Citrus Sinensis ID: 035694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
Protein Sequence
METEDKERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDGAITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLRRRSRMSVKDEKIAGQEAREMAEELDSKIKAEGQENRGFAFPKARAKLINAESSRSRGKSQQMRRSKSNNNNGNSLVKKRRTSIFHQIKDFIVRSITRLFG
Secondary Structure (PSIPRED)
cccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHHHccccccccHHccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
metedkerkenpgrntsdLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLAsdknrcsmSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCigisetdgaiTVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLRRrsrmsvkdekIAGQEAREMAEELDSKIKaegqenrgfafPKARAKLINaessrsrgksqqmrrsksnnnngnslVKKRRTSIFHQIKDFIVRSITRLFG
Flexible Loop (DISEMBL)
metedkerkenpgrntsdleakTAELVKTKAelkrakdnamqswldskplIDELERLKATlasdknrcsMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALklatdeerrarsnlkqvlrlkrqklrtsqlalratrieseaCRASAAEALRCIGISETDGAITVQMTQEEYHALKRRAEEEASLAEWRVSVSmeqregveasrdfalsrlqetrlrrrsrmsvkdekiagqeaREMAEELDSKIkaegqenrgfafpkARAKlinaessrsrgksqqmrrsksnnnngnslvkkrrtsifhqikdfIVRSITRLFG
Low Complexity Region (SEG)
METEDKERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNlkqvlrlkrqklrTSQLALRATRIEseacrasaaealrcIGISETDGAITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFAlsrlqetrlrrrsrmsVKDEKIAGQEAREMAEELDSKIKAEGQENRGFAFPKARAKLINAESSRSRGKSQQMrrsksnnnngnslvkkrRTSIFHQIKDFIVRSITRLFG
Disordered region (IsUnstruct)
******************************************************************************************************************************************************ALRATRIESEACRASAAEALRCIGISETDGAITVQMTQ********************************************************************************************************************************TSIFHQIKDFIVRSITRL**
Disordered Region (DISOPRED)
*****************************************Q***D*******************************************************************************************************LALRA*R**********************************Y**************************************************************************************************************************************FIVRSITRLF*
Disordered Region (DISEMBL)
***************TSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDGAITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRL************************LDSKIKAEGQENRGFAFPKARAKLIN********************NNGNSLVKKRRTSIFHQIKDFIVRSITRLFG
Disordered Region (DISPRO)
***************TSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDGAITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLRRRSRMSVKDEKIAGQEAREMAEELDSKIKAEGQEN*************************************NSLVKKRRTSIFHQIKDFIVRSITRLFG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METEDKERKENPGRNTSDxxxxxxxxxxxxxxxxxxxxxAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIxxxxxxxxxxxxxxxxxxxxxEVNATMMxxxxxxxxxxxxxxxxxxxxxxxxxxxxRSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDGAITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLRRRSRMSVKDEKIAGQEAREMAEELDSKIKAEGQENRGFAFPKARAKLINAESSRSRGKSQQMRRSKSNNNNGNSLVKKRRTSIFHQIKDFIVRSITRLFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	336	2.2.26 [Sep-21-2011]
O48724	807	Protein WEAK CHLOROPLAST	yes	no	0.523	0.218	0.309	4e-06

>sp|O48724|WEB1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 103/194 (53%), Gaps = 18/194 (9%)

Query: 53  ELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAE 112
           ELE+ K+TLAS K R  M+++ V+ ++AE+D T   I S + +E +A   + EL + L +
Sbjct: 496 ELEKEKSTLASIKQREGMASIAVASIEAEIDRTRSEIASVQSKEKDAREKMVELPKQLQQ 555

Query: 113 TRQELEALK----LATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS--- 165
             +E +  K    +A +E R+A+   +Q     +    T +  L A + E EA +AS   
Sbjct: 556 AAEEADEAKSLAEVAREELRKAKEEAEQA----KAGASTMESRLFAAQKEIEAAKASERL 611

Query: 166 AAEALRCIGISE-------TDGAITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREG 218
           A  A++ +  SE       TD   +V ++ EEY+ L +RA E   LA  RV+ ++ + E 
Sbjct: 612 ALAAIKALEESESTLKANDTDSPRSVTLSLEEYYELSKRAHEAEELANARVAAAVSRIEE 671

Query: 219 VEASRDFALSRLQE 232
            + +   +L +L+E
Sbjct: 672 AKETEMRSLEKLEE 685

Required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photorelocation movement via cp-actin filaments regulation.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
255562623	414	conserved hypothetical protein [Ricinus	0.833	0.676	0.532	2e-65
224084297	339	predicted protein [Populus trichocarpa]	0.916	0.908	0.475	3e-59
357518585	321	hypothetical protein MTR_8g079700 [Medic	0.910	0.953	0.414	4e-47
255562631	250	conserved hypothetical protein [Ricinus	0.648	0.872	0.402	1e-34
413955402	823	putative DUF827 domain containing family	0.636	0.260	0.319	2e-08
242046320	289	hypothetical protein SORBIDRAFT_02g03948	0.410	0.477	0.323	6e-08
125559200	298	hypothetical protein OsI_26897 [Oryza sa	0.395	0.446	0.338	2e-07
55741111	295	putative caltractin [Zea mays]	0.449	0.511	0.307	3e-07
22296359	335	hypothetical protein [Oryza sativa Japon	0.395	0.397	0.338	3e-07
55741070	295	putative caltractin [Zea mays] gi|414887	0.449	0.511	0.300	6e-07

>gi|255562623|ref|XP_002522317.1| conserved hypothetical protein [Ricinus communis] gi|223538395|gb|EEF40001.1| conserved hypothetical protein [Ricinus communis]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 156/293 (53%), Positives = 205/293 (69%), Gaps = 13/293 (4%)

Query: 1   METEDKERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKAT 60
           ME   KER++N   +T D     AEL++ + EL RAKD+AMQSWLDSKPLIDELE+L+A 
Sbjct: 1   MEKYGKERRKNQPDDT-DHNKLQAELIEIREELYRAKDSAMQSWLDSKPLIDELEKLQAG 59

Query: 61  LASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEAL 120
           LAS KNR SMSN+++SEL+++L++ +  + +K E+E  A  MI ELSQAL E  +E EA+
Sbjct: 60  LASSKNRTSMSNIVISELESQLEAISIEVRTKVEDETKAKEMINELSQALEEKYKESEAI 119

Query: 121 KLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDG 180
           KL  DEERRARS LKQVLR++ Q LRT QL L+A RIESEA  ASA +A+  I  S TD 
Sbjct: 120 KLDADEERRARSKLKQVLRIRTQTLRTLQLTLQAIRIESEAFGASAVDAVGHIKGSRTDY 179

Query: 181 AITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLRRRSR 240
            + V++ Q EY+AL+ RA+E+ +LAEWRVSVSMEQ+   E SR+FALSRL+E +     R
Sbjct: 180 TV-VRVGQGEYYALESRAKEKTALAEWRVSVSMEQKLAAEESRNFALSRLKELK-----R 233

Query: 241 MSVKDEKIAGQEAREMAEELDSKIKAEGQENRGFAFPKARAKLINAESSRSRG 293
            + K+EKI G   + + E+  S+I    QEN   A PKAR K I  +S+R +G
Sbjct: 234 STSKEEKIYG--IKHVEEQQSSEI----QENSRMASPKARKKAITNKSNRRKG 280

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084297|ref|XP_002307253.1| predicted protein [Populus trichocarpa] gi|222856702|gb|EEE94249.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 152/320 (47%), Positives = 208/320 (65%), Gaps = 12/320 (3%)

Query: 21  AKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQA 80
            K  E  K K EL++AKD AMQSWLDS+PLIDELE+L++ LAS KNR SMSN+++SEL++
Sbjct: 28  GKMEEWTKMKEELQKAKDEAMQSWLDSRPLIDELEKLQSGLASAKNRASMSNIVISELES 87

Query: 81  ELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRL 140
           +L++T     SK EEE+    M  E++QA+   R+E + +KL TDEERR RS LKQVLRL
Sbjct: 88  QLEATNADTQSKMEEEIKVANMTNEITQAMDHLREEFKRIKLETDEERRERSKLKQVLRL 147

Query: 141 KRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDGAITVQMTQEEYHALKRRAEE 200
           +RQ LR  QL LRA +IESEA   SAA AL  I   E++ + TVQ++QE+Y +LKRRA+E
Sbjct: 148 RRQTLRKLQLTLRAVQIESEAFGESAAAALGHIKSWESENS-TVQLSQEDYLSLKRRAKE 206

Query: 201 EASLAEWRVSVSMEQREGVEASRDFALSR----LQETRLRRRSRMSVKDEKIAGQEAREM 256
             SL++WR+SVS EQ+   E SR+ A  R    L E  +  R RM  +DEK   ++   +
Sbjct: 207 RTSLSDWRISVSTEQKLAAEESRNLASRRRKEILSEKNMSWRRRM--EDEKTR-EDGCTI 263

Query: 257 AEELDSKIKAEGQENRGFAFPKARAKLINAESSRSRGKSQQMRRSKSNNNNGNSLVKKRR 316
            EE +   +++  +  G AFPKAR K I+   S S    Q+MR S    N      KK++
Sbjct: 264 KEEEEEDSRSQKVKRSGNAFPKARPKAIS--KSNSTTPPQKMRGSARKRNKKLQ--KKKK 319

Query: 317 TSIFHQIKDFIVRSITRLFG 336
            SI  Q++ F+V+S+ +LFG
Sbjct: 320 LSILQQVRRFLVQSMRKLFG 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518585|ref|XP_003629581.1| hypothetical protein MTR_8g079700 [Medicago truncatula] gi|355523603|gb|AET04057.1| hypothetical protein MTR_8g079700 [Medicago truncatula]

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 135/326 (41%), Positives = 193/326 (59%), Gaps = 20/326 (6%)

Query: 1   METEDKERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKAT 60
           M  ED E  EN   N S LEA  AEL + K EL RAK+NAMQSWLDSKPLIDELE+ K  
Sbjct: 9   MNNEDVE--EN---NRSILEAAKAELDEAKKELNRAKENAMQSWLDSKPLIDELEKQKTN 63

Query: 61  LASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEAL 120
           LA+ +   +   + + EL+++L+ T KSI SK+E+ V    MI E++ AL +   ++E L
Sbjct: 64  LANAQQNSNTPEIAIVELESQLEITEKSIKSKREDHVKTENMIYEINHALDQMCNDMERL 123

Query: 121 KLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDG 180
           K    +E++ R+ LKQ L L+R+ ++T QL L+A  +E +A   S A+A + I  SE + 
Sbjct: 124 KHNIKKEKQTRAKLKQTLHLRRRTVQTLQLTLQAVLLELDAVEVSTAKAFQLINHSENNT 183

Query: 181 AITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLRRRSR 240
           +  VQ++  +Y+ALKRRAEE  S A WRVSVSMEQ+   EA+R+FALSRL          
Sbjct: 184 S-DVQLSHRDYYALKRRAEERKSQANWRVSVSMEQKLAAEATREFALSRL--NHFYSSKS 240

Query: 241 MSVKDEKIAGQEAREM-AEELDSKIKAEGQENRGFAFPKARAK-LINAESSRSRGKSQQM 298
            S     I GQ  +E  A+  D  ++ E   N   A PK+ AK L+ +E     GK Q  
Sbjct: 241 WSRNRRNITGQWHKEKEAKTKDVIVQDEVTTNINSASPKSHAKSLVKSEG----GKRQHS 296

Query: 299 RRSKSNNNNGNSLVKKRRTSIFHQIK 324
           +++ SN      +   +++SI H+++
Sbjct: 297 KKTASN------IKTTKKSSILHRMR 316

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562631|ref|XP_002522321.1| conserved hypothetical protein [Ricinus communis] gi|223538399|gb|EEF40005.1| conserved hypothetical protein [Ricinus communis]

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/231 (40%), Positives = 146/231 (63%), Gaps = 13/231 (5%)

Query: 50  LIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQA 109
           + DELE L++ LA  K+R S+S+ ++SEL+ +L+ST  SI S+ EEE+ A  +  E+++A
Sbjct: 1   MTDELEILQSKLAISKDRISVSSALISELELQLESTNMSIKSRMEEELQAKKLTDEITEA 60

Query: 110 LAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEA 169
             ET + LE +K    EERRARS LKQVLR+++Q +R  Q+ L+A  +ESEA  AS +E+
Sbjct: 61  CDETCKTLEMIKREIYEERRARSKLKQVLRMRKQTIRALQVTLQAVEMESEAFGASTSES 120

Query: 170 LRCIGISETDGAITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSR 229
           +  I  SETD + TVQ+ Q+EY+AL+ RA +E +L EWR+S+ ++Q+   + SR+F LSR
Sbjct: 121 IGHIKNSETDNS-TVQLPQDEYYALRERAMDETALGEWRISIFLKQKLAAQESRNFCLSR 179

