Citrus Sinensis ID: 035695

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
STLVEETEQKLTLAAPAAATLPPSSSRAVRLPVRPGFGTRGRKCVVRANHFMVQLAKRDIHHYDVSIDPEVTSQKINREIISQLINLYRLTNLGERIPAYDGMKSIYTAGPLPFESKEFIITLPDSDPRPSSSASPGTERQFRVVIRLASQPYVYTLQKFIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLMLLIFILSKLDFFFFSDLSRPLSDQVRLKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCMNFSTCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY
cccHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEEEEEEccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccEEEcccccccccccccccccEEEEEccccccccccccccccccEEEEEEEEccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEccEEEEcEEcccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHEEEEEEEEccccEEEEEEccccEEEEcccccEEEEcccccEEEEcccEEcccccccccEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEEcccccccccccEEEEcccccccEEEcccccccccHHHHHHHHHHHHHccccEEEEEcHHHHccccccccccEEEEEEEccccccccccccEEEEEEEEcccccccEEEEEEEEcccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccEEEc
cccEEHHHcHccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHHHcHHHccccccccccccEEEEccccccccEEEEEEEccccccccccccccccEEEEEEEEEEEEccHHHHHHHHHHHHHHHHHcccccccEcccccccccccccccccccEEEEccccccccccccccEEEEcccHHHHHcccccccHHHHHHHHcHHHHccccccHHHHHccEEEccccEEEEEEEccccEEEEccccccEEEcccccEEEccccEEEccEEEEEEEEEEccHcHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccEcEEEEccccEEEEEEEEccccccEcccHHHHHHEEEEEEEEEcccccEEcccccccccccccccEEEEEcccccccccccccccEEEEEEccccccccHEEEEEEccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccEEEEc
STLVEETEQKLTlaapaaatlppsssravrlpvrpgfgtrgrkcVVRANHFMVQLAKRdihhydvsidpevtsqKINREIISQLINLYRltnlgeripaydgmksiytagplpfeskefiitlpdsdprpsssaspgterQFRVVIRLASQPYVYTLQKFIQVLDVVLraapsekhtvvgrsffstdlgpmgqlgdgIEYWRGYFqslrptqfglslnigFSHYILYNLMLLIFILSKldffffsdlsrplsdqVRLKFGIQvadgltsvdarilpapmlkyhksgreasvnpdfgqwnminkkmfnggRVEVWTCmnfstclnqDVIGFCQRLVDMCNrkgmvfnrrpvipissynpyQIEKALVDVhnkttqpgkqLQLLIIIlpdvrgsygrIKRVCETELgivsqccqpkhassrnmqYFENVALKINVkvggrntvlddavqkriplvtdrptiifgadvthpqpgedsspSIVAVVASmdwpevtkYRGLVSAQAHNEEIIQDLYKSiqdpqrglvHGGMIRELLIAFKIstnrkpesiify
STLVEETEQkltlaapaaatlppsssravrlpvrpgfgtrgrkcvVRANHFMVQLAkrdihhydvsidpevtsqkiNREIISQLINLYRLTNLGERIPAYDGMKSIYTAGPLPFESKEFIITLPDsdprpsssaspgterqFRVVIRLASQPYVYTLQKFIQVLDVVLRAAPSEKhtvvgrsffstdlgpmgQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLMLLIFILSKLDFFFFSDLSRPLSDQVRLKFGIQvadgltsvdaRILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCMNFSTCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVKVGGrntvlddavqkriplvtdrptIIFGAdvthpqpgedSSPSIVAVVASMDWPEVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIafkistnrkpesiify
STLVEETEQKltlaapaaatlppsssRAVRLPVRPGFGTRGRKCVVRANHFMVQLAKRDIHHYDVSIDPEVTSQKINREIISQLINLYRLTNLGERIPAYDGMKSIYTAGPLPFESKEFIITLpdsdprpsssaspGTERQFRVVIRLASQPYVYTLQKFIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLMllifilskldffffsdlsRPLSDQVRLKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCMNFSTCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY
********************************VRPGFGTRGRKCVVRANHFMVQLAKRDIHHYDVSIDPEVTSQKINREIISQLINLYRLTNLGERIPAYDGMKSIYTAGPLPFESKEFIITL******************FRVVIRLASQPYVYTLQKFIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLMLLIFILSKLDFFFFSDLSRPLSDQVRLKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCMNFSTCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVT***********IVAVVASMDWPEVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKIST**********
*************************************GTRGRKCVVRANHFMVQLAKRDIHHYDVSIDPEVTSQKINREIISQLINLYRLTNLGERIPAYDGMKSIYTAGPLPFESKEFIITLPDSDPRPS****PGTERQFRVVIRLASQPYVYTLQKFIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLMLLIFILSKLDFFFFSDLSRPLSDQVRLKFGIQVADGLTSVDARILPAPMLKYH*******VNPDFGQWNMINKKMFNGGRVEVWTCMNFSTCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQP***SSPSIVAVVASMDWPEVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY
**********LTLAAPAAATLPPSSSRAVRLPVRPGFGTRGRKCVVRANHFMVQLAKRDIHHYDVSIDPEVTSQKINREIISQLINLYRLTNLGERIPAYDGMKSIYTAGPLPFESKEFIITLPD**************RQFRVVIRLASQPYVYTLQKFIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLMLLIFILSKLDFFFFSDLSRPLSDQVRLKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCMNFSTCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY
****************************VRLPVRPGFGTRGRKCVVRANHFMVQLAKRDIHHYDVSIDPEVTSQKINREIISQLINLYRLTNLGERIPAYDGMKSIYTAGPLPFESKEFIITLPDS**********GTERQFRVVIRLASQPYVYTLQKFIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLMLLIFILSKLDFFFFSDLSRPLSDQVRLKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCMNFSTCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQ*GEDSSPSIVAVVASMDWPEVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY
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STLVEETEQKLTLAAPAAATLPPSSSRAVRLPVRPGFGTRGRKCVVRANHFMVQLAKRDIHHYDVSIDPEVTSQKINREIISQLINLYRLTNLGERIPAYDGMKSIYTAGPLPFESKEFIITLPDSDPRPSSSASPGTERQFRVVIRLASQPYVYTLQKFIQVLDVVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLMLLIFILSKLDFFFFSDLSRPLSDQVRLKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCMNFSTCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query548 2.2.26 [Sep-21-2011]
Q9SJK3 997 Protein argonaute 5 OS=Ar yes no 0.534 0.293 0.651 1e-113
Q851R2 1058 Protein argonaute MEL1 OS yes no 0.538 0.278 0.639 1e-107
O04379 1048 Protein argonaute 1 OS=Ar no no 0.540 0.282 0.621 1e-104
Q7Y001 1049 Protein argonaute 12 OS=O no no 0.541 0.283 0.570 1e-103
Q7XSA2 1118 Protein argonaute 1B OS=O no no 0.540 0.264 0.615 1e-103
Q6EU14 1082 Protein argonaute 1A OS=O no no 0.531 0.268 0.619 1e-102
Q6K972 1011 Protein argonaute 1C OS=O no no 0.531 0.287 0.626 1e-101
Q9XGW1 988 Protein argonaute 10 OS=A no no 0.527 0.292 0.616 1e-100
Q69VD5 979 Protein argonaute PNH1 OS no no 0.531 0.297 0.620 8e-99
Q5Z5B2 1038 Protein argonaute 1D OS=O no no 0.531 0.280 0.599 3e-97
>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 Back     alignment and function desciption
 Score =  410 bits (1055), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/298 (65%), Positives = 235/298 (78%), Gaps = 5/298 (1%)

