Citrus Sinensis ID: 035652

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPRIFLSLCQVIFFLSSDYVAHSYCLNITTPELG
Secondary Structure (PSIPRED)
cHHHHHHccccccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccEEccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccccHccHHHHHHccccccccccccccccccEEEEEHHHHEEEEcccHEEEEEEEcccccccc
Coil and Loop (DISEMBL)
ieflrgylnlpseivpatlkkqakpaggrpfggpggdrprIFLSLCQVIFFLSsdyvahsyclnittpelg
Flexible Loop (DISEMBL)
ieflrgylnlpseiVPATlkkqakpaggrPFGGPGGDRPRIFLSLCQVIFFLSSDYVAHSYCLNITTPELG
Low Complexity Region (SEG)
IEFLRGYLNLPSEIVPATLKKQAKPAggrpfggpggdrprIFLSLCQVIFFLSSDYVAHSYCLNITTPELG
Disordered region (IsUnstruct)
******YLN*****************************PRIFLSLCQVIFFLSSDYVAHSYCLNIT*****
Disordered Region (DISOPRED)
IEFLRGYLNLPSEIVPA*************************LSLCQVIFFLSSDYVAHSYCLNITTPE**
Disordered Region (DISEMBL)
IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPRIFLSLCQVIFFLSSDYVAHSYCLNITTPELG
Disordered Region (DISPRO)
IEFLRGYLNLPSEIVPATLKKQ*************GDRPRIFLSLCQVIFFLSSDYVAHSYCLNITT****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPRIFLSLCQVIFFLSSDYVAHSYCLNITTPELG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
Q9AYP4	183	40S ribosomal protein S10	yes	no	0.563	0.218	0.584	2e-06
Q9FFS8	180	40S ribosomal protein S10	yes	no	0.422	0.166	0.838	2e-06
P63326	165	40S ribosomal protein S10	no	no	0.577	0.248	0.558	8e-05
P63325	165	40S ribosomal protein S10	yes	no	0.577	0.248	0.558	8e-05
Q9LTF2	179	40S ribosomal protein S10	no	no	0.577	0.229	0.607	0.0001
Q9SW09	177	40S ribosomal protein S10	no	no	0.577	0.231	0.588	0.0002
O77302	156	40S ribosomal protein S10	N/A	no	0.577	0.262	0.487	0.0003
Q90YR4	166	40S ribosomal protein S10	N/A	no	0.549	0.234	0.525	0.0003

>sp|Q9AYP4|RS10_ORYSJ 40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 32/53 (60%), Gaps = 13/53 (24%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPG------------GDRPRI 41
           IE LR YLNLPSEIVPATLKK A+P  GRPFG               GDRPR 
Sbjct: 73  IEHLRNYLNLPSEIVPATLKKSARPP-GRPFGSGPPGDRPRGPPRFEGDRPRF 124

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FFS8|RS102_ARATH 40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/31 (83%), Positives = 27/31 (87%), Gaps = 1/31 (3%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPF 31
           I+FLR YLNLPSEIVPATLKKQ KP  GRPF
Sbjct: 74  IDFLRTYLNLPSEIVPATLKKQQKPL-GRPF 103

Arabidopsis thaliana (taxid: 3702)

>sp|P63326|RS10_RAT 40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 2/43 (4%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPF-GGPGGDRPRIF 42
           I++LR YL+LP EIVPATL++ ++P  GRP   GP G+RP  F
Sbjct: 76  IQYLRDYLHLPPEIVPATLRR-SRPETGRPRPKGPEGERPARF 117

Component of the 40S ribosomal subunit.

Rattus norvegicus (taxid: 10116)

>sp|P63325|RS10_MOUSE 40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 2/43 (4%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPF-GGPGGDRPRIF 42
           I++LR YL+LP EIVPATL++ ++P  GRP   GP G+RP  F
Sbjct: 76  IQYLRDYLHLPPEIVPATLRR-SRPETGRPRPKGPEGERPARF 117

Component of the 40S ribosomal subunit.

