999999886 4566688999999765432   23678999999999999887665


Q ss_pred             CCC-------CCeeeEEeccCCCEEEEec------------CCCcEEEEeCCCCceeEEccC--CCCCeEEEEEcCCCCE
Q 035621           81 PVP-------EPVAPLATTADGSYLFTGG------------LSGNVYAISVPKGDILRSFSA--HDKPVSCLKISPDGSL  139 (387)
Q Consensus        81 ~~~-------~~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~  139 (387)
                      ...       ..+..++|+|||+++++++            .++.+.+|+..+++....+..  ....+..+.+++++..
T Consensus        79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (346)
T d1jmxb_          79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL  158 (346)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred             cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEE
Confidence            532       2467899999999998775            466788999887766544432  2345666777777776


Q ss_pred             EEEEeCCCcEEEEeCCcccccCCCCC---------CCCccceEeeeccCCCeEEE--EEeeCCCCceEEEEeCCCcEEEE
Q 035621          140 LISGGDDGVIATVPIFQLVDEHTDDK---------NPDDLMLQKFVAHNDSVTAI--TCCIGSFNSIIISCSMDCTCKFW  208 (387)
Q Consensus       140 l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~l~s~~~d~~i~iw  208 (387)
                      ++++   +.+.+|++...........         .+....+.........+...  ..........+.++..++.+.+|
T Consensus       159 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         159 YVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             EEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            6543   4578888743211100000         00000000000111111111  11111112445556667789999


Q ss_pred             eCCCCcEEEEEe--cCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC
Q 035621          209 RLLNGTHLSTVT--FPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK  286 (387)
Q Consensus       209 d~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  286 (387)
                      |+.++.......  +...+..+.+++++.+++.... +.|.+||..+.        ..+...  .+...+.+++|+|||+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~--------~~~~~~--~~~~~~~~va~s~DG~  304 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQR--------KLIKAA--NLDHTYYCVAFDKKGD  304 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTT--------EEEEEE--ECSSCCCEEEECSSSS
T ss_pred             ECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCC--------cEEEEE--cCCCCEEEEEEcCCCC
Confidence            999888665543  5677889999999988877654 57999999873        233332  2445689999999999


Q ss_pred             EEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          287 NLVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       287 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                      +|++++.|+.|++||+++++.+.+++.+
T Consensus       305 ~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         305 KLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             CEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            9999999999999999999999998854

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=2.9e-25  Score=191.22  Aligned_cols=191  Identities=13%  Similarity=0.070  Sum_probs=159.5

Q ss_pred             eeEEEcC-ccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC--cEEEEeCCCCcee
Q 035621           42 RGLTFAG-KPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG--NVYAISVPKGDIL  118 (387)
Q Consensus        42 ~~~~~~~-~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~  118 (387)
                      ..-.|+| ++.+.+.     ...|.|++||++.+...+ +.|...|.+++|+|||++|++++.+.  .|++||.++++..
T Consensus         6 ~~~~fSP~dG~~~a~-----~~~g~v~v~d~~~~~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~   79 (360)
T d1k32a3           6 FAEDFSPLDGDLIAF-----VSRGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE   79 (360)
T ss_dssp             GEEEEEECGGGCEEE-----EETTEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             hcccccCCCCCEEEE-----EECCeEEEEECCCCcEEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE
Confidence            4467898 6766553     356899999998776554 57889999999999999998776543  7999999887654


Q ss_pred             EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEE
Q 035621          119 RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS  198 (387)
Q Consensus       119 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s  198 (387)
                       .+..|...|.+++|+|++++|++++.++.+++|++            ........+..|...+.+++|+|++  ++|+.
T Consensus        80 -~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~spdg--~~la~  144 (360)
T d1k32a3          80 -KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL------------ETGKPTVIERSREAMITDFTISDNS--RFIAY  144 (360)
T ss_dssp             -ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET------------TTCCEEEEEECSSSCCCCEEECTTS--CEEEE
T ss_pred             -EeeCCCceEEeeeecccccccceeccccccccccc------------cccceeeeeecccccccchhhccce--eeeee
Confidence             56689999999999999999999999999999999            5666677788899999999999985  77775


Q ss_pred             Ee----------CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621          199 CS----------MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       199 ~~----------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                      +.          .++.+++||+.+++......+...+..++|+|+|++|++++.++.+.+|+...
T Consensus       145 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         145 GFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             EEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             eccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccc
Confidence            43          34569999999988777777788899999999999999999999999998643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1e-24  Score=192.30  Aligned_cols=258  Identities=12%  Similarity=0.015  Sum_probs=180.7

Q ss_pred             ccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE--c---cCCCCCeEEEE
Q 035621           58 SPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS--F---SAHDKPVSCLK  132 (387)
Q Consensus        58 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~---~~~~~~v~~~~  132 (387)
                      ++.+.||+|++||+.+++.+..++....+..++|+|||+++++++.|+.|++||+.+++....  +   .+|...+.+++
T Consensus        36 V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~  115 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKF  115 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCS
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeee
Confidence            447889999999999999999999888899999999999999999999999999998875432  2   24555667778


Q ss_pred             EcCCCCEEEEE-eCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe-----------EEEEEeeCCCCceEEEEe
Q 035621          133 ISPDGSLLISG-GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV-----------TAITCCIGSFNSIIISCS  200 (387)
Q Consensus       133 ~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----------~~~~~~~~~~~~~l~s~~  200 (387)
                      |+|||++++++ ..++.+++||.            ...........|...+           ..+..++++ ..++.+..
T Consensus       116 ~spDG~~l~v~~~~~~~v~i~d~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~-~~~~~~~~  182 (426)
T d1hzua2         116 KGYEDRYTIAGAYWPPQFAIMDG------------ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH-PEFIVNVK  182 (426)
T ss_dssp             TTCTTTEEEEEEEESSEEEEEET------------TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS-SEEEEEET
T ss_pred             ecCCCCEEEEeecCCCeEEEEcC------------CccceeEEeeccCCCccceeecCCCceeEEEECCCC-CEEEEecC
Confidence            88999987555 58899999998            4444555554444333           334444443 12233333


Q ss_pred             CCCcEEEEeCCCCc--EEEEEecCCceeEEEeCCCCCeEEEEcc-CCcEEEEecccccccccc-----------------
Q 035621          201 MDCTCKFWRLLNGT--HLSTVTFPCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMH-----------------  260 (387)
Q Consensus       201 ~d~~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~-----------------  260 (387)
                      ..+.+.+++.....  .+..+.....+..+.|+|++++++++.. +..+.+++..........                 
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (426)
T d1hzua2         183 ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHP  262 (426)
T ss_dssp             TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEET
T ss_pred             CCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecC
Confidence            34556666655544  3344557778899999999999888765 556777776543321100                 


Q ss_pred             ----------------------------ccceeEeecccccccEEEEEEecCCCEEEE-------EeCCCcEEEEECCCc
Q 035621          261 ----------------------------KGQELVTLANRHDGVVVSVMMMNEGKNLVS-------AAEDGSVYIWEIEKR  305 (387)
Q Consensus       261 ----------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-------~~~dg~i~iwd~~~~  305 (387)
                                                  ........+.+|...+..++|+|++++|++       ++.|++|+|||+.++
T Consensus       263 ~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~  342 (426)
T d1hzua2         263 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL  342 (426)
T ss_dssp             TTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred             CCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCC
Confidence                                        001222334578888999999999999994       556889999999999


Q ss_pred             cEEEEeec--------ccCCCceeEEEEecC
Q 035621          306 QVVMVLKN--------ELAGSISEMVIATGI  328 (387)
Q Consensus       306 ~~~~~~~~--------~~~~~v~~~~~~~~~  328 (387)
                      +...++..        .....+..+.|++..
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDG  373 (426)
T d1hzua2         343 DAKYQVLPIAEWADLGEGAKRVVQPEYNKRG  373 (426)
T ss_dssp             TSCCEEECHHHHHCCCSSCCCEEEEEECSSS
T ss_pred             CcCeEEeccchhcccCCCCccEEEEEECCCC
Confidence            88766532        123356666776543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=8.3e-22  Score=164.96  Aligned_cols=242  Identities=12%  Similarity=0.171  Sum_probs=190.7

Q ss_pred             cCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCC
Q 035621           59 PTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDG  137 (387)
Q Consensus        59 ~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~  137 (387)
                      +.+.+++|.+||+.+++.+..++....+..++|+|||++|+ +++.++.|.+||+.+++.+..+..+. .+..++|++++
T Consensus         7 ~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~   85 (301)
T d1l0qa2           7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDG   85 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS
T ss_pred             EECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccccc
Confidence            36789999999999999999999888899999999999875 66688999999999999999887665 56899999999


Q ss_pred             CEEEE-EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE
Q 035621          138 SLLIS-GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL  216 (387)
Q Consensus       138 ~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  216 (387)
                      ..+++ +..++.+.+|+.            ........+. +.....++.++|++ ..+++++..++.+.+|+..+....
T Consensus        86 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~-~~~~~~~~~~~~dg-~~~~~~~~~~~~~~~~~~~~~~~~  151 (301)
T d1l0qa2          86 KQVYVTNMASSTLSVIDT------------TSNTVAGTVK-TGKSPLGLALSPDG-KKLYVTNNGDKTVSVINTVTKAVI  151 (301)
T ss_dssp             SEEEEEETTTTEEEEEET------------TTTEEEEEEE-CSSSEEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccccccccccceeeeccc------------ccceeeeecc-ccccceEEEeecCC-Ceeeeeeccccceeeeecccccee
Confidence            86554 556778999998            4444555554 44566788898886 345567777899999999999999


Q ss_pred             EEEecCCceeEEEeCCCCCeEEEEccC-CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe---
Q 035621          217 STVTFPCAIMGLALDPTETDFFAAGSD-GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA---  292 (387)
Q Consensus       217 ~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---  292 (387)
                      ..+.....+..++++|++..+++++.+ +.+.+|+....         ...... .....+..++|+++++.++.++   
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~  221 (301)
T d1l0qa2         152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---------SVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDK  221 (301)
T ss_dssp             EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEEEE-ECSSEEEEEEECTTSSEEEEEEECS
T ss_pred             eecccCCCceEEEeeccccceeeecccccccccccccce---------eeeecc-cccCCcceeeccccccccccccccc
Confidence            999988889999999999998888765 55666666542         222222 2345678899999999877654   


Q ss_pred             CCCcEEEEECCCccEEEEeecccCCCceeEEEEec
Q 035621          293 EDGSVYIWEIEKRQVVMVLKNELAGSISEMVIATG  327 (387)
Q Consensus       293 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  327 (387)
                      .++.|++||+.+++++..+..+  ..+.+++|++.
T Consensus       222 ~~~~v~v~D~~t~~~~~~~~~~--~~~~~va~spd  254 (301)
T d1l0qa2         222 YFNTVSMIDTGTNKITARIPVG--PDPAGIAVTPD  254 (301)
T ss_dssp             SCCEEEEEETTTTEEEEEEECC--SSEEEEEECTT
T ss_pred             eeeeeeeeecCCCeEEEEEcCC--CCEEEEEEeCC
Confidence            3468999999999999888754  35778877653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.91  E-value=1.1e-20  Score=163.23  Aligned_cols=294  Identities=11%  Similarity=0.010  Sum_probs=201.8

Q ss_pred             ccccCCCcEEEee-----CCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeec------cccCCCCCeEEEEE
Q 035621            2 LHHLPCNEVILTS-----SPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASH------ISPTTGSGSVHLYN   70 (387)
Q Consensus         2 l~~s~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~~d~~v~vw~   70 (387)
                      ++++|||+.++..     +..+.|.+||..+++.+.++..+..+  .++|+|++...+..      ...+..++.|.+||
T Consensus        26 ~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D  103 (373)
T d2madh_          26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             cccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEE
Confidence            5789999988764     23467999999999999998766654  79999977655431      22345678999999


Q ss_pred             ccCCCcccccCCCC--------CeeeEEeccCCCEEEEec--CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE-
Q 035621           71 LWSSTPLHNIPVPE--------PVAPLATTADGSYLFTGG--LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL-  139 (387)
Q Consensus        71 ~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-  139 (387)
                      ..+++.+..+..+.        ....+.|+++++.++...  .++.+.+|+....+.....    ....++.++|+++. 
T Consensus       104 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~  179 (373)
T d2madh_         104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPST  179 (373)
T ss_pred             CCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEEEecCCCcE
Confidence            99999887765332        235688999998776654  4567899998777655443    34578899998875 


Q ss_pred             EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc----CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcE
Q 035621          140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH----NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTH  215 (387)
Q Consensus       140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  215 (387)
                      +++.+.|+.+.+|+..            ..........+    ..........+.+ +..++..+.++.+.+|+......
T Consensus       180 ~v~~~~dg~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~  246 (373)
T d2madh_         180 FYLLCAQGGLAKTDHA------------GGAAGAGLVGAMLTAAQNLLTQPAQANK-SGRIVWPVYSGKILQADISAAGA  246 (373)
T ss_pred             EEEEcCCCeEEEEEcC------------CceeeEEEeeeccccCccceeeeEEECC-CceEEEecCCceEEEEEcCCCeE
Confidence            4678899999999983            22222222211    1112222223333 24556667889999999887654


Q ss_pred             EEEEe-------------cCCceeEEEeCCCCCeEEE----------EccCCcEEEEeccccccccccccceeEeecccc
Q 035621          216 LSTVT-------------FPCAIMGLALDPTETDFFA----------AGSDGLIYKGLLKYQSRQQMHKGQELVTLANRH  272 (387)
Q Consensus       216 ~~~~~-------------~~~~v~~~~~~~~~~~l~~----------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  272 (387)
                      .....             .+.....+++++++..++.          ...++.+.+||..++        .....+  .+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~--------~~~~~~--~~  316 (373)
T d2madh_         247 TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--------QTSSQI--SL  316 (373)
T ss_pred             EEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC--------cEEEEe--cC
Confidence            32222             1233445667777665543          445667888888773        333333  35


Q ss_pred             cccEEEEEEecCCCE--EEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621          273 DGVVVSVMMMNEGKN--LVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       273 ~~~v~~~~~s~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  325 (387)
                      ...+..++|+|||+.  +++++.|++|++||+.+++.++.+..+.. .++.|++.
T Consensus       317 ~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~-~P~~l~~~  370 (373)
T d2madh_         317 GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGS-GPQVLSVM  370 (373)
T ss_pred             CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCC-CCcEEEEe
Confidence            677899999999984  46889999999999999999999986633 56666554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.6e-21  Score=164.45  Aligned_cols=299  Identities=12%  Similarity=0.089  Sum_probs=193.9

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEec--cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccc----cCCC
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHF--SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHN----IPVP   83 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~----~~~~   83 (387)
                      .+++++.|++|++|++.+...+..+  ..|.+.+..++|+|++..+.   +++..|+.|++|++........    ....
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~---v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~   82 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLY---VGVRPEFRVLAYRIAPDDGALTFAAESALP   82 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEE---EEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEE---EEECCCCeEEEEEEeCCCCcEEEeeecccC
Confidence            4577889999999998754333222  25778899999999866542   2366799999999976643322    2345


Q ss_pred             CCeeeEEeccCCCEEEEecC-CCcEEEEeCCCCceeEE--ccCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCcccc
Q 035621           84 EPVAPLATTADGSYLFTGGL-SGNVYAISVPKGDILRS--FSAHDKPVSCLKISPDGSLLISGGD-DGVIATVPIFQLVD  159 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~  159 (387)
                      ..+..++|+|||++|++++. ++.+.+|+.........  ...+...+.++.++|+++++++++. +..|.+|+......
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~  162 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  162 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence            66788999999999998875 66899998876654333  3356677889999999998887774 45688998732110


Q ss_pred             cCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE-EEEeCCCcEEEEeCCCCc----EEEEEe-------cCCceeE
Q 035621          160 EHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII-ISCSMDCTCKFWRLLNGT----HLSTVT-------FPCAIMG  227 (387)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~----~~~~~~-------~~~~v~~  227 (387)
                      .      ..................++|++++  ..+ .+....+...+|+.....    ....+.       .......
T Consensus       163 ~------~~~~~~~~~~~~g~~p~~i~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (333)
T d1ri6a_         163 L------VAQDPAEVTTVEGAGPRHMVFHPNE--QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD  234 (333)
T ss_dssp             E------EEEEEEEEECSTTCCEEEEEECTTS--SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred             c------eeeeceeeeeecCCCccEEEEeccc--eeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccccee
Confidence            0      0000111122334556788888875  444 444556778888765432    222221       1245677


Q ss_pred             EEeCCCCCeEEEE-ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEe-CCCcEEEE--ECC
Q 035621          228 LALDPTETDFFAA-GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAA-EDGSVYIW--EIE  303 (387)
Q Consensus       228 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw--d~~  303 (387)
                      ++++++++++++. ..++.+.+|++.......     .... ...+...+..++|+|||++|++++ .++.|++|  |.+
T Consensus       235 ~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~  308 (333)
T d1ri6a_         235 IHITPDGRHLYACDRTASLITVFSVSEDGSVL-----SKEG-FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE  308 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCCE-----EEEE-EEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred             EEEecccCceeeecccCCeEEEEEEcCCCCEE-----EEEE-EeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECC
Confidence            8999999977765 457889999887633211     1111 113445678899999999877665 56889999  456


Q ss_pred             CccEEEEeecccCCCceeEEEE
Q 035621          304 KRQVVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       304 ~~~~~~~~~~~~~~~v~~~~~~  325 (387)
                      +|++...-..+....+..|.++
T Consensus       309 tG~l~~~~~~~~g~~p~~v~~~  330 (333)
T d1ri6a_         309 QGLLHEKGRYAVGQGPMWVVVN  330 (333)
T ss_dssp             TTEEEEEEEEECSSSCCEEEEE
T ss_pred             CCcEEEEEeccCCCCCcEEEEE
Confidence            6765433332333345555544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=1.2e-21  Score=172.30  Aligned_cols=294  Identities=12%  Similarity=-0.014  Sum_probs=190.0

Q ss_pred             ccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCce--eEEc---cCCCCCeEEEE
Q 035621           58 SPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDI--LRSF---SAHDKPVSCLK  132 (387)
Q Consensus        58 ~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~---~~~~~~v~~~~  132 (387)
                      ++.+.+|+|.+||..+++.+..++....+..++|+|||+++++++.|+.+.+||+.+++.  ...+   ..|.+.+.+..
T Consensus        36 v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~  115 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKM  115 (432)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCS
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecc
Confidence            457899999999999999999998878899999999999999999999999999988763  2333   24555566667


Q ss_pred             EcCCCCEE-EEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec-----------cCCCeEEEEEeeCCCCceEEEEe
Q 035621          133 ISPDGSLL-ISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA-----------HNDSVTAITCCIGSFNSIIISCS  200 (387)
Q Consensus       133 ~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~~l~s~~  200 (387)
                      |+|||++| ++++.++.|++||.            .....+..+..           +......+.+++++ ..++++..
T Consensus       116 ~SpDG~~l~vs~~~~~~v~i~d~------------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~~~vs~~  182 (432)
T d1qksa2         116 EGWEDKYAIAGAYWPPQYVIMDG------------ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR-PEFIVNVK  182 (432)
T ss_dssp             TTCTTTEEEEEEEETTEEEEEET------------TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS-SEEEEEET
T ss_pred             cCCCCCEEEEEcCCCCeEEEEeC------------ccccceeeeccCCccccceeccCCCceeEEEECCCC-CEEEEEEc
Confidence            88899976 67788999999998            34444444332           34456677888875 34567777


Q ss_pred             CCCcEEEEeCCCCcEE--EEEecCCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccceeEeecccccccEE
Q 035621          201 MDCTCKFWRLLNGTHL--STVTFPCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV  277 (387)
Q Consensus       201 ~d~~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  277 (387)
                      .++.|.+||..+.+..  ..+.....+..++|+|+|+++++++. ++.+.++|.............    ....|.....
T Consensus       183 ~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g----~~~~~~~~~~  258 (432)
T d1qksa2         183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG----GQTPHPGRGA  258 (432)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS----SSSBCCTTCE
T ss_pred             cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccC----ccccccCccc
Confidence            8899999999887754  45556778899999999998888766 567888888764322111000    0112333444


Q ss_pred             EEEEecCCCEEEEEe-CCCcEEEEECCCcc-------EEEEeecccCCCceeEEEEecCCCceeeEEEecCCCCCCCCCc
Q 035621          278 SVMMMNEGKNLVSAA-EDGSVYIWEIEKRQ-------VVMVLKNELAGSISEMVIATGIGGSRGCGVVKTGKAGNDSGGG  349 (387)
Q Consensus       278 ~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (387)
                      ...+...+...++.. .|+.|.+|+.....       ....+..+..    ...+....++.+.+|...+..........
T Consensus       259 ~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g----~~~~~~s~p~~~~lw~~~~~~~~~~~~~s  334 (432)
T d1qksa2         259 NFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG----GSLFIKTHPNSQYLYVDATLNPEAEISGS  334 (432)
T ss_dssp             EEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS----CCCCEECCTTCSEEEEECTTCSSHHHHTC
T ss_pred             ceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCC----CeEEEEecCCccceeecccCCCCCCeeeE
Confidence            444544444444443 37788888765542       2222222111    11223334555566655543321111111


Q ss_pred             ceeeeccceeccccccchhhhce
Q 035621          350 VFEMYGEKLLDLSIKNTIELENV  372 (387)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~  372 (387)
                      ..-.-++.....+.+++.++|+.
T Consensus       335 v~vpDg~~la~~s~d~~~k~w~~  357 (432)
T d1qksa2         335 VAVFDIKAMTGDGSDPEFKTLPI  357 (432)
T ss_dssp             EEEEEGGGCCCSSSCCCEEEECH
T ss_pred             EEEEechhhcccccCCceEeccc
Confidence            12123344444556667777654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=2.1e-21  Score=166.66  Aligned_cols=290  Identities=12%  Similarity=0.068  Sum_probs=195.7

Q ss_pred             ccccCCCcEEEee-----CCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeee------ccccCCCCCeEEEEE
Q 035621            2 LHHLPCNEVILTS-----SPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAAS------HISPTTGSGSVHLYN   70 (387)
Q Consensus         2 l~~s~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~~d~~v~vw~   70 (387)
                      .+.+|||+++++.     ..++.|.+||..+++.+.++..+..+  .++|+|++..+..      ....+..++.|++||
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            4679999988764     34567999999999999988765544  7999997754321      122345688999999


Q ss_pred             ccCCCcccccCC--------CCCeeeEEeccCCCEEEEec--CCCcEEEEeCCCCceeEEccCCCC-------CeEEEEE
Q 035621           71 LWSSTPLHNIPV--------PEPVAPLATTADGSYLFTGG--LSGNVYAISVPKGDILRSFSAHDK-------PVSCLKI  133 (387)
Q Consensus        71 ~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~-------~v~~~~~  133 (387)
                      ..+++....+..        ......++|+|++++++++.  .+..+.+|+..+++.+..+..+..       ....+.+
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH  164 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEE
Confidence            999987765541        23456789999999888764  456899999999988877764432       2233455


Q ss_pred             cCCCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC
Q 035621          134 SPDGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN  212 (387)
Q Consensus       134 ~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  212 (387)
                      +++++.++... .++.+.+++....                 ...+...+....+.+.  +..++.++.++.+++|++..
T Consensus       165 ~~dg~~~~v~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~  225 (355)
T d2bbkh_         165 CRDGSLAKVAFGTEGTPEITHTEVF-----------------HPEDEFLINHPAYSQK--AGRLVWPTYTGKIHQIDLSS  225 (355)
T ss_dssp             ETTSCEEEEECCSSSCCEEEECCCC-----------------SCTTSCBCSCCEEETT--TTEEEEEBTTSEEEEEECTT
T ss_pred             cCCCCEEEEEecCCCeEEEEecccc-----------------cceecceeeeccccCC--CCeEEEecCCCeEEEEecCC
Confidence            56555444332 2333444433110                 0112223334455554  37788889999999999988


Q ss_pred             CcEEEE--Ee-----------cCCceeEEEeCCCCCeEEEEccC----------CcEEEEeccccccccccccceeEeec
Q 035621          213 GTHLST--VT-----------FPCAIMGLALDPTETDFFAAGSD----------GLIYKGLLKYQSRQQMHKGQELVTLA  269 (387)
Q Consensus       213 ~~~~~~--~~-----------~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~  269 (387)
                      +.....  ..           .+.....+++++++..++....+          ..|.+||..+..        ....+ 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~--------~~~~~-  296 (355)
T d2bbkh_         226 GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE--------RLAKF-  296 (355)
T ss_dssp             SSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--------EEEEE-
T ss_pred             CcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc--------EEEEe-
Confidence            764321  11           11234568899999988877554          368999988732        22222 


Q ss_pred             ccccccEEEEEEecCCC--EEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEE
Q 035621          270 NRHDGVVVSVMMMNEGK--NLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMV  323 (387)
Q Consensus       270 ~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~  323 (387)
                       .+...+.+++|+|||+  ++++++.|+.|++||+++++.++++..+.. .+..+.
T Consensus       297 -~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~-~p~~i~  350 (355)
T d2bbkh_         297 -EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH-GPQVIT  350 (355)
T ss_dssp             -EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS-SCCEEE
T ss_pred             -cCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCC-CccEEE
Confidence             2345688999999998  456778899999999999999999975522 344443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.7e-20  Score=159.43  Aligned_cols=234  Identities=12%  Similarity=0.072  Sum_probs=172.7

