Citrus Sinensis ID: 035637

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSSWCTSKNRFQSKPLKEPAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELEQR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEEcccccccccHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccEEEEEEEEcccccccHHHcc
Coil and Loop (DISEMBL)
MESRHYIRFLFFFVGIATLLAITwnnlpyappdatedfdcttysswctsknrfqskplkepakstshhhdhasdtphhpldpltvkEINRVRTILtshelfknsfpyafhsitltqkitcpeleqr
Flexible Loop (DISEMBL)
MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSSWCTSKNRFQSKPLKEPAKSTSHHhdhasdtphhpldpltVKEINRVRTILTSHELFKNSFPYAFHsitltqkitcpeleqr
Low Complexity Region (SEG)
MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSSWCTSKNRFQSKPLKEPAKStshhhdhasdtphhpLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELEQR
Disordered region (IsUnstruct)
****HYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSSWCT**********************************LTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITC******
Disordered Region (DISOPRED)
****HYI*FLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSSWC******************************HPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCP*****
Disordered Region (DISEMBL)
MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSSWCTSKNRFQ**********************HHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELEQR
Disordered Region (DISPRO)
**SRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSSWCTS**************************PHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPE****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSSWCTSKNRFQSKPLKEPAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELEQR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
Q8H1H9	712	Primary amine oxidase OS=	no	no	0.507	0.089	0.453	5e-09

>sp|Q8H1H9|AMO_ARATH Primary amine oxidase OS=Arabidopsis thaliana GN=At1g62810 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 40/64 (62%)

Query: 53  FQSKPLKEPAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSI 112
           F ++  K    +   H DH+ + PHHPLDPLTV+EINRVRTIL++H+    S     HS+
Sbjct: 35  FGTRVRKTLGSNRQVHVDHSLEKPHHPLDPLTVREINRVRTILSNHDPGFGSGSATIHSM 94

Query: 113 TLTQ 116
            L +
Sbjct: 95  ALDE 98

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 4EC: .EC: 3EC: .EC: 2EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
297742612	636	unnamed protein product [Vitis vinifera]	0.896	0.177	0.5	3e-24
225426753	727	PREDICTED: primary amine oxidase [Vitis	0.896	0.155	0.5	4e-24
357462275	731	Primary amine oxidase [Medicago truncatu	0.904	0.155	0.474	2e-22
255537059	730	Amine oxidase [copper-containing] precur	0.873	0.150	0.524	1e-19
5733089	735	amine oxidase [Canavalia lineata]	0.880	0.151	0.447	4e-19
449459688	725	PREDICTED: primary amine oxidase-like [C	0.888	0.154	0.448	8e-19
356534598	734	PREDICTED: primary amine oxidase-like [G	0.865	0.148	0.459	3e-18
240255790	741	copper amine oxidase family protein [Ara	0.896	0.152	0.414	5e-18
297809533	751	AT4g12290/T4C9_130 [Arabidopsis lyrata s	0.920	0.154	0.406	6e-17
356557184	732	PREDICTED: primary amine oxidase-like [G	0.642	0.110	0.483	2e-16

>gi|297742612|emb|CBI34761.3| unnamed protein product [Vitis vinifera]

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 75/118 (63%), Gaps = 5/118 (4%)

Query: 1   MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSSWCTSKNR--FQSKPL 58
           ME R+ +RFLFF V    LL  TW+N PY P +  E  DCT++S WCTSK++    + P 
Sbjct: 1   MEGRNLLRFLFFLVTGLFLLLFTWSNFPYLPSNKAELLDCTSFSPWCTSKSKPHLTTNP- 59

Query: 59  KEPAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQ 116
             P +    HH  +SD PHHPLDPLTV+EINRVRTIL+SH   K S  Y  H++ L +
Sbjct: 60  TNPTRGPRRHH--SSDVPHHPLDPLTVQEINRVRTILSSHAPLKASKRYTIHAVDLEE 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426753|ref|XP_002275872.1| PREDICTED: primary amine oxidase [Vitis vinifera]

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 75/118 (63%), Gaps = 5/118 (4%)

Query: 1   MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSSWCTSKNR--FQSKPL 58
           ME R+ +RFLFF V    LL  TW+N PY P +  E  DCT++S WCTSK++    + P 
Sbjct: 1   MEGRNLLRFLFFLVTGLFLLLFTWSNFPYLPSNKAELLDCTSFSPWCTSKSKPHLTTNP- 59

Query: 59  KEPAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQ 116
             P +    HH  +SD PHHPLDPLTV+EINRVRTIL+SH   K S  Y  H++ L +
Sbjct: 60  TNPTRGPRRHH--SSDVPHHPLDPLTVQEINRVRTILSSHAPLKASKRYTIHAVDLEE 115

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462275|ref|XP_003601419.1| Primary amine oxidase [Medicago truncatula] gi|355490467|gb|AES71670.1| Primary amine oxidase [Medicago truncatula]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 78/118 (66%), Gaps = 4/118 (3%)

Query: 1   MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSSWCTSKNRFQS-KPLK 59
           M++R+ ++FL F  GIA ++  TW +LP +     E  DC  +S WCTSKNRFQS  P+ 
Sbjct: 1   MDARNLLKFLVFSFGIALVILATWFHLPSS--FNKEALDCNIFSGWCTSKNRFQSSNPIH 58

Query: 60  EPAKSTSHHH-DHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQ 116
           +P+ ST     +H SD P HPLDPLT++E N+VR IL++H LFK+S  Y  +SI L +
Sbjct: 59  KPSFSTRRQQPNHESDEPRHPLDPLTIQEFNKVRAILSTHPLFKSSNSYTLNSIVLEE 116

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537059|ref|XP_002509596.1| Amine oxidase [copper-containing] precursor, putative [Ricinus communis] gi|223549495|gb|EEF50983.1| Amine oxidase [copper-containing] precursor, putative [Ricinus communis]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/122 (52%), Positives = 80/122 (65%), Gaps = 12/122 (9%)