Query: 230 LQETRLRRRSRMSVKDEKIAGQEAREMAEELDSKIKAEGQENRGFAFPKAR 280
           L+E   ++     + ++   G   +E+ ++            RG   PK R
Sbjct: 180 LEELSTKKGKEKKINED---GNIIKEVEQQ---------SPTRGTVLPKVR 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413955402|gb|AFW88051.1| putative DUF827 domain containing family protein [Zea mays]

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 8/222 (3%)

Query: 19  LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSEL 78
           L +K  EL + K +L+ A++ A    + ++ L  EL+R KA+LA+ +    M+++ VS L
Sbjct: 482 LASKRKELAELKGKLENARNEANLVRVTAESLSSELDREKASLAALQQSEGMASITVSSL 541

Query: 79  QAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVL 138
           +AELD T + I    ++E  A   + EL + L    QE E  K+A    +      K+ +
Sbjct: 542 EAELDRTEQEIEMVHKKEAEAREKMAELPRMLQRAAQEAEDAKMAAHSAQEELRKAKEEV 601

Query: 139 RLKRQKLRTSQLALRATRIESEACRAS---AAEALRCIGISETDGAI-----TVQMTQEE 190
              +    T+   LRA   E EA +AS   A  A + +  SE  G+       V +   E
Sbjct: 602 ERAKASATTAGTRLRAVSKEIEASKASERLAIAAAQAMQESEDTGSTGASPRVVTLPVSE 661

Query: 191 YHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQE 232
           YHAL  +  E   LA  RV+V++ Q E  + S   +L RLQE
Sbjct: 662 YHALSEKVHEAEELANERVAVALAQVELAKVSESRSLERLQE 703

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242046320|ref|XP_002461031.1| hypothetical protein SORBIDRAFT_02g039480 [Sorghum bicolor] gi|241924408|gb|EER97552.1| hypothetical protein SORBIDRAFT_02g039480 [Sorghum bicolor]

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 80/142 (56%), Gaps = 4/142 (2%)

Query: 12  PGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMS 71
           P   TS L+    EL  T+ E++RA++ A+Q+WL S PL +ELERL+A L + K R + +
Sbjct: 12  PSTTTSVLK----ELSGTREEVERAREAAVQAWLASMPLSEELERLRAELVAAKTRLAAT 67

Query: 72  NMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRAR 131
              +  L+++++ST  +I +++E         ++L + +   R +L  L+      R A+
Sbjct: 68  AAEIPLLKSQIESTNGAIATRQEAAARKKAAAEDLRRHVDGARADLRRLRAEIAASRGAK 127

Query: 132 SNLKQVLRLKRQKLRTSQLALR 153
             L+Q + ++RQ  R  QLA R
Sbjct: 128 DALEQRVLVRRQAARALQLAER 149

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125559200|gb|EAZ04736.1| hypothetical protein OsI_26897 [Oryza sativa Indica Group]

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 6/139 (4%)

Query: 25  ELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDS 84
           EL  T+ E+ RA++ A+++WL + PL +ELERL+A LA+ KNR + +   +  L++ + S
Sbjct: 19  ELSGTRVEVARAREAAVKAWLSAMPLGEELERLRAELAAAKNRLAATAAEMPPLKSAIAS 78

Query: 85  TTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLR---LK 141
           T  + +++KE         +EL + +   R EL  L+    E   AR  +  V R   ++
Sbjct: 79  TNDAAVARKEAAGEKRAAAEELRRRVDRARDELRRLR---SEAAAAREEIGAVERRVLVR 135

Query: 142 RQKLRTSQLALRATRIESE 160
           RQ  R  QLA RA   E+ 
Sbjct: 136 RQAARALQLAERAVAAEAH 154

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55741111|gb|AAV64249.1| putative caltractin [Zea mays]

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 82/153 (53%), Gaps = 2/153 (1%)

Query: 1   METEDKERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKAT 60
           ME    E  E P   T+ +  K   L  T+ E++RA++ A+Q+WL S PL +ELERL+A 
Sbjct: 1   MEEGTNESAELPPGTTASVHNKA--LSGTREEVERAREAAVQAWLASMPLGEELERLRAE 58

Query: 61  LASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEAL 120
           LA+ K R + +   +  L++ +++T  ++ +++E         ++L   +   R EL  L
Sbjct: 59  LAAAKTRLAATAAEIPLLKSRIEATNAAVATRQEAAARKKAAAEDLRLRVDAARAELRRL 118

Query: 121 KLATDEERRARSNLKQVLRLKRQKLRTSQLALR 153
           +      R A+  L++ + ++RQ  R  QLA R
Sbjct: 119 RAEVAASRGAKDALERRVLVRRQAARALQLAER 151

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22296359|dbj|BAC10129.1| hypothetical protein [Oryza sativa Japonica Group] gi|22296405|dbj|BAC10173.1| hypothetical protein [Oryza sativa Japonica Group]

 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 6/139 (4%)

Query: 25  ELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDS 84
           EL  T+ E+ RA++ A+++WL + PL +ELERL+A LA+ KNR + +   +  L++ + S
Sbjct: 56  ELSGTRVEVARAREAAVKAWLSAMPLGEELERLRAELAAAKNRLAATAAEMPPLKSAIAS 115

Query: 85  TTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLR---LK 141
           T  + +++KE         +EL + +   R EL  L+    E   AR  +  V R   ++
Sbjct: 116 TNDAAVARKEAAGEKRAAAEELRRRVDRARDELRRLR---SEAAAAREEIGAVERRVLVR 172

Query: 142 RQKLRTSQLALRATRIESE 160
           RQ  R  QLA RA   E+ 
Sbjct: 173 RQAARALQLAERAVAAEAH 191

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55741070|gb|AAV64212.1| putative caltractin [Zea mays] gi|414887618|tpg|DAA63632.1| TPA: putative caltractin [Zea mays]

 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 2/153 (1%)

Query: 1   METEDKERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKAT 60
           ME  + E  E P   T+ +  K   L  T+ E++R ++ A+Q+WL S PL +ELERL+  
Sbjct: 1   MEEGNNESAELPPGTTASVHNKA--LSGTREEVERGREAAVQAWLASMPLGEELERLRTE 58

Query: 61  LASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEAL 120
           LA+ K R + +   +  L++ ++ST  ++ +++E         ++L   +   R EL  L
Sbjct: 59  LAAAKTRLAATAAEIPLLKSRIESTNAAVATRQEAAARKKAAAEDLRLRVDGARAELRRL 118

Query: 121 KLATDEERRARSNLKQVLRLKRQKLRTSQLALR 153
           +      R A+  L++ + ++RQ  R  QLA R
Sbjct: 119 RAEVAASRGAKDALERRVLVRRQAARALQLAER 151

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
TAIR|locus:2066301	807	WEB1 "WEAK CHLOROPLAST MOVEMEN	0.622	0.258	0.270	5.5e-10
TAIR|locus:2119206	779	AT4G33390 "AT4G33390" [Arabido	0.595	0.256	0.247	3.6e-06
WB|WBGene00015639	457	C09E7.5 [Caenorhabditis elegan	0.383	0.282	0.288	0.00018
ZFIN|ZDB-GENE-030429-36	978	rrbp1b "ribosome binding prote	0.383	0.131	0.265	0.00085
ZFIN|ZDB-GENE-050522-417	350	homer2 "homer homolog 2 (Droso	0.342	0.328	0.278	0.00095

TAIR|locus:2066301 WEB1 "WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 5.5e-10, P = 5.5e-10
 Identities = 60/222 (27%), Positives = 102/222 (45%)

Query:     7 ERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKN 66
             E   +P  + +   AK  EL +    +++A        L S  L  ELE+ K+TLAS K 
Sbjct:   451 ENMSHPDLHAAVASAKK-ELEEVNVNIEKAAAEVSCLKLASSSLQLELEKEKSTLASIKQ 509

Query:    67 RCSMSNMIVSELQAELDSTTKSIMS--KKEEEVNATM--MIKELSQALAETRQELEAL-K 121
             R  M+++ V+ ++AE+D T   I S   KE++    M  + K+L QA AE   E ++L +
Sbjct:   510 REGMASIAVASIEAEIDRTRSEIASVQSKEKDAREKMVELPKQLQQA-AEEADEAKSLAE 568

Query:   122 LATDEERRARSNXXXXXXXXXXXXX---TSQLALRATRIEXXXXXXXXXX---XXXXIGI 175
             +A +E R+A+                   +Q  + A +                   +  
Sbjct:   569 VAREELRKAKEEAEQAKAGASTMESRLFAAQKEIEAAKASERLALAAIKALEESESTLKA 628

Query:   176 SETDGAITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQRE 217
             ++TD   +V ++ EEY+ L +RA E   LA  RV+ ++ + E
Sbjct:   629 NDTDSPRSVTLSLEEYYELSKRAHEAEELANARVAAAVSRIE 670

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0009903 "chloroplast avoidance movement" evidence=IMP

GO:0009904 "chloroplast accumulation movement" evidence=IMP

TAIR|locus:2119206 AT4G33390 "AT4G33390" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 53/214 (24%), Positives = 92/214 (42%)

Query:    16 TSDLEAKTA----ELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMS 71
             T+D++   A    EL +  A +++A        + S  L  E+++ K+ L S K R  M+
Sbjct:   447 TTDIQKAVASAKKELEEVNANVEKATSEVNCLKVASSSLRLEIDKEKSALDSLKQREGMA 506

Query:    72 NMIVSELQAELDSTTKSI--MSKKEEEVNATM--MIKELSQALAETRQELEALKLATDEE 127
             ++ V+ L+AE+D T   I  +  KE+E    M  + K+L QA  E  +     +LA +E 
Sbjct:   507 SVTVASLEAEIDITRCEIALVKSKEKETREEMVELPKQLQQASQEADEAKSFAELAREEL 566

Query:   128 RRARSNXXXXXXXXXXXXX---TSQLALRATRIEXXXXXXXXXXXXXXIGISE---TDGA 181
             R+++                   +Q  + A +                   S+    D  
Sbjct:   567 RKSQEEAEQAKAGASTMESRLFAAQKEIEAIKASERLALAAIKALQESESSSKENAVDSP 626

Query:   182 ITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQ 215
              TV +T EEY+ L +RA E    A  RV+ ++ +
Sbjct:   627 RTVTLTIEEYYELSKRAHEAEEAANARVAAAVSE 660

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

WB|WBGene00015639 C09E7.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
 Identities = 39/135 (28%), Positives = 68/135 (50%)

Query:     3 TE-DKERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATL 61
             TE +K+ KE  G+ T      +  + + +A+LKR  D A +       L++++ RL   L
Sbjct:   131 TESEKKLKETNGKVTKSRNQLSERVSELEAQLKREADTAQKPKQADPDLLNKVGRLNDLL 190

Query:    62 ASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEA-- 119
              S+K    +    V++ +AEL+ST K++  K   E   T++ ++L Q    TR  LEA  
Sbjct:   191 TSEKQNTRVLQEEVAKFKAELESTNKTMKQKLVHE-RKTLIKEKLEQGKEITRL-LEANA 248

Query:   120 -LKLATDEERRARSN 133
              L +  +E++    N
Sbjct:   249 HLSIQNEEQKNLIQN 263

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-030429-36 rrbp1b "ribosome binding protein 1 homolog b (dog)" [Danio rerio (taxid:7955)]

 Score = 117 (46.2 bits), Expect = 0.00085, P = 0.00085
 Identities = 38/143 (26%), Positives = 73/143 (51%)

Query:     5 DKERKENPGRNTSDLEAKTAELVKTKAELKRAKD--NAMQSWLDS-----KPLIDELERL 57
             +++ K+         +A   +L K K EL+ A+   N +Q+ +D+     K L D  ER+
Sbjct:   450 EEQLKQTQASCVGTEQALQKKLDKLKEELQEAQQGSNKLQTQVDAAKEQAKTLADLQERM 509

Query:    58 KATLASDKNRCSMSNMIVSELQ--AELDSTTKSIMSKKEEEVNATMMIKE-----LSQAL 110
             + T    KNRC    ++ ++     E+++T + I S++ E++ +++  +E     +   L
Sbjct:   510 RVTETELKNRCEELEILRAQENPTVEIEATVQKINSEEVEQLRSSLKEREEQLTSMEAEL 569

Query:   111 AETRQELEALKLATDEERRARSN 133
              + R+ELE +K A  EE + R N
Sbjct:   570 TQLREELETVKRAQAEETQNRVN 592

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

ZFIN|ZDB-GENE-050522-417 homer2 "homer homolog 2 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 111 (44.1 bits), Expect = 0.00095, P = 0.00095
 Identities = 34/122 (27%), Positives = 66/122 (54%)

Query:     5 DKERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDE-LERLKATLAS 63
             D E+  + G  T+ L+A+  +L+K+  E  +  ++ +Q+  DS   + E L+  +++  S
Sbjct:   148 DDEKISHSGPETAALKAEN-DLLKSAVEESKKCESELQALRDSSARLQEALQEAESSAES 206