Q ss_pred             ccccCCCcEE-EeeCCCCcEEEEeCCCCceeEeccCCCC-----CceeEEEcCccceeee--------ccccCCCCCeEE
Q 035621            2 LHHLPCNEVI-LTSSPEGPITAYNPSSGAILAHFSGSRS-----PRRGLTFAGKPFIAAS--------HISPTTGSGSVH   67 (387)
Q Consensus         2 l~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~--------~~~~~~~d~~v~   67 (387)
                      ++|+|||+++ ++++.++.|.+||+.+++.+..+..+..     .+..++|+|+......        .......+..+.
T Consensus        39 i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~  118 (337)
T d1pbyb_          39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA  118 (337)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred             EEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccccccee
Confidence            5799999987 5678899999999999999888765543     3667899986543322        111123578899


Q ss_pred             EEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCE--------
Q 035621           68 LYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSL--------  139 (387)
Q Consensus        68 vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------  139 (387)
                      +||..+++....+.....+..++|+|+|+++++++.  .+.+||..+++....+..+... ....+.|++..        
T Consensus       119 ~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  195 (337)
T d1pbyb_         119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESS  195 (337)
T ss_dssp             EEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTT
T ss_pred             eccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCcc-ccceecCCcceeecccccc
Confidence            999999999888888888999999999999999864  4788999998887776543221 11222232221        


Q ss_pred             ----------------EEEEeCCCcEEEEeCCcccccCCCCCCCCcc-ceEeeeccCCCeEEEEEeeCCCCceEEEEeCC
Q 035621          140 ----------------LISGGDDGVIATVPIFQLVDEHTDDKNPDDL-MLQKFVAHNDSVTAITCCIGSFNSIIISCSMD  202 (387)
Q Consensus       140 ----------------l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d  202 (387)
                                      ...+..++.+.+|++.            ... ....+..+...+..+.++++.  .+++.+  +
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~  259 (337)
T d1pbyb_         196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLE------------TGEMAMREVRIMDVFYFSTAVNPAK--TRAFGA--Y  259 (337)
T ss_dssp             TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT------------TCCEEEEEEEECSSCEEEEEECTTS--SEEEEE--E
T ss_pred             ceeeeeeeeeeeccceeeecccCccEEEEEcC------------CCcEEEEEecCCCcceEEEEecccc--eEEEEc--c
Confidence                            1122233456666662            222 233445566777777777764  666554  5


Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621          203 CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       203 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  254 (387)
                      +.|++||+.+++.+..+.+...+.+++|+|||++|++++.++.|++||..+.
T Consensus       260 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         260 NVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             ccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            8899999999999999999999999999999999999999999999999874

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.82  E-value=4.6e-19  Score=150.97  Aligned_cols=252  Identities=10%  Similarity=0.043  Sum_probs=175.6

Q ss_pred             EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC--CCCCeeeEEeccCCCEEE-EecCCCcEEEEeCCCCceeEE
Q 035621           44 LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP--VPEPVAPLATTADGSYLF-TGGLSGNVYAISVPKGDILRS  120 (387)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~  120 (387)
                      +++++++.    ++++++.+++|.+||+.+++.+..++  +...+.+++|+|||++++ ++..++.|.+||+.+++.+..
T Consensus         2 ~a~~~~~~----~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHE----YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCE----EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCc----EEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence            45666443    34458999999999999999988765  345688999999999875 556789999999999988877


Q ss_pred             ccCCC------CCeEEEEEcCCCCEEEEEe------------CCCcEEEEeCCcccccCCCCCCCCccceEeeec--cCC
Q 035621          121 FSAHD------KPVSCLKISPDGSLLISGG------------DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA--HND  180 (387)
Q Consensus       121 ~~~~~------~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~  180 (387)
                      +....      ..+..++|+|||+++++++            .++.+.+|+...            ......+..  ...
T Consensus        78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~~~  145 (346)
T d1jmxb_          78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD------------GLEAKPVRTFPMPR  145 (346)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG------------GGGBCCSEEEECCS
T ss_pred             ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc------------ceeeeEEEeeeccC
Confidence            65322      2356899999999988775            356778887732            222222221  223


Q ss_pred             CeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEcc-CCc--------------
Q 035621          181 SVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS-DGL--------------  245 (387)
Q Consensus       181 ~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--------------  245 (387)
                      .+..+.+.++  +.++++   ++.+.+|++.+++.+..+........+.++|++..++.... ++.              
T Consensus       146 ~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (346)
T d1jmxb_         146 QVYLMRAADD--GSLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK  220 (346)
T ss_dssp             SCCCEEECTT--SCEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred             ceEEEEecCC--CEEEEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCc
Confidence            3444554444  244443   25689999999999998887777777778887766544332 333              


Q ss_pred             -----------EEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecc
Q 035621          246 -----------IYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNE  314 (387)
Q Consensus       246 -----------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  314 (387)
                                 +.+|+...        ..........|...+..+.+++++.+++.... +.|++||..+++.+..+...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~  291 (346)
T d1jmxb_         221 QDPATADLLYGYLSVDLKT--------GKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLD  291 (346)
T ss_dssp             ---CCCEEEEEEEEEETTT--------CCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECS
T ss_pred             eeEeeccCCceEEEEECCC--------CceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCC
Confidence                       34444433        22233334467778899999999888887754 57999999999999888643


Q ss_pred             cCCCceeEEEEec
Q 035621          315 LAGSISEMVIATG  327 (387)
Q Consensus       315 ~~~~v~~~~~~~~  327 (387)
                        ..+.+++|++.
T Consensus       292 --~~~~~va~s~D  302 (346)
T d1jmxb_         292 --HTYYCVAFDKK  302 (346)
T ss_dssp             --SCCCEEEECSS
T ss_pred             --CCEEEEEEcCC
Confidence              36888888764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.80  E-value=5.6e-17  Score=139.67  Aligned_cols=268  Identities=8%  Similarity=-0.070  Sum_probs=170.7

Q ss_pred             ccccCCCcEEEeeC----------CCCcEEEEeCCCCceeEeccCCCCCce-------eEEEcCccceeeeccccCCCCC
Q 035621            2 LHHLPCNEVILTSS----------PEGPITAYNPSSGAILAHFSGSRSPRR-------GLTFAGKPFIAASHISPTTGSG   64 (387)
Q Consensus         2 l~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~-------~~~~~~~~~~~~~~~~~~~~d~   64 (387)
                      ++|||||++|++++          .++.|.+||..+++.+..+..+.....       .+.|+++.....  +.....++
T Consensus        71 ~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~--v~~~~~~~  148 (373)
T d2madh_          71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLL--FFQFAAGP  148 (373)
T ss_pred             EEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEE--EEEEcCCC
Confidence            57999999998874          457899999999999988876665543       355555433221  11134456


Q ss_pred             eEEEEEccCCCcccccCCCCCeeeEEeccCCCEE-EEecCCCcEEEEeCCCCceeEEccCC------CCCeEEEEEcCCC
Q 035621           65 SVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYL-FTGGLSGNVYAISVPKGDILRSFSAH------DKPVSCLKISPDG  137 (387)
Q Consensus        65 ~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~  137 (387)
                      .+.+|+....+.....   ....++.++|+++.+ ++.+.|+.+.+|+...++.......+      ......+.+.+++
T Consensus       149 ~~~~~~~~~~~~~~~~---~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (373)
T d2madh_         149 AVGLVVQGGSSDDQLL---SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG  225 (373)
T ss_pred             ceEEeeccCCeEEEEe---ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc
Confidence            6777777665544333   346678899998765 57788999999999888776654322      2223445566655


Q ss_pred             CEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCC--------CCceEEEEeCCCcEEEEe
Q 035621          138 SLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGS--------FNSIIISCSMDCTCKFWR  209 (387)
Q Consensus       138 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~l~s~~~d~~i~iwd  209 (387)
                      . ++..+.++.+.+|+...............................+++++++        .+..+++...++.+.+||
T Consensus       226 ~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d  304 (373)
T d2madh_         226 R-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             e-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEE
Confidence            4 4556678899999874321100000000000000001111122233333332        124556667788999999


Q ss_pred             CCCCcEEEEEecCCceeEEEeCCCCCe--EEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecC
Q 035621          210 LLNGTHLSTVTFPCAIMGLALDPTETD--FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNE  284 (387)
Q Consensus       210 ~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  284 (387)
                      ..+++.+..+.+...+..++|+|||+.  +++++.|+.|++||..+++        .+. ....+....+.+++.++
T Consensus       305 ~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~--------~~~-~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         305 GLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD--------QDQ-STVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC--------EEE-EECCCCCCCcEEEEecC
Confidence            999999999999999999999999985  4567889999999999843        332 23345666677776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=1.3e-17  Score=143.54  Aligned_cols=295  Identities=11%  Similarity=-0.005  Sum_probs=186.8

Q ss_pred             cccCCCcE--E-EeeCCCCc--EEEEeCCCCceeEeccCCCCCceeEEEcCccceee------eccccCCCCCeEEEEEc
Q 035621            3 HHLPCNEV--I-LTSSPEGP--ITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAA------SHISPTTGSGSVHLYNL   71 (387)
Q Consensus         3 ~~s~~~~~--l-~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~~d~~v~vw~~   71 (387)
                      +..++++.  + +....+|.  |.+||..+++.+..+..+..+  .++|+|++...+      ..++.+..|+.|.+||.
T Consensus        26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~  103 (368)
T d1mdah_          26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP  103 (368)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred             ccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEEC
Confidence            45677764  2 23444444  777799999999988776654  588999765432      23455778999999999


Q ss_pred             cCCCcccccCCC--------CCeeeEEeccCCCEEEEec-CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEE
Q 035621           72 WSSTPLHNIPVP--------EPVAPLATTADGSYLFTGG-LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLIS  142 (387)
Q Consensus        72 ~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  142 (387)
                      .+++++..+..+        .....++|+|||++|+++. .++.+.+||+.+++....+..+.....   +......++.
T Consensus       104 ~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~  180 (368)
T d1mdah_         104 VTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYL  180 (368)
T ss_dssp             TTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEEC
T ss_pred             CCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEE
Confidence            999887766421        2345799999999998775 568999999999998888765543321   1112345666


Q ss_pred             EeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec-
Q 035621          143 GGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF-  221 (387)
Q Consensus       143 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-  221 (387)
                      .+.||.+.++++.........      .....+..+...+....+.++  +..+.+  ..+.+.++++..+........ 
T Consensus       181 ~~~Dg~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--g~~~~~--~~~~v~~~~~~~~~~~~~~~~~  250 (368)
T d1mdah_         181 GSCPASLAASDLAAAPAAAGI------VGAQCTGAQNCSSQAAQANYP--GMLVWA--VASSILQGDIPAAGATMKAAID  250 (368)
T ss_dssp             CCCTTSCEEEECCSSCCCCEE------CCCCSCTTSCBCSCCEEETTT--TEEEEC--BSSCCEEEECCSSCCEEECCCC
T ss_pred             EcCCCCEEEEEecCCceeeee------eecccccccccceeecccccC--cEEEEe--cCCCEEEEeecCCceEEEeecc
Confidence            777888777776322111000      000111122223333443333  244333  345566666655543322211 


Q ss_pred             ------------CCceeEEEeCCCCCeEEEEccCC---------cEEEEeccccccccccccceeEeecccccccEEEEE
Q 035621          222 ------------PCAIMGLALDPTETDFFAAGSDG---------LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVM  280 (387)
Q Consensus       222 ------------~~~v~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  280 (387)
                                  +.....++++|++..+++...++         .|.+||..+..        .+..+  .+...+.+++
T Consensus       251 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~--------~~~~~--~~~~~~~~~a  320 (368)
T d1mdah_         251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--------TSGPI--SNGHDSDAII  320 (368)
T ss_dssp             SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--------EEECC--EEEEEECEEE
T ss_pred             cccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc--------EeEEe--cCCCceeEEE
Confidence                        12234588899998887764432         48889988743        22222  2445788999


Q ss_pred             EecCCC--EEEEEeCCCcEEEEECCCccEEEEeecccCCCceeEEE
Q 035621          281 MMNEGK--NLVSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVI  324 (387)
Q Consensus       281 ~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  324 (387)
                      |+|||+  .++++..|+.|++||..+++.+.+++..  ..++.|.+
T Consensus       321 ~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g--~~P~~l~~  364 (368)
T d1mdah_         321 AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD--KGPESLSV  364 (368)
T ss_dssp             ECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC--SCCCEEEC
T ss_pred             ECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC--CCCCEEEE
Confidence            999997  3567778999999999999999998743  24555544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=6.3e-17  Score=136.88  Aligned_cols=257  Identities=13%  Similarity=0.157  Sum_probs=170.6

Q ss_pred             ccCCCCCeEEEEEccCCCc---ccccCCCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCCCceeEEc---cCCCCCeEE
Q 035621           58 SPTTGSGSVHLYNLWSSTP---LHNIPVPEPVAPLATTADGSYLFTGG-LSGNVYAISVPKGDILRSF---SAHDKPVSC  130 (387)
Q Consensus        58 ~~~~~d~~v~vw~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~---~~~~~~v~~  130 (387)
                      ++++.+++|++|+++....   ++.+.+++.+..++|+|||++|++++ .|+.|++|++........+   ..+...+..
T Consensus         8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~   87 (333)
T d1ri6a_           8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH   87 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE
T ss_pred             EECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceE
Confidence            3467899999999976543   45566889999999999999996554 5899999999766433222   234456788


Q ss_pred             EEEcCCCCEEEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEe-CCCcEEEE
Q 035621          131 LKISPDGSLLISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCS-MDCTCKFW  208 (387)
Q Consensus       131 ~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~d~~i~iw  208 (387)
                      ++|+|||++|++++. ++.+.+|+...          ...........+...+.++.++|++  ++++.++ .+..+.+|
T Consensus        88 l~~spDg~~l~v~~~~~~~v~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~s~d~--~~~~~~~~~~~~i~~~  155 (333)
T d1ri6a_          88 ISTDHQGQFVFVGSYNAGNVSVTRLED----------GLPVGVVDVVEGLDGCHSANISPDN--RTLWVPALKQDRICLF  155 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEET----------TEEEEEEEEECCCTTBCCCEECTTS--SEEEEEEGGGTEEEEE
T ss_pred             EEEcCCCCEEeecccCCCceeeecccc----------ccceecccccCCCccceEEEeeecc--eeeeccccccceeeEE
Confidence            999999999998875 66888887732          1122233344566678888999886  5555555 45679999


Q ss_pred             eCCCCcEEEEE-------ecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeec--ccccccEEE
Q 035621          209 RLLNGTHLSTV-------TFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLA--NRHDGVVVS  278 (387)
Q Consensus       209 d~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~~  278 (387)
                      +..........       .....+..++|++++..++... ..+...+++.......... ........  .........
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  234 (333)
T d1ri6a_         156 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC-VQTLDMMPENFSDTRWAAD  234 (333)
T ss_dssp             EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE-EEEEECSCTTCCSCCCEEE
T ss_pred             EeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceee-eeeeeeeecCCCcccccee
Confidence            98775433222       1345678899999998887665 4667788876543221110 00111110  123345778


Q ss_pred             EEEecCCCEEEE-EeCCCcEEEEECCCccEEEEeecc--cCCCceeEEEEec
Q 035621          279 VMMMNEGKNLVS-AAEDGSVYIWEIEKRQVVMVLKNE--LAGSISEMVIATG  327 (387)
Q Consensus       279 ~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~  327 (387)
                      +++++++++++. +..++.+.+|++........+..+  ..+.+.+++|++.
T Consensus       235 ~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spD  286 (333)
T d1ri6a_         235 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS  286 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTT
T ss_pred             EEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCC
Confidence            899999987665 456788999998765443333322  2345777877653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=2e-17  Score=141.50  Aligned_cols=234  Identities=11%  Similarity=-0.016  Sum_probs=157.2

Q ss_pred             ccccCCCcEEEeeC----------CCCcEEEEeCCCCceeEeccCCCC-------CceeEEEcCccceeeeccccCCCCC
Q 035621            2 LHHLPCNEVILTSS----------PEGPITAYNPSSGAILAHFSGSRS-------PRRGLTFAGKPFIAASHISPTTGSG   64 (387)
Q Consensus         2 l~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~d~   64 (387)
                      ++|||||++|++.+          .++.|++||+.+++.+..+..+..       ....++|++++....  ++..+.+.
T Consensus        52 ~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~--v~~~~~~~  129 (355)
T d2bbkh_          52 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLL--FYQFSPAP  129 (355)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEE--EEECSSSC
T ss_pred             eEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeE--EecCCCCc
Confidence            57999999887643          478999999999998877654332       346788998665432  22356778


Q ss_pred             eEEEEEccCCCcccccCCCCC--------eeeEEeccCCCEEEEec-CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcC
Q 035621           65 SVHLYNLWSSTPLHNIPVPEP--------VAPLATTADGSYLFTGG-LSGNVYAISVPKGDILRSFSAHDKPVSCLKISP  135 (387)
Q Consensus        65 ~v~vw~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~  135 (387)
                      .+.+|+..+++.+..+..+..        ...+.++++++.++... .++.+.+++......     .+...+....+.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  204 (355)
T d2bbkh_         130 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQ  204 (355)
T ss_dssp             EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEET
T ss_pred             eeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccC
Confidence            999999999988777664432        23355666666555432 333444544433221     2334455667888


Q ss_pred             CCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeecc----------CCCeEEEEEeeCCCCceEEEEeCC---
Q 035621          136 DGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAH----------NDSVTAITCCIGSFNSIIISCSMD---  202 (387)
Q Consensus       136 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~~l~s~~~d---  202 (387)
                      ++..++.++.++.+++|++.....          ..+.....+          ......+++++++  ..++....+   
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~----------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~--~~~~~~~~~~~~  272 (355)
T d2bbkh_         205 KAGRLVWPTYTGKIHQIDLSSGDA----------KFLPAVEALTEAERADGWRPGGWQQVAYHRAL--DRIYLLVDQRDE  272 (355)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTSSC----------EECCCEESSCHHHHHTTEEECSSSCEEEETTT--TEEEEEEEECCT
T ss_pred             CCCeEEEecCCCeEEEEecCCCcE----------EEEeccCCcccceEeeeeeccceEEEEEeCCC--CeEEEEeccCCc
Confidence            888899999999999999843210          011111111          1223346677775  444443332   


Q ss_pred             -------CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCe--EEEEccCCcEEEEecccc
Q 035621          203 -------CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETD--FFAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       203 -------~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~i~d~~~~  254 (387)
                             ..|.+||..+++.+..+.....+.+++|+|||+.  ++++..|+.|++||..++
T Consensus       273 ~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         273 WRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  333 (355)
T ss_dssp             TCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             eeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence                   4699999999999999988888999999999973  455677999999999884

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.74  E-value=8.1e-16  Score=136.63  Aligned_cols=143  Identities=15%  Similarity=0.119  Sum_probs=108.5

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEec-----cCCCCCceeEEEcCccceeeec-----cccCCCCCeEEEEEc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHF-----SGSRSPRRGLTFAGKPFIAASH-----ISPTTGSGSVHLYNL   71 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~-----~~~~~~d~~v~vw~~   71 (387)
                      +.|.++++++..  .++.|.+||+.+++....+     ..|...|.++.|+|++..++..     +..-+.++.+.+||+
T Consensus        22 ~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~   99 (470)
T d2bgra1          22 LRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (470)
T ss_dssp             CEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence            468899988775  4688999999999876544     4456779999999987654321     111245678999999


Q ss_pred             cCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCC------------------CCCeEEEEE
Q 035621           72 WSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAH------------------DKPVSCLKI  133 (387)
Q Consensus        72 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------~~~v~~~~~  133 (387)
                      .+++......++..+....|+|||+.+|.. .++.+.+|+..+++..+....+                  .+....+.|
T Consensus       100 ~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w  178 (470)
T d2bgra1         100 NKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW  178 (470)
T ss_dssp             TTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE
T ss_pred             CCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEE
Confidence            998877666688889999999999999986 5678999999888766543221                  233466889


Q ss_pred             cCCCCEEEEEeCCC
Q 035621          134 SPDGSLLISGGDDG  147 (387)
Q Consensus       134 ~~~~~~l~~~~~dg  147 (387)
                      +|||++|+....|.
T Consensus       179 SPDGk~ia~~~~d~  192 (470)
T d2bgra1         179 SPNGTFLAYAQFND  192 (470)
T ss_dssp             CTTSSEEEEEEEEC
T ss_pred             CCCCCccceeEecC
Confidence            99999999887653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.64  E-value=2.2e-15  Score=128.88  Aligned_cols=349  Identities=11%  Similarity=-0.036  Sum_probs=207.0

Q ss_pred             EEeeCCCCcEEEEeCCCCceeEeccCC------------------------------CCCceeEEEcCccceeeeccccC
Q 035621           11 ILTSSPEGPITAYNPSSGAILAHFSGS------------------------------RSPRRGLTFAGKPFIAASHISPT   60 (387)
Q Consensus        11 l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------------~~~v~~~~~~~~~~~~~~~~~~~   60 (387)
                      +++|+.+|.|.||++.+++.+.++.-.                              ..........|++.++   +++.
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~l---fV~d   90 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYL---FIND   90 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEE---EEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEE---EEEc
Confidence            678889999999999999887776321                              0111111123333221   2335


Q ss_pred             CCCCeEEEEEccCCCcccccC--CCCCeeeEEeccCCC--EEEEecCCC-----------------cEEEEeCCCCceeE
Q 035621           61 TGSGSVHLYNLWSSTPLHNIP--VPEPVAPLATTADGS--YLFTGGLSG-----------------NVYAISVPKGDILR  119 (387)
Q Consensus        61 ~~d~~v~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~--~l~~~~~dg-----------------~i~i~d~~~~~~~~  119 (387)
                      ..+++|.++|+.+++....+.  ....+..++|+|+|+  +++..+.+.                 .+..+|..+.+...
T Consensus        91 ~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~  170 (441)
T d1qnia2          91 KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW  170 (441)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE
T ss_pred             CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE
Confidence            678899999999998777544  557899999999998  444444332                 23557888887776


Q ss_pred             EccCCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEE
Q 035621          120 SFSAHDKPVSCLKISPDGSLLISGGDDGV-IATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS  198 (387)
Q Consensus       120 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s  198 (387)
                      ++.. .+.+..+.|+|+|+++++++.+.. +..++.            ........+.... .-..+.+.+++  +++..
T Consensus       171 qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~------------~t~~~~d~i~v~n-~p~~~~~~~dG--k~~~v  234 (441)
T d1qnia2         171 QVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAG------------TMRNDRDWVVVFN-VERIAAAVKAG--NFKTI  234 (441)
T ss_dssp             EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHH------------HTCSSBCEEEEEE-HHHHHHHHHTT--CCBCC
T ss_pred             EEec-CCCccceEECCCCCEEEEEecCCCceEEEec------------cCcceEEEEEeCC-ccceEEEecCC--CEEEe
Confidence            6654 345788999999999998886643 222222            0111111111110 00112334553  55544


Q ss_pred             EeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEE-ccCCcEEEEeccccccccccc---cceeEeecccccc
Q 035621          199 CSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAA-GSDGLIYKGLLKYQSRQQMHK---GQELVTLANRHDG  274 (387)
Q Consensus       199 ~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~  274 (387)
                       +.++.+.+++....+.+..++.+.....+.++|||++++++ ..++.|.+||+..........   ...+... ....-
T Consensus       235 -~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~-~~~gl  312 (441)
T d1qnia2         235 -GDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE-PELGL  312 (441)
T ss_dssp             -TTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC-CBCCS
T ss_pred             -CCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee-ccccc
Confidence             44678888888888888888877788999999999998775 459999999997633211100   0111111 11122


Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCC----------ccEEEEeecccCCCceeEEEEe---cCCCce-eeEEEe-c
Q 035621          275 VVVSVMMMNEGKNLVSAAEDGSVYIWEIEK----------RQVVMVLKNELAGSISEMVIAT---GIGGSR-GCGVVK-T  339 (387)
Q Consensus       275 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~v~~~~~~~---~~~~~~-~~~~~~-~  339 (387)
                      .....+|+++|..+.+...|..|..|++..          ...+..+..|..  +-.+..+-   -.+++. .+..++ +
T Consensus       313 gplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~--~GH~~~~~~~t~~pdGk~l~s~~k~s  390 (441)
T d1qnia2         313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQ--PGHNHASLTESRDADGKWLVVLSKFS  390 (441)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC--EEEEEETTTTSTTCCCCEEEEEESCC
T ss_pred             CcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccC--CCCCccccccccCCCCcEEEecCccc
Confidence            345678999999889999999999999852          234445543321  11111111   112322 333333 2


Q ss_pred             CCCCCCCCCcceeeeccceeccccccchhhhceeeeeeccccccc
Q 035621          340 GKAGNDSGGGVFEMYGEKLLDLSIKNTIELENVMTVAEKDRSKAI  384 (387)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (387)
                      .+.....||..  ....+++.++-++.+-+.+..+.+|+.....|
T Consensus       391 ~dr~~~~g~~~--~~~~q~~~i~~~~~~~~~~~~~~~eph~~~~~  433 (441)
T d1qnia2         391 KDRFLPVGPLH--PENDQLIDISGEEMKLVHDGPTYAEPHDCILV  433 (441)
T ss_dssp             GGGSCCCSSSC--CEEEEEEECSSSSCEEEEEEEESSCCCCEEEE
T ss_pred             cccCcCCCCCC--CccceeEEecCCeEEEEecCCCCCCCcceEEE
Confidence            22233333333  24456777776666666666666666554443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.57  E-value=9.9e-16  Score=130.99  Aligned_cols=269  Identities=7%  Similarity=-0.020  Sum_probs=175.7