Query: 1   MESRHYIRFLFFFVGIATLLAITWNNLPYAPP--DATEDF--DCTTYSSWCTSKNRFQS- 55
           MESR++IRFL  F+  + LL  TW NLPY PP   +T DF   C   S WCT   RFQ  
Sbjct: 1   MESRNFIRFLLIFLSGSLLLLFTWINLPYTPPPLTSTTDFLDSCAANSRWCT---RFQQP 57

Query: 56  -KPLKEPAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITL 114
              LK+P K T H H+  SD P HPLDPLT++E N+VRTIL SH+LFK+S P++ HS+ L
Sbjct: 58  KNILKKPPKPTRHRHE--SDLPTHPLDPLTIQEFNKVRTILKSHDLFKSS-PFSLHSVVL 114

Query: 115 TQ 116
            +
Sbjct: 115 EE 116

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class: N/A

Phylum: Streptophyta

>gi|5733089|gb|AAD49420.1|AF172681_1 amine oxidase [Canavalia lineata]

 Score = 99.4 bits (246), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 12/123 (9%)

Query: 1   MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATED--FDCTTYSSWCTSKNRFQS--K 56
           MESR+ +RFL   V +A +L +T   L ++P   +     DC  YS WC+SKNRF S  K
Sbjct: 1   MESRNLLRFLVLSVCVALVLLLT---LFHSPTSLSNKGVLDCNLYSGWCSSKNRFSSSTK 57

Query: 57  PL---KEPAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSIT 113
           P    K+P  S ++ ++H S+ P HPLDPLT++E N+VR IL++H LFK+   Y  HSI 
Sbjct: 58  PKVIKKQP--SFTYQNNHESEVPQHPLDPLTIQEFNKVRNILSTHPLFKSPSSYILHSIV 115

Query: 114 LTQ 116
           L +
Sbjct: 116 LDE 118

Source: Canavalia lineata

Species: Canavalia lineata

Genus: Canavalia

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459688|ref|XP_004147578.1| PREDICTED: primary amine oxidase-like [Cucumis sativus] gi|449506121|ref|XP_004162659.1| PREDICTED: primary amine oxidase-like [Cucumis sativus]

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 72/116 (62%), Gaps = 4/116 (3%)

Query: 1   MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSSWCTSKNRFQSKPLKE 60
           M +R Y+   F  +  A  L  TW +L   PP+  E  DC  YS WC+SK+   +    +
Sbjct: 1   MAARKYLLSSFLSLTTAFALFFTWLHLSSPPPNVAELLDCAAYSPWCSSKSHPTNLGRDQ 60

Query: 61  PAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQ 116
              + +  HDH+SDTPHHPLDPLTV EIN+ R+IL+SH LFK+S P++ HS+ L +
Sbjct: 61  ---NPTRRHDHSSDTPHHPLDPLTVTEINKARSILSSHPLFKSS-PFSIHSLVLEE 112

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534598|ref|XP_003535840.1| PREDICTED: primary amine oxidase-like [Glycine max]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 57/124 (45%), Positives = 77/124 (62%), Gaps = 15/124 (12%)

Query: 1   MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSSWCTSKNRFQS----- 55
           ME+++  RFL   +G+  +L +TW  LP       E  DC  YS WCTSKNRF S     
Sbjct: 1   MEAKNLWRFLVLSIGVVLVLLVTW--LP-----NKEALDCNLYSGWCTSKNRFYSSAHPN 53

Query: 56  KPLKEPAKSTSHHHD---HASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSI 112
            P+K+P+ ST HHH    H S+ P HPLDPLT++E N+VRTIL ++ LFK+S  Y  +S+
Sbjct: 54  NPIKKPSFSTYHHHKNQHHESEIPQHPLDPLTIQEFNKVRTILLNYPLFKSSSSYTLNSV 113

Query: 113 TLTQ 116
            L +
Sbjct: 114 VLEE 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255790|ref|NP_192966.5| copper amine oxidase family protein [Arabidopsis thaliana] gi|22654995|gb|AAM98089.1| AT4g12290/T4C9_130 [Arabidopsis thaliana] gi|28416507|gb|AAO42784.1| AT4g12290/T4C9_130 [Arabidopsis thaliana] gi|332657711|gb|AEE83111.1| copper amine oxidase family protein [Arabidopsis thaliana]

 Score = 95.9 bits (237), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 75/123 (60%), Gaps = 10/123 (8%)

Query: 1   MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSS--WCTSKN----RFQ 54
           M+ + + R +F  V    +++ T  N P+AP   T   DCT  SS   C S+N    + Q
Sbjct: 1   MDQKSFFRLIFLIVTAGFIISFTSTNFPHAP---TRLLDCTDSSSSPLCASRNFLFNKQQ 57

Query: 55  SKPL-KEPAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSIT 113
            +P+ K   K  + +HDH SDTP+HPLDPLTV EIN++R+IL+SH LF +  P+A H++ 
Sbjct: 58  PRPIPKHDPKPNTKNHDHVSDTPNHPLDPLTVSEINKIRSILSSHALFTSGTPHALHTVV 117

Query: 114 LTQ 116
           L +
Sbjct: 118 LEE 120

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809533|ref|XP_002872650.1| AT4g12290/T4C9_130 [Arabidopsis lyrata subsp. lyrata] gi|297318487|gb|EFH48909.1| AT4g12290/T4C9_130 [Arabidopsis lyrata subsp. lyrata]

 Score = 92.0 bits (227), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 7/123 (5%)

Query: 1   MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSS--WCTSKN----RFQ 54
           M+ + ++R +F  V    +L+ T     +AP   T   DCT  SS   C S+N    + Q
Sbjct: 1   MDQKSFLRLIFLIVTAGFILSFTSTYFSHAPSSTTGILDCTDSSSSPLCASRNFLFNKQQ 60

Query: 55  SKPL-KEPAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSIT 113
            +P+ K   K  + +HDH SDTP+HPLDPLTV EIN+VR+IL +H LF +  P+A H++ 
Sbjct: 61  PRPIPKHDPKPKTKNHDHFSDTPNHPLDPLTVVEINKVRSILNTHALFTSGTPHALHTVV 120