Query:    64 DKNRCSMS----NMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEA 119
              K + + S    N + S++ AEL+   K +  ++E     T+ I+EL   L + +QELE 
Sbjct:   207 WKTQATRSLEENNQLRSKI-AELELQCKELSVERERNAQLTVRIQELEADLQDKQQELEN 265

Query:   120 LK 121
             L+
Sbjct:   266 LR 267


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.122   0.309    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      336       276   0.00079  115 3  10 23  0.44    34
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  226 KB (2124 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  38.22u 0.15s 38.37t   Elapsed:  00:00:02
  Total cpu time:  38.22u 0.15s 38.37t   Elapsed:  00:00:02
  Start:  Fri May 10 04:02:48 2013   End:  Fri May 10 04:02:50 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V000494 hypothetical protein (339 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	336
pfam05701	484	pfam05701, DUF827, Plant protein of unknown functi	5e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001

>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827)

 Score = 53.8 bits (129), Expect = 5e-08
 Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 13/221 (5%)

Query: 23  TAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAEL 82
             EL + KA L++A +         + L  ELE  K  L   + +   +    S L+AEL
Sbjct: 258 LKELEEAKANLEKAAEEEKSLRNLVESLKQELEEEKKELEELREKEGEAEEAASSLEAEL 317

Query: 83  DSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKR 142
           + T      K E+E  A   + E+   L +   E E  +   +  R     LK+     +
Sbjct: 318 NRT------KSEKESKAREKMVEIPLKLQQASSEAEEARKEAEAAREELRKLKEEAEQTK 371

Query: 143 QKLRTSQLALRATRIESEACRASAAEALRCIGI-------SETDGAITVQMTQEEYHALK 195
             L T++L L A   E+EA +A+ A AL  I         ++ D    + ++ EEY  L 
Sbjct: 372 AALETAELRLEAALKEAEAAKAAEALALAEIKALQESEESAKADSPRKITLSLEEYEELS 431

Query: 196 RRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLR 236
           ++AEE   LAE +V+ ++ Q E  + S + +L +L+E    
Sbjct: 432 KKAEEAEELAEKKVAAALAQVEEAKESENESLKKLEEASKE 472

This family consists of several plant proteins of unknown function. Several sequences in this family are described as being "myosin heavy chain-like". Length = 484

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 56/299 (18%), Positives = 102/299 (34%), Gaps = 23/299 (7%)

Query: 19  LEAKTAELVKTKAELKRAKDNAMQ--------SWLDSKPLIDELERLKATLASDKNRCSM 70
           LE    EL K   +L+R  + A +          L+   L+ +L+ L+  L   +   S 
Sbjct: 191 LEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSR 250

Query: 71  SNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEAL--KLATDEER 128
               + ELQ EL+   K I   K E       ++EL + L E ++E+E L  +++   ER
Sbjct: 251 LEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310

Query: 129 RARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDGAITVQMTQ 188
                 +     +R +    ++      +E         E L           +     +
Sbjct: 311 LEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE--------LEEAKEE 362

Query: 189 EEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFA-----LSRLQETRLRRRSRMSV 243
            E        E E      R  ++  + E  E   +       +  L+E   R   R+  
Sbjct: 363 LEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLED 422

Query: 244 KDEKIAGQEAREMAEELDSKIKAEGQENRGFAFPKARAKLINAESSRSRGKSQQMRRSK 302
             E++   EA     + + +   E  E       + R +L   E   +  + +  R  K
Sbjct: 423 LKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEK 481

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 45/215 (20%), Positives = 78/215 (36%), Gaps = 5/215 (2%)

Query: 2   ETEDKERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATL 61
           E E +E +E       +L    AE+ + +A++++ K+           L  EL  L    
Sbjct: 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA 819

Query: 62  ASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALK 121
           A+ + R       ++  +  L+   + I    E+  +    I+EL + + E   ELEAL 
Sbjct: 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879

Query: 122 LATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDGA 181
                   A + L+  L    ++LR  +      R E E  R   A+    +   E    
Sbjct: 880 NERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID 939

Query: 182 ITVQMTQEEY-----HALKRRAEEEASLAEWRVSV 211
              +   EEY      A     + E    E R  +
Sbjct: 940 NLQERLSEEYSLTLEEAEALENKIEDDEEEARRRL 974

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	336
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	100.0
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.32
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.09
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.6
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	95.77
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.11
PRK11637	428	AmiB activator; Provisional	94.99
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	94.97
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.73
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.45
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.27
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.18
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	94.04
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	93.93
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	93.9
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	93.85
PRK11637	428	AmiB activator; Provisional	93.45
PRK09039	343	hypothetical protein; Validated	93.34
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.05
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.99
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	91.46
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	90.93
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	90.84
COG4942	420	Membrane-bound metallopeptidase [Cell division and	89.93
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.74
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.73
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	89.13
KOG0996	1293	consensus Structural maintenance of chromosome pro	89.04
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	88.62
PHA02562	562	46 endonuclease subunit; Provisional	88.53
PRK02224	880	chromosome segregation protein; Provisional	87.38
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	86.99
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	86.7
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	86.43
PRK09039	343	hypothetical protein; Validated	86.42
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	86.34
PRK02224	880	chromosome segregation protein; Provisional	85.84
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	85.84
KOG0933	1174	consensus Structural maintenance of chromosome pro	84.67
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	84.58
KOG0971	1243	consensus Microtubule-associated protein dynactin	84.47
PRK04778	569	septation ring formation regulator EzrA; Provision	84.09
PRK04863	1486	mukB cell division protein MukB; Provisional	83.53
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	83.15
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	82.87
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	82.78
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	82.66
KOG0933	1174	consensus Structural maintenance of chromosome pro	82.43
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	82.25
KOG0964	1200	consensus Structural maintenance of chromosome pro	82.06
KOG0996	1293	consensus Structural maintenance of chromosome pro	81.72
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	81.51
PF00038	312	Filament: Intermediate filament protein; InterPro:	81.01
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	80.86
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	80.7
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	80.67
PRK04778	569	septation ring formation regulator EzrA; Provision	80.26
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	80.17

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=100.00  E-value=4.1e-42  Score=349.75  Aligned_cols=223  Identities=32%  Similarity=0.365  Sum_probs=214.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHH
Q 035694           15 NTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKE   94 (336)
Q Consensus        15 ~~~~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~   94 (336)
                      ....|.+++.||+++|.+|+++++|+++||..+++|++||+++|.+|..++++++++++.|++|+.+|++++++|+++++
T Consensus       279 ~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~  358 (522)
T PF05701_consen  279 LQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKA  358 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHh
Confidence            35669999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035694           95 EEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIG  174 (336)
Q Consensus        95 ~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk  174 (336)
                      .+.++++.+++|+..|++++.|+++|+.++..++.++.+++.+++++++.+.|++.||+++++|++|+|+|++.|+..|+
T Consensus       359 ~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik  438 (522)
T PF05701_consen  359 EEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIK  438 (522)
T ss_pred             hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ---cccc-------CCCCceeecHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 035694          175 ---ISET-------DGAITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLRR  237 (336)
Q Consensus       175 ---~Se~-------~~~~~VTLS~eEY~~Ls~rA~EaEelA~kRVaaA~aqVeaAKaSE~e~L~RLEea~ke~  237 (336)
                         .+..       .+|++||||.+|||+|++||++++++|++||++||+||++||+||+++|+||+++.++.
T Consensus       439 ~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e~  511 (522)
T PF05701_consen  439 ALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKEI  511 (522)
T ss_pred             HhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2221       12689999999999999999999999999999999999999999999999999999995

Several sequences in this family are described as being myosin heavy chain-like.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.32  E-value=0.00025  Score=73.54  Aligned_cols=163  Identities=23%  Similarity=0.281  Sum_probs=107.5

Q ss_pred             HHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHH
Q 035694           38 DNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQEL  117 (336)
Q Consensus        38 ~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~Ea  117 (336)
                      .....++..+.++..||+..+.+|...+.-...--..|.+|..+|.+.+.+|...+..+..+...+..|...|+++..++
T Consensus       274 ~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL  353 (522)
T PF05701_consen  274 EKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL  353 (522)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence            34455666677778888888888888877777777888888888888888888877777777777777777777777777


Q ss_pred             HHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCceeecHHH
Q 035694          118 EALKLATDEERR-------ARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDGAITVQMTQEE  190 (336)
Q Consensus       118 E~AK~ea~~are-------E~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk~Se~~~~~~VTLS~eE  190 (336)
                      +.++.....++.       .+..+..|++.++..+..+...+.-+..|++.++++                         
T Consensus       354 ea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~-------------------------  408 (522)
T PF05701_consen  354 EAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAA-------------------------  408 (522)
T ss_pred             HHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence            665554443333       333333333333333333333333333333333322                         


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 035694          191 YHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLR  236 (336)
Q Consensus       191 Y~~Ls~rA~EaEelA~kRVaaA~aqVeaAKaSE~e~L~RLEea~ke  236 (336)
                                 =.-++.|+-+++-.+++||+||..+|..+..+...
T Consensus       409 -----------i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~  443 (522)
T PF05701_consen  409 -----------IKTAEERLEAALKEAEAAKASEALALAEIKALSES  443 (522)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence                       23356788889999999999999999999987654

Several sequences in this family are described as being myosin heavy chain-like.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.09  E-value=0.5  Score=51.57  Aligned_cols=21  Identities=19%  Similarity=0.300  Sum_probs=15.7

Q ss_pred             hhhhhHHHHHHHHHHHhhhhC
Q 035694          316 RTSIFHQIKDFIVRSITRLFG  336 (336)
Q Consensus       316 ~~s~~~~~~~~~~~~~~~~~~  336 (336)
                      +..-|-.|+.-|...+..|||
T Consensus      1030 ~~~~F~~v~~~f~~~F~~lf~ 1050 (1179)
T TIGR02168      1030 ARERFKDTFDQVNENFQRVFP 1050 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            356677888888888888885

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.60  E-value=1.5  Score=47.91  Aligned_cols=40  Identities=15%  Similarity=0.200  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Q 035694           21 AKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKAT   60 (336)
Q Consensus        21 s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~e   60 (336)
                      ....+++.....++........+......+..++......
T Consensus       674 ~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~  713 (1179)
T TIGR02168       674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE  713 (1179)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=95.77  E-value=2.8  Score=44.69  Aligned_cols=201  Identities=19%  Similarity=0.174  Sum_probs=142.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHH
Q 035694           17 SDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEE   96 (336)
Q Consensus        17 ~~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E   96 (336)
                      +-+.+++.-|+++-....++..++..||.-++.|+.-+++--..+...+++...-...+++|++++.-++..+..+.+..
T Consensus        92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~  171 (546)
T KOG0977|consen   92 AELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL  171 (546)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            44778888888888888888888888888888888888888888888888888889999999999999999999999988


Q ss_pred             HHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 035694           97 VNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKR----QKLRTSQLALRATR--IESEACRASAAEAL  170 (336)
Q Consensus        97 ~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaK----a~i~taE~RL~Aa~--kE~EAAkASea~Al  170 (336)
                      ..-+.-..-|+..|+.+..++++.-..--..+..+..|.+++.-.+    ..|.......+--.  .==+-++.==+.||
T Consensus       172 ~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai  251 (546)
T KOG0977|consen  172 KRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAI  251 (546)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHH
Confidence            8888888899999999999999998888888899999999888776    33333322222211  11122222245667


Q ss_pred             HHhhc-cccCCCCceeecHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035694          171 RCIGI-SETDGAITVQMTQEEYHAL-KRRAEEEASLAEWRVSVSMEQREGVEA  221 (336)
Q Consensus       171 ~~Lk~-Se~~~~~~VTLS~eEY~~L-s~rA~EaEelA~kRVaaA~aqVeaAKa  221 (336)
                      +.|.. ++    +.+.....+++.. ..++++....++.-........++.+.
T Consensus       252 ~eiRaqye----~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~  300 (546)
T KOG0977|consen  252 REIRAQYE----AISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRR  300 (546)
T ss_pred             HHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHH
Confidence            77763 32    2233444444432 345555555444444444444444443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.11  E-value=3  Score=39.17  Aligned_cols=122  Identities=16%  Similarity=0.192  Sum_probs=103.2

Q ss_pred             hHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHH
Q 035694           40 AMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEA  119 (336)
Q Consensus        40 ~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~  119 (336)
                      +.....-.+-...-|..+...|..+..|...+...|..|+.+|..+...|..+...+.++-.....+...|..|..-...
T Consensus       108 ~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lke  187 (237)
T PF00261_consen  108 AEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKE  187 (237)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            33333333444555677788888899999999999999999999999999999999988888888888889999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          120 LKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEA  161 (336)
Q Consensus       120 AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EA  161 (336)
                      +-.-++.+...+..|...+..-...|.....+...+..|++.
T Consensus       188 aE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~  229 (237)
T PF00261_consen  188 AENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ  229 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888888888864