Mus musculus (taxid: 10090)

>sp|Q9LTF2|RS103_ARATH 40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 33/51 (64%), Gaps = 10/51 (19%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFG-------GP---GGDRPRI 41
           IEFLR YLNLPS++VPATLKK AKP G    G       GP   GGDRPR 
Sbjct: 73  IEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRPRF 123

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SW09|RS101_ARATH 40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/51 (58%), Positives = 32/51 (62%), Gaps = 10/51 (19%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAK--------PAGGRPFGGP--GGDRPRI 41
           IEFLR YLNLPS++VPATLKK AK        P G R  G P   GDRPR 
Sbjct: 73  IEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRPRF 123

Arabidopsis thaliana (taxid: 3702)

>sp|O77302|RS10_LUMRU 40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPRI 41
           I++LR +L+LP EIVPATLK+Q +P   RP    G  R ++
Sbjct: 73  IQYLRDFLHLPPEIVPATLKRQTRPEAARPRPKEGAPRAQV 113

Lumbricus rubellus (taxid: 35632)

>sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 OS=Ictalurus punctatus GN=rps10 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPF-GGPGGDRP 39
           I++LR +L+LP EIVPATL++Q +P   RP   G  G+RP
Sbjct: 76  IQYLRDFLHLPPEIVPATLRRQTRPETARPRPKGLEGERP 115

Ictalurus punctatus (taxid: 7998)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
357481557	698	40S ribosomal protein S10-like protein [	0.549	0.055	0.925	2e-13
449452450	505	PREDICTED: uncharacterized protein LOC10	0.549	0.077	0.925	2e-13
449518405	179	PREDICTED: 40S ribosomal protein S10-lik	0.549	0.217	0.925	2e-11
351724341	183	uncharacterized protein LOC100499910 [Gl	0.549	0.213	0.9	7e-11
388521299	178	unknown [Lotus japonicus]	0.549	0.219	0.9	7e-11
217071210	177	unknown [Medicago truncatula]	0.549	0.220	0.9	8e-11
388512071	177	unknown [Medicago truncatula]	0.549	0.220	0.9	2e-10
388503802	135	unknown [Medicago truncatula]	0.549	0.288	0.9	2e-10
351720674	181	uncharacterized protein LOC100500445 [Gl	0.549	0.215	0.875	2e-10
255537573	180	40S ribosomal protein S10, putative [Ric	0.549	0.216	0.85	3e-09

>gi|357481557|ref|XP_003611064.1| 40S ribosomal protein S10-like protein [Medicago truncatula] gi|355512399|gb|AES94022.1| 40S ribosomal protein S10-like protein [Medicago truncatula]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/40 (92%), Positives = 37/40 (92%), Gaps = 1/40 (2%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPR 40
           IEFLR YLNLPSEIVPATLKKQAKPA GRPFGGP GDRPR
Sbjct: 660 IEFLRTYLNLPSEIVPATLKKQAKPA-GRPFGGPPGDRPR 698

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452450|ref|XP_004143972.1| PREDICTED: uncharacterized protein LOC101214080 [Cucumis sativus]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/40 (92%), Positives = 37/40 (92%), Gaps = 1/40 (2%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPR 40
           IEFLR YLNLPSEIVPATLKKQAKPA GRPFGGP GDRPR
Sbjct: 399 IEFLRTYLNLPSEIVPATLKKQAKPA-GRPFGGPSGDRPR 437

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518405|ref|XP_004166232.1| PREDICTED: 40S ribosomal protein S10-like [Cucumis sativus]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/40 (92%), Positives = 37/40 (92%), Gaps = 1/40 (2%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPR 40
           IEFLR YLNLPSEIVPATLKKQAKPA GRPFGGP GDRPR
Sbjct: 73  IEFLRTYLNLPSEIVPATLKKQAKPA-GRPFGGPSGDRPR 111

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724341|ref|NP_001237822.1| uncharacterized protein LOC100499910 [Glycine max] gi|255627595|gb|ACU14142.1| unknown [Glycine max]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 36/40 (90%), Gaps = 1/40 (2%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPR 40
           IEFLR YLNLPSEIVPATLKKQAKP  GRPFGGP GDRPR
Sbjct: 73  IEFLRTYLNLPSEIVPATLKKQAKPP-GRPFGGPSGDRPR 111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521299|gb|AFK48711.1| unknown [Lotus japonicus]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 36/40 (90%), Gaps = 1/40 (2%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPR 40
           IEFLR YLNLPSEIVPATLKKQAKP  GRPFGGP GDRPR
Sbjct: 73  IEFLRTYLNLPSEIVPATLKKQAKPP-GRPFGGPQGDRPR 111