Query: 114 LTQ 116
           L +
Sbjct: 121 LEE 123

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557184|ref|XP_003546898.1| PREDICTED: primary amine oxidase-like [Glycine max]

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 60/89 (67%), Gaps = 8/89 (8%)

Query: 36  EDFDCTTYSSWCTSKNRFQS-----KPLKEPAKSTSHHHDH---ASDTPHHPLDPLTVKE 87
           E  DC  YS WCTSKNRF S      P+K+P+  +++HH+     S+ P HPLDPLT++E
Sbjct: 29  EALDCNLYSGWCTSKNRFYSSAHPNNPIKKPSSFSTYHHNQHHDESEIPEHPLDPLTIQE 88

Query: 88  INRVRTILTSHELFKNSFPYAFHSITLTQ 116
            N+VRTIL++H LFK+S  Y  +S+ L +
Sbjct: 89  FNKVRTILSNHPLFKSSSTYTLNSVVLEE 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2139069	741	AT4G12290 [Arabidopsis thalian	0.896	0.152	0.341	4.1e-12
TAIR|locus:2139039	460	AT4G12270 [Arabidopsis thalian	0.849	0.232	0.359	1.5e-09

TAIR|locus:2139069 AT4G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 42/123 (34%), Positives = 63/123 (51%)

Query:     1 MESRHYIRFLFFFVGIATLLAITWNNLPYAPPDATEDFDCTTYSS--WCTSKN----RFQ 54
             M+ + + R +F  V    +++ T  N P+AP   T   DCT  SS   C S+N    + Q
Sbjct:     1 MDQKSFFRLIFLIVTAGFIISFTSTNFPHAP---TRLLDCTDSSSSPLCASRNFLFNKQQ 57

Query:    55 SKPL-KEPAKSXXXXXXXXXXXXXXXLDPLTVKEINRVRTILTSHELFKNSFPYAFHSIT 113
              +P+ K   K                LDPLTV EIN++R+IL+SH LF +  P+A H++ 
Sbjct:    58 PRPIPKHDPKPNTKNHDHVSDTPNHPLDPLTVSEINKIRSILSSHALFTSGTPHALHTVV 117

Query:   114 LTQ 116
             L +
Sbjct:   118 LEE 120

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008131 "primary amine oxidase activity" evidence=IEA

GO:0009308 "amine metabolic process" evidence=IEA

GO:0048038 "quinone binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2139039 AT4G12270 [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 41/114 (35%), Positives = 57/114 (50%)

Query:    10 LFFFVGIAT-LLAITWNNLPYAPPDATEDFDCTTYSS--WCTSKNRFQSK---PL-KEPA 62
             LF  +  A  +L  T  N   AP    + FDCT  SS  +C S+N   +K   P+ K   
Sbjct:     9 LFLLITTACFILLFTSTNFSQAPSSTAKLFDCTKSSSSPFCASRNFLFNKNTRPISKNIP 68

Query:    63 KSXXXXXXXXXXXXXXXLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQ 116
             K+               LDPLTV EIN+VR+IL+SH LF +  P+  +S+ L +
Sbjct:    69 KTKPKNHDHVSDTPNHPLDPLTVMEINKVRSILSSHALFASRVPHLLNSVVLEE 122


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126       111   0.00091  102 3  11 22  0.41    30
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  138 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.60u 0.11s 10.71t   Elapsed:  00:00:03
  Total cpu time:  10.60u 0.11s 10.71t   Elapsed:  00:00:03
  Start:  Fri May 10 01:31:25 2013   End:  Fri May 10 01:31:28 2013

GO:0005507 "copper ion binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008131 "primary amine oxidase activity" evidence=IEA

GO:0009308 "amine metabolic process" evidence=IEA

GO:0048038 "quinone binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00001079001	RecName- Full=Copper amine oxidase; EC=1.4.3.6; (727 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	ODC	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (134 aa)							•		0.483
	ABP1	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (179 aa)							•		0.480
	APX	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (245 aa)							•		0.480

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
pfam02727	86	pfam02727, Cu_amine_oxidN2, Copper amine oxidase,	5e-08
PRK11504	647	PRK11504, tynA, tyramine oxidase; Provisional	0.003

>gnl|CDD|145726 pfam02727, Cu_amine_oxidN2, Copper amine oxidase, N2 domain

 Score = 46.6 bits (111), Expect = 5e-08
 Identities = 21/37 (56%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 78  HPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITL 114
           HPLDPLT  EIN+ RTIL S  LF       FH I L
Sbjct: 1   HPLDPLTAFEINKARTILKSSALFTGP-KNRFHYIEL 36

This domain is the first or second structural domain in copper amine oxidases, it is known as the N2 domain. Its function is uncertain. The catalytic domain can be found in pfam01179. Copper amine oxidases are a ubiquitous and novel group of quinoenzymes that catalyze the oxidative deamination of primary amines to the corresponding aldehydes, with concomitant reduction of molecular oxygen to hydrogen peroxide. The enzymes are dimers of identical 70-90 kDa subunits, each of which contains a single copper ion and a covalently bound cofactor formed by the post-translational modification of a tyrosine side chain to 2,4,5-trihydroxyphenylalanine quinone (TPQ). Length = 86

>gnl|CDD|236919 PRK11504, tynA, tyramine oxidase; Provisional

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 72  ASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITL 114
            +    HPLDPLT  EI     IL +  L   S    F SI L
Sbjct: 8   TAAAVSHPLDPLTAAEIEAAVAILRAEGLLGEST--RFVSIEL 48

Length = 647

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
PF02727	86	Cu_amine_oxidN2: Copper amine oxidase, N2 domain;	99.44
PRK11504	647	tynA tyramine oxidase; Provisional	99.17
PRK14696	721	tynA tyramine oxidase; Provisional	99.11
PLN02566	646	amine oxidase (copper-containing)	99.07
COG3733	654	TynA Cu2+-containing amine oxidase [Secondary meta	98.98
KOG1186	670	consensus Copper amine oxidase [Secondary metaboli	98.47