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK11637 AmiB activator; Provisional

Probab=94.99  E-value=4.6  Score=40.82  Aligned_cols=75  Identities=11%  Similarity=0.247  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHH
Q 035694           22 KTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEE   96 (336)
Q Consensus        22 ~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E   96 (336)
                      +..+|++.+..|.....+...+..-...+..+|..+...|..+..+.......+..++.+|..+..+|...+..-
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l  119 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ  119 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555555555555555555555555555555555555555554444443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=94.97  E-value=7.3  Score=43.00  Aligned_cols=6  Identities=33%  Similarity=0.816  Sum_probs=2.3

Q ss_pred             HhhhhC
Q 035694          331 ITRLFG  336 (336)
Q Consensus       331 ~~~~~~  336 (336)
                      |.-+||
T Consensus       616 ~~~~lg  621 (1164)
T TIGR02169       616 FKYVFG  621 (1164)
T ss_pred             HHHHCC
Confidence            333443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.73  E-value=4.2  Score=39.10  Aligned_cols=11  Identities=0%  Similarity=0.274  Sum_probs=5.8

Q ss_pred             eeecHHHHHHH
Q 035694          184 VQMTQEEYHAL  194 (336)
Q Consensus       184 VTLS~eEY~~L  194 (336)
                      |-||...|.-.
T Consensus       205 m~l~~~~~~~V  215 (239)
T COG1579         205 MKLPSQTLSKV  215 (239)
T ss_pred             eeecHHHHHHH
Confidence            55555555443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.45  E-value=6.2  Score=42.11  Aligned_cols=52  Identities=15%  Similarity=0.090  Sum_probs=28.3

Q ss_pred             eeecHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 035694          184 VQMTQEEYHALKRRAEEEASL-AEWRVSVSMEQREGVEASRDFALSRLQETRLR  236 (336)
Q Consensus       184 VTLS~eEY~~Ls~rA~EaEel-A~kRVaaA~aqVeaAKaSE~e~L~RLEea~ke  236 (336)
                      +-...++-..|+...+.+++- -+.|-..-..+++..+..... .--|.++.++
T Consensus       366 ~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~re  418 (546)
T PF07888_consen  366 AEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCN-RVQLSENRRE  418 (546)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHH
Confidence            445566777787777665543 344444445566665554433 1245555554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.27  E-value=13  Score=42.66  Aligned_cols=78  Identities=21%  Similarity=0.202  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHH
Q 035694           18 DLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEE   95 (336)
Q Consensus        18 ~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~   95 (336)
                      .+..+..++..+...+..++.....+......++.++.....++..+..+....+-.+..|..++.....++..+...
T Consensus       689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  766 (1163)
T COG1196         689 ELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEE  766 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356666677777777777777777777777777777666666666666666666665555555554444444444333

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.18  E-value=5.6  Score=38.27  Aligned_cols=65  Identities=12%  Similarity=0.086  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035694          109 ALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCI  173 (336)
Q Consensus       109 ~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~L  173 (336)
                      .+..|..|...|+........++..+..+.+.-...+.....++..-...+-+++++--.++..|
T Consensus        90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i  154 (239)
T COG1579          90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEI  154 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555666666666666666666543444443

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=94.04  E-value=5.1  Score=37.20  Aligned_cols=116  Identities=16%  Similarity=0.229  Sum_probs=105.6

Q ss_pred             HHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 035694           54 LERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSN  133 (336)
Q Consensus        54 LekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~k  133 (336)
                      |.--+.-+..|.+....+...|......|..+..-+.++...-..++.-+..|...|+.+..-+..+...+.-++.++..
T Consensus        62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e  141 (188)
T PF05335_consen   62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAE  141 (188)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555667788888888999999999999999999999988888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          134 LKQVLRLKRQKLRTSQLALRATRIESEACRASAAEA  169 (336)
Q Consensus       134 lkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~A  169 (336)
                      -.+-++.++.-+..+...|..++.+.+..+.++-.|
T Consensus       142 K~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA  177 (188)
T PF05335_consen  142 KTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKA  177 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999985444

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=93.93  E-value=5.6  Score=37.31  Aligned_cols=146  Identities=17%  Similarity=0.211  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-------hHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhh
Q 035694           20 EAKTAELVKTKAELKRAKDN-------AMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSK   92 (336)
Q Consensus        20 ~s~~~ELeeaK~~Lekak~E-------~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~   92 (336)
                      ..++.+|+.+...+..+...       ...+-.-+.+|..-|.-+-..|....++...+...+..++..++.....+..+
T Consensus         4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~l   83 (237)
T PF00261_consen    4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVL   83 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445554444444444333       33344444444444444445555555555555555555555555555555555


Q ss_pred             HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694           93 KEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS  165 (336)
Q Consensus        93 ~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS  165 (336)
                      .......-+.+..|-..|..+..-++.+-.....+...+..+..+++.+..-+..++.++...-.++..+...
T Consensus        84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~  156 (237)
T PF00261_consen   84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNN  156 (237)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence            5555555567777777788887777777777777777777888888888888888888877777777666443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=93.90  E-value=3  Score=46.11  Aligned_cols=147  Identities=21%  Similarity=0.254  Sum_probs=72.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh---------------HHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHH
Q 035694           19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKP---------------LIDELERLKATLASDKNRCSMSNMIVSELQAELD   83 (336)
Q Consensus        19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaes---------------Lr~ELekeK~eLa~lKere~~asa~V~sLe~eL~   83 (336)
                      |.-+..|.+-.+.+|+..-..+...+.+.+.               ..++|...+..+-.++..-...-..|..|+.+| 
T Consensus         5 l~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-   83 (775)
T PF10174_consen    5 LERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-   83 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-
Confidence            3344455555555555555555555555444               222333333333333333345556666777777 


Q ss_pred             hhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694           84 STTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACR  163 (336)
Q Consensus        84 ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAk  163 (336)
                      ++..++.-.+..-..+......++. |+.+...+..+..+       ...+..|++..+..+..++.++.....+.+++-
T Consensus        84 r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E-------~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~  155 (775)
T PF10174_consen   84 RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAE-------RERLQRELERLRKTLEELQLRIETQQQTLDKAD  155 (775)
T ss_pred             HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666665544443333333333333 44444444444443       334444455555555556666666666666655


Q ss_pred             HHHHHHHHHhh
Q 035694          164 ASAAEALRCIG  174 (336)
Q Consensus       164 ASea~Al~~Lk  174 (336)
                      .+--.-...|+
T Consensus       156 eei~kL~e~L~  166 (775)
T PF10174_consen  156 EEIEKLQEMLQ  166 (775)
T ss_pred             HHHHHHHHHHh
Confidence            55444444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=93.85  E-value=15  Score=42.04  Aligned_cols=75  Identities=19%  Similarity=0.221  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhH
Q 035694           19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKK   93 (336)
Q Consensus        19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~   93 (336)
                      +.....+|......+.....+...+......+...+...+..+..++-........+..+..++......+..+.
T Consensus       669 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  743 (1163)
T COG1196         669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELE  743 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666666666666666666666666666666666655555555555555555555544444433

>PRK11637 AmiB activator; Provisional

Probab=93.45  E-value=9.7  Score=38.52  Aligned_cols=79  Identities=10%  Similarity=0.181  Sum_probs=56.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHH
Q 035694           16 TSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKE   94 (336)
Q Consensus        16 ~~~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~   94 (336)
                      ..-+..+..++++....|..+..+...+-.-...|..+|......+..+..........|..|+.+|...+.+|...+.
T Consensus        46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~  124 (428)
T PRK11637         46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER  124 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456777777777777777777777777777777777777777777777777777777777777777777666655443

>PRK09039 hypothetical protein; Validated

Probab=93.34  E-value=6.1  Score=39.40  Aligned_cols=48  Identities=23%  Similarity=0.185  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          106 LSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALR  153 (336)
Q Consensus       106 L~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~  153 (336)
                      +...+.++..++...+.....++-.+..|+++++.-+..+..++..|.
T Consensus       114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~  161 (343)
T PRK09039        114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALD  161 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444333333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=92.05  E-value=21  Score=39.20  Aligned_cols=157  Identities=17%  Similarity=0.189  Sum_probs=74.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHH---------
Q 035694           18 DLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKS---------   88 (336)
Q Consensus        18 ~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~e---------   88 (336)
                      .......|++..|.+|...+.-...||.-+.+|-+-=-..|.+|..+|+....-...+.+|....++-++-         
T Consensus       419 a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~  498 (697)
T PF09726_consen  419 AISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA  498 (697)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788888899998888888777777544433222333333333333333333334444433333332         


Q ss_pred             --------HhhhHHHHHHhhHhHHHHHH-H----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694           89 --------IMSKKEEEVNATMMIKELSQ-A----LAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRAT  155 (336)
Q Consensus        89 --------Le~~~~~E~kar~~~~eL~~-~----Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa  155 (336)
                              |+.--..|.+++-...+-.. .    ...-..-+|..|.....+..|+.+|+.|+-+..-.+.++|..++..
T Consensus       499 eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l  578 (697)
T PF09726_consen  499 EERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL  578 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    22222222222211111000 0    0000022344455555555666666666666666666666666544


Q ss_pred             HHH-HHHHHHH--HHHHHHHhh
Q 035694          156 RIE-SEACRAS--AAEALRCIG  174 (336)
Q Consensus       156 ~kE-~EAAkAS--ea~Al~~Lk  174 (336)
                      ++- -|--+-.  =..||.+|+
T Consensus       579 r~~~~e~~~~~e~L~~aL~amq  600 (697)
T PF09726_consen  579 RKYEKESEKDTEVLMSALSAMQ  600 (697)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHH
Confidence            442 2211222  245566666

; GO: 0016021 integral to membrane

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.99  E-value=7.4  Score=33.47  Aligned_cols=47  Identities=19%  Similarity=0.237  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          107 SQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALR  153 (336)
Q Consensus       107 ~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~  153 (336)
                      ...|..+..++..++......+.++..++..+...+.....-+..|.
T Consensus        58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le  104 (132)
T PF07926_consen   58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLE  104 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            44455555555555555444444444444444444444444343333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>TIGR00606 rad50 rad50

Probab=91.46  E-value=33  Score=39.90  Aligned_cols=74  Identities=9%  Similarity=0.106  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHhhhh------hhHHHHHHHHHHHHHhHHhhccch--hhhhhhHHHHHHhhHHHHh
Q 035694           19 LEAKTAELVKTKAELKRAKDNAMQSWLDS------KPLIDELERLKATLASDKNRCSMS--NMIVSELQAELDSTTKSIM   90 (336)
Q Consensus        19 l~s~~~ELeeaK~~Lekak~E~~~lr~aa------esLr~ELekeK~eLa~lKere~~a--sa~V~sLe~eL~ktk~eLe   90 (336)
                      +..+..+|++....|.+.+.+...+....      .-+..++...+..+..+.......  +.++..|+.++.....+|.
T Consensus       760 l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~  839 (1311)
T TIGR00606       760 IQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELD  839 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHH
Confidence            33444445555555555555554442222      223777777777777765544432  3456778888877777777


Q ss_pred             hh
Q 035694           91 SK   92 (336)
Q Consensus        91 ~~   92 (336)
                      .+
T Consensus       840 ~l  841 (1311)
T TIGR00606       840 TV  841 (1311)
T ss_pred             HH
Confidence            76

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=90.93  E-value=25  Score=37.66  Aligned_cols=51  Identities=20%  Similarity=0.125  Sum_probs=30.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhcc
Q 035694           19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCS   69 (336)
Q Consensus        19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~   69 (336)
                      +..+.+|.++..........+..+++.-++.|..+|...+.+...|++...
T Consensus       145 lE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k  195 (546)
T PF07888_consen  145 LEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK  195 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555666666666666666666666666666665554433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=90.84  E-value=26  Score=41.03  Aligned_cols=148  Identities=13%  Similarity=0.105  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHh--------hccchhhhhhhHHHHHHhhHHHHh
Q 035694           19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKN--------RCSMSNMIVSELQAELDSTTKSIM   90 (336)
Q Consensus        19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKe--------re~~asa~V~sLe~eL~ktk~eLe   90 (336)
                      -.++..=|+.++...+++-....-++..+..+++=|....+..+.+++        -...+.-.|..|-.+|+..-..|.
T Consensus      1449 ~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~ 1528 (1758)
T KOG0994|consen 1449 QQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLP 1528 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc
Confidence            344555566666666666666666666666666655555555444433        122233445555555544444433


Q ss_pred             hhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 035694           91 SKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARS--------------NLKQVLRLKRQKLRTSQLALRATR  156 (336)
Q Consensus        91 ~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~--------------klkeEaEqaKa~i~taE~RL~Aa~  156 (336)
                      -|-+-=.+.+.++..    -..|.++++.|++.|+..+..+.              ++..-|+++-..+.-++..|--+.
T Consensus      1529 nVd~IL~~T~~di~r----a~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~ 1604 (1758)
T KOG0994|consen 1529 NVDAILSRTKGDIAR----AENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQ 1604 (1758)
T ss_pred             cHHHHHHhhhhhHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            332222222222111    11223333333333333322222              223334444455555566666666