Q ss_pred             ccCCCcEEEe-eCCCCcEEEEeCCCCceeEecc-CCCCCceeEEEcCccc--eeeeccccCCCC----------------
Q 035621            4 HLPCNEVILT-SSPEGPITAYNPSSGAILAHFS-GSRSPRRGLTFAGKPF--IAASHISPTTGS----------------   63 (387)
Q Consensus         4 ~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~~~~~~~~~d----------------   63 (387)
                      ++|||++|++ ...++.|.++|+.+++....+. .+...+..++|+|++.  +...    .+.+                
T Consensus        79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~----~~~~~v~~~~dg~~~~~~~~  154 (441)
T d1qnia2          79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFC----NAEFVIPQPNDGTDFSLDNS  154 (441)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEE----EECSCEESSCSSSCCCGGGE
T ss_pred             ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEe----ccCCcccccCcccccccccc
Confidence            5789998854 5678899999999998877664 3456789999998554  2221    1111                


Q ss_pred             -CeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC-cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE
Q 035621           64 -GSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG-NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI  141 (387)
Q Consensus        64 -~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  141 (387)
                       ..+..+|..+.+...++........++++|+|+++++.+.+. .+..++..+.+....+... .....+++.|+|+++.
T Consensus       155 ~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~~~~dGk~~~  233 (441)
T d1qnia2         155 YTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKT  233 (441)
T ss_dssp             EEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHHHHHTTCCBC
T ss_pred             cceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC-CccceEEEecCCCEEE
Confidence             234567888888877777777889999999999999887653 3333443333332222111 1112344678888766


Q ss_pred             EEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCce-EEEEeCCCcEEEEeCCCCcE-----
Q 035621          142 SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSI-IISCSMDCTCKFWRLLNGTH-----  215 (387)
Q Consensus       142 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~-----  215 (387)
                      .+ .++.+.+++.            .....+..+..... ...+.++|++  ++ ++++..+++|.+||+.+...     
T Consensus       234 v~-~~~v~vvd~~------------~~~~v~~~IPvgks-PhGv~vSPDG--kyl~~~~~~~~tvsv~d~~k~~~~~~~~  297 (441)
T d1qnia2         234 IG-DSKVPVVDGR------------GESEFTRYIPVPKN-PHGLNTSPDG--KYFIANGKLSPTVSVIAIDKLDDLFEDK  297 (441)
T ss_dssp             CT-TCCCCEEECS------------SSCSSEEEECCBSS-CCCEEECTTS--CEEEEECTTSSBEEEEEGGGHHHHTTTS
T ss_pred             eC-CCCcEEEEcc------------cCCceEEEEeCCCC-ccCceECCCC--CEEEEeCCcCCcEEEEEeehhhhHhhcc
Confidence            54 4567777765            34445556655544 4578889986  55 56677899999999865321     


Q ss_pred             -------EEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc-cccceeE-----eecccccccEEEEEEe
Q 035621          216 -------LSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM-HKGQELV-----TLANRHDGVVVSVMMM  282 (387)
Q Consensus       216 -------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~-----~~~~~~~~~v~~~~~s  282 (387)
                             .......-.....+|.++|..+.+...|..|..|++........ .....+.     ....+|...+.+.+++
T Consensus       298 ~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~  377 (441)
T d1qnia2         298 IELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRD  377 (441)
T ss_dssp             SCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTT
T ss_pred             CCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccC
Confidence                   11111233456678999998888888899999999864211100 0011111     1224788888888999


Q ss_pred             cCCCEEEEEeC
Q 035621          283 NEGKNLVSAAE  293 (387)
Q Consensus       283 ~~~~~l~s~~~  293 (387)
                      |||++|++++.
T Consensus       378 pdGk~l~s~~k  388 (441)
T d1qnia2         378 ADGKWLVVLSK  388 (441)
T ss_dssp             CCCCEEEEEES
T ss_pred             CCCcEEEecCc
Confidence            99999999943

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=6e-14  Score=120.24  Aligned_cols=244  Identities=7%  Similarity=-0.043  Sum_probs=150.1

Q ss_pred             ccccCCCcEEEee----------CCCCcEEEEeCCCCceeEeccCCCC-------CceeEEEcCccceeeeccccCCCCC
Q 035621            2 LHHLPCNEVILTS----------SPEGPITAYNPSSGAILAHFSGSRS-------PRRGLTFAGKPFIAASHISPTTGSG   64 (387)
Q Consensus         2 l~~s~~~~~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~d~   64 (387)
                      ++|+|||+.|+++          +.|+.|.+||..+++.+..+..+..       ....++|+|++..+..   +...++
T Consensus        70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~v---a~~~~~  146 (368)
T d1mdah_          70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLF---FLFGSS  146 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEE---EECSSS
T ss_pred             ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEE---EeCCCC
Confidence            4789999988875          3477899999999998887754322       2457899997654432   134679


Q ss_pred             eEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEE------ccCCCCCeEEEEEcCCCC
Q 035621           65 SVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRS------FSAHDKPVSCLKISPDGS  138 (387)
Q Consensus        65 ~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~~~~~v~~~~~~~~~~  138 (387)
                      .+.+||+.+++....+..+.....  +......++..+.||.+.++++........      +..+...+....+.+++.
T Consensus       147 ~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  224 (368)
T d1mdah_         147 AAAGLSVPGASDDQLTKSASCFHI--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGM  224 (368)
T ss_dssp             CEEEEEETTTEEEEEEECSSCCCC--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             eEEEEECCCCcEeEEeeccCcceE--ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcE
Confidence            999999999988877765433211  111234556667788888887755432211      223444556677888876


Q ss_pred             EEEEEeCCCcEEEEeCCcccccC--CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC--------CcEEEE
Q 035621          139 LLISGGDDGVIATVPIFQLVDEH--TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD--------CTCKFW  208 (387)
Q Consensus       139 ~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d--------~~i~iw  208 (387)
                      .+.+.+  +.++++++.......  .............+  .......++++++. +.+++....+        ..|.+|
T Consensus       225 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~a~~~~~-~~~~v~~~~~~~~~~~~~~~v~v~  299 (368)
T d1mdah_         225 LVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNF--RSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSV  299 (368)
T ss_dssp             EEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTE--EECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEE
T ss_pred             EEEecC--CCEEEEeecCCceEEEeecccccceeeeeee--cCCCceeEEEcCCC-CEEEEEecCCCceeecCCceEEEE
Confidence            655443  445555552210000  00000000000001  11122346667765 2233332222        359999


Q ss_pred             eCCCCcEEEEEecCCceeEEEeCCCCCe--EEEEccCCcEEEEeccccc
Q 035621          209 RLLNGTHLSTVTFPCAIMGLALDPTETD--FFAAGSDGLIYKGLLKYQS  255 (387)
Q Consensus       209 d~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~i~d~~~~~  255 (387)
                      |..+++.+..+.....+..++|+|||+.  ++++..++.|++||..+++
T Consensus       300 D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         300 TASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             ESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             ECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            9999999998888888999999999974  3455678999999998843

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.37  E-value=4.1e-11  Score=105.80  Aligned_cols=107  Identities=9%  Similarity=0.021  Sum_probs=84.5

Q ss_pred             eeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC------CCCCeeeEEeccCCCEEEEecC---------CCc
Q 035621           42 RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP------VPEPVAPLATTADGSYLFTGGL---------SGN  106 (387)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~---------dg~  106 (387)
                      ..+.|.++..+..      ..++.+.+||+.+++....+.      +...+.+..|+|||++|+.++.         ++.
T Consensus        20 ~~~~W~~d~~~~~------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~   93 (470)
T d2bgra1          20 YSLRWISDHEYLY------KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (470)
T ss_dssp             CCCEECSSSEEEE------ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cCCEeCCCCEEEE------EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCce
Confidence            4577888765543      257889999999998654433      3467999999999999998743         567


Q ss_pred             EEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCc
Q 035621          107 VYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQ  156 (387)
Q Consensus       107 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  156 (387)
                      +.+||+.+++. ..+..+...+..+.|+|||+.++.. .++.+++|+...
T Consensus        94 ~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~  141 (470)
T d2bgra1          94 YDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN  141 (470)
T ss_dssp             EEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT
T ss_pred             EEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCC
Confidence            89999988774 5577888999999999999999986 567899998843

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=4.2e-10  Score=90.71  Aligned_cols=232  Identities=10%  Similarity=-0.000  Sum_probs=146.2

Q ss_pred             ccccCCCcEEEee-CCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccccc
Q 035621            2 LHHLPCNEVILTS-SPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNI   80 (387)
Q Consensus         2 l~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~   80 (387)
                      ++++++|++.++. +..+.+..++............-......+++++++.+..+    ....+.+++++-.+.......
T Consensus        19 vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~----d~~~~~i~~~~~~~~~~~~~~   94 (260)
T d1rwia_          19 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVT----DFNNRVVTLAAGSNNQTVLPF   94 (260)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEE----ETTTEEEEECTTCSCCEECCC
T ss_pred             EEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEe----eeeeceeeeeeeccceeeeee
Confidence            4678888866654 45567777765433322222222234678899886544332    455566666655444444444


Q ss_pred             CCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCccccc
Q 035621           81 PVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDE  160 (387)
Q Consensus        81 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  160 (387)
                      ..-..+.++++.++++++++-..+..+..++...................++++|+++++++...++.|..++..     
T Consensus        95 ~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~-----  169 (260)
T d1rwia_          95 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE-----  169 (260)
T ss_dssp             CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTT-----
T ss_pred             eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccc-----
Confidence            444668899999999988877777778888865544332222223456789999999988888888889999872     


Q ss_pred             CCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceeEEEeCCCCCeEE
Q 035621          161 HTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT--FPCAIMGLALDPTETDFF  238 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~  238 (387)
                             .................+++.++  ++++++....+.|..++..... ...+.  .-.....++++++|+.++
T Consensus       170 -------~~~~~~~~~~~~~~p~gi~~d~~--g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~v  239 (260)
T d1rwia_         170 -------SNNQVVLPFTDITAPWGIAVDEA--GTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYV  239 (260)
T ss_dssp             -------TCCEEECCCSSCCSEEEEEECTT--CCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEE
T ss_pred             -------cceeeeeeccccCCCccceeeee--eeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEE
Confidence                   11111111233345677888766  4788888778888888765443 22232  224678999999998777


Q ss_pred             EEccCCcEEEEecc
Q 035621          239 AAGSDGLIYKGLLK  252 (387)
Q Consensus       239 ~~~~dg~i~i~d~~  252 (387)
                      +-..++.|+.++..
T Consensus       240 ad~~~~rI~~i~~~  253 (260)
T d1rwia_         240 ADRGNDRVVKLTSL  253 (260)
T ss_dssp             EEGGGTEEEEECCC
T ss_pred             EECCCCEEEEEeCC
Confidence            76777777766544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.36  E-value=5.6e-10  Score=92.16  Aligned_cols=237  Identities=15%  Similarity=0.145  Sum_probs=157.3

Q ss_pred             cCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccc
Q 035621           80 IPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVD  159 (387)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  159 (387)
                      +.....+..+++.|||+++++...+++|..++.. ++. ..+......+.+++|+++|+++++...++.+..++...   
T Consensus        24 ~p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~---   98 (302)
T d2p4oa1          24 FPVNTFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK---   98 (302)
T ss_dssp             ECTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC---
T ss_pred             CCCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecc---
Confidence            3334457789999999999999899999999854 443 33444567899999999999999888888888887622   


Q ss_pred             cCCCCCCCCccceEee--eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec-----------CCcee
Q 035621          160 EHTDDKNPDDLMLQKF--VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF-----------PCAIM  226 (387)
Q Consensus       160 ~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----------~~~v~  226 (387)
                              .......+  .........+++.++  ++++++.+.++.+..+|...+........           .....
T Consensus        99 --------~~~~~~~~~~~~~~~~~n~i~~~~~--g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  168 (302)
T d2p4oa1          99 --------SDGTVETLLTLPDAIFLNGITPLSD--TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN  168 (302)
T ss_dssp             --------TTSCEEEEEECTTCSCEEEEEESSS--SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred             --------cccceeeccccCCccccceeEEccC--CCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccc
Confidence                    11111111  123455778887776  48888888889999999887754433221           12345


Q ss_pred             EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCcc
Q 035621          227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQ  306 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  306 (387)
                      .+.+.. +..+++.+..+.|+.++.........   ....    ........++++++|+++++...++.|..++... +
T Consensus       169 gi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~---~~~~----~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~  239 (302)
T d2p4oa1         169 GLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGE---PEIF----VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-S  239 (302)
T ss_dssp             EEEEET-TEEEEEETTTTEEEEEEBCTTSCBCC---CEEE----EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-C
T ss_pred             cccccC-CceeeecCCCCeEEeccccccccccc---cccc----cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-C
Confidence            566543 33455556688898888765332111   1111    1233456799999999888888899999998764 4


Q ss_pred             EEEEeecc-cCCCceeEEEEecCCCceeeEEEecC
Q 035621          307 VVMVLKNE-LAGSISEMVIATGIGGSRGCGVVKTG  340 (387)
Q Consensus       307 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~  340 (387)
                      ........ ....+++++|....+|...+++...+
T Consensus       240 ~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         240 TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            33332221 12357889998777777777776554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.34  E-value=1.4e-09  Score=92.10  Aligned_cols=278  Identities=12%  Similarity=0.079  Sum_probs=157.1

Q ss_pred             EEEeeC--CCCcEEEE--eCCCCcee--Eec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC-cccc--
Q 035621           10 VILTSS--PEGPITAY--NPSSGAIL--AHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST-PLHN--   79 (387)
Q Consensus        10 ~l~~~~--~dg~i~iw--d~~~~~~~--~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~-~~~~--   79 (387)
                      .|++|+  ..+.|+++  |.++++..  ... .....++.-|++++++..+..     ...+.+..|.+.... ....  
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~-----~~~~~~~~~~i~~~~~~~~~~~   78 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYG-----AAMKKWSSFAVKSPTEIVHEAS   78 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEE-----EEBTEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEE-----EeCCcEEEEEEeCCCCeEEEee
Confidence            355564  35567665  44555432  221 224445677999997654432     234677788775432 2221  


Q ss_pred             cCCCCCeeeEEeccCCCEE--EEec-CCCcEEEEeCCC-C------------ce---eEEc-cCCCCCeEEEEEcCCCCE
Q 035621           80 IPVPEPVAPLATTADGSYL--FTGG-LSGNVYAISVPK-G------------DI---LRSF-SAHDKPVSCLKISPDGSL  139 (387)
Q Consensus        80 ~~~~~~v~~~~~~~~~~~l--~~~~-~dg~i~i~d~~~-~------------~~---~~~~-~~~~~~v~~~~~~~~~~~  139 (387)
                      .........++++++++.+  ++.. ..+.+..+.+.. +            +.   .... ......+.++.|+|+|++
T Consensus        79 ~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~  158 (365)
T d1jofa_          79 HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY  158 (365)
T ss_dssp             EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred             ecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCE
Confidence            1234556788899998844  3332 235555544321 1            11   0000 112234789999999998


Q ss_pred             EEEEeC-CCcEEEEeCCcccccCCCCCCCCccceEee--eccCCCeEEEEEeeCCCCceE-EEEeCCCcEEEEeCCCCcE
Q 035621          140 LISGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKF--VAHNDSVTAITCCIGSFNSII-ISCSMDCTCKFWRLLNGTH  215 (387)
Q Consensus       140 l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~  215 (387)
                      +++++. ...|.+|+....         .........  .........++|+|++  +++ ++...+++|.+|++...+.
T Consensus       159 l~v~d~g~d~v~~~~~~~~---------g~~~~~~~~~~~~~g~gPr~i~f~pdg--~~~yv~~e~~~~V~v~~~~~~~~  227 (365)
T d1jofa_         159 LYSADLTANKLWTHRKLAS---------GEVELVGSVDAPDPGDHPRWVAMHPTG--NYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             EEEEETTTTEEEEEEECTT---------SCEEEEEEEECSSTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEEeeCCCCEEEEEEccCC---------CceeeccceeecCCCCceEEEEECCCC--ceEEEeccCCCEEEEEEecCCCc
Confidence            888764 457888876221         011111111  1234567889999986  555 5555689999999876543


Q ss_pred             E--EEE---ec---------------CCceeEEEeCCCCCeEEEEcc-C-----CcEEEEeccccccccccccceeEeec
Q 035621          216 L--STV---TF---------------PCAIMGLALDPTETDFFAAGS-D-----GLIYKGLLKYQSRQQMHKGQELVTLA  269 (387)
Q Consensus       216 ~--~~~---~~---------------~~~v~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~  269 (387)
                      .  ...   ..               ......+.++|+|++|+++.. +     +.|..|++........   .......
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~---~~~~~~~  304 (365)
T d1jofa_         228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK---QLFLSPT  304 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE---EEEEEEC
T ss_pred             eEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceee---EeEeeEE
Confidence            2  221   10               113567899999999998754 2     2366666654221110   0111111


Q ss_pred             ccccccEEEEEEec-CCCEEEEE-eCCCcEEEEECCCcc
Q 035621          270 NRHDGVVVSVMMMN-EGKNLVSA-AEDGSVYIWEIEKRQ  306 (387)
Q Consensus       270 ~~~~~~v~~~~~s~-~~~~l~s~-~~dg~i~iwd~~~~~  306 (387)
                      .........++++| +|++|+++ ..++.|.+|+++...
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            12334567899998 78977665 567899999876553

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2.6e-09  Score=86.47  Aligned_cols=238  Identities=11%  Similarity=0.059  Sum_probs=145.7

Q ss_pred             eEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC---cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE
Q 035621           65 SVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG---NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI  141 (387)
Q Consensus        65 ~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  141 (387)
                      .|.+-|...............+...+|||||+.||......   .+.+.+...+... .+..+........|+|+++.++
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeee
Confidence            68888887666666666778889999999999998765333   5777777665543 4445678888999999999887


Q ss_pred             EEeC-CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC--cEEEEeCCCCcEEEE
Q 035621          142 SGGD-DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC--TCKFWRLLNGTHLST  218 (387)
Q Consensus       142 ~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~  218 (387)
                      .... ++...++...           ....................+++.. ...+++...++  .|...++..+.....
T Consensus        99 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~  166 (269)
T d2hqsa1          99 FALSKTGSLNLYVMD-----------LASGQIRQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQRI  166 (269)
T ss_dssp             EEECTTSSCEEEEEE-----------TTTCCEEECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCEEC
T ss_pred             EeeecCCccceeecc-----------cccccceeeeecccccccccccccc-ccceecccccCCceEeeeecccccceee
Confidence            6653 3332232221           0111222222233333444455554 33445554555  455666666654444


Q ss_pred             EecCCceeEEEeCCCCCeEEEEccC-CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC---C
Q 035621          219 VTFPCAIMGLALDPTETDFFAAGSD-GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE---D  294 (387)
Q Consensus       219 ~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d  294 (387)
                      ...........|+|+++.++..+.+ +...+|.......       . .... .+........|+|||+.|+-.+.   .
T Consensus       167 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~-------~-~~~~-~~~~~~~~p~~SPDG~~i~f~s~~~~~  237 (269)
T d2hqsa1         167 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-------G-VQVL-SSTFLDETPSLAPNGTMVIYSSSQGMG  237 (269)
T ss_dssp             CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC-------C-EEEC-CCSSSCEEEEECTTSSEEEEEEEETTE
T ss_pred             ecccccccccccccccceeEEEeecCCceeeeEeecccc-------c-ceEe-ecCccccceEECCCCCEEEEEEcCCCC
Confidence            4456667788999999998887664 4445544443211       1 1111 24455677899999998875443   3


Q ss_pred             CcEEEEECCCccEEEEeecccCCCceeEEEEe
Q 035621          295 GSVYIWEIEKRQVVMVLKNELAGSISEMVIAT  326 (387)
Q Consensus       295 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  326 (387)
                      ..|+++++..++..+ +... .+.+....++|
T Consensus       238 ~~l~~~~~dg~~~~~-lt~~-~g~~~~p~WSP  267 (269)
T d2hqsa1         238 SVLNLVSTDGRFKAR-LPAT-DGQVKFPAWSP  267 (269)
T ss_dssp             EEEEEEETTSCCEEE-CCCS-SSEEEEEEECC
T ss_pred             cEEEEEECCCCCEEE-EeCC-CCcEEeEEeCC
Confidence            478999998876654 3332 44555555554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.31  E-value=2.7e-09  Score=86.84  Aligned_cols=230  Identities=11%  Similarity=0.138  Sum_probs=157.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCC------CCceeEEEcCccceeeeccccCCCCCeEEEEEccCCC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSR------SPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSST   75 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~   75 (387)
                      ++++|+|+++++-..++.|++||. +|+.+..+....      .....+++.++...  ..++..+.++.|..++. .++
T Consensus        28 vavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~i~~~~~-~g~  103 (279)
T d1q7fa_          28 VAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQIYNQ-YGQ  103 (279)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEEEECT-TSC
T ss_pred             EEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccc--cceeccCCccccccccc-ccc
Confidence            567899998888777788999996 477776663211      11334444432110  01112345567777765 455


Q ss_pred             cccccC--CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEc--cCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 035621           76 PLHNIP--VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSF--SAHDKPVSCLKISPDGSLLISGGDDGVIAT  151 (387)
Q Consensus        76 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  151 (387)
                      ....+.  .......+++.++|.++++....+.+.+++. +++.+..+  ..+......+++.++++.+++....+.|++
T Consensus       104 ~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~  182 (279)
T d1q7fa_         104 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV  182 (279)
T ss_dssp             EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEE
T ss_pred             ceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceee
Confidence            554443  2356788999999998888888888999985 56666665  345667889999999998888888899999


Q ss_pred             EeCCcccccCCCCCCCCccceEeee--ccCCCeEEEEEeeCCCCceEEEEeC-CCcEEEEeCCCCcEEEEEec---CCce
Q 035621          152 VPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSVTAITCCIGSFNSIIISCSM-DCTCKFWRLLNGTHLSTVTF---PCAI  225 (387)
Q Consensus       152 wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~---~~~v  225 (387)
                      ||.             .+..+..+.  +.......|++.+++  +++++-.. ++.|.+|+ .+++.+..+..   ....
T Consensus       183 ~d~-------------~G~~~~~~g~~g~~~~P~giavD~~G--~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p  246 (279)
T d1q7fa_         183 FNY-------------EGQYLRQIGGEGITNYPIGVGINSNG--EILIADNHNNFNLTIFT-QDGQLISALESKVKHAQC  246 (279)
T ss_dssp             EET-------------TCCEEEEESCTTTSCSEEEEEECTTC--CEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCE
T ss_pred             eec-------------CCceeeeecccccccCCcccccccCC--eEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCE
Confidence            987             333444442  234456788887774  77766543 45799998 56888777753   2468


Q ss_pred             eEEEeCCCCCeEEEEccCCcEEEEeccc
Q 035621          226 MGLALDPTETDFFAAGSDGLIYKGLLKY  253 (387)
Q Consensus       226 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~  253 (387)
                      ..+++.|+|.+ ++++.+..|++|....
T Consensus       247 ~~vav~~dG~l-~V~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         247 FDVALMDDGSV-VLASKDYRLYIYRYVQ  273 (279)
T ss_dssp             EEEEEETTTEE-EEEETTTEEEEEECSC
T ss_pred             eEEEEeCCCcE-EEEeCCCeEEEEEeee
Confidence            89999999865 4556788999998775

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.28  E-value=1.6e-09  Score=89.42  Aligned_cols=250  Identities=12%  Similarity=0.026  Sum_probs=155.4

Q ss_pred             CCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCCC
Q 035621           26 SSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLSG  105 (387)
Q Consensus        26 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  105 (387)
                      ...+.+..+.... .+..+++.|++.+..+    ...+++|..|+.. ++..........+.+++|.++|+++++...++
T Consensus        16 ~~~~v~~~~p~~~-~~e~iAv~pdG~l~vt----~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~   89 (302)
T d2p4oa1          16 APAKIITSFPVNT-FLENLASAPDGTIFVT----NHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNAD   89 (302)
T ss_dssp             CCEEEEEEECTTC-CEEEEEECTTSCEEEE----ETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTT
T ss_pred             CcccEEEECCCCC-CcCCEEECCCCCEEEE----eCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCc
Confidence            3445555554322 4788999997665443    5678888888854 44444455667899999999999988888888


Q ss_pred             cEEEEeCCCCce-eEEc--cCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCe
Q 035621          106 NVYAISVPKGDI-LRSF--SAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSV  182 (387)
Q Consensus       106 ~i~i~d~~~~~~-~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  182 (387)
                      .+..++...... ...+  .........+++.++++++++-+.++.+..++...........  ................
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  167 (302)
T d2p4oa1          90 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLE--HPMLARSNSESVFPAA  167 (302)
T ss_dssp             SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEE--CGGGSCSSTTCCSCSE
T ss_pred             eEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEec--CCccceeeccCccccc
Confidence            888887644321 1111  1234568899999999988888888888888763210000000  0000000001112234