>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines

Probab=99.44  E-value=2.2e-14  Score=99.22  Aligned_cols=46  Identities=35%  Similarity=0.472  Sum_probs=39.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeEEEEecCCCCChhhhh
Q 035637           78 HPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELE  124 (126)
Q Consensus        78 HPLDPLT~~EI~~A~~ILr~~~~~~~~~~~rF~~V~L~EP~K~evl~  124 (126)
                      |||||||++||++|++||++++... +.+++|.+|+|+||+|++|+.
T Consensus         1 HPLdpLt~~Ei~~a~~il~~~~~~~-~~~~~F~~I~L~EP~K~~vl~   46 (86)
T PF02727_consen    1 HPLDPLTAEEIQAAAAILRDAHPLA-GEKNRFRSIELQEPPKAEVLA   46 (86)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHTGTT-TTSEEEEEEEEE---HHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHhccccC-CCCeEEEEEEeCCCCHHHHhc
Confidence            9999999999999999999998332 579999999999999999985

There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N2) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1W2Z_A 1KSI_B 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 3SX1_A ....

>PRK11504 tynA tyramine oxidase; Provisional

Probab=99.17  E-value=3.6e-11  Score=109.11  Aligned_cols=51  Identities=33%  Similarity=0.445  Sum_probs=45.5

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeEEEEecCCCCChhhhh
Q 035637           72 ASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELE  124 (126)
Q Consensus        72 ~~~~~~HPLDPLT~~EI~~A~~ILr~~~~~~~~~~~rF~~V~L~EP~K~evl~  124 (126)
                      ...++.|||||||++||++|++|||+++++  +..++|++|+|+||+|++|++
T Consensus         8 ~~~~~~HPLdpLt~~Ei~~a~~iv~~~~~~--~~~~~F~~i~L~EP~K~~v~~   58 (647)
T PRK11504          8 TAAAVSHPLDPLTAAEIEAAVAILRAEGLL--GESTRFVSIELAEPPKAEVLA   58 (647)
T ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHhcccc--CCceEEEEeeccCCCHHHHHh
Confidence            345566999999999999999999999876  468999999999999999986

>PRK14696 tynA tyramine oxidase; Provisional

Probab=99.11  E-value=8.2e-11  Score=107.90  Aligned_cols=50  Identities=24%  Similarity=0.310  Sum_probs=43.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeEEEEecCCCCChhhhh
Q 035637           73 SDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELE  124 (126)
Q Consensus        73 ~~~~~HPLDPLT~~EI~~A~~ILr~~~~~~~~~~~rF~~V~L~EP~K~evl~  124 (126)
                      .+.+.|||||||++||++|++||+++++.  +.+++|++|+|+||+|++|++
T Consensus        83 ~~~~~HPLdpLt~~Ei~~a~~iv~~~~~~--~~~~~F~~i~L~EP~K~~v~~  132 (721)
T PRK14696         83 VEKRPHPLNALTADEIKQAVEIVKASADF--KPNTRFTEISLKEPDKEAVWA  132 (721)
T ss_pred             ecCCCCCCCCCCHHHHHHHHHHHHhcccc--CCceEEEEEEecCCCcHHHHH
Confidence            34456999999999999999999999754  357999999999999999875

>PLN02566 amine oxidase (copper-containing)

Probab=99.07  E-value=1.7e-10  Score=104.74  Aligned_cols=47  Identities=34%  Similarity=0.482  Sum_probs=41.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeEEEEecCCCCChhhhh
Q 035637           77 HHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELE  124 (126)
Q Consensus        77 ~HPLDPLT~~EI~~A~~ILr~~~~~~~~~~~rF~~V~L~EP~K~evl~  124 (126)
                      .|||||||++||++|++||+++++.. ...++|++|+|+||+|++|+.
T Consensus        21 ~HPLdpLs~~Ei~~a~~iv~~~~~~~-~~~~~F~~i~L~EP~K~~v~~   67 (646)
T PLN02566         21 YHPLDPLNPQEINKIRLIVQKSHLGN-LPNLTFHFLDLEEPEKRDVLK   67 (646)
T ss_pred             CCCCCCCCHHHHHHHHHHHHhhccCC-CCceEEEEEEccCCChHHHHh
Confidence            49999999999999999999998521 247999999999999999875

>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.98  E-value=6.2e-10  Score=100.17  Aligned_cols=50  Identities=32%  Similarity=0.447  Sum_probs=45.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeEEEEecCCCCChhhhhc
Q 035637           74 DTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELEQ  125 (126)
Q Consensus        74 ~~~~HPLDPLT~~EI~~A~~ILr~~~~~~~~~~~rF~~V~L~EP~K~evl~~  125 (126)
                      +...|||||||++||..|++|||+...+  ++.++|..|+|.||+|++|++-
T Consensus        26 k~~shPLdpLt~~Eik~aVEivr~e~~~--~~~~~F~~VtL~eP~K~~v~~f   75 (654)
T COG3733          26 KERSHPLDPLTADEIKQAVEIVRAEADF--KKNFAFTEVTLLEPDKQEVLAF   75 (654)
T ss_pred             cccCCCCCccCHHHHHHHHHHHHhhccc--CCceeeEEEEecCCchHHHHHH
Confidence            3356999999999999999999999987  4789999999999999999874