Q ss_pred             HHHHHHHHHHHHHH
Q 035694          157 IESEACRASAAEAL  170 (336)
Q Consensus       157 kE~EAAkASea~Al  170 (336)
                      .+..+|...+..|-
T Consensus      1605 ~~t~~aE~~~~~a~ 1618 (1758)
T KOG0994|consen 1605 EETAAAEKLATSAT 1618 (1758)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666655544443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=89.93  E-value=27  Score=36.35  Aligned_cols=141  Identities=13%  Similarity=0.127  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhH
Q 035694           24 AELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMI  103 (336)
Q Consensus        24 ~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~  103 (336)
                      ..|++...+|......+...|--...|..+|...+.+++.+......+...+..++..|......|..+...+.+.+...
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L  117 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL  117 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            66888888888888888888888888888888888888888888888888888889888888888888888887777888


Q ss_pred             HHHHHHHHHH-----------HHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          104 KELSQALAET-----------RQE---LEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRA  164 (336)
Q Consensus       104 ~eL~~~Lqql-----------~~E---aE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkA  164 (336)
                      ..+-.++++.           ..+   ..+...--..+-.+.......+.++...+......+.+-..++.....
T Consensus       118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~  192 (420)
T COG4942         118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLS  192 (420)
T ss_pred             HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888774           122   233333334445555566666666666666666666666666654443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=89.74  E-value=17  Score=35.81  Aligned_cols=114  Identities=15%  Similarity=0.132  Sum_probs=60.3

Q ss_pred             hhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHH
Q 035694           46 DSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATD  125 (336)
Q Consensus        46 aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~  125 (336)
                      .-..|...++.++.....|..........++.|.........++...+.....   .-..=+..|..+..++........
T Consensus       150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e---~~~~D~~eL~~lr~eL~~~~~~i~  226 (325)
T PF08317_consen  150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE---IESCDQEELEALRQELAEQKEEIE  226 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhcCHHHHHHHHHHHHHHHHHHH
Confidence            34455556666666666666666666666676666666666666655544321   111123344455555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          126 EERRARSNLKQVLRLKRQKLRTSQLALRATRIESEAC  162 (336)
Q Consensus       126 ~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAA  162 (336)
                      ..+.++..++.+...-...+..........+.+|..+
T Consensus       227 ~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~  263 (325)
T PF08317_consen  227 AKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA  263 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555544544444444444444433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=89.73  E-value=22  Score=35.00  Aligned_cols=49  Identities=12%  Similarity=-0.012  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhcc
Q 035694           21 AKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCS   69 (336)
Q Consensus        21 s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~   69 (336)
                      .+...++.++............+......|+.....+..++..|++...
T Consensus       153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~  201 (325)
T PF08317_consen  153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE  201 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444455555555566666666666666666666666666666665543

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=89.13  E-value=49  Score=38.20  Aligned_cols=180  Identities=13%  Similarity=0.157  Sum_probs=91.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHH-hhhHHHH
Q 035694           18 DLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSI-MSKKEEE   96 (336)
Q Consensus        18 ~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eL-e~~~~~E   96 (336)
                      .+.++.+.+.+.+.+.+-...|...++.++.-++.+...++.+.......-...-..+--|+-.+...+..+ ..+...-
T Consensus       317 k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~  396 (1074)
T KOG0250|consen  317 KLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSEL  396 (1074)
T ss_pred             hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence            345555666666666666666666666666666666666665555443332222222222222222222222 2222222


Q ss_pred             HHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 035694           97 VNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS-----------  165 (336)
Q Consensus        97 ~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS-----------  165 (336)
                      .+.......|...+..+......++.+-+.-++++..-..+....+-.+.+..-+++--..++...+..           
T Consensus       397 ~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~  476 (1074)
T KOG0250|consen  397 EERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFGPN  476 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcchh
Confidence            233334444444444444444444444444444555555555556666666677777777777776666           


Q ss_pred             HHHHHHHhhcc------ccCC--CCceeecHHHHHHHHHH
Q 035694          166 AAEALRCIGIS------ETDG--AITVQMTQEEYHALKRR  197 (336)
Q Consensus       166 ea~Al~~Lk~S------e~~~--~~~VTLS~eEY~~Ls~r  197 (336)
                      -...|.+|...      .+-+  |..|||.-..|.....+
T Consensus       477 m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~  516 (1074)
T KOG0250|consen  477 MPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIER  516 (1074)
T ss_pred             hHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHH
Confidence            22334555411      1111  46799988888765443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.04  E-value=52  Score=38.42  Aligned_cols=106  Identities=21%  Similarity=0.175  Sum_probs=68.6

Q ss_pred             hhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 035694           71 SNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETR-------QELEALKLATDEERRARSNLKQVLRLKRQ  143 (336)
Q Consensus        71 asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~-------~EaE~AK~ea~~areE~~klkeEaEqaKa  143 (336)
                      -...+....++++-+.++|..+...+........++...|+...       .++...+......+.|+..+..++...+.
T Consensus       491 ~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~  570 (1293)
T KOG0996|consen  491 LLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRK  570 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHH
Confidence            34444555566666666666666666666666666666666644       44455555555566666666667777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhcc
Q 035694          144 KLRTSQLALRATRIESEACRAS---------AAEALRCIGIS  176 (336)
Q Consensus       144 ~i~taE~RL~Aa~kE~EAAkAS---------ea~Al~~Lk~S  176 (336)
                      ....+...|......++.++.+         ...||-.++.+
T Consensus       571 e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kes  612 (1293)
T KOG0996|consen  571 EERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKES  612 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Confidence            7777777777888888888886         44555555543

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=88.62  E-value=21  Score=36.16  Aligned_cols=124  Identities=20%  Similarity=0.237  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHhHHHhhhhhhHHHHHHHHHHH----HHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHH
Q 035694           30 KAELKRAKDNAMQSWLDSKPLIDELERLKAT----LASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKE  105 (336)
Q Consensus        30 K~~Lekak~E~~~lr~aaesLr~ELekeK~e----La~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~e  105 (336)
                      +.-|+.++.-...+.......+..|.++-.+    |+.+..||..-......|=.+....+.+|..++.+-..+...+.+
T Consensus       219 R~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~  298 (359)
T PF10498_consen  219 RSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSE  298 (359)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            3444445555555555555556666665554    445567778888888888888888888898888888888888999


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          106 LSQALAETRQELEALKLATDEERR------ARSNLKQVLRLKRQKLRTSQLALR  153 (336)
Q Consensus       106 L~~~Lqql~~EaE~AK~ea~~are------E~~klkeEaEqaKa~i~taE~RL~  153 (336)
                      ++..|.+++.+.++.|.+.+.--.      =+.++|+-+-.-|..|.+|.+|+-
T Consensus       299 ~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIG  352 (359)
T PF10498_consen  299 RTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIG  352 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            999999999999998887764311      234555666666666666666653

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PHA02562 46 endonuclease subunit; Provisional

Probab=88.53  E-value=32  Score=35.34  Aligned_cols=64  Identities=13%  Similarity=0.113  Sum_probs=38.9

Q ss_pred             HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHH
Q 035694           32 ELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEE   95 (336)
Q Consensus        32 ~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~   95 (336)
                      +++..+.+...+......|..++.+++.++..++..-..-...+..|+.++......+......
T Consensus       214 ~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~  277 (562)
T PHA02562        214 NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKV  277 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666667777777777777776554444445555666666666665554433

>PRK02224 chromosome segregation protein; Provisional

Probab=87.38  E-value=49  Score=36.21  Aligned_cols=37  Identities=19%  Similarity=0.202  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          126 EERRARSNLKQVLRLKRQKLRTSQLALRATRIESEAC  162 (336)
Q Consensus       126 ~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAA  162 (336)
                      ..+.++..+..++......+.+.+..|.....+++..
T Consensus       360 ~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el  396 (880)
T PRK02224        360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEEL  396 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444455555555555555444444433

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.99  E-value=50  Score=37.27  Aligned_cols=145  Identities=15%  Similarity=0.224  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHH-------HhhhHHH
Q 035694           23 TAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKS-------IMSKKEE   95 (336)
Q Consensus        23 ~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~e-------Le~~~~~   95 (336)
                      .--|-+++..|..++.++..+...-+..++|+..+++.|-.++++.......-+-|+.+|....+.       +..+.++
T Consensus       457 s~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa  536 (1118)
T KOG1029|consen  457 SGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAA  536 (1118)
T ss_pred             hhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHH
Confidence            344556777777888888888888888899999999999999999998888888899988776553       2222222


Q ss_pred             HHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 035694           96 EVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRI-ESEACRASAAEALRCIG  174 (336)
Q Consensus        96 E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~k-E~EAAkASea~Al~~Lk  174 (336)
                      -.+...+..-|...|+.++.|       .+.-.++..-..-.+..-|..+.+..+.++-..+ +-+--+..+..++..++
T Consensus       537 ~~~ke~irq~ikdqldelskE-------~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~  609 (1118)
T KOG1029|consen  537 RRKKELIRQAIKDQLDELSKE-------TESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIG  609 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222223333344444444444       4444445555555555555666777777777666 77777888888888887

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=86.70  E-value=19  Score=30.86  Aligned_cols=33  Identities=24%  Similarity=0.319  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHhHHhhccchhhhhhhHHHHHHh
Q 035694           52 DELERLKATLASDKNRCSMSNMIVSELQAELDS   84 (336)
Q Consensus        52 ~ELekeK~eLa~lKere~~asa~V~sLe~eL~k   84 (336)
                      .++..+..++..++.........+..+..+|..
T Consensus         3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~   35 (132)
T PF07926_consen    3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLES   35 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555444444444444444443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=86.43  E-value=34  Score=33.37  Aligned_cols=23  Identities=13%  Similarity=0.210  Sum_probs=17.7

Q ss_pred             hhhhhhhhHHHHHHHHHHHhhhh
Q 035694          313 KKRRTSIFHQIKDFIVRSITRLF  335 (336)
Q Consensus       313 ~~~~~s~~~~~~~~~~~~~~~~~  335 (336)
                      .-.+.+|++-|++=|++.+.+-|
T Consensus       398 ~~~~~~~~~~~l~~~~~~~~~~~  420 (423)
T TIGR01843       398 KTGERTVIEYLLKPITDSVQEAL  420 (423)
T ss_pred             EeCCccHHHHHHHHHHHHHHHHh
Confidence            34667888888888888887776

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK09039 hypothetical protein; Validated

Probab=86.42  E-value=38  Score=33.88  Aligned_cols=54  Identities=13%  Similarity=0.041  Sum_probs=24.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          102 MIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRAT  155 (336)
Q Consensus       102 ~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa  155 (336)
                      ...+....++.|.++++.+|.-......++..+++.....+..|..++.+|..+
T Consensus       131 ~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444455555555555444444444444444444444444444444444

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=86.34  E-value=49  Score=36.94  Aligned_cols=114  Identities=19%  Similarity=0.272  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHh
Q 035694           23 TAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMM  102 (336)
Q Consensus        23 ~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~  102 (336)
                      ..+|.-.+..+.....+...+...+.-|..|| +-..++.+|.+....+..-..+|.. |+.+...+..++..-.+....
T Consensus        52 ~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~E  129 (775)
T PF10174_consen   52 AAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRE  129 (775)
T ss_pred             HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHH
Confidence            34455556666666666667777888888888 8888888888887777777777777 888887777777666666667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 035694          103 IKELSQALAETRQELEALKLATDEERRARSNLKQVL  138 (336)
Q Consensus       103 ~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEa  138 (336)
                      +..|..+|..+...++..+..-....+++.++...+
T Consensus       130 l~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L  165 (775)
T PF10174_consen  130 LERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML  165 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777754

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK02224 chromosome segregation protein; Provisional

Probab=85.84  E-value=59  Score=35.62  Aligned_cols=15  Identities=33%  Similarity=0.419  Sum_probs=7.6

Q ss_pred             cHHHHHHHHHHHHHH
Q 035694          187 TQEEYHALKRRAEEE  201 (336)
Q Consensus       187 S~eEY~~Ls~rA~Ea  201 (336)
                      ..+.|..|...+.+.
T Consensus       535 ~~~~~~~l~~e~~~l  549 (880)
T PRK02224        535 KRERAEELRERAAEL  549 (880)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344555555555444

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=85.84  E-value=7  Score=39.50  Aligned_cols=89  Identities=20%  Similarity=0.238  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHh------HH
Q 035694           31 AELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMM------IK  104 (336)
Q Consensus        31 ~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~------~~  104 (336)
                      ..|+++..-...|-.-.++|..+.-..+..|+.++++-..++..|..+..+|.....+|+.++..=.+....      +.
T Consensus       252 ~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv  331 (359)
T PF10498_consen  252 KTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLV  331 (359)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence            355677777788999999999999999999999999999999999999999999999999877543333222      23