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071210|gb|ACJ83965.1| unknown [Medicago truncatula]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 36/40 (90%), Gaps = 1/40 (2%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPR 40
           IEFLR YLNLPSEIVPATLKKQAKP  GRPFGGP GDRPR
Sbjct: 73  IEFLRTYLNLPSEIVPATLKKQAKPP-GRPFGGPQGDRPR 111

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512071|gb|AFK44097.1| unknown [Medicago truncatula]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 36/40 (90%), Gaps = 1/40 (2%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPR 40
           IEFLR YLNLPSEIVPATLKKQAKP  GRPFGGP GDRPR
Sbjct: 73  IEFLRTYLNLPSEIVPATLKKQAKPP-GRPFGGPQGDRPR 111

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503802|gb|AFK39967.1| unknown [Medicago truncatula]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 36/40 (90%), Gaps = 1/40 (2%)

Query: 1  IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPR 40
          IEFLR YLNLPSEIVPATLKKQAKP  GRPFGGP GDRPR
Sbjct: 28 IEFLRTYLNLPSEIVPATLKKQAKPP-GRPFGGPQGDRPR 66

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720674|ref|NP_001238208.1| uncharacterized protein LOC100500445 [Glycine max] gi|255630351|gb|ACU15532.1| unknown [Glycine max]

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/40 (87%), Positives = 35/40 (87%), Gaps = 1/40 (2%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPR 40
           IEFLR YLNLPSE VPATLKKQAKP  GRPFGGP GDRPR
Sbjct: 73  IEFLRTYLNLPSETVPATLKKQAKPP-GRPFGGPSGDRPR 111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537573|ref|XP_002509853.1| 40S ribosomal protein S10, putative [Ricinus communis] gi|223549752|gb|EEF51240.1| 40S ribosomal protein S10, putative [Ricinus communis]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/40 (85%), Positives = 35/40 (87%), Gaps = 1/40 (2%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFGGPGGDRPR 40
           IEFLR YLNLPSEIVPATLKKQ+KP  GRP GGP GDRPR
Sbjct: 73  IEFLRTYLNLPSEIVPATLKKQSKPL-GRPMGGPPGDRPR 111

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
TAIR|locus:2160452	180	RPS10B "AT5G41520" [Arabidopsi	0.352	0.138	0.88	1.6e-06
TAIR|locus:2149579	179	AT5G52650 [Arabidopsis thalian	0.352	0.139	0.84	2.1e-06
TAIR|locus:2117497	177	AT4G25740 "AT4G25740" [Arabido	0.352	0.141	0.84	2.1e-06
POMBASE|SPBP22H7.08	147	rps1002 "40S ribosomal protein	0.366	0.176	0.615	0.00013
POMBASE|SPAC31G5.17c	144	rps1001 "40S ribosomal protein	0.352	0.173	0.6	0.00035
ZFIN|ZDB-GENE-040426-1481	166	rps10 "ribosomal protein S10"	0.352	0.150	0.6	0.00084

TAIR|locus:2160452 RPS10B "AT5G41520" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 22/25 (88%), Positives = 23/25 (92%)

Query:     1 IEFLRGYLNLPSEIVPATLKKQAKP 25
             I+FLR YLNLPSEIVPATLKKQ KP
Sbjct:    74 IDFLRTYLNLPSEIVPATLKKQQKP 98

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0010252 "auxin homeostasis" evidence=IGI

GO:0090506 "axillary shoot meristem initiation" evidence=IGI

GO:2000032 "regulation of secondary shoot formation" evidence=IGI

TAIR|locus:2149579 AT5G52650 [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 21/25 (84%), Positives = 23/25 (92%)

Query:     1 IEFLRGYLNLPSEIVPATLKKQAKP 25
             IEFLR YLNLPS++VPATLKK AKP
Sbjct:    73 IEFLRTYLNLPSDVVPATLKKSAKP 97