>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.47  E-value=2.9e-07  Score=84.23  Aligned_cols=60  Identities=25%  Similarity=0.320  Sum_probs=54.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeEEEEecCCCCChhhh
Q 035637           64 STSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPEL  123 (126)
Q Consensus        64 ~~~~~~~~~~~~~~HPLDPLT~~EI~~A~~ILr~~~~~~~~~~~rF~~V~L~EP~K~evl  123 (126)
                      ..++.++++.+.+.|||||||+.||++++.||+..++++......|++|.|.||.|+-++
T Consensus        14 ~~~~~~~~s~~~p~hPlDPLte~EL~kvr~iL~~~d~~s~~~~~~~~av~l~eP~K~~vl   73 (670)
T KOG1186|consen   14 LGPGLVSASQERPSHPLDPLTELELPKVAAILAHLDPGSPHPAFEAVAVVLFEPQKQPVL   73 (670)
T ss_pred             cccccccccCCCCCCCcCccchhhhhHHHHHHhhcccCCCCCceEEEEEEecCCCcCccc
Confidence            568889999999999999999999999999999998876557889999999999998776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
3sxx_A	692	Peroxisomal primary amine oxidase; oxidoreductase,	1e-06
1w6g_A	646	Phenylethylamine oxidase; copper containing, metal	5e-06
1tu5_A	746	Copper amine oxidase, liver isozyme; oxidoreductas	7e-06
1ksi_A	642	Copper amine oxidase; PEA seedling, oxidoreductase	1e-05
1w7c_A	747	Lysyl oxidase; AMNE oxidase, copper, oxidoreductas	4e-05
3loy_A	633	Copper amine oxidase; TPQ, oxidoreductase; HET: TP	6e-05
3hi7_A	731	Amiloride-sensitive amine oxidase; oxidoreductase,	1e-04
3pgb_A	797	Putative uncharacterized protein; oxidoreductase,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A* Length = 692

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 58  LKEPAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITL 114
           L++ A   +     A   P HPLDPL+  EI      + S+   K      F+++TL
Sbjct: 4   LRQIASQATAAS-AAPARPAHPLDPLSTAEIKAATNTVKSYFAGKKIS---FNTVTL 56

>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ... Length = 646

 Score = 43.3 bits (101), Expect = 5e-06
 Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 72  ASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITL 114
           ++     P    +  EI+ V+ IL +  L           + +
Sbjct: 2   STIQTASPFRLASAGEISEVQGILRTAGLL--GPEKRIAYLGV 42

>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A* Length = 746

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 55 SKPLKEPAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSH 98
          S P + P++S S                L+ +E+  V + LT  
Sbjct: 19 SLPPRCPSRSPSDQ-PWTHPDQSQLFADLSREELTTVMSFLTQQ 61

>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A* Length = 642

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 77  HHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITL 114
            HPLDPLT +E   V+TI+ +     N+   AFH I L
Sbjct: 2   QHPLDPLTKEEFLAVQTIVQNKYPISNN-RLAFHYIGL 38

>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A* Length = 747

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 8/59 (13%), Positives = 15/59 (25%), Gaps = 5/59 (8%)

Query: 61  PAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYA-----FHSITL 114
            A+  S+ +        +    L  +E+  V  +L S                   I  
Sbjct: 2   SAECVSNENVEIEAPKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIET 60

>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta} Length = 633

 Score = 40.2 bits (93), Expect = 6e-05
 Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 2/37 (5%)

Query: 78  HPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITL 114
           HP DP++  E+     ++             F  I  
Sbjct: 2   HPYDPISDAELQLTSQLIKDATKGPER--PHFIQIDR 36

>3hi7_A Amiloride-sensitive amine oxidase; oxidoreductase, copper amine oxidase, topaquinone, TPQ, DIAM oxidase, DAO, human, glycoprotein, heparin-binding; HET: TPQ NAG BMA; 1.80A {Homo sapiens} PDB: 3hig_A* 3hii_A* 3k5t_A* 3mph_A* Length = 731

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 5/31 (16%), Positives = 10/31 (32%)

Query: 71  HASDTPHHPLDPLTVKEINRVRTILTSHELF 101
                       L+ +E+  V + L S +  
Sbjct: 4   GTLPRKAGVFSDLSNQELKAVHSFLWSKKEL 34

>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN; 2.45A {Emericella nidulans} Length = 797

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 12/78 (15%), Positives = 19/78 (24%), Gaps = 9/78 (11%)

Query: 44  SSWCTSKNRFQSKPLKEPAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFK- 102
           +   T ++R  +     P + T      A     +    LT  E   V   L        
Sbjct: 34  NQHITHQSRPYTNEYASPCQITPPQEIKAP--KENVWYGLTDDETADVAKWLFGRPELNL 91

Query: 103 ------NSFPYAFHSITL 114
                   +      I L
Sbjct: 92  TTTENAGEWDNTIALIEL 109

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 36.8 bits (84), Expect = 8e-04
 Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 25/114 (21%)

Query: 2   ESRHYIRFLFFF---VGI-ATLLAITWNNLPYAPPDATEDFDCTTYSSWCTSKNRFQSKP 57
           E R     L  F     I   LL++ W ++                       N+     
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK---SDVMVVV-----------NKLHKYS 415

Query: 58  L--KEPAKSTSHHHDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAF 109
           L  K+P +ST        +      +      ++  R+I+  + + K       
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLEN---EYALH--RSIVDHYNIPKTFDSDDL 464

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
3sxx_A	692	Peroxisomal primary amine oxidase; oxidoreductase,	99.2
1ksi_A	642	Copper amine oxidase; PEA seedling, oxidoreductase	99.13
3loy_A	633	Copper amine oxidase; TPQ, oxidoreductase; HET: TP	99.09
1spu_A	727	Copper amine oxidase; oxidoreductase, TPQ, peripla	99.05
1w6g_A	646	Phenylethylamine oxidase; copper containing, metal	99.0
1w7c_A	747	Lysyl oxidase; AMNE oxidase, copper, oxidoreductas	97.97
1tu5_A	746	Copper amine oxidase, liver isozyme; oxidoreductas	97.74

>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET: GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A* 3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A 1a2v_A*

Probab=99.20  E-value=1.2e-11  Score=111.60  Aligned_cols=53  Identities=26%  Similarity=0.396  Sum_probs=45.4