Q ss_pred             EEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE---EEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccc
Q 035621          183 TAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL---STVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQM  259 (387)
Q Consensus       183 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  259 (387)
                      ..+.+..   +.++++.+..+.|..++.......   ..+........+++.++|+++++...++.|..++....     
T Consensus       168 ngi~~~~---~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~-----  239 (302)
T d2p4oa1         168 NGLKRFG---NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-----  239 (302)
T ss_dssp             EEEEEET---TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-----
T ss_pred             ccccccC---CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC-----
Confidence            5555542   367777778889998887654322   22234455678999999998877778899998876531     


Q ss_pred             cccceeEeecccccccEEEEEE---ecCCCEEEEEeCC
Q 035621          260 HKGQELVTLANRHDGVVVSVMM---MNEGKNLVSAAED  294 (387)
Q Consensus       260 ~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~s~~~d  294 (387)
                         ..........-..+++++|   ++|++.|..++..
T Consensus       240 ---~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         240 ---TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             ---EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ---EEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence               1111111123345899999   6788877665443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.27  E-value=6.4e-09  Score=83.60  Aligned_cols=236  Identities=10%  Similarity=0.017  Sum_probs=147.4

Q ss_pred             CceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-ccCCCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCcee
Q 035621           40 PRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NIPVPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDIL  118 (387)
Q Consensus        40 ~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  118 (387)
                      ...++++.+++.+.   ++..+..+.+..++........ ..........++++++++++++...++.+++++-.+...+
T Consensus        15 ~P~~vavd~dG~i~---v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          15 SPSGVAVDSAGNVY---VTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CEEEEEECTTCCEE---EEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEE
T ss_pred             CCCEEEEcCCCCEE---EEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceee
Confidence            45788888865432   1124556677766654332221 2222345778999999998877777777777765555544


Q ss_pred             EEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEE
Q 035621          119 RSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIIS  198 (387)
Q Consensus       119 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s  198 (387)
                      .... ......++++.++++++++-..+..+..++...            ................+++.++  ++++++
T Consensus        92 ~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~------------~~~~~~~~~~~~~p~~i~~~~~--g~~~v~  156 (260)
T d1rwia_          92 LPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS------------KTQTVLPFTGLNDPDGVAVDNS--GNVYVT  156 (260)
T ss_dssp             CCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTC------------SSCEECCCCSCCSCCEEEECTT--CCEEEE
T ss_pred             eeee-eeeecccccccccceeEeecccccccccccccc------------ceeeeeeecccCCcceeeecCC--CCEeee
Confidence            3333 235678999999999887766667777776522            1111111111234467888776  478888


Q ss_pred             EeCCCcEEEEeCCCCcEEEEE-ecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecccccccEE
Q 035621          199 CSMDCTCKFWRLLNGTHLSTV-TFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVV  277 (387)
Q Consensus       199 ~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  277 (387)
                      ...++.|..+|.......... ..-.....+++.++|+++++....+.|..++......         .......-....
T Consensus       157 ~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~---------~~~~~~~~~~P~  227 (260)
T d1rwia_         157 DTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS---------TVLPFTGLNTPL  227 (260)
T ss_dssp             EGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC---------EECCCCSCCCEE
T ss_pred             ccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE---------EEEccCCCCCeE
Confidence            888889999997755433221 2345678999999998888887888888887654211         111112234578


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEEC
Q 035621          278 SVMMMNEGKNLVSAAEDGSVYIWEI  302 (387)
Q Consensus       278 ~~~~s~~~~~l~s~~~dg~i~iwd~  302 (387)
                      .|+++++|.++++-..++.|+.++.
T Consensus       228 ~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         228 AVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             EEEEeCCCCEEEEECCCCEEEEEeC
Confidence            9999999988877666676665543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.26  E-value=2.4e-08  Score=82.73  Aligned_cols=227  Identities=14%  Similarity=0.104  Sum_probs=142.4

Q ss_pred             CeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCccccc
Q 035621           85 PVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD----GVIATVPIFQLVDE  160 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~  160 (387)
                      .+..++|.++|++.++-..++.|..|+..+++....+.........++++++|+++++...+    +.+...+.      
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~------  114 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE------  114 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT------
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcC------
Confidence            35688999999977777788999999987776666555556678999999999877765432    23333333      


Q ss_pred             CCCCCCCCccceEeeecc---CCCeEEEEEeeCCCCceEEEEeC------CCcEEEEeCCCCcEEEEEecCCceeEEEeC
Q 035621          161 HTDDKNPDDLMLQKFVAH---NDSVTAITCCIGSFNSIIISCSM------DCTCKFWRLLNGTHLSTVTFPCAIMGLALD  231 (387)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~  231 (387)
                             ....+.....+   ....+.+++.+++  ++.++...      .+.+..++............-...+.++|+
T Consensus       115 -------~~~~~~~~~~~~~~~~~~nd~~~d~~G--~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s  185 (319)
T d2dg1a1         115 -------NGDNLQDIIEDLSTAYCIDDMVFDSKG--GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALS  185 (319)
T ss_dssp             -------TSCSCEEEECSSSSCCCEEEEEECTTS--CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEEC
T ss_pred             -------CCceeeeeccCCCcccCCcceeEEecc--ceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeec
Confidence                   11111221111   2346677777764  66665432      123555554433322222333456889999


Q ss_pred             CCCCeEEEE-ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEE
Q 035621          232 PTETDFFAA-GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMV  310 (387)
Q Consensus       232 ~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  310 (387)
                      |+++.|+++ +..+.|+.|++.................. ........+++.++|++.++....+.|.+||. .|+.+..
T Consensus       186 ~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~-~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~  263 (319)
T d2dg1a1         186 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF-TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQ  263 (319)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC-CSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEE
T ss_pred             cccceEEEecccCCceEEEEEcCCCceeccccceeeecc-CCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEE
Confidence            999876555 56889999998753221111111111111 22234678999999998888888999999995 6888888


Q ss_pred             eeccc-----CCCceeEEEEecC
Q 035621          311 LKNEL-----AGSISEMVIATGI  328 (387)
Q Consensus       311 ~~~~~-----~~~v~~~~~~~~~  328 (387)
                      +....     ...+++++|.++.
T Consensus       264 i~~P~~~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         264 ILIPGRDEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             EECTTGGGTCSCBCCEEEECTTS
T ss_pred             EeCCCcCCCcCceeeeEEEeCCC
Confidence            76432     1246677776544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.23  E-value=1.3e-08  Score=84.34  Aligned_cols=233  Identities=11%  Similarity=0.108  Sum_probs=144.4

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      ++|.++|++.++-...+.|+.|+..+++....+.........+++.+++.+.......-...+.+...+...........
T Consensus        45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~  124 (319)
T d2dg1a1          45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE  124 (319)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred             CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeecc
Confidence            36889999888888889999999887766665555556688999998765443211101123345555554444433332


Q ss_pred             C---CCCeeeEEeccCCCEEEEecC------CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEE-EeCCCcEEE
Q 035621           82 V---PEPVAPLATTADGSYLFTGGL------SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLIS-GGDDGVIAT  151 (387)
Q Consensus        82 ~---~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i  151 (387)
                      .   ......+++.++|++.++...      .+.+..++...+. +..+...-...+.++|+|+++.|+. -+..+.|..
T Consensus       125 ~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~  203 (319)
T d2dg1a1         125 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHR  203 (319)
T ss_dssp             SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             CCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecccCCceEE
Confidence            2   245778999999986665432      2346666654333 3333222345688999999986644 456788999


Q ss_pred             EeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCC-------c
Q 035621          152 VPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPC-------A  224 (387)
Q Consensus       152 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------~  224 (387)
                      |++.......    ...................+++..+  +++.++....+.|.+||. +++.+..+..+.       .
T Consensus       204 ~d~~~~g~~~----~~~~~~~~~~~~~~~~PdGl~vD~~--G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~  276 (319)
T d2dg1a1         204 IALEDDGVTI----QPFGATIPYYFTGHEGPDSCCIDSD--DNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLR  276 (319)
T ss_dssp             EEECTTSSSE----EEEEEEEEEECCSSSEEEEEEEBTT--CCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCB
T ss_pred             EEEcCCCcee----ccccceeeeccCCccceeeeeEcCC--CCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCce
Confidence            9873210000    0000000111111123456777665  588888888999999994 789998887543       4


Q ss_pred             eeEEEeCCCCCeEEEEcc
Q 035621          225 IMGLALDPTETDFFAAGS  242 (387)
Q Consensus       225 v~~~~~~~~~~~l~~~~~  242 (387)
                      +++++|.++...+++...
T Consensus       277 ~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         277 STHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CCEEEECTTSCEEEEEEE
T ss_pred             eeeEEEeCCCCEEEEEcC
Confidence            789999998877776654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=5.1e-08  Score=78.56  Aligned_cols=238  Identities=13%  Similarity=0.064  Sum_probs=143.0

Q ss_pred             cEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEE
Q 035621           19 PITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYL   98 (387)
Q Consensus        19 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l   98 (387)
                      .|+|.|.. |.....+..+...+...+|+|++..++- .........+.+.+...+.......+........|+|+|+.+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAY-VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEE-EECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEE-EEeeccCcceeeeecccCceeEEeeeecccccceecCCCCee
Confidence            58888864 5555555556777889999998766542 112334456777777777776667777888999999999988


Q ss_pred             EEecC-CCc--EEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCcccccCCCCCCCCccceEe
Q 035621           99 FTGGL-SGN--VYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI-SGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQK  174 (387)
Q Consensus        99 ~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  174 (387)
                      +.... ++.  +..+........ .............+++++..++ +...++...+|....           .......
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~-----------~~~~~~~  165 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI-----------NGGAPQR  165 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET-----------TSSCCEE
T ss_pred             eEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeec-----------cccccee
Confidence            87553 332  333333333332 2333444555667777776544 444555444443310           1122233


Q ss_pred             eeccCCCeEEEEEeeCCCCceEEEEeC-CCc--EEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEcc---CCcEEE
Q 035621          175 FVAHNDSVTAITCCIGSFNSIIISCSM-DCT--CKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS---DGLIYK  248 (387)
Q Consensus       175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i  248 (387)
                      ...+........++|++  ..++..+. .+.  +.+.+...+.. .............|+|||+.|+..+.   ...+++
T Consensus       166 ~~~~~~~~~~~~~spdg--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~  242 (269)
T d2hqsa1         166 ITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNL  242 (269)
T ss_dssp             CCCSSSEEEEEEECTTS--SEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred             eeccccccccccccccc--ceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEE
Confidence            34455566677888885  55555444 444  44455544433 33445566778899999999876554   346788


Q ss_pred             EeccccccccccccceeEeecccccccEEEEEEec
Q 035621          249 GLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMN  283 (387)
Q Consensus       249 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  283 (387)
                      +++....         ...+ ....+.+...+|||
T Consensus       243 ~~~dg~~---------~~~l-t~~~g~~~~p~WSP  267 (269)
T d2hqsa1         243 VSTDGRF---------KARL-PATDGQVKFPAWSP  267 (269)
T ss_dssp             EETTSCC---------EEEC-CCSSSEEEEEEECC
T ss_pred             EECCCCC---------EEEE-eCCCCcEEeEEeCC
Confidence            8887522         2222 23456778889998

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.17  E-value=7.1e-08  Score=79.52  Aligned_cols=241  Identities=10%  Similarity=-0.001  Sum_probs=146.3

Q ss_pred             ceeEEEcCccceeeecc---ccCCCCCeEEEEEccCCCcccccCC-----CCCeeeEEeccCCCEEEEecCCCcEEEEeC
Q 035621           41 RRGLTFAGKPFIAASHI---SPTTGSGSVHLYNLWSSTPLHNIPV-----PEPVAPLATTADGSYLFTGGLSGNVYAISV  112 (387)
Q Consensus        41 v~~~~~~~~~~~~~~~~---~~~~~d~~v~vw~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  112 (387)
                      ...++|.+++.+.....   .....+++|..||..++........     ......++|.++++.++++...+.+..++.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            45678888654432210   0112256788888877654332221     123678999999998888877777888897


Q ss_pred             CCCceeEEccCCC----CCeEEEEEcCCCCEEEEEeC---------------CCcEEEEeCCcccccCCCCCCCCccceE
Q 035621          113 PKGDILRSFSAHD----KPVSCLKISPDGSLLISGGD---------------DGVIATVPIFQLVDEHTDDKNPDDLMLQ  173 (387)
Q Consensus       113 ~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~  173 (387)
                      ..+..........    ...+.+++.++|++.++-..               +|.|..++.             ... ..
T Consensus       100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-------------dg~-~~  165 (314)
T d1pjxa_         100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-------------DGQ-MI  165 (314)
T ss_dssp             TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-------------TSC-EE
T ss_pred             CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-------------cCc-ee
Confidence            6543222111111    13578999999987776432               122333322             111 12


Q ss_pred             eeeccCCCeEEEEEeeCCCC---ceEEEEeCCCcEEEEeCCCCcEEEE---E-ec----CCceeEEEeCCCCCeEEEEcc
Q 035621          174 KFVAHNDSVTAITCCIGSFN---SIIISCSMDCTCKFWRLLNGTHLST---V-TF----PCAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       174 ~~~~~~~~i~~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~---~-~~----~~~v~~~~~~~~~~~l~~~~~  242 (387)
                      .+...-..-+.++|+++.++   .++++-+..+.|..||+.....+..   + ..    ......+++.++|+.+++...
T Consensus       166 ~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~  245 (314)
T d1pjxa_         166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC
Confidence            22223334467899887543   2455556788899998764433321   1 11    234678999999998888777


Q ss_pred             CCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCC-EEEEEeCCCcEEEEECCC
Q 035621          243 DGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGK-NLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       243 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~  304 (387)
                      .+.|++||...+..        . .........+++++|.|+++ ++++.+.+|.|...++..
T Consensus       246 ~g~I~~~dp~~g~~--------~-~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         246 SSHIEVFGPDGGQP--------K-MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTEEEEECTTCBSC--------S-EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCEEEEEeCCCCEE--------E-EEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            89999998765321        1 11112345688999999987 556667778888887653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=1.1e-07  Score=76.98  Aligned_cols=235  Identities=13%  Similarity=0.142  Sum_probs=153.9

Q ss_pred             ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC-------CCeeeEEeccCC-CEEEE-ecCCCcEEEEe
Q 035621           41 RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP-------EPVAPLATTADG-SYLFT-GGLSGNVYAIS  111 (387)
Q Consensus        41 v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~-------~~v~~~~~~~~~-~~l~~-~~~dg~i~i~d  111 (387)
                      ...++++++..+...    -...+.|++||.+ ++.+..+...       .....+++.++. ..+++ .+.++.|..++
T Consensus        25 P~gvavd~dg~i~Va----D~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVA----DTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             EEEEEECTTCCEEEE----EGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccEEEEcCCCCEEEE----ECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc
Confidence            578888885543322    3456889999854 5555444311       123455655543 34443 34556788887


Q ss_pred             CCCCceeEEcc-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee--eccCCCeEEEEEe
Q 035621          112 VPKGDILRSFS-AHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF--VAHNDSVTAITCC  188 (387)
Q Consensus       112 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~  188 (387)
                      . .++....+. ........+++.++++++++....+.+.+++.             ....+..+  ..+......+++.
T Consensus       100 ~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-------------~g~~~~~~g~~~~~~~~~~i~~d  165 (279)
T d1q7fa_         100 Q-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-------------NGNVLHKFGCSKHLEFPNGVVVN  165 (279)
T ss_dssp             T-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-------------TSCEEEEEECTTTCSSEEEEEEC
T ss_pred             c-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-------------CCceeecccccccccccceeeec
Confidence            5 566666653 34566789999999998888877788888875             33344443  2344566777776


Q ss_pred             eCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccccccce
Q 035621          189 IGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQMHKGQE  264 (387)
Q Consensus       189 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~  264 (387)
                      ++  ++++++....+.|++||. +++.+.++..   ......+++.++|+.+++-.. ++.|.+|+..-         ..
T Consensus       166 ~~--g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G---------~~  233 (279)
T d1q7fa_         166 DK--QEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---------QL  233 (279)
T ss_dssp             SS--SEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---------CE
T ss_pred             cc--eeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC---------CE
Confidence            65  478888888899999996 5677777753   235789999999987776544 45688887532         11


Q ss_pred             eEeec-ccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccE
Q 035621          265 LVTLA-NRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQV  307 (387)
Q Consensus       265 ~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  307 (387)
                      +..+. .........+++.|+|.+++ ++.++.|++|......+
T Consensus       234 ~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         234 ISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             EEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence            11111 12234578999999997655 45788999999876543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.16  E-value=2.4e-08  Score=84.47  Aligned_cols=238  Identities=8%  Similarity=0.030  Sum_probs=136.7

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCC-CceeEec-cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccC------
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSS-GAILAHF-SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWS------   73 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~------   73 (387)
                      |+|+|++++|+++.. +.+..|.+.. +...... .........+.++++...... +......+.+..+.+..      
T Consensus        45 la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v-~~a~~~~~~v~~~~~~~~~~~~~  122 (365)
T d1jofa_          45 MTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFL-LAAKQPPYAVYANPFYKFAGYGN  122 (365)
T ss_dssp             EEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEE-EECSSTTCCEEEEEESSSCCEEE
T ss_pred             EEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEE-EEecCCCCEEEEeEccCCCCcce
Confidence            679999999888764 5677776653 2222211 112233556677775431110 00122334444443321      


Q ss_pred             ------CCcc-c-----ccCCCCCeeeEEeccCCCEEEEecC-CCcEEEEeCCCC-cee--EEc--cCCCCCeEEEEEcC
Q 035621           74 ------STPL-H-----NIPVPEPVAPLATTADGSYLFTGGL-SGNVYAISVPKG-DIL--RSF--SAHDKPVSCLKISP  135 (387)
Q Consensus        74 ------~~~~-~-----~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~--~~~--~~~~~~v~~~~~~~  135 (387)
                            .... .     ..+....+.++.|+|+|++++++.. ...|.+|+.... ...  ...  .......+.++|+|
T Consensus       123 ~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p  202 (365)
T d1jofa_         123 VFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP  202 (365)
T ss_dssp             EEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT
T ss_pred             eEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC
Confidence                  1110 0     1112234789999999998888754 457888876433 222  111  12346789999999


Q ss_pred             CCCEEEEEe-CCCcEEEEeCCcccccCCCCCCCCccceEee-----------------eccCCCeEEEEEeeCCCCceEE
Q 035621          136 DGSLLISGG-DDGVIATVPIFQLVDEHTDDKNPDDLMLQKF-----------------VAHNDSVTAITCCIGSFNSIII  197 (387)
Q Consensus       136 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~i~~~~~~~~~~~~~l~  197 (387)
                      +++++++.. .++.|.+|++...          ........                 ..+......+.++|++  ++|+
T Consensus       203 dg~~~yv~~e~~~~V~v~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG--~~ly  270 (365)
T d1jofa_         203 TGNYLYALMEAGNRICEYVIDPA----------THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG--KYMF  270 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTT----------TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS--SEEE
T ss_pred             CCceEEEeccCCCEEEEEEecCC----------CceEEEEeeeeccccccccccccccccccCCccceEECCCC--CEEE
Confidence            999876655 5788999988321          11111110                 1122234567888875  7776


Q ss_pred             EEeC-C-----CcEEEEeCCCCcEEEEE---e----cCCceeEEEeCC-CCCeEEEEc-cCCcEEEEeccc
Q 035621          198 SCSM-D-----CTCKFWRLLNGTHLSTV---T----FPCAIMGLALDP-TETDFFAAG-SDGLIYKGLLKY  253 (387)
Q Consensus       198 s~~~-d-----~~i~iwd~~~~~~~~~~---~----~~~~v~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~  253 (387)
                      ++.. +     +.|..|++.....+...   .    .......++++| +|++|+++. .++.|.+|++..
T Consensus       271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            6532 2     34777877654322221   1    234577899998 789888875 478999998865

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.15  E-value=6.5e-08  Score=79.75  Aligned_cols=222  Identities=9%  Similarity=0.045  Sum_probs=138.0

Q ss_pred             CeeeEEeccCCCEEEEecC-------CCcEEEEeCCCCceeEEccC----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 035621           85 PVAPLATTADGSYLFTGGL-------SGNVYAISVPKGDILRSFSA----HDKPVSCLKISPDGSLLISGGDDGVIATVP  153 (387)
Q Consensus        85 ~v~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  153 (387)
                      ....++|.++|++.++...       +|+|..||..+++.......    .......++|.++++.++++...+.|..++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            3456789999987776432       46799999888765433221    123467899999999888887777788887


Q ss_pred             CCcccccCCCCCCCCccceEeeec-c----CCCeEEEEEeeCCCCceEEEEeC---------------CCcEEEEeCCCC
Q 035621          154 IFQLVDEHTDDKNPDDLMLQKFVA-H----NDSVTAITCCIGSFNSIIISCSM---------------DCTCKFWRLLNG  213 (387)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~i~~~~~~~~~~~~~l~s~~~---------------d~~i~iwd~~~~  213 (387)
                      ....             ....... .    -...+.+++.+++  ++.++-..               .|.|..++. .+
T Consensus        99 ~~g~-------------~~~~~~~~~~g~~~~~pndl~~d~~G--~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg  162 (314)
T d1pjxa_          99 TDGT-------------FEEIAKKDSEGRRMQGCNDCAFDYEG--NLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DG  162 (314)
T ss_dssp             TTSC-------------EEECCSBCTTSCBCBCCCEEEECTTS--CEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TS
T ss_pred             CCCc-------------EEEEEeccccccccCCCcEEEECCCC--CEEEecCccCcccccccceeccCCceEEEEee-cC
Confidence            6221             1111100 0    1124667777664  66665322               233444443 34


Q ss_pred             cEEEEEecCCceeEEEeCCCCC----eEE-EEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEE
Q 035621          214 THLSTVTFPCAIMGLALDPTET----DFF-AAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNL  288 (387)
Q Consensus       214 ~~~~~~~~~~~v~~~~~~~~~~----~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  288 (387)
                      +.......-...+.++|+|+++    .|+ +-+..+.|+.|++........  ......+...+......+++.++|+++
T Consensus       163 ~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~--~~~~~~~~~~~~~~pdGiavD~~Gnly  240 (314)
T d1pjxa_         163 QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGHIPGTHEGGADGMDFDEDNNLL  240 (314)
T ss_dssp             CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE--EEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred             ceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce--eeEEEEccccccccceeeEEecCCcEE
Confidence            4433333334567899998765    444 446688999998765322110  011111112233456789999999988


Q ss_pred             EEEeCCCcEEEEECCCccEEEEeecccCCCceeEEEE
Q 035621          289 VSAAEDGSVYIWEIEKRQVVMVLKNELAGSISEMVIA  325 (387)
Q Consensus       289 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~  325 (387)
                      ++....+.|.+||.+.++.+..+.... ..+++++|.
T Consensus       241 Va~~~~g~I~~~dp~~g~~~~~i~~p~-~~~t~~afg  276 (314)
T d1pjxa_         241 VANWGSSHIEVFGPDGGQPKMRIRCPF-EKPSNLHFK  276 (314)
T ss_dssp             EEEETTTEEEEECTTCBSCSEEEECSS-SCEEEEEEC
T ss_pred             EEEcCCCEEEEEeCCCCEEEEEEECCC-CCEEEEEEe
Confidence            888788999999999888877776543 368889984

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4.6e-07  Score=78.82  Aligned_cols=291  Identities=8%  Similarity=0.004  Sum_probs=155.6

Q ss_pred             cccCCCcEEEee---------CCCCcEEEEeCCCCceeEec--cCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEc
Q 035621            3 HHLPCNEVILTS---------SPEGPITAYNPSSGAILAHF--SGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNL   71 (387)
Q Consensus         3 ~~s~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~   71 (387)
                      .||||+++++.+         +..+.+.++|+.++......  ......+....|+|++...+-     ..++.+.+.+.
T Consensus        67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iaf-----v~~~nl~~~~~  141 (465)
T d1xfda1          67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIF-----IFENNIYYCAH  141 (465)
T ss_dssp             EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEE-----EETTEEEEESS
T ss_pred             EECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEE-----EecceEEEEec
Confidence            489999988775         34578899999988754332  233445667899997765542     24667777777


Q ss_pred             cCCCcccccCCC-------------------CCeeeEEeccCCCEEEEecCC-Cc-------------------------
Q 035621           72 WSSTPLHNIPVP-------------------EPVAPLATTADGSYLFTGGLS-GN-------------------------  106 (387)
Q Consensus        72 ~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~l~~~~~d-g~-------------------------  106 (387)
                      ..+...+.....                   ..-..+-|||||++||....| ..                         
T Consensus       142 ~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~  221 (465)
T d1xfda1         142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA  221 (465)
T ss_dssp             SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred             CCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecccc
Confidence            666554433211                   112467799999999986422 22                         


Q ss_pred             --------EEEEeCCCCceeEEc------cCCCCCeEEEEEcCCCCEEEEEeC-C---CcEEEEeCCcccccCCCCCCCC
Q 035621          107 --------VYAISVPKGDILRSF------SAHDKPVSCLKISPDGSLLISGGD-D---GVIATVPIFQLVDEHTDDKNPD  168 (387)
Q Consensus       107 --------i~i~d~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~-d---g~i~iwd~~~~~~~~~~~~~~~  168 (387)
                              +.++|+.++......      .....-+..+.|+|++++++.... +   ..+.++|.            ..
T Consensus       222 G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~------------~t  289 (465)
T d1xfda1         222 GSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA------------TT  289 (465)
T ss_dssp             TSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET------------TT
T ss_pred             CCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcC------------CC
Confidence                    334444333221111      111223677889998876555432 2   24666666            22