Q ss_pred             HHHHHHHHHHHHHHH
Q 035694          105 ELSQALAETRQELEA  119 (336)
Q Consensus       105 eL~~~Lqql~~EaE~  119 (336)
                      .|..+|.+|..|.-+
T Consensus       332 ~IKqAl~kLk~EI~q  346 (359)
T PF10498_consen  332 KIKQALTKLKQEIKQ  346 (359)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            466666766666554

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=84.67  E-value=60  Score=37.45  Aligned_cols=211  Identities=13%  Similarity=0.079  Sum_probs=109.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHH
Q 035694           18 DLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEV   97 (336)
Q Consensus        18 ~l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~   97 (336)
                      -|.-+++||+.++..++..+.+...-....+.|..|.+.+..++...++....-...+.+|..++......+..+...-.
T Consensus       788 rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~  867 (1174)
T KOG0933|consen  788 RLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVK  867 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence            35667777777777777777676667777777777777777777777776666666666666666666665555544444


Q ss_pred             HhhHhHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694           98 NATMMIKELSQ-------ALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEAL  170 (336)
Q Consensus        98 kar~~~~eL~~-------~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al  170 (336)
                      ++...+.++..       .|..+..+-+....+......+..++.-++..-...-..+..++...+++.+=--     .-
T Consensus       868 ~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~-----~e  942 (1174)
T KOG0933|consen  868 KAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG-----DE  942 (1174)
T ss_pred             HHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh-----HH
Confidence            44443333333       3333333334444444444444444444433333322222222222222221100     00


Q ss_pred             HHhh---ccccCC-CCceeecHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 035694          171 RCIG---ISETDG-AITVQMTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLR  236 (336)
Q Consensus       171 ~~Lk---~Se~~~-~~~VTLS~eEY~~Ls~rA~EaEelA~kRVaaA~aqVeaAKaSE~e~L~RLEea~ke  236 (336)
                      ..+=   +..-+- +..+---.++...|.-+-..-+.-.+++|   |.-++-+..-++..-.+.+-+.+.
T Consensus       943 k~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~---m~mle~~E~~~~~lk~k~~~Ie~D 1009 (1174)
T KOG0933|consen  943 KRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKN---MDMLERAEEKEAALKTKKEIIEKD 1009 (1174)
T ss_pred             HHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            0100   000000 22334456777777777777777777765   445555555555555555555544

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=84.58  E-value=75  Score=37.51  Aligned_cols=50  Identities=6%  Similarity=0.123  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          107 SQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATR  156 (336)
Q Consensus       107 ~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~  156 (336)
                      ..+|+++...+..+.......++++.-+..-+-.+-..+..++.+++...
T Consensus      1583 ~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1583 QDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555555555555555443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=84.47  E-value=21  Score=40.67  Aligned_cols=166  Identities=19%  Similarity=0.209  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 035694           52 DELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRAR  131 (336)
Q Consensus        52 ~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~  131 (336)
                      .||++.+..+..+.+=-+.--..+.+|+-+|.+++.+..-+++...+-..-|.|       ..+-.|-+-...+.+.+.+
T Consensus       255 ~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad-------~ad~iEmaTldKEmAEERa  327 (1243)
T KOG0971|consen  255 KELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMAD-------TADAIEMATLDKEMAEERA  327 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHH
Confidence            589999999999999888888889999999999998877666665444444444       4555566666667777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH--HHHhhc---------------cccCCCCceeecH----
Q 035694          132 SNLKQVLRLKRQKLRTSQLALRATRIESEACRAS--AAEA--LRCIGI---------------SETDGAITVQMTQ----  188 (336)
Q Consensus       132 ~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS--ea~A--l~~Lk~---------------Se~~~~~~VTLS~----  188 (336)
                      .-|..|++..+-.+..++.-|.-...|++--.-.  ...+  +.+|..               +.+...+.+-+..    
T Consensus       328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~  407 (1243)
T KOG0971|consen  328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEK  407 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            7888888888888889999998888888753222  1111  122210               1000011222211    


Q ss_pred             --HHHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHHhhHH
Q 035694          189 --EEYHAL---KRRAEEEASLAEWRVSVSMEQREGVEASRD  224 (336)
Q Consensus       189 --eEY~~L---s~rA~EaEelA~kRVaaA~aqVeaAKaSE~  224 (336)
                        .|..+|   ..+...--+.++..|+.-..||+||=-.|-
T Consensus       408 k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~  448 (1243)
T KOG0971|consen  408 KNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEE  448 (1243)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Confidence              122222   223334445677889999999999876653

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=84.09  E-value=62  Score=34.33  Aligned_cols=201  Identities=14%  Similarity=0.090  Sum_probs=124.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHH-------HhhhhhhHHHHHHHHHHHHHhHHhhccc---hhhhhhhHHHHHHhhHH
Q 035694           18 DLEAKTAELVKTKAELKRAKDNAMQ-------SWLDSKPLIDELERLKATLASDKNRCSM---SNMIVSELQAELDSTTK   87 (336)
Q Consensus        18 ~l~s~~~ELeeaK~~Lekak~E~~~-------lr~aaesLr~ELekeK~eLa~lKere~~---asa~V~sLe~eL~ktk~   87 (336)
                      .+..+...++.+=..|++-...-..       +.....-++..+..+..++..+++.=..   --..+..|+.+|.....
T Consensus       283 ~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~  362 (569)
T PRK04778        283 KNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEK  362 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHH
Confidence            3444455555544444433332222       3333344444444555555555554111   12347778888888888


Q ss_pred             HHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 035694           88 SIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS--  165 (336)
Q Consensus        88 eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS--  165 (336)
                      .+......=.......+++...++.+....+.....-....+.+..++.+-..++..+......|....+.++-..-.  
T Consensus       363 ~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgi  442 (569)
T PRK04778        363 QYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGL  442 (569)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            877655554555556888888888888888888888888888888888888888888888888888777766655322  


Q ss_pred             ----------HHHHHHHhhccccCCCCceee-cHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035694          166 ----------AAEALRCIGISETDGAITVQM-TQE-EYHALKRRAEEEASLAEWRVSVSMEQREGVE  220 (336)
Q Consensus       166 ----------ea~Al~~Lk~Se~~~~~~VTL-S~e-EY~~Ls~rA~EaEelA~kRVaaA~aqVeaAK  220 (336)
                                ...-+..|...-..  +.|-| ..+ +|.....+...-....+-=|.+|..--....
T Consensus       443 p~~y~~~~~~~~~~i~~l~~~L~~--g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iq  507 (569)
T PRK04778        443 PEDYLEMFFEVSDEIEALAEELEE--KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQ  507 (569)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      22334444421111  44655 344 7888888888877777665555544333333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=83.53  E-value=79  Score=37.84  Aligned_cols=44  Identities=11%  Similarity=0.055  Sum_probs=26.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Q 035694           19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLA   62 (336)
Q Consensus        19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa   62 (336)
                      ...+...|+.+..+|.++.+....+-.-..+|..+++..+.-+.
T Consensus       295 k~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyle  338 (1486)
T PRK04863        295 LYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN  338 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666666666666666666655544433

>smart00787 Spc7 Spc7 kinetochore protein

Probab=83.15  E-value=51  Score=32.72  Aligned_cols=110  Identities=15%  Similarity=0.100  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhh----HhHHHHHHHHHHHHHHHHHHHHh
Q 035694           48 KPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNAT----MMIKELSQALAETRQELEALKLA  123 (336)
Q Consensus        48 esLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar----~~~~eL~~~Lqql~~EaE~AK~e  123 (336)
                      ..|-..++.++.+...|...+...+..++.|....+..+.++..++.....-.    +.+..+...|.....+.+..+..
T Consensus       147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~  226 (312)
T smart00787      147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKK  226 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555555555555555555555555555555444432211    12223333344444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          124 TDEERRARSNLKQVLRLKRQKLRTSQLALRATRI  157 (336)
Q Consensus       124 a~~areE~~klkeEaEqaKa~i~taE~RL~Aa~k  157 (336)
                      ...-+.++..+...++.........+..+..+.+
T Consensus       227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~  260 (312)
T smart00787      227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEK  260 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=82.87  E-value=56  Score=34.12  Aligned_cols=75  Identities=15%  Similarity=0.055  Sum_probs=57.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhHHHhh----------------hhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHH
Q 035694           17 SDLEAKTAELVKTKAELKRAKDNAMQSWL----------------DSKPLIDELERLKATLASDKNRCSMSNMIVSELQA   80 (336)
Q Consensus        17 ~~l~s~~~ELeeaK~~Lekak~E~~~lr~----------------aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~   80 (336)
                      ..+.-+..||+.+...+..++..+..|++                .+..|..+|...+.+|+.|+.-..-.+-.|..|..
T Consensus       242 D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~  321 (434)
T PRK15178        242 ERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSA  321 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHH
Confidence            34667888899999999888888887774                45667788888888888887767777788888888


Q ss_pred             HHHhhHHHHhh
Q 035694           81 ELDSTTKSIMS   91 (336)
Q Consensus        81 eL~ktk~eLe~   91 (336)
                      ++......|..
T Consensus       322 rI~aLe~QIa~  332 (434)
T PRK15178        322 KIKVLEKQIGE  332 (434)
T ss_pred             HHHHHHHHHHH
Confidence            87777666654

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=82.78  E-value=80  Score=36.54  Aligned_cols=200  Identities=14%  Similarity=0.111  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhh---ccchhhhhhhHHHHHHhhHHHHhhhHHHHHH
Q 035694           22 KTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNR---CSMSNMIVSELQAELDSTTKSIMSKKEEEVN   98 (336)
Q Consensus        22 ~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKer---e~~asa~V~sLe~eL~ktk~eLe~~~~~E~k   98 (336)
                      ...++.+++.+|+........+..-..++...+-+-..++..|+.-   ..+....+..|..++.....+|+.....-.+
T Consensus       680 l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~  759 (1074)
T KOG0250|consen  680 LENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEK  759 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555666666666666666666666666666666666666652   3334445555555555555555544433333


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHH
Q 035694           99 ATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTS-------QLALR---ATRIESEACRASAAE  168 (336)
Q Consensus        99 ar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~ta-------E~RL~---Aa~kE~EAAkASea~  168 (336)
                      .++.+..+....+++...-+.-+....-....+..+..|+-.+-..+...       |..+.   -.++.+|+=+.-   
T Consensus       760 l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~~~K~~l~~l~~~E~~~~~---  836 (1074)
T KOG0250|consen  760 LKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRHYEDKLKSRLEELKQKEVEKVN---  836 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHh---
Confidence            33333333333333333333333333333333333333333222222220       00111   011111111110   


Q ss_pred             HHHH-hhccc-cCC---C-Cceee---------cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHH
Q 035694          169 ALRC-IGISE-TDG---A-ITVQM---------TQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDF  225 (336)
Q Consensus       169 Al~~-Lk~Se-~~~---~-~~VTL---------S~eEY~~Ls~rA~EaEelA~kRVaaA~aqVeaAKaSE~e  225 (336)
                       +.. +..+. .+.   | .+|-|         =.+|-..|.+..+.+++.-+-...-.-+-.++.+.-..+
T Consensus       837 -~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~k~  907 (1074)
T KOG0250|consen  837 -LEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKELKKE  907 (1074)
T ss_pred             -hhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhh
Confidence             000 00000 010   1 11222         246778888899999888888777777766666655544

>TIGR00606 rad50 rad50

Probab=82.66  E-value=96  Score=36.20  Aligned_cols=6  Identities=17%  Similarity=0.097  Sum_probs=2.1

Q ss_pred             HHHHhh
Q 035694           80 AELDST   85 (336)
Q Consensus        80 ~eL~kt   85 (336)
                      .+|...
T Consensus       888 ~~L~el  893 (1311)
T TIGR00606       888 EQLVEL  893 (1311)
T ss_pred             HHHHHH
Confidence            333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=82.43  E-value=66  Score=37.17  Aligned_cols=138  Identities=15%  Similarity=0.146  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhh
Q 035694           21 AKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNAT  100 (336)
Q Consensus        21 s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar  100 (336)
                      .-..+|.++.++|..++..+-....-.+.=.+|.+.+.-++..+..-..+......+++..+..-.+++....++     
T Consensus       784 ~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~k-----  858 (1174)
T KOG0933|consen  784 NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAK-----  858 (1174)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            345678889999998888888888888888899999999999998888777777777777777777776654433     