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeEEEEecCCCCChhhhh
Q 035637           69 HDHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELE  124 (126)
Q Consensus        69 ~~~~~~~~~HPLDPLT~~EI~~A~~ILr~~~~~~~~~~~rF~~V~L~EP~K~evl~  124 (126)
                      -+..+....|||||||++||++|++||+++++   +..++|++|+|+||+|++|++
T Consensus        14 ~~~~~~~~~HPLDpLs~~Ei~~a~~iv~~~~~---~~~~~F~~i~L~EP~K~~v~~   66 (692)
T 3sxx_A           14 ASAAPARPAHPLDPLSTAEIKAATNTVKSYFA---GKKISFNTVTLREPARKAYIQ   66 (692)
T ss_dssp             -CCSCCCCSSTTSCCCHHHHHHHHHHHHHHTT---TSCEEEEEEEEECCCHHHHHH
T ss_pred             cCCCCCCCCCCCCCCCHHHHHHHHHHHHhhCC---CCCcEEEEEECCCCCHHHHHH
Confidence            33444556799999999999999999999876   478999999999999999985

>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG; 2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w2z_A*

Probab=99.13  E-value=3.8e-11  Score=107.43  Aligned_cols=47  Identities=36%  Similarity=0.441  Sum_probs=42.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeEEEEecCCCCChhhhh
Q 035637           77 HHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELE  124 (126)
Q Consensus        77 ~HPLDPLT~~EI~~A~~ILr~~~~~~~~~~~rF~~V~L~EP~K~evl~  124 (126)
                      .|||||||++||++|++||+++++++ +..++|++|+|+||+|++|++
T Consensus         2 ~HPldpLs~~Ei~~a~~iv~~~~~~~-~~~~~F~~i~L~EP~K~~v~~   48 (642)
T 1ksi_A            2 QHPLDPLTKEEFLAVQTIVQNKYPIS-NNRLAFHYIGLDDPEKDHVLR   48 (642)
T ss_dssp             CSTTCCCCHHHHHHHHHHHHHHSCTT-TCCEEEEEEEECCCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHhcccCC-CCceEEEEEECCCCCHHHHHH
Confidence            59999999999999999999998753 457899999999999999985

>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A {Pichia angusta}

Probab=99.09  E-value=6.2e-11  Score=106.06  Aligned_cols=46  Identities=15%  Similarity=0.149  Sum_probs=41.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeEEEEecCCCCChhhhh
Q 035637           77 HHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELE  124 (126)
Q Consensus        77 ~HPLDPLT~~EI~~A~~ILr~~~~~~~~~~~rF~~V~L~EP~K~evl~  124 (126)
                      -|||||||++||++|++||+++++.  +..++|++|+|+||+|++|++
T Consensus         1 ~HPLdpLs~~Ei~~a~~iv~~~~~~--~~~~~F~~i~L~EP~K~~v~~   46 (633)
T 3loy_A            1 VHPYDPISDAELQLTSQLIKDATKG--PERPHFIQIDRLDPPKKDMIR   46 (633)
T ss_dssp             CCTTCCCCHHHHHHHHHHHHHHCCS--SSCEEEEEEEECCCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHhhccC--CCCcEEEEEECCCCCHHHHHH
Confidence            3999999999999999999998762  368999999999999999985

>1spu_A Copper amine oxidase; oxidoreductase, TPQ, periplasmic, signal; HET: PAQ; 2.00A {Escherichia coli} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 d.82.1.1 PDB: 1d6y_A* 1d6u_A* 1d6z_A* 2wgq_A 1oac_A* 1dyu_A* 2w0q_A* 2wo0_A* 2wof_A* 2woh_A* 1lvn_A* 1jrq_A* 1qak_A* 1qaf_A* 1qal_A*

Probab=99.05  E-value=1.3e-10  Score=105.02  Aligned_cols=53  Identities=23%  Similarity=0.270  Sum_probs=46.4

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeEEEEecCCCCChhhhh
Q 035637           70 DHASDTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELE  124 (126)
Q Consensus        70 ~~~~~~~~HPLDPLT~~EI~~A~~ILr~~~~~~~~~~~rF~~V~L~EP~K~evl~  124 (126)
                      .+++....|||||||++||++|++||+++..+  +++++|.+|+|+||+|++||+
T Consensus        86 T~~~~~~~HPLdpLs~~Ei~~a~~il~~~~~~--~~~~~F~~i~L~eP~K~~vl~  138 (727)
T 1spu_A           86 TFQVEKRPHPLNALTADEIKQAVEIVKASADF--KPNTRFTEISLLPPDKEAVWA  138 (727)
T ss_dssp             TEECCSSCCTTCCCCHHHHHHHHHHHHTSTTC--CTTCEEEEEEEECCCHHHHHH
T ss_pred             EEeecccCCCCCcCCHHHHHHHHHHHHhcccC--CCCcEEEEEEecCCCHHHHHh
Confidence            35556678999999999999999999998765  468999999999999999985

>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding, oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL; 1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A* 1iqx_A* ...

Probab=99.00  E-value=3.5e-10  Score=101.32  Aligned_cols=46  Identities=15%  Similarity=0.143  Sum_probs=40.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeEEEEecCCCCChh
Q 035637           74 DTPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCP  121 (126)
Q Consensus        74 ~~~~HPLDPLT~~EI~~A~~ILr~~~~~~~~~~~rF~~V~L~EP~K~e  121 (126)
                      ....|||||||++||++|++||++++++  +..++|++|+|+||+|++
T Consensus         4 ~~~~HPldpLs~~Ei~~a~~iv~~~~~~--~~~~~F~~i~L~eP~K~~   49 (646)
T 1w6g_A            4 IQTASPFRLASAGEISEVQGILRTAGLL--GPEKRIAYLGVLDPARGA   49 (646)
T ss_dssp             ---CCTTCCCCHHHHHHHHHHHHHTTCC--CTTEEEEEEEECCCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcccC--CCCcEEEEEEccCCchhh
Confidence            3456999999999999999999999876  468999999999999986

>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein, topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A {Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB: 1rky_A* 1n9e_A*