Q ss_pred             ccceEeeecc-CCCe----EEEEEeeCCCCceEEEEe-CCC--cEEEEeCC------CCcEEEEEec-CCceeEE-EeCC
Q 035621          169 DLMLQKFVAH-NDSV----TAITCCIGSFNSIIISCS-MDC--TCKFWRLL------NGTHLSTVTF-PCAIMGL-ALDP  232 (387)
Q Consensus       169 ~~~~~~~~~~-~~~i----~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~------~~~~~~~~~~-~~~v~~~-~~~~  232 (387)
                      +.....+..+ ...|    ....|.+++..-.++..+ .+|  .+...++.      .+.....+.. .-.|..+ .|++
T Consensus       290 g~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~  369 (465)
T d1xfda1         290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE  369 (465)
T ss_dssp             CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred             CcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcC
Confidence            2222222211 1111    234566665222233222 232  33333321      2223333332 3345554 6888


Q ss_pred             CCCeEE-EEccC--CcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCC---CcEEEEECCCcc
Q 035621          233 TETDFF-AAGSD--GLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAED---GSVYIWEIEKRQ  306 (387)
Q Consensus       233 ~~~~l~-~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~  306 (387)
                      +++.++ ++..+  +.-++|.+.......    ..+............++.|||++++++..+..   -.+.+++..+++
T Consensus       370 ~~~~vyF~a~~~~p~~~hly~v~l~g~~~----~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~  445 (465)
T d1xfda1         370 KGNKIYFLSTEDLPRRRQLYSANTVGNFN----RQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKK  445 (465)
T ss_dssp             TTTEEEEEESSSCTTCCEEEEECSSTTCC----CBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCC
T ss_pred             CCCEEEEEEeCCCCCceEEEEEECCCCCc----ceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCC
Confidence            877665 44433  233445443211100    01111111234456789999999998854432   468999999999


Q ss_pred             EEEEeecc
Q 035621          307 VVMVLKNE  314 (387)
Q Consensus       307 ~~~~~~~~  314 (387)
                      .+..+...
T Consensus       446 ~~~~Le~N  453 (465)
T d1xfda1         446 KMFDLETN  453 (465)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEcCC
Confidence            99888643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=5.7e-07  Score=78.22  Aligned_cols=231  Identities=13%  Similarity=0.110  Sum_probs=135.1

Q ss_pred             cccCCCcEEEeeCCCCcEEEEeCCCCceeEeccCC---CCCceeEEEcCccceeee-----ccccCCCCCeEEEEEccCC
Q 035621            3 HHLPCNEVILTSSPEGPITAYNPSSGAILAHFSGS---RSPRRGLTFAGKPFIAAS-----HISPTTGSGSVHLYNLWSS   74 (387)
Q Consensus         3 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~-----~~~~~~~d~~v~vw~~~~~   74 (387)
                      .|.+++.++.. ..+|.|.+||+.+++....+..+   .-.+....++|++....-     .+.--+..+...++|+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            57788876654 45789999999888754433322   234677789997654321     1111245688999999988


Q ss_pred             CcccccC---CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc-CCCCC-----------------eEEEEE
Q 035621           75 TPLHNIP---VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS-AHDKP-----------------VSCLKI  133 (387)
Q Consensus        75 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~-----------------v~~~~~  133 (387)
                      .......   ....+....|+|||+.+|... ++.|.+.+..++..++... +....                 -..+-|
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W  180 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW  180 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE
T ss_pred             ceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEE
Confidence            7544332   234566789999999998875 6779999887776554432 11111                 246789


Q ss_pred             cCCCCEEEEEeC-CCcEEEEeCCccccc-----------CCCCCCCCccceEee-----------------eccCCCeEE
Q 035621          134 SPDGSLLISGGD-DGVIATVPIFQLVDE-----------HTDDKNPDDLMLQKF-----------------VAHNDSVTA  184 (387)
Q Consensus       134 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~-----------------~~~~~~i~~  184 (387)
                      ||||++|+.... +..+..+.+......           .....++. ..+..+                 ......+..
T Consensus       181 SPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~-~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~  259 (465)
T d1xfda1         181 SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPS-ISLHVIGLNGPTHDLEMMPPDDPRMREYYITM  259 (465)
T ss_dssp             CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCE-EEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred             CCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCc-eeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence            999999988764 344544443211100           00000000 000000                 011223567


Q ss_pred             EEEeeCCCCceEEEEeC-C---CcEEEEeCCCCcEEEEEe--cCC----ceeEEEeCCCCCeEE
Q 035621          185 ITCCIGSFNSIIISCSM-D---CTCKFWRLLNGTHLSTVT--FPC----AIMGLALDPTETDFF  238 (387)
Q Consensus       185 ~~~~~~~~~~~l~s~~~-d---~~i~iwd~~~~~~~~~~~--~~~----~v~~~~~~~~~~~l~  238 (387)
                      +.|.+++  ++++.... +   ..+.++|..++++...+.  .+.    .-....|+|+|+.++
T Consensus       260 ~~W~~d~--~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~  321 (465)
T d1xfda1         260 VKWATST--KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF  321 (465)
T ss_dssp             EEESSSS--EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred             eEEcCCC--eEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeE
Confidence            7887764  55444322 2   258889999998766554  222    123467899998543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.87  E-value=5.4e-06  Score=67.28  Aligned_cols=225  Identities=10%  Similarity=0.012  Sum_probs=141.2

Q ss_pred             EEeccCCCEE-EEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621           89 LATTADGSYL-FTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP  167 (387)
Q Consensus        89 ~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  167 (387)
                      ..|.+..+.| .+--..+.|..||..+++.. .+. ....+.++++.+++.++++ +.+ .+..+|..            
T Consensus        23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~------------   86 (295)
T d2ghsa1          23 PTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTA------------   86 (295)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETT------------
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecc------------
Confidence            4566644434 44446678999998887643 332 3457889999988876654 454 57888872            


Q ss_pred             CccceE--eeec--cCCCeEEEEEeeCCCCceEEEEeC----CCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEE
Q 035621          168 DDLMLQ--KFVA--HNDSVTAITCCIGSFNSIIISCSM----DCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFA  239 (387)
Q Consensus       168 ~~~~~~--~~~~--~~~~i~~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  239 (387)
                      ......  ....  ....++.+.+.+++  ++.++...    .+.-.+|.+..++.......-...+.++|+++++.++.
T Consensus        87 tg~~~~l~~~~~~~~~~~~nd~~vd~~G--~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~  164 (295)
T d2ghsa1          87 TGVLTLHAELESDLPGNRSNDGRMHPSG--ALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYF  164 (295)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECTTS--CEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred             cceeeEEeeeecCCCcccceeeEECCCC--CEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEE
Confidence            222111  1111  11246677776664  66555432    23456777777765555554456788999999987655


Q ss_pred             E-ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCCC
Q 035621          240 A-GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAGS  318 (387)
Q Consensus       240 ~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  318 (387)
                      + +..+.|+.+++.......... ...........+....+++..+|++.++.-..+.|..|| .+|+++..+..... .
T Consensus       165 ~dt~~~~I~~~~~d~~~~~~~~~-~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~-~  241 (295)
T d2ghsa1         165 VDTKVNRLMRVPLDARTGLPTGK-AEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGK-Q  241 (295)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSC-CEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCS-B
T ss_pred             eecccceeeEeeecccccccccc-eEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCC-c
Confidence            5 558889999876432221111 111122223455688999999999888777788999999 46889988876543 6


Q ss_pred             ceeEEEEecCCCceeeEE
Q 035621          319 ISEMVIATGIGGSRGCGV  336 (387)
Q Consensus       319 v~~~~~~~~~~~~~~~~~  336 (387)
                      +++++|.-  .+...+.+
T Consensus       242 ~T~~~FGG--~d~~~Lyv  257 (295)
T d2ghsa1         242 TTCPAFIG--PDASRLLV  257 (295)
T ss_dssp             EEEEEEES--TTSCEEEE
T ss_pred             eEEEEEeC--CCCCEEEE
Confidence            88888863  34334443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.73  E-value=1.3e-05  Score=64.95  Aligned_cols=222  Identities=11%  Similarity=0.066  Sum_probs=140.5

Q ss_pred             ccC-CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC
Q 035621            4 HLP-CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV   82 (387)
Q Consensus         4 ~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~   82 (387)
                      |++ ++++..+=-..+.|.-||..+++.. .+. ....+.++++.+++.+..     ++. ..+..+|..+++.......
T Consensus        25 wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~v-----a~~-~gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          25 FDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLI-----ASD-DGLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEE-----EET-TEEEEEETTTCCEEEEECS
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEE-----EEe-CccEEeecccceeeEEeee
Confidence            454 4555555556678999998877653 232 234577888877654443     233 4588999988865433221


Q ss_pred             -----CCCeeeEEeccCCCEEEEecC----CCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEE
Q 035621           83 -----PEPVAPLATTADGSYLFTGGL----SGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLI-SGGDDGVIATV  152 (387)
Q Consensus        83 -----~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw  152 (387)
                           ...++.+.+.|+|++.++...    .+.-.+|.+..++....... -...+.++|+++++.++ +-+..+.|..|
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEe
Confidence                 135788999999987665432    23456676666765444432 33567899999998655 44567888888


Q ss_pred             eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecC-CceeEEEeC
Q 035621          153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFP-CAIMGLALD  231 (387)
Q Consensus       153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~~~~~  231 (387)
                      ++......    ...............+....+++..+  +++.++.-..+.|..|| .+++.+..+..+ ..+++++|-
T Consensus       176 ~~d~~~~~----~~~~~~~~~~~~~~~g~pdG~~vD~~--GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         176 PLDARTGL----PTGKAEVFIDSTGIKGGMDGSVCDAE--GHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             EBCTTTCC----BSSCCEEEEECTTSSSEEEEEEECTT--SCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEE
T ss_pred             eecccccc----cccceEEEeccCcccccccceEEcCC--CCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEe
Confidence            87321110    00111122222333445667777554  57777777788999999 578899999876 568999995


Q ss_pred             -CCCCeEEEEc
Q 035621          232 -PTETDFFAAG  241 (387)
Q Consensus       232 -~~~~~l~~~~  241 (387)
                       |+.+.|++.+
T Consensus       249 G~d~~~LyvTt  259 (295)
T d2ghsa1         249 GPDASRLLVTS  259 (295)
T ss_dssp             STTSCEEEEEE
T ss_pred             CCCCCEEEEEE
Confidence             6767666654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.65  E-value=3.7e-05  Score=68.60  Aligned_cols=116  Identities=17%  Similarity=0.153  Sum_probs=69.4

Q ss_pred             CCcEEEeeCCCCcEEEEeC-CCCceeEeccCCCCC-----------ceeEEEcCccceeeeccccCCCCCeEEEEEccCC
Q 035621            7 CNEVILTSSPEGPITAYNP-SSGAILAHFSGSRSP-----------RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS   74 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~   74 (387)
                      +|.++++.+.++.|...|. ++|+.+-++......           -+.+++.++..-....++.++.|+.+.-.|.+++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            4555555565678888886 589988776422111           1345554432111223444778999999999999


Q ss_pred             CcccccCCCCC--eeeEEecc--CCCEEEEecC------CCcEEEEeCCCCceeEEcc
Q 035621           75 TPLHNIPVPEP--VAPLATTA--DGSYLFTGGL------SGNVYAISVPKGDILRSFS  122 (387)
Q Consensus        75 ~~~~~~~~~~~--v~~~~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~  122 (387)
                      +.+..+.....  -..+.-.|  .+..++++..      .|.|+-+|.++|+++.++.
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             ceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            98877653211  11111111  1345666543      4889999999999987653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.56  E-value=2.1e-05  Score=62.99  Aligned_cols=218  Identities=14%  Similarity=0.157  Sum_probs=116.5

Q ss_pred             CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecC-C-----CcEEEEeCCCCceeEEcc------CCCCCeEE
Q 035621           63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGL-S-----GNVYAISVPKGDILRSFS------AHDKPVSC  130 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~------~~~~~v~~  130 (387)
                      ++.|.+.|+..++..+....+......+|||||+.||.... +     ..|.+++..+++......      ........
T Consensus        20 ~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~   99 (281)
T d1k32a2          20 CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDV   99 (281)
T ss_dssp             TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEE
T ss_pred             CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccc
Confidence            45688889988887666667778899999999999986532 2     247888887776543221      11234567


Q ss_pred             EEEcCCCCEEEEEeCCC------cEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCC-
Q 035621          131 LKISPDGSLLISGGDDG------VIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDC-  203 (387)
Q Consensus       131 ~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~-  203 (387)
                      ..|+|+++.++......      .+...+..             ......  .+....... +.+++ +..++....+. 
T Consensus       100 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~--~~~~~~~~~-~~~~~-~~~~~~~~~~~~  162 (281)
T d1k32a2         100 AGFDPDGNLIISTDAMQPFSSMTCLYRVEND-------------GINFVP--LNLGPATHI-LFADG-RRVIGRNTFELP  162 (281)
T ss_dssp             EEECTTCCEEEEECTTSSSTTCCEEEEEEGG-------------GTEEEE--CCSCSCSEE-EEETT-EEEEEESCSCCT
T ss_pred             cccCCCCCEEEEEEccCCCccceeeeeecCC-------------CceeEE--ecCCcccee-eecCC-CeEEEeeccccc
Confidence            88999999888754321      12333331             111111  112222222 22332 23333322211 


Q ss_pred             ----------cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEcc--CCcEEEEeccccccccccccceeEeeccc
Q 035621          204 ----------TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS--DGLIYKGLLKYQSRQQMHKGQELVTLANR  271 (387)
Q Consensus       204 ----------~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  271 (387)
                                ..........................++++. .+.....  ...|+++|+......         .+...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~---------~lt~~  232 (281)
T d1k32a2         163 HWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLR---------KHTSF  232 (281)
T ss_dssp             TSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCE---------ECCCC
T ss_pred             eeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceE---------EeecC
Confidence                      1112222222222222233444445555542 2333333  345677777653221         11111


Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEE
Q 035621          272 HDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMV  310 (387)
Q Consensus       272 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  310 (387)
                      ....+  ..|+|||+.|+.. .++.|+++|+.+++....
T Consensus       233 ~~~~~--~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         233 TDYYP--RHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             CSSCE--EEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred             CCccc--ccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence            22222  3589999988764 468899999998887654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.54  E-value=4.3e-06  Score=67.22  Aligned_cols=241  Identities=10%  Similarity=-0.056  Sum_probs=124.5

Q ss_pred             cccCC--CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCC--CeEEEEEccCCCccc
Q 035621            3 HHLPC--NEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGS--GSVHLYNLWSSTPLH   78 (387)
Q Consensus         3 ~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d--~~v~vw~~~~~~~~~   78 (387)
                      ..|||  |+.+|..+ +|.|++.|+.+++.. .+..+.+.+...+|+|++...+-.-...+.+  ..|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            46899  99988765 467999999877754 5666777788999999876554211112333  347777777776554


Q ss_pred             ccCCC-------CCeeeEEeccCCCEEEEecCC------CcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeC
Q 035621           79 NIPVP-------EPVAPLATTADGSYLFTGGLS------GNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGD  145 (387)
Q Consensus        79 ~~~~~-------~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  145 (387)
                      .....       .......|+|+|+.|+.....      ..+...+...+.....   +........+.+.+..++....
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  159 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTF  159 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCS
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeecc
Confidence            33322       235678899999998875332      2345555544443222   2222233333333333333322


Q ss_pred             CCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC--CcEEEEeCCCCcEEEEEecCC
Q 035621          146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD--CTCKFWRLLNGTHLSTVTFPC  223 (387)
Q Consensus       146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~  223 (387)
                      +........... .... .......................+.++   .++.....+  ..|.++|+.++... .+....
T Consensus       160 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~  233 (281)
T d1k32a2         160 ELPHWKGYRGGT-RGKI-WIEVNSGAFKKIVDMSTHVSSPVIVGH---RIYFITDIDGFGQIYSTDLDGKDLR-KHTSFT  233 (281)
T ss_dssp             CCTTSTTCCSTT-CCEE-EEEEETTEEEEEECCSSCCEEEEEETT---EEEEEECTTSSCEEEEEETTSCSCE-ECCCCC
T ss_pred             ccceeeeeccCC-ccee-eeeccccceeeccCCccccceeeeecc---ccceecccccccceEEEeCCCCceE-EeecCC
Confidence            211000000000 0000 000000111111222233333333332   233333333  35777888766543 343333


Q ss_pred             ceeEEEeCCCCCeEEEEccCCcEEEEeccccc
Q 035621          224 AIMGLALDPTETDFFAAGSDGLIYKGLLKYQS  255 (387)
Q Consensus       224 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  255 (387)
                      ......|+|||+.|+. ..++.|+++|+.++.
T Consensus       234 ~~~~~~~SpDG~~I~f-~~~~~l~~~d~~~g~  264 (281)
T d1k32a2         234 DYYPRHLNTDGRRILF-SKGGSIYIFNPDTEK  264 (281)
T ss_dssp             SSCEEEEEESSSCEEE-EETTEEEEECTTTCC
T ss_pred             CcccccCcCCCCEEEE-EeCCEEEEEECCCCC
Confidence            3334568999998876 446789999988754

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.54  E-value=0.00011  Score=65.08  Aligned_cols=109  Identities=16%  Similarity=0.202  Sum_probs=64.6

Q ss_pred             CCcEEEeeCCCCcEEEEeC-CCCceeEeccCCCCC----c-------eeEEEcCccceeeeccccCCCCCeEEEEEccCC
Q 035621            7 CNEVILTSSPEGPITAYNP-SSGAILAHFSGSRSP----R-------RGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS   74 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~----v-------~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~   74 (387)
                      +|.++++.+.++.|...|. ++|+.+-++......    .       +.+++..+.      ++.++.|+.+.-.|.+++
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~------i~~~~~~g~l~alda~tG  135 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQ------IVKKQANGHLLALDAKTG  135 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTE------EEEECTTSEEEEEETTTC
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCe------EEEEeCCCcEEeeehhhh
Confidence            3444444444688999997 479988876421111    0       223444333      333578899999999999


Q ss_pred             CcccccCCCC-----CeeeEEeccCCCEEEEec------CCCcEEEEeCCCCceeEEcc
Q 035621           75 TPLHNIPVPE-----PVAPLATTADGSYLFTGG------LSGNVYAISVPKGDILRSFS  122 (387)
Q Consensus        75 ~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~  122 (387)
                      +.........     .++.--.-.++ .++.+.      ..|.|.-+|+.+|+.+..+.
T Consensus       136 ~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         136 KINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             hhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            8876554221     11111111133 444444      36789999999999887643

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.49  E-value=6.5e-05  Score=66.56  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=65.6

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCCCCC-----------ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSP-----------RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL   77 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~   77 (387)
                      ..|..++.++.|.-.|.+||+.+-++......           -..++...      ..++.+..++.+.-.|..+++.+
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~g~l~Alda~tG~~~  140 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWG------DKVYVGTLDGRLIALDAKTGKAI  140 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEB------TEEEEECTTSEEEEEETTTCCEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeC------CeEEEEeCCCEEEEEECCCCcEE
Confidence            34556667789999999999998876422111           01122222      22334678899999999999888


Q ss_pred             cccCCCCCe--eeEEecc--CCCEEEEecC------CCcEEEEeCCCCceeEEcc
Q 035621           78 HNIPVPEPV--APLATTA--DGSYLFTGGL------SGNVYAISVPKGDILRSFS  122 (387)
Q Consensus        78 ~~~~~~~~v--~~~~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~  122 (387)
                      .........  ..+.-.|  .+..++.+..      .|.|.-+|.++|+.+..+.
T Consensus       141 w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             eccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeee
Confidence            766532211  1111111  1234444432      3679999999999887764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=0.00015  Score=56.72  Aligned_cols=230  Identities=12%  Similarity=0.138  Sum_probs=140.7

Q ss_pred             cCCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCC-CcccccCC-
Q 035621            5 LPCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSS-TPLHNIPV-   82 (387)
Q Consensus         5 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~-~~~~~~~~-   82 (387)
                      +|..+.||.-+ ..++.|+|+++.+.++.+.- ..+|.--.|-.+..+..-      .+..|+-|+++.. .+.+.+.. 
T Consensus        71 hP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lV------T~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          71 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALV------TDNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             CSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSSEEEEE------CSSEEEEEESSSSCCCEEEEECC
T ss_pred             CCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCCEEEEE------cCCceEEEcccCCCCchhhhhhc
Confidence            67888888766 46899999999999888773 446777777765444322      4678999998543 34444431 


Q ss_pred             ----CCCeeeEEeccCCCEEEEec-------CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCC---CEEEEEe---C
Q 035621           83 ----PEPVAPLATTADGSYLFTGG-------LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDG---SLLISGG---D  145 (387)
Q Consensus        83 ----~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~---~  145 (387)
                          ...|..-..++++++++..+       -.|.+.+|..+. +..+.+++|.+....+.+..+.   +.++.+.   .
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence                24577777888888877543       236788998754 4456677776655555443221   1333222   2


Q ss_pred             CCcEEEEeCCcccccCCCCCCCCccceEeeec---cCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 035621          146 DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA---HNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVT-F  221 (387)
Q Consensus       146 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~  221 (387)
                      .+.+.+.++.......   .....+....+..   ..+---++..++..  ..++.-+.-|.|++||+.++.++..-+ .
T Consensus       222 ~~kLhIiEig~~~~g~---~~f~kk~vdi~fppea~~DFPvamqvs~ky--giiyviTK~G~i~lyDleTgt~i~~nRIs  296 (327)
T d1utca2         222 GGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQNDFPVAMQISEKH--DVVFLITKYGYIHLYDLETGTCIYMNRIS  296 (327)
T ss_dssp             EEEEEEEECSCCCTTC---CCCCCEEEECCCCTTCTTCCEEEEEEETTT--TEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CcEEEEEEcCCCccCC---CCCcceeEEEECCccccCCcEEEEEeeccC--CEEEEEecCcEEEEEEcccccEEEEeecC
Confidence            3678888874321110   0001111111111   12333456666664  688888899999999999999998877 3


Q ss_pred             CCceeEEEeCCCCCeEEEEccCCcEEE
Q 035621          222 PCAIMGLALDPTETDFFAAGSDGLIYK  248 (387)
Q Consensus       222 ~~~v~~~~~~~~~~~l~~~~~dg~i~i  248 (387)
                      ...|...+-+....-+++...+|.|..
T Consensus       297 ~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         297 GETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             CCceEEeccCCCCceEEEECCCCeEEE
Confidence            555555555555445555556666543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.39  E-value=0.00035  Score=57.74  Aligned_cols=306  Identities=14%  Similarity=0.106  Sum_probs=173.6

Q ss_pred             cccCCCCCeEEEEEccCCCcccccCC----------------------------------------CCCee--eEEecc-
Q 035621           57 ISPTTGSGSVHLYNLWSSTPLHNIPV----------------------------------------PEPVA--PLATTA-   93 (387)
Q Consensus        57 ~~~~~~d~~v~vw~~~~~~~~~~~~~----------------------------------------~~~v~--~~~~~~-   93 (387)
                      +.+|+..|.|+++-+.+++.++.+..                                        .+...  .+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            44588889999998887766654430                                        00111  233433 


Q ss_pred             --CCCEEEEec-CCCcEEEEeCCCCceeEEcc-CCCCCeEEEEEcC--CCCEEEEEeCCCc------------------E
Q 035621           94 --DGSYLFTGG-LSGNVYAISVPKGDILRSFS-AHDKPVSCLKISP--DGSLLISGGDDGV------------------I  149 (387)
Q Consensus        94 --~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~------------------i  149 (387)
                        ||++|++.. .++.|.+.|+.+.+....+. .....+..+...+  +..+++..+.+..                  +
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              788888776 56799999999988755443 2345667777654  5557777766431                  3


Q ss_pred             EEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCC---------------------------
Q 035621          150 ATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMD---------------------------  202 (387)
Q Consensus       150 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---------------------------  202 (387)
                      ..+|.            .+.+...+... .+....+.+++++  +++++.+.+                           
T Consensus       176 t~ID~------------~tm~V~~QV~V-~g~ld~~~~s~dG--K~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie  240 (459)
T d1fwxa2         176 TAVDA------------DKWEVAWQVLV-SGNLDNCDADYEG--KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  240 (459)
T ss_dssp             EEEET------------TTTEEEEEEEE-SSCCCCEEECSSS--SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             EEEec------------CCceEEEEeee-CCChhccccCCCC--CEEEEEeccccCCcchhhcccccceEEEEechHHhH
Confidence            44554            22222222221 2334456777775  666665432                           


Q ss_pred             -----------CcEEEEeCCC---CcEEEEEecCCceeEEEeCCCCCeEEEEcc-CCcEEEEeccccccccc---cccce
Q 035621          203 -----------CTCKFWRLLN---GTHLSTVTFPCAIMGLALDPTETDFFAAGS-DGLIYKGLLKYQSRQQM---HKGQE  264 (387)
Q Consensus       203 -----------~~i~iwd~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~---~~~~~  264 (387)
                                 +.+.+-|.++   ...++.+..+.....+..+|||+++++++. +..+.++|++.-.....   .....
T Consensus       241 ~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~  320 (459)
T d1fwxa2         241 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  320 (459)
T ss_dssp             HHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred             HhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence                       1233444432   123445556667888999999999999877 89999999975322111   00111