GO:0005737 "cytoplasm" evidence=ISM

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2117497 AT4G25740 "AT4G25740" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 21/25 (84%), Positives = 23/25 (92%)

Query:     1 IEFLRGYLNLPSEIVPATLKKQAKP 25
             IEFLR YLNLPS++VPATLKK AKP
Sbjct:    73 IEFLRTYLNLPSDVVPATLKKSAKP 97

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

POMBASE|SPBP22H7.08 rps1002 "40S ribosomal protein S10 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 16/26 (61%), Positives = 23/26 (88%)

Query:     1 IEFLRGYLNLPSEIVPATLKKQAKPA 26
             +E+LR YL+LP+E+VPAT K+Q +PA
Sbjct:    73 VEYLREYLHLPAEVVPATHKRQVRPA 98

GO:0000054 "ribosomal subunit export from nucleus" evidence=ISO

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

POMBASE|SPAC31G5.17c rps1001 "40S ribosomal protein S10 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 15/25 (60%), Positives = 22/25 (88%)

Query:     1 IEFLRGYLNLPSEIVPATLKKQAKP 25
             +E+LR YL+LP+E+VPAT K+Q +P
Sbjct:    73 VEYLREYLHLPAEVVPATHKRQVRP 97

GO:0000054 "ribosomal subunit export from nucleus" evidence=ISO

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

ZFIN|ZDB-GENE-040426-1481 rps10 "ribosomal protein S10" [Danio rerio (taxid:7955)]

 Score = 86 (35.3 bits), Expect = 0.00084, P = 0.00083
 Identities = 15/25 (60%), Positives = 22/25 (88%)

Query:     1 IEFLRGYLNLPSEIVPATLKKQAKP 25
             I++LR +L+LP EIVPATL++Q +P
Sbjct:    76 IQYLRDFLHLPPEIVPATLRRQTRP 100


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.141   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       71        57   0.00091  102 3  11 22  0.43    27
                                                     29  0.44    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  464 (49 KB)
  Total size of DFA:  79 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.24u 0.16s 6.40t   Elapsed:  00:00:00
  Total cpu time:  6.24u 0.16s 6.40t   Elapsed:  00:00:00
  Start:  Fri May 10 02:12:15 2013   End:  Fri May 10 02:12:15 2013

GO:0005840 "ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FFS8	RS102_ARATH	No assigned EC number	0.8387	0.4225	0.1666	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.8__1151__AT5G52650.1	annotation not avaliable (179 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_202163.1	annotation not avaliable (297 aa)				•	•	•			0.688
	fgenesh2_kg.6__1496__AT5G15200.1	annotation not avaliable (198 aa)				•	•	•	•		0.640
	scaffold_502012.1	annotation not avaliable (146 aa)				•		•			0.639
	fgenesh2_kg.8__2660__AT5G67510.1	annotation not avaliable (146 aa)				•		•			0.637
	fgenesh2_kg.7__3438__AT5G39850.1	annotation not avaliable (197 aa)				•	•	•	•		0.635
	fgenesh2_kg.7__621__AT4G34670.1	annotation not avaliable (262 aa)				•	•	•			0.628
	fgenesh2_kg.3__447__AT3G04770.1	annotation not avaliable (318 aa)				•	•	•			0.627
	scaffold_602125.1	annotation not avaliable (220 aa)				•	•	•			0.627
	fgenesh2_kg.8__1848__AT5G59240.1	annotation not avaliable (210 aa)				•	•	•	•		0.625
	fgenesh2_kg.6__2385__AT5G23900.1	annotation not avaliable (206 aa)				•		•			0.623

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	71
pfam03501	96	pfam03501, S10_plectin, Plectin/S10 domain	6e-10
PTZ00034	124	PTZ00034, PTZ00034, 40S ribosomal protein S10; Pro	8e-07
COG5045	105	COG5045, COG5045, Ribosomal protein S10E [Translat	2e-04

>gnl|CDD|190664 pfam03501, S10_plectin, Plectin/S10 domain

 Score = 49.9 bits (120), Expect = 6e-10
 Identities = 18/25 (72%), Positives = 23/25 (92%)