Query: 252 SDQVRLKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRV 311
           +D +  +FG+ V   L S++AR+LP PMLKYH SG+E  VNP  GQWNMI+KKM NG +V
Sbjct: 512 NDDLSKEFGMSVTTQLASIEARVLPPPMLKYHDSGKEKMVNPRLGQWNMIDKKMVNGAKV 571

Query: 312 EVWTCMNFSTCLNQDV-IGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHN 370
             WTC++FST +++ +   FC++L+ MC  KGM F  +P IP  S  P  IE+AL+D+H 
Sbjct: 572 TSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHK 631

Query: 371 KTTQPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALK 430
           +   PG  LQLLI+ILPDV GSYG+IKR+CETELGIVSQCCQP+  +  N QY ENVALK
Sbjct: 632 RA--PG--LQLLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALK 687

Query: 431 INVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEV 490
           INVK GGRNTVL+DA+++ IPL+TDRPTII GADVTHPQPGEDSSPSI AVVASMDWPE+
Sbjct: 688 INVKTGGRNTVLNDAIRRNIPLITDRPTIIMGADVTHPQPGEDSSPSIAAVVASMDWPEI 747

Query: 491 TKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY 548
            KYRGLVSAQAH EEIIQDLYK +QDPQRGLVH G+IRE  IAF+ +T + P+ IIFY
Sbjct: 748 NKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHSGLIREHFIAFRRATGQIPQRIIFY 805
Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates with siRNAs of various sizes, from 21-24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal cytosine. Probably involved in antiviral RNA silencing. Associates with siRNAs derived from cucumber mosaic virus (CMV). Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO5 function in RNA silencing.
Arabidopsis thaliana (taxid: 3702)
>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 Back     alignment and function description
>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 Back     alignment and function description
>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 Back     alignment and function description
>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 Back     alignment and function description
>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 Back     alignment and function description
>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query548
224054242 904 argonaute protein group [Populus trichoc 0.549 0.332 0.713 1e-124
224106886 987 argonaute protein group [Populus trichoc 0.571 0.317 0.675 1e-124
359479401 1038 PREDICTED: LOW QUALITY PROTEIN: protein 0.536 0.283 0.721 1e-124
297734872 1032 unnamed protein product [Vitis vinifera] 0.536 0.284 0.721 1e-124
255565533 987 eukaryotic translation initiation factor 0.536 0.297 0.712 1e-118
297826159 1001 hypothetical protein ARALYDRAFT_481718 [ 0.523 0.286 0.695 1e-117
222625570 794 hypothetical protein OsJ_12126 [Oryza sa 0.866 0.598 0.408 1e-115
449443600 987 PREDICTED: protein argonaute 5-like [Cuc 0.540 0.299 0.665 1e-114
449520607 984 PREDICTED: LOW QUALITY PROTEIN: protein 0.540 0.300 0.665 1e-114
30683679 997 Argonaute family protein [Arabidopsis th 0.534 0.293 0.651 1e-112
>gi|224054242|ref|XP_002298162.1| argonaute protein group [Populus trichocarpa] gi|222845420|gb|EEE82967.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/307 (71%), Positives = 248/307 (80%), Gaps = 6/307 (1%)

Query: 248 SRPLSDQVRLKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFN 307
           S  L+  VR +FGIQV + LTSVDAR+LP PMLKYH +GREA V+P  GQWNMINKKM N
Sbjct: 410 STSLNVLVRNEFGIQVKEELTSVDARVLPPPMLKYHDTGREARVDPHLGQWNMINKKMVN 469

Query: 308 GGRVEVWTCMNFSTCLNQDV-IGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALV 366
           GG+++ WTC+NFST +++D+   FC +L+DMCN KGM F+  P+I I S +   IEKAL 
Sbjct: 470 GGKIDFWTCVNFSTKVHRDLPFEFCWQLMDMCNSKGMEFHPDPIIQIHSADSRHIEKALH 529

Query: 367 DVHNKTT-----QPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNM 421
           DVH K T     Q GKQLQLLIIILPD  GSYG+IKR+CETELGIVSQCCQP+ A   + 
Sbjct: 530 DVHKKCTAKLANQKGKQLQLLIIILPDFSGSYGKIKRICETELGIVSQCCQPQQAKKLSK 589