Q ss_pred             eEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc----------cEEEEeecccCCCceeEEEEec---CCCc
Q 035621          265 LVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR----------QVVMVLKNELAGSISEMVIATG---IGGS  331 (387)
Q Consensus       265 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~v~~~~~~~~---~~~~  331 (387)
                      +... ....-....-+|+..|....|---|..|.-|++...          ..+.++..|..  +-.+..+-|   ..++
T Consensus       321 ~~~e-~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~--~gh~~~~~g~t~~~dg  397 (459)
T d1fwxa2         321 VVAE-PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ--PGHLKTVMGETLDATN  397 (459)
T ss_dssp             EEEC-CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC--EEEEEETTTTSTTCCS
T ss_pred             EEee-cccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccC--CCCCccCcCCcCCCCC
Confidence            1111 123344677789888876667778999999998543          55666655432  222222221   1222


Q ss_pred             e-eeEEEe-cCCCCCCCCCcceeeeccceeccccccchhhhceeeeeeccccc
Q 035621          332 R-GCGVVK-TGKAGNDSGGGVFEMYGEKLLDLSIKNTIELENVMTVAEKDRSK  382 (387)
Q Consensus       332 ~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (387)
                      . .+...+ +.+.....||...  ...+++.++-++.+-+.+....+|.....
T Consensus       398 k~l~~~nk~skdrfl~vgpl~p--e~~qlidisg~~m~l~~d~p~~~ePh~~~  448 (459)
T d1fwxa2         398 DWLVCLSKFSKDRFLNVGPLKP--ENDQLIDISGDKMVLVHDGPTFAEPHDAI  448 (459)
T ss_dssp             SEEEEEESCCTTSSCCCCSSCC--EEEEEEECSSSSCEEEEEEEESSCCCCEE
T ss_pred             CEEEEecccccccccCCCCCCC--ccceEEEcCCCeeEEEeccCCCCCCccEE
Confidence            2 333333 3333334433333  33566666656655555655555554443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.39  E-value=0.00011  Score=60.68  Aligned_cols=240  Identities=10%  Similarity=0.057  Sum_probs=141.5

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEeccCCC---------------------------------------CCce--eEEEcC
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHFSGSR---------------------------------------SPRR--GLTFAG   48 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------------------------------~~v~--~~~~~~   48 (387)
                      .+.+|+..|.|+|+-+.+++.+..+.-..                                       +...  .+.+. 
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~T-   93 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT-   93 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEE-
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCccccc-
Confidence            36789999999999998888766553110                                       0011  11221 


Q ss_pred             ccceeeecc-ccCCCCCeEEEEEccCCCccc--ccCCCCCeeeEEecc--CCCEEEEecCCC------------------
Q 035621           49 KPFIAASHI-SPTTGSGSVHLYNLWSSTPLH--NIPVPEPVAPLATTA--DGSYLFTGGLSG------------------  105 (387)
Q Consensus        49 ~~~~~~~~~-~~~~~d~~v~vw~~~~~~~~~--~~~~~~~v~~~~~~~--~~~~l~~~~~dg------------------  105 (387)
                      ++.+.+.++ +.-..+.+|.+.|+.+.+..+  .++....+..+...+  +-.|++.++...                  
T Consensus        94 dGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          94 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             CCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence            222222222 234567889999999888755  444455677776654  556777765532                  


Q ss_pred             cEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEeCCcccccC---------
Q 035621          106 NVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDG---------------VIATVPIFQLVDEH---------  161 (387)
Q Consensus       106 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~~~~~~---------  161 (387)
                      .+.++|..+.+....+.- .+....+.++++|+++++.+.+.               .+.+++........         
T Consensus       174 ~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            367788888877766543 34567899999999999887542               13334432110000         


Q ss_pred             -----CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceE-EEEeCCCcEEEEeCCCCc------------EEEEEecCC
Q 035621          162 -----TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSII-ISCSMDCTCKFWRLLNGT------------HLSTVTFPC  223 (387)
Q Consensus       162 -----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~------------~~~~~~~~~  223 (387)
                           ..........+..+... .....+.++|++  +++ +++..+.++.++|+++..            .....+..-
T Consensus       253 gV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDG--Kyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elgl  329 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDK--KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL  329 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTS--SEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCS
T ss_pred             CceeecccccCCcceeEEEecC-CCCCceEECCCC--CEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCc
Confidence                 00000011122222222 223457778886  555 455568999999996421            122233455


Q ss_pred             ceeEEEeCCCCCeEEEEccCCcEEEEecccc
Q 035621          224 AIMGLALDPTETDFFAAGSDGLIYKGLLKYQ  254 (387)
Q Consensus       224 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  254 (387)
                      ....-+|...|.-..+---|..|.-|++...
T Consensus       330 gPLht~fd~~g~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         330 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred             CccccccCCCceEEEEeeccceEEEEecchh
Confidence            6778899988855555566999999999653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.34  E-value=0.00023  Score=63.10  Aligned_cols=246  Identities=12%  Similarity=-0.010  Sum_probs=133.6

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCCCC----Ccee-EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGSRS----PRRG-LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP   83 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~   83 (387)
                      ..++.++.||.+.-.|.++|+.+........    .++. -.+..+..+...........|.|.-+|+.+|+.+..+...
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  195 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEecc
Confidence            4567788899999999999998765532111    1111 1112222222221111234788999999999887654311


Q ss_pred             --------------------------------------CCe-eeEEeccCCCEEEEecC----------------CCcEE
Q 035621           84 --------------------------------------EPV-APLATTADGSYLFTGGL----------------SGNVY  108 (387)
Q Consensus        84 --------------------------------------~~v-~~~~~~~~~~~l~~~~~----------------dg~i~  108 (387)
                                                            ..+ ...++.+....++.+..                ...+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svv  275 (571)
T d2ad6a1         196 GSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIW  275 (571)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEE
T ss_pred             CCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccccee
Confidence                                                  011 23466666666665543                24578


Q ss_pred             EEeCCCCceeEEccCCCCC---------eEEEEEcCCCC---EEEEEeCCCcEEEEeCCcccccC---CCCC--------
Q 035621          109 AISVPKGDILRSFSAHDKP---------VSCLKISPDGS---LLISGGDDGVIATVPIFQLVDEH---TDDK--------  165 (387)
Q Consensus       109 i~d~~~~~~~~~~~~~~~~---------v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~---~~~~--------  165 (387)
                      ..|.++|+.+..++.....         ........+++   .++.++.+|.+.++|........   ....        
T Consensus       276 Ald~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~  355 (571)
T d2ad6a1         276 GRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVD  355 (571)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred             eeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccccc
Confidence            8899999988776532211         11112222343   46777888988888864321100   0000        


Q ss_pred             CCCccc--------------eEeeeccCCCe--EEEEEeeCCCCceEEEEe-----------------------------
Q 035621          166 NPDDLM--------------LQKFVAHNDSV--TAITCCIGSFNSIIISCS-----------------------------  200 (387)
Q Consensus       166 ~~~~~~--------------~~~~~~~~~~i--~~~~~~~~~~~~~l~s~~-----------------------------  200 (387)
                      .....+              ........+..  ...++.|..  .+++...                             
T Consensus       356 ~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~--~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (571)
T d2ad6a1         356 LKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES--RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP  433 (571)
T ss_dssp             TTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             ccccccccCcccccccccCceEEEeccccccccccceECCCC--ceEEEeccccccccccccccccCCccccccceeecc
Confidence            000000              00000000000  012333322  2222111                             


Q ss_pred             --------CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecccccc
Q 035621          201 --------MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSR  256 (387)
Q Consensus       201 --------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  256 (387)
                              ..|.|.-+|+.+++.+.++....+..+-.+...+..+++++.||.++.+|.++++.
T Consensus       434 ~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~  497 (571)
T d2ad6a1         434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             CTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence                    12578899999999998887655444333344577888999999999999998543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.33  E-value=0.00079  Score=59.61  Aligned_cols=107  Identities=9%  Similarity=0.114  Sum_probs=65.1

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCCCCC-----------ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcc
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSP-----------RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPL   77 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~   77 (387)
                      ..|+.++.++.|.-+|.+||+.+-++......           -..+.+..+.      ++.++.++.+.-.|..+|+.+
T Consensus        78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------v~~~t~~g~l~alda~tG~~~  151 (573)
T d1kb0a2          78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGK------VYVGAWDGRLIALDAATGKEV  151 (573)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTE------EEEECTTSEEEEEETTTCCEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCc------EEEEecccceeeeccccccce
Confidence            35666777899999999999998876422110           1123333322      223567889998999999887


Q ss_pred             cccCC---CCCeeeEEecc--CCCEEEEecC------CCcEEEEeCCCCceeEEc
Q 035621           78 HNIPV---PEPVAPLATTA--DGSYLFTGGL------SGNVYAISVPKGDILRSF  121 (387)
Q Consensus        78 ~~~~~---~~~v~~~~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~  121 (387)
                      .....   ...-..+.-.|  -+..+++++.      .|.|..+|.++|+.+..+
T Consensus       152 W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         152 WHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             EEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeee
Confidence            54432   11111111111  1334555532      467999999999988765

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.29  E-value=0.00048  Score=60.87  Aligned_cols=248  Identities=10%  Similarity=0.097  Sum_probs=137.2

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCCC-ceeE----EEcCccceeeeccccCCCCCeEEEEEccCCCcccccCC
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRSP-RRGL----TFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV   82 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~----~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~   82 (387)
                      +..++.+..++.|.-.|..+|+.+......... -..+    .+..+..+...........|.|.-+|.++|+.+..+..
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            346778888999999999999998776532211 1111    11122222222222234568899999999988776541


Q ss_pred             C-------------------------------CC-eeeEEeccCCCEEEEecC-------------------CCcEEEEe
Q 035621           83 P-------------------------------EP-VAPLATTADGSYLFTGGL-------------------SGNVYAIS  111 (387)
Q Consensus        83 ~-------------------------------~~-v~~~~~~~~~~~l~~~~~-------------------dg~i~i~d  111 (387)
                      .                               .. -..+++.+...+++.+..                   ...|.-.|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld  276 (560)
T d1kv9a2         197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (560)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence            0                               00 122556666666654421                   23577889


Q ss_pred             CCCCceeEEccCCCCCe---------EEEEEcCCC---CEEEEEeCCCcEEEEeCCcccccCC---CCC-----------
Q 035621          112 VPKGDILRSFSAHDKPV---------SCLKISPDG---SLLISGGDDGVIATVPIFQLVDEHT---DDK-----------  165 (387)
Q Consensus       112 ~~~~~~~~~~~~~~~~v---------~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~---~~~-----------  165 (387)
                      +++++....++.....+         .-+....++   ..++.+..+|.+.++|.........   ...           
T Consensus       277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~  356 (560)
T d1kv9a2         277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (560)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence            99999876665322211         111222233   2577788899999998743211000   000           


Q ss_pred             --------CCCccceEeeeccCCC--eEEEEEeeCCCCceEEEEe-----------------------------------
Q 035621          166 --------NPDDLMLQKFVAHNDS--VTAITCCIGSFNSIIISCS-----------------------------------  200 (387)
Q Consensus       166 --------~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~s~~-----------------------------------  200 (387)
                              ............-.+.  -...++.|+.  .+++...                                   
T Consensus       357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~--~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  434 (560)
T d1kv9a2         357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT--GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA  434 (560)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT--TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred             cccccccccccccceeeeeccccccccccccccCCC--CeeecccccccceeeccccccccccccccccCcccccCCCCc
Confidence                    0000000000000000  0122333332  2222211                                   


Q ss_pred             -CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621          201 -MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ  257 (387)
Q Consensus       201 -~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  257 (387)
                       ..|.|.-||+.+++.+.++....+...-.+.-.+.++++|+.||.++.+|..+++..
T Consensus       435 ~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         435 VVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             GCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence             125788999999999998886665554444556778899999999999999996543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.14  E-value=0.0012  Score=55.14  Aligned_cols=266  Identities=14%  Similarity=0.071  Sum_probs=136.2

Q ss_pred             CCCcEEEeeCCCC-----------cEEEEeCCCCceeEe--c-cCCCCCceeEEEcCccceeeeccccCC-CCCeEEEEE
Q 035621            6 PCNEVILTSSPEG-----------PITAYNPSSGAILAH--F-SGSRSPRRGLTFAGKPFIAASHISPTT-GSGSVHLYN   70 (387)
Q Consensus         6 ~~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~~~~~~~~~~-~d~~v~vw~   70 (387)
                      .+|++++.|+.+.           .+.+||+.+++....  . ..|.....+.++.+++.+...    |+ ....+.+||
T Consensus        29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~----Gg~~~~~~~~yd  104 (387)
T d1k3ia3          29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVT----GGNDAKKTSLYD  104 (387)
T ss_dssp             TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEE----CSSSTTCEEEEE
T ss_pred             eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEe----ecCCCcceeEec
Confidence            4788888877431           277899988764321  1 223222345566676554432    43 346899999


Q ss_pred             ccCCCcccc--cCCCCCeeeEEeccCCCEEEEecCC------CcEEEEeCCCCceeEEcc---------CCC-----CCe
Q 035621           71 LWSSTPLHN--IPVPEPVAPLATTADGSYLFTGGLS------GNVYAISVPKGDILRSFS---------AHD-----KPV  128 (387)
Q Consensus        71 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~---------~~~-----~~v  128 (387)
                      ..+......  ......-...+..+||++++.|+.+      ..+.+||..+.+-...-.         .+.     ..-
T Consensus       105 ~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  184 (387)
T d1k3ia3         105 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNH  184 (387)
T ss_dssp             GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCS
T ss_pred             CccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccce
Confidence            987654322  2233344567778899999998743      368999987764322110         000     001


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeeec----cCC--CeEEEEEeeCCCCceEEEEeCC
Q 035621          129 SCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA----HND--SVTAITCCIGSFNSIIISCSMD  202 (387)
Q Consensus       129 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~i~~~~~~~~~~~~~l~s~~~d  202 (387)
                      ..+...++++.+..+..++.+..++.....          .........    +..  .-.++.+ +..++++++.|+..
T Consensus       185 ~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~v~v~GG~~  253 (387)
T d1k3ia3         185 AWLFGWKKGSVFQAGPSTAMNWYYTSGSGD----------VKSAGKRQSNRGVAPDAMCGNAVMY-DAVKGKILTFGGSP  253 (387)
T ss_dssp             CCEEECGGGCEEECCSSSEEEEEECSTTCE----------EEEEEECEETTEECCCCBTCEEEEE-ETTTTEEEEECCBS
T ss_pred             eEEEEeCCCCEEEecCcCCcEEecCcccCc----------EeeccccccCcccCcccccccEEEe-eccCCceEEEEecc
Confidence            112234467777777777777776663210          000000000    111  1112222 22234666666542


Q ss_pred             C--------cEEEEeCCCC---cEEEEE----ecCCceeEEEeCCCCCeEEEEccCC-----------cEEEEecccccc
Q 035621          203 C--------TCKFWRLLNG---THLSTV----TFPCAIMGLALDPTETDFFAAGSDG-----------LIYKGLLKYQSR  256 (387)
Q Consensus       203 ~--------~i~iwd~~~~---~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~  256 (387)
                      .        ...+.++...   ......    .....-.+....++++.++.|+.+.           .+.+||..+...
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W  333 (387)
T d1k3ia3         254 DYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF  333 (387)
T ss_dssp             SSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred             CCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeE
Confidence            1        2333333221   111111    1222334566678999999887531           467888876543


Q ss_pred             ccccccceeEeecccccccEEEEEEecCCCEEEEEeC
Q 035621          257 QQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE  293 (387)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  293 (387)
                      .........   ...|.    ...+.+||+.|+.|+.
T Consensus       334 ~~~~~~~~~---R~~Hs----~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         334 YKQNPNSIV---RVYHS----ISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             EECCCCSSC---CCTTE----EEEECTTSCEEEEECC
T ss_pred             EECCCCCCc---ccceE----EEEECCCCEEEEEeCC
Confidence            222111000   01232    2345789999999874

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.13  E-value=0.00074  Score=59.80  Aligned_cols=55  Identities=13%  Similarity=0.070  Sum_probs=43.1

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621          203 CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ  257 (387)
Q Consensus       203 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  257 (387)
                      |.+.-||+.+++.+.+++...+...-..+-.+..+++|+.||.++.+|.++++..
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence            4688899999999988886655443344457889999999999999999996543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.12  E-value=0.0025  Score=56.46  Aligned_cols=108  Identities=19%  Similarity=0.263  Sum_probs=62.5

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCceeEeccCCCC----C-----ceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc
Q 035621            8 NEVILTSSPEGPITAYNPSSGAILAHFSGSRS----P-----RRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH   78 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~-----v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~   78 (387)
                      +..|.+++.++.|.-.|.+||+.+-++.....    +     -..+++..+..+      .++.++.+.-.|..+++.+.
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~------~~t~~~~l~alda~tG~~~W  141 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVF------FGTLDASVVALNKNTGKVVW  141 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEE------EEETTTEEEEEESSSCCEEE
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceE------EecCCCeEEEecccccceee
Confidence            34566677889999999999999887642110    0     112333333332      35678888888999998765


Q ss_pred             ccCCCCC-----e--eeEEecc--CCCEEEEec-------CCCcEEEEeCCCCceeEEc
Q 035621           79 NIPVPEP-----V--APLATTA--DGSYLFTGG-------LSGNVYAISVPKGDILRSF  121 (387)
Q Consensus        79 ~~~~~~~-----v--~~~~~~~--~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~  121 (387)
                      .....+.     .  .-..+.+  .+..++..+       ..+.|.-+|.++|+.+..+
T Consensus       142 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~  200 (582)
T d1flga_         142 KKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             EEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred             eecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEE
Confidence            4332110     0  0011111  123333322       3456888999999887655

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.05  E-value=0.0035  Score=55.51  Aligned_cols=247  Identities=12%  Similarity=0.067  Sum_probs=136.0

Q ss_pred             cEEEeeCCCCcEEEEeCCCCceeEeccCCCCC----cee-EEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCC
Q 035621            9 EVILTSSPEGPITAYNPSSGAILAHFSGSRSP----RRG-LTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVP   83 (387)
Q Consensus         9 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----v~~-~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~   83 (387)
                      .+++.++.|+.|.-.|.++|+.+..+......    ++. -.+..+..+......-....|.|+-+|+.+|+.+..+...
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~  201 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence            46888899999999999999998877432111    111 1122222222221111234689999999999887654310


Q ss_pred             ---------------------------------------CCeeeEEeccCCCEEEEecCC----------------CcEE
Q 035621           84 ---------------------------------------EPVAPLATTADGSYLFTGGLS----------------GNVY  108 (387)
Q Consensus        84 ---------------------------------------~~v~~~~~~~~~~~l~~~~~d----------------g~i~  108 (387)
                                                             ..-..+++.+...+++.+..+                ..|.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv  281 (596)
T d1w6sa_         202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (596)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence                                                   011234566666666665332                3478


Q ss_pred             EEeCCCCceeEEccC--CC-------CCeEEEE-EcCCCC---EEEEEeCCCcEEEEeCCcccccCCCCC----------
Q 035621          109 AISVPKGDILRSFSA--HD-------KPVSCLK-ISPDGS---LLISGGDDGVIATVPIFQLVDEHTDDK----------  165 (387)
Q Consensus       109 i~d~~~~~~~~~~~~--~~-------~~v~~~~-~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~----------  165 (387)
                      -.|+++|+.+..++.  |.       ....-+. ...+++   .++....+|.+.++|............          
T Consensus       282 AlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~  361 (596)
T d1w6sa_         282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV  361 (596)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             ccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccccc
Confidence            889999998876652  21       1111222 123443   577788889998888753211100000          


Q ss_pred             -CCCccceE-------------eeecc-CC--CeEEEEEeeCCCCceEEEE-----------------------------
Q 035621          166 -NPDDLMLQ-------------KFVAH-ND--SVTAITCCIGSFNSIIISC-----------------------------  199 (387)
Q Consensus       166 -~~~~~~~~-------------~~~~~-~~--~i~~~~~~~~~~~~~l~s~-----------------------------  199 (387)
                       .....++.             .+... .+  .-...++.|..  .+++..                             
T Consensus       362 d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~--~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  439 (596)
T d1w6sa_         362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR--ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMY  439 (596)
T ss_dssp             CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccccccCccccccCCccceeEecccccccccCccccCCCC--ceEEecccccccccccccccccccccccccccccc
Confidence             00000000             00000 00  00011222221  111111                             


Q ss_pred             -e---------CCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621          200 -S---------MDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ  257 (387)
Q Consensus       200 -~---------~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  257 (387)
                       +         .-|.|.-||+.+++.+.......+...-.++..+..++.|+.||.++.+|.++++..
T Consensus       440 ~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~L  507 (596)
T d1w6sa_         440 PGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (596)
T ss_dssp             ECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cCcccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEe
Confidence             0         125789999999999888876655554444556788889999999999999995543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=0.0017  Score=50.96  Aligned_cols=219  Identities=8%  Similarity=-0.071  Sum_probs=134.7

Q ss_pred             CCeeeEEeccCCCEEEEec-CCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCcccccC
Q 035621           84 EPVAPLATTADGSYLFTGG-LSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISG-GDDGVIATVPIFQLVDEH  161 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~  161 (387)
                      ..+..++|.+..+.|+... .++.|+..++..+.....+......+.++++..-+..|..+ ...+.|.+.++.      
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d------  109 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD------  109 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT------
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecC------
Confidence            3467789998877777664 55789888887665555454444678999998766656544 556789888872      


Q ss_pred             CCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCc--EEEEeCCCCcEEEEEe-cCCceeEEEeCCCCCeEE
Q 035621          162 TDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCT--CKFWRLLNGTHLSTVT-FPCAIMGLALDPTETDFF  238 (387)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~  238 (387)
                            .................+++.|.. +.++.+-...+.  |.--++.......... .-..+..+++.+.++.|+
T Consensus       110 ------g~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lY  182 (263)
T d1npea_         110 ------GTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLC  182 (263)
T ss_dssp             ------SCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred             ------CceEEEEecccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEE
Confidence                  111111222233567889998875 344444333233  4444554333222222 224678999998887776


Q ss_pred             EE-ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccCC
Q 035621          239 AA-GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELAG  317 (387)
Q Consensus       239 ~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  317 (387)
                      .+ ...+.|...++......         ....+- ....++++. ++.++.+-...+.|...|..+++.+..+......
T Consensus       183 w~d~~~~~I~~~~~~g~~~~---------~v~~~~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~  251 (263)
T d1npea_         183 WVDAGTHRAECLNPAQPGRR---------KVLEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT  251 (263)
T ss_dssp             EEETTTTEEEEEETTEEEEE---------EEEECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCC
T ss_pred             EEeCCCCEEEEEECCCCCeE---------EEECCC-CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCC
Confidence            65 45788888888653221         111121 234678775 3444455556788999999999988877655444


Q ss_pred             CceeEEEEe
Q 035621          318 SISEMVIAT  326 (387)
Q Consensus       318 ~v~~~~~~~  326 (387)
                      .+.++.+..
T Consensus       252 ~~~gi~v~~  260 (263)
T d1npea_         252 RLYGITIAL  260 (263)
T ss_dssp             CCCCEEEEC
T ss_pred             CcceEEEeC
Confidence            566665543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=0.0019  Score=50.72  Aligned_cols=226  Identities=9%  Similarity=-0.075  Sum_probs=129.9

Q ss_pred             CcEEEeeCCCCcEEEEeCCCCce-----eEeccCCCCCceeEEEcCcc-ceeeeccccCCCCCeEEEEEccCCCcccccC
Q 035621            8 NEVILTSSPEGPITAYNPSSGAI-----LAHFSGSRSPRRGLTFAGKP-FIAASHISPTTGSGSVHLYNLWSSTPLHNIP   81 (387)
Q Consensus         8 ~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~   81 (387)
                      |.+|+.+.. +.|+-.+++....     ...+..+...+.+++|.... .+..    +-..++.|+..++........+.
T Consensus         1 ~~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iyw----sd~~~~~I~~~~l~g~~~~~v~~   75 (263)
T d1npea_           1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYW----TDISEPSIGRASLHGGEPTTIIR   75 (263)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEE----EETTTTEEEEEESSSCCCEEEEC
T ss_pred             CCEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEE----EECCCCeEEEEEcccCCcEEEEE
Confidence            345555543 5677677643321     11223333446778887632 2211    13566788888886655444333


Q ss_pred             C-CCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEE--eCCc
Q 035621           82 V-PEPVAPLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDD-GVIATV--PIFQ  156 (387)
Q Consensus        82 ~-~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iw--d~~~  156 (387)
                      . ...+..+++..-+..|+.+ ...+.|.+.++........+......+..++++|...+++..... +..+|+  ++. 
T Consensus        76 ~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d-  154 (263)
T d1npea_          76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-  154 (263)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-
T ss_pred             eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC-
Confidence            2 2568899998766666654 456789999987655433333334678999999977766655432 233344  331 