Query: 1  IEFLRGYLNLPSEIVPATLKKQAKP 25
          IE+LR YL+LP+E+VPATLKK A+P
Sbjct: 71 IEYLREYLHLPAEVVPATLKKPARP 95

This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Length = 96

>gnl|CDD|173331 PTZ00034, PTZ00034, 40S ribosomal protein S10; Provisional

 Score = 42.7 bits (101), Expect = 8e-07
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAK------PAGGRPFGGPGGDRPR 40
           IE+LR YL+LP ++ PAT KK++          G   G  G  R R
Sbjct: 74  IEYLRTYLHLPPDVFPATHKKKSVNFERKTEEEGSRGGRGGRGRGR 119

Length = 124

>gnl|CDD|227378 COG5045, COG5045, Ribosomal protein S10E [Translation, ribosomal structure and biogenesis]

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRP 30
           +E+LR YL LP E VP+T      P   RP
Sbjct: 73  VEYLREYLVLPDEGVPSTEAPAVSPT-QRP 101

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
KOG3344	150	consensus 40s ribosomal protein s10 [Translation,	99.53
PTZ00034	124	40S ribosomal protein S10; Provisional	99.31
PF03501	95	S10_plectin: Plectin/S10 domain; InterPro: IPR0053	99.19
COG5045	105	Ribosomal protein S10E [Translation, ribosomal str	98.53

>KOG3344 consensus 40s ribosomal protein s10 [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=3.1e-15  Score=106.44  Aligned_cols=39  Identities=59%  Similarity=1.018  Sum_probs=35.8

Q ss_pred             ChhhhhhhCCCCCCchhhhhcccCCCCCCCCC-CCCCCCch
Q 035652            1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRPFG-GPGGDRPR   40 (71)
Q Consensus         1 IeYLR~YLhLP~EIVPaTLkr~~r~~t~Rpr~-g~~gerp~   40 (71)
                      |||||+|||||+|||||||++ ++|+++||++ |.++.+|+
T Consensus        73 i~yLR~YLhLP~EiVpaTl~~-~rP~~~rpr~~g~e~~~p~  112 (150)
T KOG3344|consen   73 IEYLREYLHLPPEIVPATLKR-SRPETGRPRPPGLEGRGPA  112 (150)
T ss_pred             HHHHHHHhcCCcccccchhhc-cCCCCCCCCCCCCCCCCcc
Confidence            799999999999999999999 5888889988 88888885

>PTZ00034 40S ribosomal protein S10; Provisional

Probab=99.31  E-value=8.4e-13  Score=91.38  Aligned_cols=26  Identities=50%  Similarity=0.844  Sum_probs=23.7

Q ss_pred             ChhhhhhhCCCCCCchhhhhcccCCC
Q 035652            1 IEFLRGYLNLPSEIVPATLKKQAKPA   26 (71)
Q Consensus         1 IeYLR~YLhLP~EIVPaTLkr~~r~~   26 (71)
                      |||||+|||||+||||+||++++++.
T Consensus        74 ieyLR~yL~LP~eivP~T~k~~~~~~   99 (124)
T PTZ00034         74 IEYLRTYLHLPPDVFPATHKKKSVNF   99 (124)
T ss_pred             HHHHHHHhCCCcccCchhhcccccCc
Confidence            79999999999999999999986654

>PF03501 S10_plectin: Plectin/S10 domain; InterPro: IPR005326 This presumed domain is found at the N terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein

Probab=99.19  E-value=2.9e-12  Score=85.19  Aligned_cols=24  Identities=71%  Similarity=1.144  Sum_probs=17.4

Q ss_pred             ChhhhhhhCCCCCCchhhhhcccC
Q 035652            1 IEFLRGYLNLPSEIVPATLKKQAK   24 (71)
Q Consensus         1 IeYLR~YLhLP~EIVPaTLkr~~r   24 (71)
                      |||||+|||||+|||||||+++++
T Consensus        71 IeyLR~yL~LP~eivPaTlk~~~~   94 (95)
T PF03501_consen   71 IEYLREYLHLPAEIVPATLKKSRR   94 (95)
T ss_dssp             HHHHHHHC-SSTT--TCCCS-S--
T ss_pred             HHHHHHHhCCChhhCcHHhccccC
Confidence            799999999999999999998744

This domain may be involved in RNA binding.; PDB: 2XZM_7 2XZN_7 3U5C_K 3U5G_K.