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          101 MMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS  165 (336)
Q Consensus       101 ~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS  165 (336)
                        +........++..++..-+..-..---++..+-...+.........++.++---.|+.-..-.
T Consensus       859 --v~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e  921 (1174)
T KOG0933|consen  859 --VDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESE  921 (1174)
T ss_pred             --HHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhh
Confidence              222333333444444444443333333444445555555555555555555444444443333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=82.25  E-value=1.1e+02  Score=35.66  Aligned_cols=152  Identities=19%  Similarity=0.220  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHH-HH
Q 035694           20 EAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEE-VN   98 (336)
Q Consensus        20 ~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E-~k   98 (336)
                      ..++.+|..+..-|..+......+-.........+...+.++..+......+...+..|..+....+.++....... ..
T Consensus       603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  682 (1201)
T PF12128_consen  603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQ  682 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566777777777777776666666666677777777777777777777777777777777777777666554443 23


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035694           99 ATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCI  173 (336)
Q Consensus        99 ar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~L  173 (336)
                      .......+...|.++..+.+.....-.....+...  +-...-..........+.+...++.+.+.....=++.|
T Consensus       683 ~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~--e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~l  755 (1201)
T PF12128_consen  683 IEEQLNELEEELKQLKQELEELLEELKEQLKELRN--ELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKEL  755 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455556666666666665555544333322221  11112222333344444444455555444433333333

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=82.06  E-value=62  Score=37.31  Aligned_cols=107  Identities=21%  Similarity=0.290  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 035694           50 LIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERR  129 (336)
Q Consensus        50 Lr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~are  129 (336)
                      +|+||++.+..+...++.+..----+..|+.+|..--.+|..+-.-=...+..|+++-..+-.+.++.+++-..-.....
T Consensus       395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR  474 (1200)
T KOG0964|consen  395 IRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR  474 (1200)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777776655556666665555554444443333345556666666666667777777666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          130 ARSNLKQVLRLKRQKLRTSQLALRATR  156 (336)
Q Consensus       130 E~~klkeEaEqaKa~i~taE~RL~Aa~  156 (336)
                      |=.+++..++..+..+..++-.|.++.
T Consensus       475 EE~~l~~~i~~~~~dl~~~~~~L~~~~  501 (1200)
T KOG0964|consen  475 EEKKLRSLIANLEEDLSRAEKNLRATM  501 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            667788888888888888887777654

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=81.72  E-value=1.2e+02  Score=35.78  Aligned_cols=125  Identities=14%  Similarity=0.175  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHH
Q 035694           25 ELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIK  104 (336)
Q Consensus        25 ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~  104 (336)
                      .....+..+...-.+-...+-....+...+.+...++...+..............-++..+..+|..+.......+....
T Consensus       385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~  464 (1293)
T KOG0996|consen  385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD  464 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555554444444455555555555555555555555555554445555555555555555544444433333333


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          105 ELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLAL  152 (336)
Q Consensus       105 eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL  152 (336)
                      ++   +..+.++++..+.+...-+.++..+....-.++..++.+|..|
T Consensus       465 e~---~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel  509 (1293)
T KOG0996|consen  465 EI---LDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESEL  509 (1293)
T ss_pred             HH---HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32   2233333444444444444444433333333333333333333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=81.51  E-value=94  Score=34.57  Aligned_cols=92  Identities=20%  Similarity=0.183  Sum_probs=43.8

Q ss_pred             hhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 035694           66 NRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKL  145 (336)
Q Consensus        66 ere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i  145 (336)
                      .+...+...|..|..+|...+.++...+...   ......+...++.+...+..........++.+..+..++..+...+
T Consensus       359 ~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~---~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A  435 (717)
T PF09730_consen  359 CKYKVAVSEVIQLKAELKALKSKYNELEERY---KQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLA  435 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3334444445555555555555555444422   2222333344444444444444444444445555555555555555


Q ss_pred             HHHHHHHHHHHHHHH
Q 035694          146 RTSQLALRATRIESE  160 (336)
Q Consensus       146 ~taE~RL~Aa~kE~E  160 (336)
                      ...+..|.+|+-|+-
T Consensus       436 ~E~q~~LnsAQDELv  450 (717)
T PF09730_consen  436 GESQGSLNSAQDELV  450 (717)
T ss_pred             HhHHHHHHHHHHHHH
Confidence            555555555554443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=81.01  E-value=53  Score=31.37  Aligned_cols=38  Identities=24%  Similarity=0.187  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Q 035694           22 KTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKA   59 (336)
Q Consensus        22 ~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~   59 (336)
                      +..+|...+..|+.++-.-..|..-+.+|..||.-.+.
T Consensus       101 le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~  138 (312)
T PF00038_consen  101 LEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ  138 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence            33444444444444444444455555555555555444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=80.86  E-value=1.5e+02  Score=36.58  Aligned_cols=70  Identities=21%  Similarity=0.196  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHH
Q 035694           20 EAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSI   89 (336)
Q Consensus        20 ~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eL   89 (336)
                      +.-+.-.++.-.+|+-+..+...+...+-.|...|+.++..++.++.........+..|...+.-....+
T Consensus      1445 ~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v 1514 (1930)
T KOG0161|consen 1445 AEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRV 1514 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444455555555555555555555555554444455555544444444333

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=80.70  E-value=52  Score=31.13  Aligned_cols=92  Identities=14%  Similarity=0.146  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhh
Q 035694           21 AKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNAT  100 (336)
Q Consensus        21 s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar  100 (336)
                      -.+--|.++-.+|..=-.|+.+|+...-.++..|..--..+..++.....-+..+.-.+.+|.+.+.+.+....+-..-.
T Consensus        14 LLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le   93 (202)
T PF06818_consen   14 LLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLE   93 (202)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhH
Confidence            34578889999999888999999999999999998888888888887777777777888888888877766665543333


Q ss_pred             HhHHHHHHHHHH
Q 035694          101 MMIKELSQALAE  112 (336)
Q Consensus       101 ~~~~eL~~~Lqq  112 (336)
                      ..+.+|...+..
T Consensus        94 ~El~~Lr~~l~~  105 (202)
T PF06818_consen   94 AELAELREELAC  105 (202)
T ss_pred             HHHHHHHHHHHh
Confidence            334444444443

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=80.67  E-value=41  Score=29.95  Aligned_cols=56  Identities=20%  Similarity=0.107  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhH
Q 035694           31 AELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTT   86 (336)
Q Consensus        31 ~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk   86 (336)
                      ..|.+++.+...|.-=+.+|-.||+....++..+----..+-..|..|+.+|.-.+
T Consensus        10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt   65 (140)
T PF10473_consen   10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELT   65 (140)
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555556666655555555543333333344444444444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=80.26  E-value=85  Score=33.30  Aligned_cols=157  Identities=14%  Similarity=0.108  Sum_probs=90.4

Q ss_pred             chhHHHHHHHHHHHHH-----HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhh
Q 035694           17 SDLEAKTAELVKTKAE-----LKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMS   91 (336)
Q Consensus        17 ~~l~s~~~ELeeaK~~-----Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~   91 (336)
                      .-+..++..|..+...     |+.+.+....+-.-.+.|-+-|+++.................+..+...+..+..+|+.
T Consensus       256 ~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~  335 (569)
T PRK04778        256 KEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDR  335 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666664433     44677777777777778888888887777777777777777777777777777777777


Q ss_pred             hHHH----HHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694           92 KKEE----EVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAA  167 (336)
Q Consensus        92 ~~~~----E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea  167 (336)
                      +...    +.. -.....+...|..+....+........-......+..+.+.-...+...+.........+...+..+.
T Consensus       336 l~~sY~l~~~e-~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~  414 (569)
T PRK04778        336 VKQSYTLNESE-LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDEL  414 (569)
T ss_pred             HHHccccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6654    211 12233334444444444444333333333334445555555555555555555555555555555555


Q ss_pred             HHHHHhh
Q 035694          168 EALRCIG  174 (336)
Q Consensus       168 ~Al~~Lk  174 (336)
                      .|-..|+
T Consensus       415 eAr~kL~  421 (569)
T PRK04778        415 EAREKLE  421 (569)
T ss_pred             HHHHHHH
Confidence            5544443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=80.17  E-value=1.3e+02  Score=35.47  Aligned_cols=68  Identities=26%  Similarity=0.312  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035694          107 SQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIG  174 (336)
Q Consensus       107 ~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk  174 (336)
                      ...|.++.+.++++...+......++......++.+..+..++.++..+.++++.+......+.....
T Consensus       332 ~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~~~a~~~~  399 (1353)
T TIGR02680       332 AEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAG  399 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            35555666666666666666666666667777777777777777777777776655554444444444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	336
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 27/160 (16%), Positives = 64/160 (40%), Gaps = 11/160 (6%)

Query: 6    KERKENPGRNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDK 65
            +ER  +   N ++ E K   L K K + +             +    ELE++K  L  + 
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069

Query: 66   NRCSMSNM-----------IVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETR 114
            +                   +++ + EL +    +  +  ++ NA   I+EL   +++ +
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129

Query: 115  QELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRA 154
            ++LE+ K A ++  + + +L + L   + +L  +      
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTAT 1169

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 41/254 (16%), Positives = 91/254 (35%), Gaps = 30/254 (11%)

Query: 14   RNTSDLEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNM 73
               ++ E     L   K EL+                I+E E     L ++K +      
Sbjct: 906  ELYAEAEEMRVRLAAKKQELEEILHEMEA-------RIEEEEERSQQLQAEKKKM---QQ 955

Query: 74   IVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSN 133
             + +L+ +L+    +    + E+V A   IK++   +     +   L           S+
Sbjct: 956  QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015

Query: 134  LKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDGAITVQMTQEEYHA 193
            L   L  + +K +     L   + + E+  +     L+             + +++E   
Sbjct: 1016 LTTNLAEEEEKAKN----LTKLKNKHESMISELEVRLK-----------KEEKSRQELEK 1060

Query: 194  LKRRAEEEASLAEWRVSVSMEQREGVE---ASRDFALSRLQETRLRRRSRMSVKDEKIAG 250
            +KR+ E E+S    +++    Q   ++   A ++  L           S+ +   +KI  
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120

Query: 251  QEAR--EMAEELDS 262
             E+   ++ E+L+S
Sbjct: 1121 LESHISDLQEDLES 1134

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 44.4 bits (104), Expect = 4e-05
 Identities = 36/240 (15%), Positives = 78/240 (32%), Gaps = 8/240 (3%)

Query: 25  ELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDS 84
           +  K  A + R      +   D+ P    L + +      +N   +S++ V  ++     
Sbjct: 590 DFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQR 649

Query: 85  TTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQK 144
           T  ++    +  +  T   +E +      R E EA      ++   +S        + +K
Sbjct: 650 TRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQS--------EAEK 701

Query: 145 LRTSQLALRATRIESEACRASAAEALRCIGISETDGAITVQMTQEEYHALKRRAEEEASL 204
            R   L L A  +  E+   + AEA      +  +G  +V   + +  AL    E E   
Sbjct: 702 ARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELER 761

Query: 205 AEWRVSVSMEQREGVEASRDFALSRLQETRLRRRSRMSVKDEKIAGQEAREMAEELDSKI 264
            +    + +               +L     ++   M+        ++      E+  K+
Sbjct: 762 VKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKL 821

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 49/367 (13%), Positives = 95/367 (25%), Gaps = 125/367 (34%)

Query: 18  DLEAK-TAELVK---TKAELK---RAKDNAMQSWLDSKPLIDELER---------LKATL 61
           + + K   ++ K   +K E+     +KD    +      L   L           ++  L
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR----LFWTLLSKQEEMVQKFVEEVL 87

Query: 62  ASD--------KNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAET 113
             +        K      +M+      + D          +  V+      +L QAL E 
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 114 RQE---------------LEALKLATDEE-----------------RRARSNLKQVLRLK 141
           R                 + AL +    +                     + L+ + +L 
Sbjct: 148 RPAKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 142 RQ---------------KLRTSQLALRATRIESEA------------CRASAAEA--LRC 172
            Q               KLR   +     R+                  A A  A  L C
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 173 --------IGISET-DGAITVQMTQEEYHALKRRAEEEASLAEW-RVSVSMEQREGVEAS 222
                     +++    A T  ++ + +       E ++ L ++         RE +  +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 223 -----------RDFALSRLQETR------LRRRSRMSVKDEKIAGQEAREMAEEL----- 260
                      RD  L+     +      L      S+    +   E R+M + L     
Sbjct: 327 PRRLSIIAESIRDG-LATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVFPP 383

Query: 261 DSKIKAE 267
            + I   
Sbjct: 384 SAHIPTI 390

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	336
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.19
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.69
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	94.13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	93.92
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.44
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	92.13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	91.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	88.26
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	86.63
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	86.39
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	86.36
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	84.7
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	81.23
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	80.95
3hrn_A	64	Transient receptor potential (Trp) channel subfami	80.32