Q ss_pred             ccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCe
Q 035621          157 LVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETD  236 (387)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  236 (387)
                                 ...........-.....+++.+.. +.+..+-...+.|...|+........+........+++.  +..
T Consensus       155 -----------G~~~~~i~~~~~~~P~glaiD~~~-~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~  220 (263)
T d1npea_         155 -----------GTNRRILAQDNLGLPNGLTFDAFS-SQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKN  220 (263)
T ss_dssp             -----------SCCCEEEECTTCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTE
T ss_pred             -----------CCCceeeeeecccccceEEEeecC-cEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCE
Confidence                       111111122233455788887664 334455456788999998755444344433345677775  444


Q ss_pred             EEEE-ccCCcEEEEeccc
Q 035621          237 FFAA-GSDGLIYKGLLKY  253 (387)
Q Consensus       237 l~~~-~~dg~i~i~d~~~  253 (387)
                      |+.. ...+.|...|..+
T Consensus       221 lYwtd~~~~~I~~~~~~~  238 (263)
T d1npea_         221 LYYTDWKTNSVIAMDLAI  238 (263)
T ss_dssp             EEEEETTTTEEEEEETTT
T ss_pred             EEEEECCCCEEEEEECCC
Confidence            5444 4567888888766

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=0.0027  Score=49.92  Aligned_cols=238  Identities=13%  Similarity=-0.006  Sum_probs=142.3

Q ss_pred             CCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEec-CCCcEEEEeCCCCc----eeEEccCCCCCeEEEEEcCCC
Q 035621           63 SGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGG-LSGNVYAISVPKGD----ILRSFSAHDKPVSCLKISPDG  137 (387)
Q Consensus        63 d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~  137 (387)
                      ...|+-.++.+.+....+.....+..++|.+..+.|+... ..+.|.-.++....    ....+......+..+++.+.+
T Consensus         9 ~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1           9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            3457778887665555555556788899999888777664 45667766664321    122223334567789998766


Q ss_pred             CEEEEE-eCCCcEEEEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEE-eCCCcEEEEeCCCCcE
Q 035621          138 SLLISG-GDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISC-SMDCTCKFWRLLNGTH  215 (387)
Q Consensus       138 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~  215 (387)
                      ..|..+ ...+.|.+.++.            .................+++.|.. +.++.+. +..+.|.-.++.....
T Consensus        89 ~~lY~~d~~~~~I~v~~~~------------g~~~~~~~~~~~~~P~~l~vd~~~-g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTK------------GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             TEEEEEETTTTEEEEEETT------------SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCE
T ss_pred             ceEEEEecCCCEEEeEecC------------CceEEEEEcCCCCCcceEEEEccc-CeEEEeccCCCcceeEeccCCCce
Confidence            655555 456789999882            222333344445567889988864 3444443 2334676667654443


Q ss_pred             EEEEe-cCCceeEEEeCCCCCeEEEE-ccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeC
Q 035621          216 LSTVT-FPCAIMGLALDPTETDFFAA-GSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAE  293 (387)
Q Consensus       216 ~~~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  293 (387)
                      ..... .-..+..+++.+.++.|+.+ ...+.|...++.....       ..............++++.. +..+.+-..
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-------~~~~~~~~~~~~p~~lav~~-~~ly~td~~  227 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFE-DKVFWTDII  227 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEET-TEEEEEETT
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE-------EEEEeCCCcccccEEEEEEC-CEEEEEECC
Confidence            33333 23567899999988777766 4578888888765221       11111112233466788763 445555557


Q ss_pred             CCcEEEEECCCccEEEEeecccCCCceeE
Q 035621          294 DGSVYIWEIEKRQVVMVLKNELAGSISEM  322 (387)
Q Consensus       294 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  322 (387)
                      ++.|...+..+++....+..... .+.++
T Consensus       228 ~~~I~~~~~~~g~~~~~~~~~~~-~p~~i  255 (266)
T d1ijqa1         228 NEAIFSANRLTGSDVNLLAENLL-SPEDM  255 (266)
T ss_dssp             TTEEEEEETTTCCCCEEEECSCS-CCCCE
T ss_pred             CCeEEEEECCCCcceEEEEcCCC-CceEE
Confidence            78888888888877766665433 34444

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=0.0039  Score=48.68  Aligned_cols=216  Identities=10%  Similarity=0.064  Sum_probs=137.4

Q ss_pred             CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCC
Q 035621           17 EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGS   96 (387)
Q Consensus        17 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~   96 (387)
                      ..+|.|.|+.+......-.   -.-.+.-.+|...+.+-.     ...+++++|+++.+.++.+..+++|.--.|-.+. 
T Consensus        44 ~~~VvIidl~n~~~~~Rrp---i~AdsAIMhP~~~IiALr-----ag~~LQiFnletK~klks~~~~e~VvfWkWis~~-  114 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALK-----AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-  114 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEE-----ETTEEEEEETTTTEEEEEEECSSCCCEEEESSSS-
T ss_pred             CceEEEEECCCCCcceecc---cchhhhhcCCCCcEEEEe-----cCCeEEEEehhHhhhhceEEcCCCcEEEEecCCC-
Confidence            3567788876554322111   112344456766555543     2568999999999999999999999888887664 


Q ss_pred             EEEEecCCCcEEEEeCCCC-ceeEEccCCC----CCeEEEEEcCCCCEEEEEe---C----CCcEEEEeCCcccccCCCC
Q 035621           97 YLFTGGLSGNVYAISVPKG-DILRSFSAHD----KPVSCLKISPDGSLLISGG---D----DGVIATVPIFQLVDEHTDD  164 (387)
Q Consensus        97 ~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~---~----dg~i~iwd~~~~~~~~~~~  164 (387)
                      .|+..+ +..|+-|+++.. ++.+.+..|.    ..|-.-..+++.++++..+   .    .|.+.+|..          
T Consensus       115 ~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~----------  183 (327)
T d1utca2         115 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSV----------  183 (327)
T ss_dssp             EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEET----------
T ss_pred             EEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEe----------
Confidence            455543 456999999543 4566665543    4577778888999876543   2    366788877          


Q ss_pred             CCCCccceEeeeccCCCeEEEEEeeCCC-CceEEEEe---CCCcEEEEeCCCCc--------EEEEEec-----CCceeE
Q 035621          165 KNPDDLMLQKFVAHNDSVTAITCCIGSF-NSIIISCS---MDCTCKFWRLLNGT--------HLSTVTF-----PCAIMG  227 (387)
Q Consensus       165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~---~d~~i~iwd~~~~~--------~~~~~~~-----~~~v~~  227 (387)
                         .....+.+.+|...-..+.+.-+.. ..+++.+.   ..+++++.++....        ....+..     ..-..+
T Consensus       184 ---er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPva  260 (327)
T d1utca2         184 ---DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA  260 (327)
T ss_dssp             ---TTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEE
T ss_pred             ---ccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEE
Confidence               3345556666655444333221111 12333322   23678899886521        1111211     345778


Q ss_pred             EEeCCCCCeEEEEccCCcEEEEeccccc
Q 035621          228 LALDPTETDFFAAGSDGLIYKGLLKYQS  255 (387)
Q Consensus       228 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~  255 (387)
                      +..++.-..++.-+.-|.+++||+.++.
T Consensus       261 mqvs~kygiiyviTK~G~i~lyDleTgt  288 (327)
T d1utca2         261 MQISEKHDVVFLITKYGYIHLYDLETGT  288 (327)
T ss_dssp             EEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred             EEeeccCCEEEEEecCcEEEEEEccccc
Confidence            8999999999999999999999999843

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.47  E-value=0.018  Score=46.69  Aligned_cols=204  Identities=16%  Similarity=0.185  Sum_probs=120.7

Q ss_pred             cCCCEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEc------CCCCEEEEEe-C-C--CcEEEEeCCcccccCC
Q 035621           93 ADGSYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKIS------PDGSLLISGG-D-D--GVIATVPIFQLVDEHT  162 (387)
Q Consensus        93 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~-~-d--g~i~iwd~~~~~~~~~  162 (387)
                      |+..+++.....+-|++||+ +|+.+..+.  .+.++.+..-      ....-+++++ . +  .+|.+|.+..      
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~------  108 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG------  108 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEET------
T ss_pred             cCccEEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecC------
Confidence            34556666666667999998 588777765  3456655433      2222344444 2 2  2577787631      


Q ss_pred             CCCCCCccceEeeec-------cCCCeEEEEEeeCC-CC-ceEEEEeCCCcEEEEeCC---CC----cEEEEEecCCcee
Q 035621          163 DDKNPDDLMLQKFVA-------HNDSVTAITCCIGS-FN-SIIISCSMDCTCKFWRLL---NG----THLSTVTFPCAIM  226 (387)
Q Consensus       163 ~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~-~~-~~l~s~~~d~~i~iwd~~---~~----~~~~~~~~~~~v~  226 (387)
                           ....+..+..       -...+..+|+..+. ++ -+++....+|.+..|.+.   .+    +.++.+..+..+.
T Consensus       109 -----~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~E  183 (353)
T d1h6la_         109 -----KNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTE  183 (353)
T ss_dssp             -----TTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEE
T ss_pred             -----cccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccc
Confidence                 1111111111       12246677774332 13 356677778999888763   23    4566777888999


Q ss_pred             EEEeCCCCCeEEEEccCCcEEEEeccccccccccccceeEeecc-cccccEEEEEEec--CCC-E-EEEEeCCCcEEEEE
Q 035621          227 GLALDPTETDFFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLAN-RHDGVVVSVMMMN--EGK-N-LVSAAEDGSVYIWE  301 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~--~~~-~-l~s~~~dg~i~iwd  301 (387)
                      .|.+.+....|+.+-.+..|+.++........   ...+..... .....+-.|+.-.  ++. + |+|.-.+++..+||
T Consensus       184 GCVvDde~~~LyisEE~~Giw~~~a~~~~~~~---~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         184 GMAADDEYGSLYIAEEDEAIWKFSAEPDGGSN---GTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEESSTTSCSC---CEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             eEEEeCCCCcEEEecCccceEEEEeccCCCcc---ceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence            99999999999999888777666654322110   111111111 2345677777543  323 4 44555678999999


Q ss_pred             CCC-ccEEEEeec
Q 035621          302 IEK-RQVVMVLKN  313 (387)
Q Consensus       302 ~~~-~~~~~~~~~  313 (387)
                      ... .+.+..|.-
T Consensus       261 r~~~~~~~g~F~i  273 (353)
T d1h6la_         261 RQGQNKYVADFQI  273 (353)
T ss_dssp             SSTTCCEEEEEEE
T ss_pred             cCCCccccceEEE
Confidence            987 477777753

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.30  E-value=0.048  Score=47.93  Aligned_cols=55  Identities=11%  Similarity=-0.017  Sum_probs=44.5

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEeccccccc
Q 035621          203 CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLKYQSRQ  257 (387)
Q Consensus       203 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  257 (387)
                      |.|.-+|+.+++.+.++..+.++..-.++..+..+++|+.||.++.+|.++++..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence            6788999999999999887666554445567788899999999999999995543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.12  E-value=0.02  Score=47.41  Aligned_cols=92  Identities=9%  Similarity=0.020  Sum_probs=59.5

Q ss_pred             eEEEEEccCCCcccc----cCCCCCeeeEEeccCCCEEEEecCC-CcEEEEeCCCCceeEEccC-CCCCeEEEEEcCCCC
Q 035621           65 SVHLYNLWSSTPLHN----IPVPEPVAPLATTADGSYLFTGGLS-GNVYAISVPKGDILRSFSA-HDKPVSCLKISPDGS  138 (387)
Q Consensus        65 ~v~vw~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~  138 (387)
                      .+.+||..+++-...    ..+.......++.++|++++.|+.+ ..+.+||..+..-...-.. ....-.+.+..+|++
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~  132 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR  132 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCc
Confidence            467899887754322    1122334556788999999988765 5899999877654322111 112234567778999


Q ss_pred             EEEEEeCC------CcEEEEeCCc
Q 035621          139 LLISGGDD------GVIATVPIFQ  156 (387)
Q Consensus       139 ~l~~~~~d------g~i~iwd~~~  156 (387)
                      +++.++.+      ..+.+||...
T Consensus       133 v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         133 VFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EEEECCCCCSSSCCCCEEEEETTT
T ss_pred             eeeeccccccccccceeeeecCCC
Confidence            99988753      3588898843

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.11  Score=40.34  Aligned_cols=221  Identities=10%  Similarity=-0.017  Sum_probs=126.6

Q ss_pred             EEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCcc--ceeeeccccCCCCCeEEEEEccCCCc----ccccC-C
Q 035621           10 VILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKP--FIAASHISPTTGSGSVHLYNLWSSTP----LHNIP-V   82 (387)
Q Consensus        10 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~d~~v~vw~~~~~~~----~~~~~-~   82 (387)
                      +|+.+.. ..|+-.++.+.+....+. ....+.++.|++..  .+-.     -...+.|.-.++.....    ...+. .
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~-----D~~~~~I~~~~l~~~~~~~~~~~~~~~~   75 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWS-----DLSQRMICSTQLDRAHGVSSYDTVISRD   75 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEE-----ETTTTEEEEEEC--------CEEEECSS
T ss_pred             EEEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEE-----ECCCCEEEEEEecCCCCCcceEEEEeCC
Confidence            3444443 468889987655444333 44557788888632  2221     23456666666543211    11111 2


Q ss_pred             CCCeeeEEeccCCCEEEEe-cCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCcccc
Q 035621           83 PEPVAPLATTADGSYLFTG-GLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGG--DDGVIATVPIFQLVD  159 (387)
Q Consensus        83 ~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~  159 (387)
                      ...+..+++.+.+..|+.. ...+.|.+.++........+.........++++|...+|+...  ..+.|.-.++     
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~-----  150 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL-----  150 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET-----
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEecc-----
Confidence            2457788998866666665 4557899999876665555555556789999999666665544  3345555555     


Q ss_pred             cCCCCCCCCccceEeee-ccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---CCceeEEEeCCCCC
Q 035621          160 EHTDDKNPDDLMLQKFV-AHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---PCAIMGLALDPTET  235 (387)
Q Consensus       160 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~  235 (387)
                              .+.....+. ..-.....+++.+.. +.+..+-...+.|...++........+..   ......+++.  +.
T Consensus       151 --------dGs~~~~l~~~~~~~p~gl~iD~~~-~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~  219 (266)
T d1ijqa1         151 --------NGVDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--ED  219 (266)
T ss_dssp             --------TSCCEEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TT
T ss_pred             --------CCCceecccccccceeeEEEeeccc-cEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CC
Confidence                    222223332 233456788888764 34555556678899999865544333332   2345567766  33


Q ss_pred             eEEEE-ccCCcEEEEeccc
Q 035621          236 DFFAA-GSDGLIYKGLLKY  253 (387)
Q Consensus       236 ~l~~~-~~dg~i~i~d~~~  253 (387)
                      .|+.. ..++.|+..+..+
T Consensus       220 ~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         220 KVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             EEEEEETTTTEEEEEETTT
T ss_pred             EEEEEECCCCeEEEEECCC
Confidence            44444 4567777766554

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.46  E-value=0.094  Score=38.36  Aligned_cols=215  Identities=13%  Similarity=0.124  Sum_probs=115.7

Q ss_pred             CCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcC----ccceeeeccccCCCCCeEEEEEccCCCcccccCC
Q 035621            7 CNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAG----KPFIAASHISPTTGSGSVHLYNLWSSTPLHNIPV   82 (387)
Q Consensus         7 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~~~~~   82 (387)
                      +.++++++...|.+.++-+..++.+.--+   .+|.... .|    +....+.-+.-|-.-..+.+-++........+..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~s  100 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA  100 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecC
Confidence            44578888888999999887776554322   2332221 11    1111222222344445566666554344444545


Q ss_pred             CCCeeeEEeccC-CCEEEEecCCCcEEEEeCCCCceeE--EccCC-------CCCeEEEEE-cCCCCEEEEEeC-CCcEE
Q 035621           83 PEPVAPLATTAD-GSYLFTGGLSGNVYAISVPKGDILR--SFSAH-------DKPVSCLKI-SPDGSLLISGGD-DGVIA  150 (387)
Q Consensus        83 ~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~-------~~~v~~~~~-~~~~~~l~~~~~-dg~i~  150 (387)
                      +.++.-+...-+ .+..++|+......+|-++.|++..  .+.+.       ..-|..+.+ .++.+-++++.- .|.++
T Consensus       101 pk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr  180 (313)
T d2hu7a1         101 VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  180 (313)
T ss_dssp             SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred             CceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence            555554444443 4567788877778888887776432  22211       122333332 233333555554 66677


Q ss_pred             EEeCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeC---CCcEEEEeCCCCcEEEE-Ee------
Q 035621          151 TVPIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSM---DCTCKFWRLLNGTHLST-VT------  220 (387)
Q Consensus       151 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~-~~------  220 (387)
                      +++-                       ..+.++.....+.   +.++++-.   .....-+|+++++..+. ++      
T Consensus       181 i~tp-----------------------keGS~~~ay~~~g---nKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~s  234 (313)
T d2hu7a1         181 VFDS-----------------------GEGSFSSASISPG---MKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSS  234 (313)
T ss_dssp             EECC-----------------------SSEEEEEEEECTT---SCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHH
T ss_pred             EecC-----------------------CCCcccceeEccC---ceeeeccCCCCceEEEEEecccCceeeeecCccccee
Confidence            6654                       3344444444433   33333322   11222457776653321 11      


Q ss_pred             -cCCceeEEEeCCCCCeEEEEccCCcEEEEec
Q 035621          221 -FPCAIMGLALDPTETDFFAAGSDGLIYKGLL  251 (387)
Q Consensus       221 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~  251 (387)
                       .+..|.-+-+.|+++.++.+-.||.-.+|.-
T Consensus       235 y~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~n  266 (313)
T d2hu7a1         235 YRPTAITWLGYLPDGRLAVVARREGRSAVFID  266 (313)
T ss_dssp             HCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ecceEEEeeeeCCCCcEEEEEecCCchheeec
Confidence             2345666779999999999999999888863

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.39  E-value=0.18  Score=40.70  Aligned_cols=63  Identities=13%  Similarity=0.203  Sum_probs=42.2

Q ss_pred             CCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEE---EEEecCCceeEEEeCCCCCeEEEEcc
Q 035621          179 NDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHL---STVTFPCAIMGLALDPTETDFFAAGS  242 (387)
Q Consensus       179 ~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~  242 (387)
                      -...+.|+++|++ ..++++-+..++|+.|++.....+   ..+..+..+-.+.+.+.+..+.+++.
T Consensus       205 l~~pNGI~~s~d~-~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         205 FDFANGINISPDG-KYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             ESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             CCccceeEECCCC-CEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence            3567889999885 345566666889999998754322   33346677888888875555555543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.30  E-value=0.24  Score=41.39  Aligned_cols=251  Identities=12%  Similarity=0.044  Sum_probs=126.5

Q ss_pred             ceeEEEcCccceeeeccc-cCCCCCeEEEEEccCCCcccccCCCCCeeeEEeccCCCEEEEecCC---------------
Q 035621           41 RRGLTFAGKPFIAASHIS-PTTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTADGSYLFTGGLS---------------  104 (387)
Q Consensus        41 v~~~~~~~~~~~~~~~~~-~~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------  104 (387)
                      +....++|++..++-.+- .|+....++++|+.+++.+...-.......++|.+|++.|+....+               
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~  206 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence            456677887766654443 3444568999999999765422111223678999999987754322               


Q ss_pred             -CcEEEEeCCCCce--eEEccC--CCCCeEEEEEcCCCCEEEEEeC---CCcEEEE--eCCcccccCCCCCCCCccceEe
Q 035621          105 -GNVYAISVPKGDI--LRSFSA--HDKPVSCLKISPDGSLLISGGD---DGVIATV--PIFQLVDEHTDDKNPDDLMLQK  174 (387)
Q Consensus       105 -g~i~i~d~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~  174 (387)
                       ..|..+.+.+...  ...+..  ....+..+..++++++++....   ++...+|  |+.......    .........
T Consensus       207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~~~  282 (430)
T d1qfma1         207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI----TGILKWVKL  282 (430)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS----CSSCCCEEE
T ss_pred             cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccc----ccccceeEe
Confidence             2577777766532  233332  2334667788999998764432   3333444  442211100    001111112


Q ss_pred             eeccCCCeEEEEEeeCCCCceEEEEeC---CCcEEEEeCCCCcE---EEEEec-CCceeEEEeCCCCCeEEEEc-cCC--
Q 035621          175 FVAHNDSVTAITCCIGSFNSIIISCSM---DCTCKFWRLLNGTH---LSTVTF-PCAIMGLALDPTETDFFAAG-SDG--  244 (387)
Q Consensus       175 ~~~~~~~i~~~~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~---~~~~~~-~~~v~~~~~~~~~~~l~~~~-~dg--  244 (387)
                      ..........+. +.+  +.+++....   ++.|...++.....   ...+.. ...+..-.+...+.+|+... .++  
T Consensus       283 ~~~~~~~~~~~~-~~~--~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~  359 (430)
T d1qfma1         283 IDNFEGEYDYVT-NEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (430)
T ss_dssp             ECSSSSCEEEEE-EET--TEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             ecccccceEEEe-cCC--ceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEe
Confidence            222222222222 222  133333322   35666667665432   122332 33344444444455666554 443  


Q ss_pred             cEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEE--e--CCCcEEEEECCCccE
Q 035621          245 LIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSA--A--EDGSVYIWEIEKRQV  307 (387)
Q Consensus       245 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~--~dg~i~iwd~~~~~~  307 (387)
                      .|+++++..+...         .......+.|..+...++...+...  +  .=.++.-+|+.+++.
T Consensus       360 ~l~v~~~~~~~~~---------~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         360 TLQLHDLATGALL---------KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEEEEETTTCCEE---------EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEEEEECCCCcEE---------EecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            4777877653221         1111223455555555555433322  2  236788999988864

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.25  Score=40.26  Aligned_cols=136  Identities=8%  Similarity=0.003  Sum_probs=85.8

Q ss_pred             CCeeeEEeccCCCEEEEecCCCcEEEEeCCC-----------CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 035621           84 EPVAPLATTADGSYLFTGGLSGNVYAISVPK-----------GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATV  152 (387)
Q Consensus        84 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  152 (387)
                      ....-++.++...++++|+.++ +.+.....           ........  -..|..++|+.+  .++.. .++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEE
Confidence            4577889999888888888775 66765311           11111111  235888999754  45444 45667778


Q ss_pred             eCCcccccCCCCCCCCccceEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEE------EecCCcee
Q 035621          153 PIFQLVDEHTDDKNPDDLMLQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLST------VTFPCAIM  226 (387)
Q Consensus       153 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~------~~~~~~v~  226 (387)
                      +....            ........-..++..+.+.|.    .++....++.+.++++..++....      +.....+.
T Consensus       111 ~~~~l------------~~~~~~~~~~~~~~~~~~~p~----~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~  174 (381)
T d1xipa_         111 DLEEL------------SEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQL  174 (381)
T ss_dssp             ESSST------------TCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEE
T ss_pred             Eeecc------------ccccccccccccccceecCCc----eeEEEecCCCEEEEEeccCccccccCCcceEEecCCce
Confidence            77332            222333334456777766553    566677789999999988864332      22456788


Q ss_pred             EEEeCCCCCeEEEEc
Q 035621          227 GLALDPTETDFFAAG  241 (387)
Q Consensus       227 ~~~~~~~~~~l~~~~  241 (387)
                      +++|++.|..++++.
T Consensus       175 ~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         175 AVLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEEETTSCEEEEEEE
T ss_pred             EEEEeCCcEEEEEeC
Confidence            888888888887764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.03  E-value=0.27  Score=39.53  Aligned_cols=204  Identities=11%  Similarity=0.182  Sum_probs=117.4

Q ss_pred             CCCcEEEeeCCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCc----cceeeeccccCCC--CCeEEEEEccCC-Cccc
Q 035621            6 PCNEVILTSSPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGK----PFIAASHISPTTG--SGSVHLYNLWSS-TPLH   78 (387)
Q Consensus         6 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~--d~~v~vw~~~~~-~~~~   78 (387)
                      |+..+++....++-|++||+ .|+.++.+.  .+.++.+..-..    .....-.+++.-.  ..+|.+|.+... ..+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            44566666666667999998 488887764  345666554321    0000001111222  236888887532 2222


Q ss_pred             ccCC--------CCCeeeEEe--ccC-CC-EEEEecCCCcEEEEeCC---CC----ceeEEccCCCCCeEEEEEcCCCCE
Q 035621           79 NIPV--------PEPVAPLAT--TAD-GS-YLFTGGLSGNVYAISVP---KG----DILRSFSAHDKPVSCLKISPDGSL  139 (387)
Q Consensus        79 ~~~~--------~~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~v~~~~~~~~~~~  139 (387)
                      .+..        ...++.+|+  ++. |. ++++...+|.+..|.+.   .+    +.++.+. -...+-.|.+.+....
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGS  193 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCc
Confidence            2221        134777777  554 44 56667788988888762   23    3344554 3457889999998889