>COG5045 Ribosomal protein S10E [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=3.2e-08  Score=67.45  Aligned_cols=30  Identities=47%  Similarity=0.739  Sum_probs=24.6

Q ss_pred             ChhhhhhhCCCCCCchhhhhcccCCCCCCCC
Q 035652            1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRPF   31 (71)
Q Consensus         1 IeYLR~YLhLP~EIVPaTLkr~~r~~t~Rpr   31 (71)
                      +||||+||+||+|+||+|.+++.++ ++||.
T Consensus        73 veyLREyL~lp~e~Vp~t~~~~v~p-t~rp~  102 (105)
T COG5045          73 VEYLREYLVLPDEGVPSTEAPAVSP-TQRPQ  102 (105)
T ss_pred             HHHHHHHhcCccccCccccccccCc-ccCCC
Confidence            4899999999999999999987444 35554

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	71
3u5c_K	105	40S ribosomal protein S10-A; translation, ribosome	3e-09
2xzm_7	162	Plectin/S10 domain containing protein; ribosome, t	2e-06

>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K Length = 105

 Score = 47.9 bits (114), Expect = 3e-09
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 1   IEFLRGYLNLPSEIVPATLKKQAKPAGGRP 30
           +E+LR YLNLP  IVP T  ++  P   RP
Sbjct: 73  VEYLREYLNLPEHIVPGTYIQERNPT-QRP 101

>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7 Length = 162

 Score = 41.9 bits (98), Expect = 2e-06
 Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 1   IEFLRGYLNLPSE-IVPATLKKQAKPAGGRPFGGPGGDRPR 40
            E+L+  L + ++ ++P T K        +        R +
Sbjct: 73  CEYLKTKLGISADNVIPKTFKASNVNFISKEEDEEERPRRQ 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
3u5c_K	105	40S ribosomal protein S10-A; translation, ribosome	99.36
2xzm_7	162	Plectin/S10 domain containing protein; ribosome, t	99.33

>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K

Probab=99.36  E-value=8.9e-14  Score=92.93  Aligned_cols=30  Identities=47%  Similarity=0.847  Sum_probs=22.3

Q ss_pred             ChhhhhhhCCCCCCchhhhhcccCCCCCCCC
Q 035652            1 IEFLRGYLNLPSEIVPATLKKQAKPAGGRPF   31 (71)
Q Consensus         1 IeYLR~YLhLP~EIVPaTLkr~~r~~t~Rpr   31 (71)
                      |||||+|||||+||||||++++ +++++||+
T Consensus        73 ieyLR~yLhLP~eivPaTl~~~-~~~~~rp~  102 (105)
T 3u5c_K           73 VEYLREYLNLPEHIVPGTYIQE-RNPTQRPQ  102 (105)
T ss_dssp             HHHHHHHTCCCSSCCSSCSCCS-CC------
T ss_pred             HHHHHHHhCCCchhcCcccccc-CCCCCCCC
Confidence            7999999999999999999997 44556664

>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7

Probab=99.33  E-value=3.2e-13  Score=95.91  Aligned_cols=31  Identities=19%  Similarity=0.274  Sum_probs=26.8

Q ss_pred             ChhhhhhhCCCCC-CchhhhhcccCCCCCCCCC
Q 035652            1 IEFLRGYLNLPSE-IVPATLKKQAKPAGGRPFG   32 (71)
Q Consensus         1 IeYLR~YLhLP~E-IVPaTLkr~~r~~t~Rpr~   32 (71)
                      |||||+|||||+| |||+||+++.++ ++||++
T Consensus        73 IeYLR~yLhLP~e~IVPaTlk~~~~~-~~rp~~  104 (162)
T 2xzm_7           73 CEYLKTKLGISADNVIPKTFKASNVN-FISKEE  104 (162)
T ss_dssp             HHHHHHHHCSSTTSCCCGGGSCCCCC-CCCCCC
T ss_pred             HHHHHHHhCCCccccccchhccccCC-CCCCCC
Confidence            7999999999999 999999998665 466655

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00