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.19  E-value=0.033  Score=51.16  Aligned_cols=116  Identities=9%  Similarity=0.083  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHH--HHHHHHHHHHHHHHHHhHHHH
Q 035694           50 LIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKEL--SQALAETRQELEALKLATDEE  127 (336)
Q Consensus        50 Lr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL--~~~Lqql~~EaE~AK~ea~~a  127 (336)
                      |..+|..+...++.++.+.......+..++.++.+...+|..+...-.+.+..+...  ++.++.+..|.+.++......
T Consensus        30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~l  109 (256)
T 3na7_A           30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQA  109 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444444444444444443333333221  345555556666666666555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          128 RRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRAS  165 (336)
Q Consensus       128 reE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkAS  165 (336)
                      ..++..+...++..+..+..++..+.....++...++.
T Consensus       110 E~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~  147 (256)
T 3na7_A          110 NREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL  147 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55655666555555555555555555555555444444

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.69  E-value=0.28  Score=44.97  Aligned_cols=15  Identities=7%  Similarity=0.246  Sum_probs=11.9

Q ss_pred             CceeecHHHHHHHHH
Q 035694          182 ITVQMTQEEYHALKR  196 (336)
Q Consensus       182 ~~VTLS~eEY~~Ls~  196 (336)
                      -.++||.-.|..+..
T Consensus       204 C~~~lppq~~~~i~~  218 (256)
T 3na7_A          204 CFIRLNDKIYTEVLT  218 (256)
T ss_dssp             TCCBCCHHHHHHHHH
T ss_pred             CCeeeCHHHHHHHHC
Confidence            358999999988764

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=94.13  E-value=2.7  Score=36.68  Aligned_cols=108  Identities=19%  Similarity=0.246  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 035694           53 ELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEALKLATDEERRARS  132 (336)
Q Consensus        53 ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~  132 (336)
                      |..++-..|.+..+|...+.+.|..|+.+|..+...|.++...+.++-.........|..|+..+..|-.-++.+...+.
T Consensus        22 EvaR~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~  101 (155)
T 2efr_A           22 EVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT  101 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34447788889999999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          133 NLKQVLRLKRQKLRTSQLALRATRIESE  160 (336)
Q Consensus       133 klkeEaEqaKa~i~taE~RL~Aa~kE~E  160 (336)
                      +|..+++...-.+.....+...+..+++
T Consensus       102 kLEk~id~lEd~L~~~Kek~~~i~~eLd  129 (155)
T 2efr_A          102 KLEKSIDDLEDELYAQKLKYKAISEEMK  129 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888888888888

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=93.92  E-value=0.16  Score=55.84  Aligned_cols=76  Identities=17%  Similarity=0.201  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHH
Q 035694           19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKE   94 (336)
Q Consensus        19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~   94 (336)
                      +.....+|.+.+.+|.++.+....+......|..++...+..+...+.........+..|..++......+..+..
T Consensus       859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~  934 (1184)
T 1i84_S          859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEA  934 (1184)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677888888888877777777777777777777766666665555544555555555555555444444433

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.87  E-value=1.1  Score=36.04  Aligned_cols=99  Identities=9%  Similarity=0.098  Sum_probs=81.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 035694          101 MMIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDG  180 (336)
Q Consensus       101 ~~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk~Se~~~  180 (336)
                      +.|.-|...|+.|..+.+.|.-.++.....+..+.+...+....|..+.-|++.+--+++-+...-..|...|...+.. 
T Consensus         2 ~~MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~-   80 (101)
T 3u1c_A            2 GHMDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEEN-   80 (101)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            3577889999999999999999999999999999999999999999999999999999998887766676666644321 


Q ss_pred             CCceeecHHHHHHHHHHHHHHHH
Q 035694          181 AITVQMTQEEYHALKRRAEEEAS  203 (336)
Q Consensus       181 ~~~VTLS~eEY~~Ls~rA~EaEe  203 (336)
                         .+-.-.+-.+|.||++-.|+
T Consensus        81 ---~~~aE~ev~~L~RriqllEE  100 (101)
T 3u1c_A           81 ---AAKAESEVASLNRRIQLVEE  100 (101)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHT
T ss_pred             ---HHHHHHHHHHHHHHHHHHcc
Confidence               23334567788888876653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.44  E-value=1.9  Score=42.70  Aligned_cols=44  Identities=16%  Similarity=0.188  Sum_probs=18.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          118 EALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEA  161 (336)
Q Consensus       118 E~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EA  161 (336)
                      ...+......+.+...++.+.+..+..+.....++....+|...
T Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~  569 (597)
T 3oja_B          526 QARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSL  569 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence            33333333333444444444444444444444444444444333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=92.13  E-value=2.5  Score=33.75  Aligned_cols=97  Identities=14%  Similarity=0.140  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 035694          102 MIKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIGISETDGA  181 (336)
Q Consensus       102 ~~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk~Se~~~~  181 (336)
                      .|.-|...|+-|..+.+.|--.++.....+..+.....+....|..+.-+++....+++-+......+...|...+.   
T Consensus         3 ~md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek---   79 (101)
T 3u59_A            3 SMEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEK---   79 (101)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            47778899999999999999999999999999999999999999999999999999999887776666666654331   


Q ss_pred             CceeecHHHHHHHHHHHHHHH
Q 035694          182 ITVQMTQEEYHALKRRAEEEA  202 (336)
Q Consensus       182 ~~VTLS~eEY~~Ls~rA~EaE  202 (336)
                       ..+-+-.|..+|.||++-.|
T Consensus        80 -~~~~AE~evasLnRriqllE   99 (101)
T 3u59_A           80 -KATDAEAEVASLNRRIQLVE   99 (101)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHHHHHHHc
Confidence             12334456778888887654

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=91.93  E-value=0.35  Score=53.24  Aligned_cols=18  Identities=28%  Similarity=0.482  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHhHH
Q 035694           25 ELVKTKAELKRAKDNAMQ   42 (336)
Q Consensus        25 ELeeaK~~Lekak~E~~~   42 (336)
                      |+.+.+..|.........
T Consensus       858 El~~L~~eL~el~~~L~~  875 (1184)
T 1i84_S          858 EMQAKDEELQRTKERQQK  875 (1184)
T ss_dssp             HCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.26  E-value=7.9  Score=38.23  Aligned_cols=48  Identities=27%  Similarity=0.315  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035694          103 IKELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQL  150 (336)
Q Consensus       103 ~~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~  150 (336)
                      ..+....++++..|.++.+...+.++..+..+++|....++.+...+.
T Consensus       532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~  579 (597)
T 3oja_B          532 ADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA  579 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555666666666666555555555443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=86.63  E-value=11  Score=30.18  Aligned_cols=51  Identities=18%  Similarity=0.180  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhcc
Q 035694           19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCS   69 (336)
Q Consensus        19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~   69 (336)
                      +..+++-+...|.+.+.+.+.+-.+..-+..+.....+.-.++..|..+..
T Consensus         4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~   54 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR   54 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            566677777777777777777777777777777777776677777666654

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=86.39  E-value=29  Score=42.76  Aligned_cols=45  Identities=16%  Similarity=0.122  Sum_probs=17.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHh
Q 035694           19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLAS   63 (336)
Q Consensus        19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~   63 (336)
                      +...+.||...+.-|+.-=+-...-...|+.|+.+|...+..|..
T Consensus      1908 l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~ 1952 (3245)
T 3vkg_A         1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDV 1952 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444333322222222233334444444444444443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=86.36  E-value=9.4  Score=29.23  Aligned_cols=71  Identities=11%  Similarity=0.100  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035694          104 KELSQALAETRQELEALKLATDEERRARSNLKQVLRLKRQKLRTSQLALRATRIESEACRASAAEALRCIG  174 (336)
Q Consensus       104 ~eL~~~Lqql~~EaE~AK~ea~~areE~~klkeEaEqaKa~i~taE~RL~Aa~kE~EAAkASea~Al~~Lk  174 (336)
                      ..|...|+.+..+.+.|.-.+..+...+..+.....+....|..+.-+++..--+++-+...-..|...|.
T Consensus         2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe   72 (81)
T 1ic2_A            2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE   72 (81)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677888888888888888888888888888888888888888888888888888887777666665554

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=84.70  E-value=86  Score=38.77  Aligned_cols=168  Identities=17%  Similarity=0.174  Sum_probs=84.2

Q ss_pred             HHHhhhhhhHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 035694           41 MQSWLDSKPLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQELEAL  120 (336)
Q Consensus        41 ~~lr~aaesLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~EaE~A  120 (336)
                      ..+......=+.||...+.-+..==++...+...|..|+.+|..-+-.|+...   .++..++..|.    .-+.+++.-
T Consensus      1902 ~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~---~ea~~~l~~i~----~~~~~ae~~ 1974 (3245)
T 3vkg_A         1902 NQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKN---EQANQKLKQMV----QDQQAAEIK 1974 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH----HHHHHHHHH
Confidence            34444445555666666665555567778899999999999999888887533   23344444444    334455554


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHH----HHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCceeecHHH
Q 035694          121 KLATDEERRARSNLKQVLRLKRQK----LRTSQ------LALRATRIESEACRASAAEALRCIGISETDGAITVQMTQEE  190 (336)
Q Consensus       121 K~ea~~areE~~klkeEaEqaKa~----i~taE------~RL~Aa~kE~EAAkASea~Al~~Lk~Se~~~~~~VTLS~eE  190 (336)
                      +..+...+.++.+...++...+..    ++.|+      .+|..+..++.++.+--..+-+.|+.-+    ..|.--..+
T Consensus      1975 k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le----~~l~~L~~~ 2050 (3245)
T 3vkg_A         1975 QKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALE----KSIATYKEE 2050 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            444444444433333333332222    12221      2233333333333222111111222111    234455677


Q ss_pred             HHHHHHHHHHHHHH---hhhHHHHHHHHHHHH
Q 035694          191 YHALKRRAEEEASL---AEWRVSVSMEQREGV  219 (336)
Q Consensus       191 Y~~Ls~rA~EaEel---A~kRVaaA~aqVeaA  219 (336)
                      |..+....+.-+..   ...|+..|..-|...
T Consensus      2051 ~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A         2051 YATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            87777666554433   445666666655554

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=81.23  E-value=19  Score=28.61  Aligned_cols=51  Identities=22%  Similarity=0.184  Sum_probs=35.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHhHHhhcc
Q 035694           19 LEAKTAELVKTKAELKRAKDNAMQSWLDSKPLIDELERLKATLASDKNRCS   69 (336)
Q Consensus        19 l~s~~~ELeeaK~~Lekak~E~~~lr~aaesLr~ELekeK~eLa~lKere~   69 (336)
                      +..+++-+...|.+.+.+-+.+-.+..-+..+.....+.-.++..|+.+..
T Consensus         4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq   54 (101)
T 3u59_A            4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK   54 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            456677777777777777777777777666666666666666666666544

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=80.95  E-value=21  Score=28.99  Aligned_cols=92  Identities=15%  Similarity=0.212  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHHHHhHHhhccchhhhhhhHHHHHHhhHHHHhhhHHHHHHhhHhHHHHHHHHHHHHH-HHHHHHHhHHHH
Q 035694           49 PLIDELERLKATLASDKNRCSMSNMIVSELQAELDSTTKSIMSKKEEEVNATMMIKELSQALAETRQ-ELEALKLATDEE  127 (336)
Q Consensus        49 sLr~ELekeK~eLa~lKere~~asa~V~sLe~eL~ktk~eLe~~~~~E~kar~~~~eL~~~Lqql~~-EaE~AK~ea~~a  127 (336)
                      ||+.+|+..+..+..|.......+..+..|..+|...       +..-..+......|...|..|+. =.++|..+...+
T Consensus         2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE-------~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a   74 (97)
T 2eqb_B            2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKE-------NELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA   74 (97)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566666666555544433333333333333322       22222333344445555555543 346677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 035694          128 RRARSNLKQVLRLKRQKLRT  147 (336)
Q Consensus       128 reE~~klkeEaEqaKa~i~t  147 (336)
                      +.+...+....++-++.|..
T Consensus        75 r~e~~~~e~kn~~L~~qL~d   94 (97)
T 2eqb_B           75 RKEKYAIEILNKRLTEQLRE   94 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            76666666666665555543

>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A

Probab=80.32  E-value=6.7  Score=29.75  Aligned_cols=48  Identities=15%  Similarity=0.290  Sum_probs=36.0

Q ss_pred             ecHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHhhhhhh
Q 035694          186 MTQEEYHALKRRAEEEASLAEWRVSVSMEQREGVEASRDFALSRLQETRLR--RRSRMSVK  244 (336)
Q Consensus       186 LS~eEY~~Ls~rA~EaEelA~kRVaaA~aqVeaAKaSE~e~L~RLEea~ke--~~~~~~~~  244 (336)
                      +|.+||+-|++|+-.-|-.    |..-+.||++       ++.+|+...+-  .||.+++|
T Consensus         3 VS~EEF~~L~rRVlqLE~s----l~gI~SqIDa-------V~~KL~~~Er~k~~~re~m~k   52 (64)
T 3hrn_A            3 VSYEEFQVLVRRVDRMEHS----IGSIVSKIDA-------VIVKLEIMERAKLKRREVLGR   52 (64)
T ss_dssp             CCHHHHHHHHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHH
Confidence            6899999999999877654    6677889988       77777777665  24445533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00