Q ss_pred             EEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee--ccCCCeEEEEEeeCC--CCceEEEEeCCCcEEEEeCCCC-c
Q 035621          140 LISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV--AHNDSVTAITCCIGS--FNSIIISCSMDCTCKFWRLLNG-T  214 (387)
Q Consensus       140 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~-~  214 (387)
                      |+.+-++.-|..++....       .......+....  .....+..|+.-...  .+-+|+|.-.+.+..+||.... +
T Consensus       194 LyisEE~~Giw~~~a~~~-------~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~  266 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPD-------GGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNK  266 (353)
T ss_dssp             EEEEETTTEEEEEESSTT-------SCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred             EEEecCccceEEEEeccC-------CCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCcc
Confidence            999988876655554210       001122222221  134577778776543  3445555556789999998763 5


Q ss_pred             EEEEEe
Q 035621          215 HLSTVT  220 (387)
Q Consensus       215 ~~~~~~  220 (387)
                      .+..|.
T Consensus       267 ~~g~F~  272 (353)
T d1h6la_         267 YVADFQ  272 (353)
T ss_dssp             EEEEEE
T ss_pred             ccceEE
Confidence            666654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.37  Score=39.19  Aligned_cols=132  Identities=8%  Similarity=-0.005  Sum_probs=79.8

Q ss_pred             CccccCCCcEEEeeCCCCcEEEEeCCC-----------CceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEE
Q 035621            1 LLHHLPCNEVILTSSPEGPITAYNPSS-----------GAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLY   69 (387)
Q Consensus         1 vl~~s~~~~~l~~~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw   69 (387)
                      +|+.++...++++|+.++ +.|-.++.           .......  .-..|..++|+.+....       ..++.+..+
T Consensus        41 LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d~l~v-------~~~~~l~~~  110 (381)
T d1xipa_          41 NLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGDQVLV-------STRNALYSL  110 (381)
T ss_dssp             CEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETTEEEE-------EESSEEEEE
T ss_pred             eEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCCEEEE-------EeCCCEEEE
Confidence            467777777888887765 56665321           1111111  12247888888764332       245667777


Q ss_pred             EccCCCcccccC-CCCCeeeEEeccCCCEEEEecCCCcEEEEeCCCCceeEEcc-----CCCCCeEEEEEcCCCCEEEEE
Q 035621           70 NLWSSTPLHNIP-VPEPVAPLATTADGSYLFTGGLSGNVYAISVPKGDILRSFS-----AHDKPVSCLKISPDGSLLISG  143 (387)
Q Consensus        70 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~  143 (387)
                      +...-....... ...++..+.+.|.  .++....+|.+.++++..++......     .-.+.+.++.|++.+..++++
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~  188 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW  188 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred             EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEe
Confidence            765543332222 3456777777775  45556678899999998875432211     123567888888888877776


Q ss_pred             e
Q 035621          144 G  144 (387)
Q Consensus       144 ~  144 (387)
                      .
T Consensus       189 ~  189 (381)
T d1xipa_         189 R  189 (381)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.52  E-value=0.54  Score=39.15  Aligned_cols=240  Identities=12%  Similarity=0.131  Sum_probs=120.9

Q ss_pred             ccccCCCcEEEee-----CCCCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceee-eccc-----------cCCCCC
Q 035621            2 LHHLPCNEVILTS-----SPEGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAA-SHIS-----------PTTGSG   64 (387)
Q Consensus         2 l~~s~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~-----------~~~~d~   64 (387)
                      +++|||++++|.+     +..-.|+++|+.+++.+..--. ......++|.++...+. ..+-           ......
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~  208 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQ  208 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCC
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccCCcc
Confidence            3679999988853     3345699999999987642211 11125678887543221 1110           012234


Q ss_pred             eEEEEEccCCCcc--cccCC---CCCeeeEEeccCCCEEEEecC---CCc--EEEEeCCCCc--------eeEEccCCCC
Q 035621           65 SVHLYNLWSSTPL--HNIPV---PEPVAPLATTADGSYLFTGGL---SGN--VYAISVPKGD--------ILRSFSAHDK  126 (387)
Q Consensus        65 ~v~vw~~~~~~~~--~~~~~---~~~v~~~~~~~~~~~l~~~~~---dg~--i~i~d~~~~~--------~~~~~~~~~~  126 (387)
                      .|..+.+.+....  ..+..   ...+..+..++++++++....   +..  +.+.++....        ....+.....
T Consensus       209 ~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  288 (430)
T d1qfma1         209 KLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG  288 (430)
T ss_dssp             EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS
T ss_pred             eEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeeccccc
Confidence            6777877665322  22221   223556778899998775432   233  4444543221        1122222222


Q ss_pred             CeEEEEEcCCCCEEEEEeC---CCcEEEEeCCcccccCCCCCCCCccceEeeec-cCCCeEEEEEeeCCCCceEE-EEeC
Q 035621          127 PVSCLKISPDGSLLISGGD---DGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA-HNDSVTAITCCIGSFNSIII-SCSM  201 (387)
Q Consensus       127 ~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~-s~~~  201 (387)
                      ...-+. +.++.+++....   ++.|...++..          ........+.. +...+..-.+....  .+|+ .-..
T Consensus       289 ~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~----------~~~~~w~~vi~~~~~~~~~~~~~~~~--~~lvl~~~~  355 (430)
T d1qfma1         289 EYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTD----------PEESKWKVLVPEHEKDVLEWVACVRS--NFLVLCYLH  355 (430)
T ss_dssp             CEEEEE-EETTEEEEEECTTCTTCEEEEEETTB----------CCGGGCEEEECCCSSCEEEEEEEETT--TEEEEEEEE
T ss_pred             ceEEEe-cCCceeecccCcccccceeEEecCCC----------CccccceEEecccCcceeeeEEEEEC--CEEEEEEEc
Confidence            233222 223333333332   35566666632          11122233333 34444433333332  4454 4445


Q ss_pred             CC--cEEEEeCCCCcEEEEEec-CCceeEEEeCCCCCeEEEEcc----CCcEEEEeccccc
Q 035621          202 DC--TCKFWRLLNGTHLSTVTF-PCAIMGLALDPTETDFFAAGS----DGLIYKGLLKYQS  255 (387)
Q Consensus       202 d~--~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~  255 (387)
                      ++  .|+++++.++.....+.. ...+..+...++...+...-.    -..++.+|+.++.
T Consensus       356 ~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         356 DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            54  588899988876544432 344555555566555444322    3678888887743

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.29  E-value=0.34  Score=35.41  Aligned_cols=226  Identities=9%  Similarity=0.091  Sum_probs=111.3

Q ss_pred             CCCCCeEEEEEccCCCcccccCCCCCeeeEEeccC--CCEEEEe------cCCCcEEEEeCCCCceeEEccCCC-CCeEE
Q 035621           60 TTGSGSVHLYNLWSSTPLHNIPVPEPVAPLATTAD--GSYLFTG------GLSGNVYAISVPKGDILRSFSAHD-KPVSC  130 (387)
Q Consensus        60 ~~~d~~v~vw~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~------~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~  130 (387)
                      +...|.+.++-+..++.+..-+  ++|... ..|.  -.++...      -.-..|.+-++...-....+.... -.|.+
T Consensus        32 ~~seG~vni~~l~g~~~vkLtk--ePI~~~-~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~vRI~S  108 (313)
T d2hu7a1          32 GFSEGSVNAYLYDGGETVKLNR--EPINSV-LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILS  108 (313)
T ss_dssp             EEETTEEEEEEESSSSCEECCS--SCCSEE-CEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCSBEEEE
T ss_pred             EeccceEEEEEEeCCEEEEEec--ccccCc-CCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCceEEEEE
Confidence            4567888888777666554332  222211 1111  1122111      122345666664322233343333 45667


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEeee-------ccCCCeEEEEEeeCCCCceEEEEeC-C
Q 035621          131 LKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKFV-------AHNDSVTAITCCIGSFNSIIISCSM-D  202 (387)
Q Consensus       131 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~l~s~~~-d  202 (387)
                      ++.. +.+..++|+......+|-+...          .-..+..+.       -....|..+.+...+ ..-+.++.. .
T Consensus       109 ~~yd-dk~vvF~Gased~~~LYviegG----------klrkL~~vPpFsFVtDI~~d~I~G~g~~~g~-~~sfF~adl~S  176 (313)
T d2hu7a1         109 GVDT-GEAVVFTGATEDRVALYALDGG----------GLRELARLPGFGFVSDIRGDLIAGLGFFGGG-RVSLFTSNLSS  176 (313)
T ss_dssp             EEEC-SSCEEEEEECSSCEEEEEEETT----------EEEEEEEESSCEEEEEEETTEEEEEEEEETT-EEEEEEEETTT
T ss_pred             eeec-CceEEEecccCCceEEEEEeCC----------ceeeeccCCCcceEEeccCCeEEEEeeecCC-cceEEEEeccc
Confidence            7665 4567778877777777766210          111111111       123345555554333 233444444 6


Q ss_pred             CcEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEcc-CCc--EEEEeccccccccc-cccceeEeecccccccEEE
Q 035621          203 CTCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAGS-DGL--IYKGLLKYQSRQQM-HKGQELVTLANRHDGVVVS  278 (387)
Q Consensus       203 ~~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~  278 (387)
                      |.+++++...|..          +...+.++.+. +++-. -|.  ..-+|++.+.-... .+...   +..-..-.|+-
T Consensus       177 G~lri~tpkeGS~----------~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd---~~sy~p~~I~~  242 (313)
T d2hu7a1         177 GGLRVFDSGEGSF----------SSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKD---FSSYRPTAITW  242 (313)
T ss_dssp             EEEEEECCSSEEE----------EEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCH---HHHHCCSEEEE
T ss_pred             CCEEEecCCCCcc----------cceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCccc---ceeecceEEEe
Confidence            7777777655543          33344444433 33221 111  11235553221111 00111   11112335666


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECCCccEEEEeecccC
Q 035621          279 VMMMNEGKNLVSAAEDGSVYIWEIEKRQVVMVLKNELA  316 (387)
Q Consensus       279 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  316 (387)
                      +-+.|++++++.+-.||.=++|.  +|+.+..-++.+.
T Consensus       243 ~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~p~G~~~  278 (313)
T d2hu7a1         243 LGYLPDGRLAVVARREGRSAVFI--DGERVEAPQGNHG  278 (313)
T ss_dssp             EEECTTSCEEEEEEETTEEEEEE--TTEEECCCSSEEE
T ss_pred             eeeCCCCcEEEEEecCCchheee--cceEecCCCCccc
Confidence            77899999989999999999997  7888877665544

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.74  E-value=0.75  Score=36.50  Aligned_cols=206  Identities=13%  Similarity=0.093  Sum_probs=115.9

Q ss_pred             cCCCEEEEecCCCcEEEEeCCC----CceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCC
Q 035621           93 ADGSYLFTGGLSGNVYAISVPK----GDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPD  168 (387)
Q Consensus        93 ~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  168 (387)
                      |+...+++-+.+|.|+-..+.+    +..-..++. ...+..+........|+.-+..|.++.-...+......   ...
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k~-~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~---~s~   78 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW---KDL   78 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT---TSC
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcccC-CceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccc---ccc
Confidence            5666778888889887665422    110111222 33455544444445566667778776655543322211   112


Q ss_pred             ccceEeee--ccCCCeEEEE-EeeCCCCceEEEEeCCCcEEEEeCCCCc------EEE--EEecCCceeEEEeCCCCCeE
Q 035621          169 DLMLQKFV--AHNDSVTAIT-CCIGSFNSIIISCSMDCTCKFWRLLNGT------HLS--TVTFPCAIMGLALDPTETDF  237 (387)
Q Consensus       169 ~~~~~~~~--~~~~~i~~~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~~------~~~--~~~~~~~v~~~~~~~~~~~l  237 (387)
                      +.++..+-  .....+..+. ..+.....+|+..+..|.++-.++....      ...  .+.....+..+.+..+...+
T Consensus        79 G~pi~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i  158 (323)
T d1wp5a_          79 GQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL  158 (323)
T ss_dssp             CEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred             cccceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEE
Confidence            33332221  1233444333 3332335788889999999998874321      122  22345677777777777889


Q ss_pred             EEEccCCcEEEEecccccccc-ccccceeEeecccccccEEEE-EEecCCCEEEEEeCCCcEEEEECCC
Q 035621          238 FAAGSDGLIYKGLLKYQSRQQ-MHKGQELVTLANRHDGVVVSV-MMMNEGKNLVSAAEDGSVYIWEIEK  304 (387)
Q Consensus       238 ~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg~i~iwd~~~  304 (387)
                      +.++..|.+..++...-.... ...+.....+  .....|.+. ...+++..|+..+..|..+.-.+..
T Consensus       159 ~l~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL--~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e  225 (323)
T d1wp5a_         159 FLVTHNGYALWFDESEVSIVGVRAAGVKGMNL--KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE  225 (323)
T ss_dssp             EEEETTSEEEEEEGGGSCBCCSSCCCEECCCC--CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             EEEEecceeeEeecccccccCccccccccccc--ccccccchhhhccccccceeeeeeeheeecccchh
Confidence            999999999999877533221 1122222222  233445544 4456677889999999888866544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.66  E-value=0.81  Score=36.60  Aligned_cols=190  Identities=11%  Similarity=0.022  Sum_probs=98.9

Q ss_pred             eeeEEeccCCCEEEEecC------------CCcEEEEeCCCCcee-EEcc--CC-----CCCeEEEEE--cCCCC-EEEE
Q 035621           86 VAPLATTADGSYLFTGGL------------SGNVYAISVPKGDIL-RSFS--AH-----DKPVSCLKI--SPDGS-LLIS  142 (387)
Q Consensus        86 v~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~-~~~~--~~-----~~~v~~~~~--~~~~~-~l~~  142 (387)
                      ...+...|+|..+++++.            .|.|.++|+.+.+.. ..+.  +.     .-....+..  .++++ +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            345666777766655432            488999998765432 1221  11     012344443  44555 3444


Q ss_pred             Ee---CCCcEEEEeCCcccccCCCCCCCCccceEeeec-cCCCeEEEEEeeCCCCceEEEEeC---------------CC
Q 035621          143 GG---DDGVIATVPIFQLVDEHTDDKNPDDLMLQKFVA-HNDSVTAITCCIGSFNSIIISCSM---------------DC  203 (387)
Q Consensus       143 ~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~---------------d~  203 (387)
                      ..   ...+|.+|++...        ......+..+.. .....+.+++..++  .+++|-..               -+
T Consensus       117 vnH~~~~~~ieif~~~~~--------~~~l~~~~~v~~~~~~~pNDv~~~~~g--~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEE--------EKSLLHLKTIRHKLLPSVNDIVAVGPE--HFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             EECSTTCCEEEEEEEETT--------TTEEEEEEEECCTTCSSEEEEEEEETT--EEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             EeccCCCceeEEEEEeCC--------CCeEEEEeecCCccccCccceEEecCC--CEEEecCccCcChhhhhhhHhhcCC
Confidence            42   3456778877221        001111122211 12346788877664  67776311               12


Q ss_pred             cEEEEeCCCCcEEEEEecCCceeEEEeCCCCCeEEEEc-cCCcEEEEeccccccccccccceeEeecccccccEEEEEEe
Q 035621          204 TCKFWRLLNGTHLSTVTFPCAIMGLALDPTETDFFAAG-SDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMM  282 (387)
Q Consensus       204 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  282 (387)
                      ...+|....++.......-...+.++++|++++|+++. ..+.|+.|++.......      ..... .-.+.+-.+.+.
T Consensus       187 ~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~------~~~~~-~l~~~pDNi~~d  259 (340)
T d1v04a_         187 WSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLT------PLRVL-SFDTLVDNISVD  259 (340)
T ss_dssp             CEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEE------EEEEE-ECSSEEEEEEEC
T ss_pred             ceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccc------eEEEe-cCCCCCCccEEe
Confidence            33444444444333334446789999999998887764 48899999987532111      11111 123456677777


Q ss_pred             cCCCEEEEEe
Q 035621          283 NEGKNLVSAA  292 (387)
Q Consensus       283 ~~~~~l~s~~  292 (387)
                      +++..+..++
T Consensus       260 ~~~g~lwva~  269 (340)
T d1v04a_         260 PVTGDLWVGC  269 (340)
T ss_dssp             TTTCCEEEEE
T ss_pred             cCCCEEEEEE
Confidence            6443344443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.71  E-value=1.6  Score=36.40  Aligned_cols=48  Identities=27%  Similarity=0.382  Sum_probs=34.3

Q ss_pred             ccccCCCcEEEeeCCCCcEEEEeCCCCcee--Eecc------CCCCCceeEEEcCc
Q 035621            2 LHHLPCNEVILTSSPEGPITAYNPSSGAIL--AHFS------GSRSPRRGLTFAGK   49 (387)
Q Consensus         2 l~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~------~~~~~v~~~~~~~~   49 (387)
                      |+|.|||++|++--..|.|++++..+++..  ..+.      .-......|+++|+
T Consensus        32 la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          32 LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             EEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            679999999998766799999998776542  2221      12244678999984

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.69  E-value=1.6  Score=36.38  Aligned_cols=66  Identities=9%  Similarity=0.111  Sum_probs=43.8

Q ss_pred             eEeeeccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCCCcEEEEEec---------CCceeEEEeCCC---CCeEEE
Q 035621          172 LQKFVAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLNGTHLSTVTF---------PCAIMGLALDPT---ETDFFA  239 (387)
Q Consensus       172 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~v~~~~~~~~---~~~l~~  239 (387)
                      +..+...-..-++|+|.|++  ++|++--..|.|++++..+++.......         +.....++++|+   ..++..
T Consensus        19 ~~~ia~~L~~P~~la~~pdg--~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv   96 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDN--QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEEECCCCCceEEEEeCCC--eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence            33443334567799999885  7777765579999999887765433321         245788999986   344444

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.37  E-value=4.1  Score=30.92  Aligned_cols=61  Identities=11%  Similarity=0.105  Sum_probs=32.4

Q ss_pred             ceEEEEeCC-----CcEEEEeCCCCcEEEEEec--CCceeEEEeCCCCCeEEEEccCC-----cEEEEeccccc
Q 035621          194 SIIISCSMD-----CTCKFWRLLNGTHLSTVTF--PCAIMGLALDPTETDFFAAGSDG-----LIYKGLLKYQS  255 (387)
Q Consensus       194 ~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~  255 (387)
                      .+++.++.+     .....+|..+.+....-..  +..-.+++. .+++.++.|+.++     .+.+||+....
T Consensus       197 ~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         197 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             eEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            566665544     3567778776553332121  111123332 2567777776543     36788887643

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.24  E-value=4.2  Score=30.87  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=16.7

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCcc
Q 035621          284 EGKNLVSAAEDG-----SVYIWEIEKRQ  306 (387)
Q Consensus       284 ~~~~l~s~~~dg-----~i~iwd~~~~~  306 (387)
                      ++++++.|+.++     .|.+||+.+++
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEecCCCCeecceEEEEECCCCE
Confidence            678888887654     37889988754

>d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: DNA gyrase A C-terminal domain
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=86.03  E-value=6.2  Score=30.58  Aligned_cols=203  Identities=9%  Similarity=0.085  Sum_probs=110.8

Q ss_pred             EEEEecCCCcEEEEeCCCCce-------eE--EccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCC
Q 035621           97 YLFTGGLSGNVYAISVPKGDI-------LR--SFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNP  167 (387)
Q Consensus        97 ~l~~~~~dg~i~i~d~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  167 (387)
                      .+++.+.+|.++--.+.+-+.       ..  .++.+...+..+..+ ....|+.-+..|.++.....+.......   .
T Consensus         3 vvv~ls~~GyiKR~~~~~~~~q~rg~~g~~~~~~k~~D~v~~~~~~~-t~d~ll~fT~~G~~~~i~~~~ip~~~~~---~   78 (304)
T d1suua_           3 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRA---S   78 (304)
T ss_dssp             EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC--------
T ss_pred             EEEEEECCCeEEEeeHHHHhhccCCCCCcccccccCCCEEEEEEEec-CCCeEEEEechHhhcChhhhhccccccc---c
Confidence            567778899998776644321       11  233333333333333 3345666667777655444322211111   1


Q ss_pred             Cccce---EeeeccCCCeEEEEEeeC-CCCceEEEEeCCCcEEEEeCCCCcE-----EEEE--ecCCceeEEEeCCCCCe
Q 035621          168 DDLML---QKFVAHNDSVTAITCCIG-SFNSIIISCSMDCTCKFWRLLNGTH-----LSTV--TFPCAIMGLALDPTETD  236 (387)
Q Consensus       168 ~~~~~---~~~~~~~~~i~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~--~~~~~v~~~~~~~~~~~  236 (387)
                      .+.++   ..+. ....+..+...++ ....+++..+.+|.++-.++.....     +..+  .....+..+.....+..
T Consensus        79 ~G~~i~~l~~l~-~~e~i~~~~~~~~~~~~~~l~~~T~~G~iKr~~l~~f~~~~~~~~~a~kL~~~D~lv~v~~~~~~~~  157 (304)
T d1suua_          79 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEK  157 (304)
T ss_dssp             --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCE
T ss_pred             cccccceeeeec-cccccccccccccccccceEEEEEehhhhhhcccchhhccccccceeecccchhhccccccccccce
Confidence            11111   1121 2234444333222 2346788899999999887754321     1122  23456666666777778


Q ss_pred             EEEEccCCcEEEEeccccccccccccceeEeecccccccEEEEEEecCCCEEEEEeCCCcEEEEECCCc
Q 035621          237 FFAAGSDGLIYKGLLKYQSRQQMHKGQELVTLANRHDGVVVSVMMMNEGKNLVSAAEDGSVYIWEIEKR  305 (387)
Q Consensus       237 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  305 (387)
                      ++..+..|....++.......... ........-.....+..+...+++.+++..+.+|..+...+..-
T Consensus       158 v~~~t~~G~~lrf~~~~v~~~gr~-a~Gv~~i~L~~~d~v~~~~~~~~~~~ll~iT~~G~gKr~~~~e~  225 (304)
T d1suua_         158 VICLSKKGSAFIFNSRDVRLTNRG-TQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI  225 (304)
T ss_dssp             EEEEETTSEEEEEEGGGSCBCCTT-BCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred             eEeeccccceeeeccccccccCcc-ccceeeecccccccceeeeeccCCceEEEEecCCceEEccchhh
Confidence            888899999988887653322111 11111111123455667767777889999999999999887653

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=80.96  E-value=9.4  Score=28.78  Aligned_cols=203  Identities=10%  Similarity=-0.023  Sum_probs=93.0

Q ss_pred             CCcEEEEeCCCCceeEeccCCCCCceeEEEcCccceeeeccccCCCCCeEEEEEccCCCccc-ccCCCCCeeeEEeccCC
Q 035621           17 EGPITAYNPSSGAILAHFSGSRSPRRGLTFAGKPFIAASHISPTTGSGSVHLYNLWSSTPLH-NIPVPEPVAPLATTADG   95 (387)
Q Consensus        17 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~v~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~   95 (387)
                      ||.|+.|-..+.-.+..-......+..+.--.... .+      -.|+.+..|......... .......+..++.... 
T Consensus        43 dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~-~a------l~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~-  114 (273)
T d1jtdb_          43 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LA------LKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW-  114 (273)
T ss_dssp             TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEE-EE------EETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETT-
T ss_pred             CCEEEEEeCCCCCceeeeecccccceEEecCCCce-ee------eeeeeeeccCCCcceeeccccccccceeEEeeecc-
Confidence            78888887654322222122233355554433211 11      147899999864332211 1111233444443332 


Q ss_pred             CEEEEecCCCcEEEEeCCCCceeEEccCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEeCCcccccCCCCCCCCccceEee
Q 035621           96 SYLFTGGLSGNVYAISVPKGDILRSFSAHDKPVSCLKISPDGSLLISGGDDGVIATVPIFQLVDEHTDDKNPDDLMLQKF  175 (387)
Q Consensus        96 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  175 (387)
                       ..+. -.|+.+..|.................|..++-.   ...+....++.++.|-.....            .....
T Consensus       115 -~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~g~~~~~G~~~~g------------~~~~~  177 (273)
T d1jtdb_         115 -ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG---VYTALAVKNGGVIAWGDNYFG------------QTTVP  177 (273)
T ss_dssp             -EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC---SSEEEEEETTEEEEEECCTTS------------TTSCC
T ss_pred             -cccc-cccccceecccCCCCceeeeccCCceEEEEecc---ceeeeeecccceeEeecccCC------------ccccc
Confidence             2222 247888888743322211111122345554432   222333457888888652211            11111


Q ss_pred             eccCCCeEEEEEeeCCCCceEEEEeCCCcEEEEeCCC-CcEEEEEecCCceeEEEeCCCCCeEEEEccCCcEEEEecc
Q 035621          176 VAHNDSVTAITCCIGSFNSIIISCSMDCTCKFWRLLN-GTHLSTVTFPCAIMGLALDPTETDFFAAGSDGLIYKGLLK  252 (387)
Q Consensus       176 ~~~~~~i~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~  252 (387)
                      ......|..++....   ..++. . ||.|+.|=... ++.-........|..++-... ..++.  .||.|+.|=..
T Consensus       178 ~~~~~~v~~Is~G~~---h~~~l-~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~-~~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         178 AEAQSGVDDVAGGIF---HSLAL-K-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             GGGSSSEEEEEECSS---EEEEE-E-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEEEE--ETTEEEEESTT
T ss_pred             ccccCCccceeccce---eeEEE-e-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCcc-eEEEE--ECCEEEEECCC
Confidence            123456777765322   23332 3 79999985432 222111122244666654432 22333  48999999543