Probab=97.97  E-value=6.4e-06  Score=75.05  Aligned_cols=50  Identities=14%  Similarity=0.079  Sum_probs=40.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCCCCC--CCe---eEEEEecCCCCChhhhh
Q 035637           75 TPHHPLDPLTVKEINRVRTILTSHELFKNS--FPY---AFHSITLTQKITCPELE  124 (126)
Q Consensus        75 ~~~HPLDPLT~~EI~~A~~ILr~~~~~~~~--~~~---rF~~V~L~EP~K~evl~  124 (126)
                      ...||||+||++||++|+++|++...++..  ..+   .|.+|+|.||+|++||+
T Consensus        16 ~~~~p~~~Ls~~E~~aV~~~L~~~l~l~~~~~~~~~dN~i~~VeL~~P~K~~vL~   70 (747)
T 1w7c_A           16 PKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALT   70 (747)
T ss_dssp             SSCCTTCCCCHHHHHHHHHHHHHHSCCCCGGGCCTTSEEEEEEEEECCCHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHhccCCCccccCccccceEEEEECcCCCHHHHHh
Confidence            346999999999999999999888324311  234   68999999999999985

>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme, TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A* 3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*

Probab=97.74  E-value=2.2e-05  Score=71.54  Aligned_cols=50  Identities=18%  Similarity=0.205  Sum_probs=37.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcC---CCCCC----CCeeEEEEecCCCCChhhhh
Q 035637           75 TPHHPLDPLTVKEINRVRTILTSHE---LFKNS----FPYAFHSITLTQKITCPELE  124 (126)
Q Consensus        75 ~~~HPLDPLT~~EI~~A~~ILr~~~---~~~~~----~~~rF~~V~L~EP~K~evl~  124 (126)
                      ...||||+||++||++++++|.+..   +..+.    .+-.+.+|+|.||+|++||+
T Consensus        38 ~~~~~~~~Ls~~E~~~V~~~L~~~~~l~L~~~~~a~~~dn~i~~IeL~~P~K~~vL~   94 (746)
T 1tu5_A           38 DQSQLFADLSREELTTVMSFLTQQLGPDLVDAAQARPSDNCVFSVELQLPPKAAALA   94 (746)
T ss_dssp             ---CCSSCCCHHHHHHHHHHHHHHHCSSCBCTTTCCTTSEEEEEEEEECCCHHHHHH
T ss_pred             CCCCcCCCCCHHHHHHHHHHHhccCccCccccccCCccccEEEEEECCCCCHHHhhh
Confidence            4569999999999999999998775   22211    12457789999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d1w2za2	93	d.17.2.1 (A:6-98) Copper amine oxidase, domains 1	7e-08
d2oqea2	98	d.17.2.1 (A:18-115) Copper amine oxidase, domains	1e-07
d1d6za2	95	d.17.2.1 (A:91-185) Copper amine oxidase, domains	4e-07
d1w6ga2	88	d.17.2.1 (A:9-96) Copper amine oxidase, domains 1	5e-06

>d1w2za2 d.17.2.1 (A:6-98) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Amine oxidase N-terminal region
family: Amine oxidase N-terminal region
domain: Copper amine oxidase, domains 1 and 2
species: Pea seedling (Pisum sativum) [TaxId: 3888]

 Score = 44.9 bits (106), Expect = 7e-08
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 77  HHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITL 114
            HPLDPLT +E   V+TI+ +     N+   AFH I L
Sbjct: 2   QHPLDPLTKEEFLAVQTIVQNKYPISNN-RLAFHYIGL 38

>d2oqea2 d.17.2.1 (A:18-115) Copper amine oxidase, domains 1 and 2 {Yeast (Hansenula polymorpha) [TaxId: 4905]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Amine oxidase N-terminal region
family: Amine oxidase N-terminal region
domain: Copper amine oxidase, domains 1 and 2
species: Yeast (Hansenula polymorpha) [TaxId: 4905]

 Score = 44.1 bits (104), Expect = 1e-07
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 76  PHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITL 114
           P HPLDPL+  EI      + S+   K      F+++TL
Sbjct: 4   PAHPLDPLSTAEIKAATNTVKSYFAGKKIS---FNTVTL 39

>d1d6za2 d.17.2.1 (A:91-185) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]} Length = 95

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Amine oxidase N-terminal region
family: Amine oxidase N-terminal region
domain: Copper amine oxidase, domains 1 and 2
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (101), Expect = 4e-07
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 78  HPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITL 114
           HPL+ LT  EI +   I+ +   FK +    F  I+L
Sbjct: 4   HPLNALTADEIKQAVEIVKASADFKPN--TRFTEISL 38

>d1w6ga2 d.17.2.1 (A:9-96) Copper amine oxidase, domains 1 and 2 {Arthrobacter globiformis [TaxId: 1665]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Amine oxidase N-terminal region
family: Amine oxidase N-terminal region
domain: Copper amine oxidase, domains 1 and 2
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 39.9 bits (93), Expect = 5e-06
 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 78  HPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITL 114
            P    +  EI+ V+ IL +  L           + +
Sbjct: 2   SPFRLASAGEISEVQGILRTAGLLGPE--KRIAYLGV 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d1w2za2	93	Copper amine oxidase, domains 1 and 2 {Pea seedlin	99.61
d1d6za2	95	Copper amine oxidase, domains 1 and 2 {Escherichia	99.58
d2oqea2	98	Copper amine oxidase, domains 1 and 2 {Yeast (Hans	99.55
d1w6ga2	88	Copper amine oxidase, domains 1 and 2 {Arthrobacte	99.53
d1w7ca2	127	Lysyl oxidase PplO, domains 1 and 2 {Yeast (Pichia	86.98

>d1w2za2 d.17.2.1 (A:6-98) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Amine oxidase N-terminal region
family: Amine oxidase N-terminal region
domain: Copper amine oxidase, domains 1 and 2
species: Pea seedling (Pisum sativum) [TaxId: 3888]

Probab=99.61  E-value=3e-16  Score=108.20  Aligned_cols=48  Identities=35%  Similarity=0.420  Sum_probs=43.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeEEEEecCCCCChhhhh
Q 035637           76 PHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELE  124 (126)
Q Consensus        76 ~~HPLDPLT~~EI~~A~~ILr~~~~~~~~~~~rF~~V~L~EP~K~evl~  124 (126)
                      ..|||||||++||++|++||+++++++ +++++|++|+|+||+|++|++
T Consensus         1 v~HPLDpLs~~EI~~a~~iv~~~~~~~-~~~~~F~~I~L~EP~K~~vl~   48 (93)
T d1w2za2           1 VQHPLDPLTKEEFLAVQTIVQNKYPIS-NNRLAFHYIGLDDPEKDHVLR   48 (93)
T ss_dssp             CCCTTCCCCHHHHHHHHHHHHHHSCTT-TCCEEEEEEEECCCCHHHHHH
T ss_pred             CcCCCCCCCHHHHHHHHHHHHhhcCCC-CCceEEEEeeccCCCHHHHHh
Confidence            369999999999999999999998764 457999999999999999985

>d1d6za2 d.17.2.1 (A:91-185) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Amine oxidase N-terminal region
family: Amine oxidase N-terminal region
domain: Copper amine oxidase, domains 1 and 2
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=6.6e-16  Score=106.59  Aligned_cols=46  Identities=26%  Similarity=0.306  Sum_probs=42.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeEEEEecCCCCChhhhh
Q 035637           77 HHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELE  124 (126)
Q Consensus        77 ~HPLDPLT~~EI~~A~~ILr~~~~~~~~~~~rF~~V~L~EP~K~evl~  124 (126)
                      +|||||||++||++|++||+++..+  +.+++|++|+|.||+|++|++
T Consensus         3 PHPLDpLs~~EI~~a~~ivr~~~~~--~~~~~F~~i~L~EP~K~~v~~   48 (95)
T d1d6za2           3 PHPLNALTADEIKQAVEIVKASADF--KPNTRFTEISLLPPDKEAVWA   48 (95)
T ss_dssp             CCTTCCCCHHHHHHHHHHHHTSTTC--CTTCEEEEEEEECCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHhccCC--CCCeEEEEEEecCCChHHHHh
Confidence            5999999999999999999987765  578999999999999999985

>d2oqea2 d.17.2.1 (A:18-115) Copper amine oxidase, domains 1 and 2 {Yeast (Hansenula polymorpha) [TaxId: 4905]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Amine oxidase N-terminal region
family: Amine oxidase N-terminal region
domain: Copper amine oxidase, domains 1 and 2
species: Yeast (Hansenula polymorpha) [TaxId: 4905]

Probab=99.55  E-value=2.2e-15  Score=104.09  Aligned_cols=47  Identities=28%  Similarity=0.436  Sum_probs=43.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeEEEEecCCCCChhhhh
Q 035637           75 TPHHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELE  124 (126)
Q Consensus        75 ~~~HPLDPLT~~EI~~A~~ILr~~~~~~~~~~~rF~~V~L~EP~K~evl~  124 (126)
                      .+.|||||||++||++|++|||+++.   +++++|++|+|.||+|++|++
T Consensus         3 ~p~HPLdpLt~~Ei~~a~~ivr~~~~---~~~~~F~~i~L~EP~K~~vl~   49 (98)
T d2oqea2           3 RPAHPLDPLSTAEIKAATNTVKSYFA---GKKISFNTVTLREPARKAYIQ   49 (98)
T ss_dssp             CCSSTTSCCCHHHHHHHHHHHHHHTT---TSCEEEEEEEEECCCHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC---CCCeEEEEeeccCCCHHHHHh
Confidence            46799999999999999999999876   578999999999999999975

>d1w6ga2 d.17.2.1 (A:9-96) Copper amine oxidase, domains 1 and 2 {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Amine oxidase N-terminal region
family: Amine oxidase N-terminal region
domain: Copper amine oxidase, domains 1 and 2
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.53  E-value=4.3e-15  Score=101.88  Aligned_cols=46  Identities=17%  Similarity=0.175  Sum_probs=42.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeEEEEecCCCCChhhhh
Q 035637           77 HHPLDPLTVKEINRVRTILTSHELFKNSFPYAFHSITLTQKITCPELE  124 (126)
Q Consensus        77 ~HPLDPLT~~EI~~A~~ILr~~~~~~~~~~~rF~~V~L~EP~K~evl~  124 (126)
                      .|||||||++||++|++|+|+++.+  +++++|++|+|.||+|++++.
T Consensus         1 shPLdpLs~~Ei~~a~~ilr~~~~~--~~~~~F~~v~L~EP~K~~v~~   46 (88)
T d1w6ga2           1 ASPFRLASAGEISEVQGILRTAGLL--GPEKRIAYLGVLDPARGAGSE   46 (88)
T ss_dssp             CCTTCCCCHHHHHHHHHHHHHTTCC--CTTEEEEEEEECCCCSCCSSS
T ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCC--CCCeEEEEEEeeCCChhHccC
Confidence            4999999999999999999999987  578999999999999998863

>d1w7ca2 d.17.2.1 (A:43-169) Lysyl oxidase PplO, domains 1 and 2 {Yeast (Pichia pastoris) [TaxId: 4922]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: Amine oxidase N-terminal region
family: Amine oxidase N-terminal region
domain: Lysyl oxidase PplO, domains 1 and 2
species: Yeast (Pichia pastoris) [TaxId: 4922]

Probab=86.98  E-value=0.4  Score=33.59  Aligned_cols=47  Identities=15%  Similarity=0.052  Sum_probs=35.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCCCCCC-----CeeEEEEecCCCCChhhhh
Q 035637           78 HPLDPLTVKEINRVRTILTSHELFKNSF-----PYAFHSITLTQKITCPELE  124 (126)
Q Consensus        78 HPLDPLT~~EI~~A~~ILr~~~~~~~~~-----~~rF~~V~L~EP~K~evl~  124 (126)
                      --++.||++|+..+++.|.+.-.+....     +=..-.|+|.=|.|+++|+
T Consensus        17 nv~adLt~~E~~aV~~~L~~~lnLt~~~~a~~~dN~I~~Iell~P~K~dvL~   68 (127)
T d1w7ca2          17 NIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALT   68 (127)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHHSCCCCGGGCCTTSEEEEEEEEECCCHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHhcCCCcccccCCcccceEEEEEeecCCHHHHHH
Confidence            4799999999999999998654332111     1135589999999999986