Query: 422 QYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAV 481
           QY ENVALKINVK GGRNTVL+DA+Q+RIP VTD PTIIFGADVTHPQPGEDSSPSI AV
Sbjct: 590 QYLENVALKINVKAGGRNTVLNDAIQRRIPNVTDLPTIIFGADVTHPQPGEDSSPSIAAV 649

Query: 482 VASMDWPEVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRK 541
           VASMDWPEVTKYRGLVSAQAH EEIIQDLYK  QDPQ+GLVH GMIREL IAF+ ST +K
Sbjct: 650 VASMDWPEVTKYRGLVSAQAHREEIIQDLYKKYQDPQKGLVHSGMIRELFIAFRRSTGQK 709

Query: 542 PESIIFY 548
           P  IIFY
Sbjct: 710 PHRIIFY 716

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224106886|ref|XP_002314317.1| argonaute protein group [Populus trichocarpa] gi|222850725|gb|EEE88272.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359479401|ref|XP_002271699.2| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734872|emb|CBI17106.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255565533|ref|XP_002523757.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223537061|gb|EEF38697.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297826159|ref|XP_002880962.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] gi|297326801|gb|EFH57221.1| hypothetical protein ARALYDRAFT_481718 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|222625570|gb|EEE59702.1| hypothetical protein OsJ_12126 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|449443600|ref|XP_004139565.1| PREDICTED: protein argonaute 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449520607|ref|XP_004167325.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30683679|ref|NP_850110.1| Argonaute family protein [Arabidopsis thaliana] gi|322510009|sp|Q9SJK3.2|AGO5_ARATH RecName: Full=Protein argonaute 5 gi|330252961|gb|AEC08055.1| Argonaute family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query548
TAIR|locus:2057851 997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.534 0.293 0.651 4.2e-158
UNIPROTKB|Q851R2 1058 MEL1 "Protein argonaute MEL1" 0.538 0.278 0.639 1.4e-150
UNIPROTKB|Q69VD5 979 PHN1 "Protein argonaute PNH1" 0.540 0.302 0.613 1e-141
TAIR|locus:2170897 988 AGO10 "ARGONAUTE 10" [Arabidop 0.536 0.297 0.609 1.3e-137
UNIPROTKB|Q9HCK5 861 EIF2C4 "Protein argonaute-4" [ 0.505 0.321 0.378 2.2e-70
UNIPROTKB|F1SV64 861 EIF2C4 "Uncharacterized protei 0.505 0.321 0.378 2.2e-70
UNIPROTKB|F1P3Z1 847 EIF2C4 "Protein argonaute-4" [ 0.505 0.327 0.375 9.1e-70
MGI|MGI:1924100 861 Ago4 "argonaute RISC catalytic 0.505 0.321 0.375 1e-69
UNIPROTKB|F1LUQ5 860 Eif2c4 "Protein Eif2c4" [Rattu 0.505 0.322 0.378 1.6e-69
UNIPROTKB|Q4KLV6 884 eif2c4 "Protein argonaute-4" [ 0.505 0.313 0.375 3e-69
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1027 (366.6 bits), Expect = 4.2e-158, Sum P(2) = 4.2e-158
 Identities = 194/298 (65%), Positives = 235/298 (78%)

Query:   252 SDQVRLKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRV 311
             +D +  +FG+ V   L S++AR+LP PMLKYH SG+E  VNP  GQWNMI+KKM NG +V
Sbjct:   512 NDDLSKEFGMSVTTQLASIEARVLPPPMLKYHDSGKEKMVNPRLGQWNMIDKKMVNGAKV 571

Query:   312 EVWTCMNFSTCLNQDVIG-FCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHN 370
               WTC++FST +++ +   FC++L+ MC  KGM F  +P IP  S  P  IE+AL+D+H 
Sbjct:   572 TSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEHIEEALLDIHK 631

Query:   371 KTTQPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVALK 430
             +   PG  LQLLI+ILPDV GSYG+IKR+CETELGIVSQCCQP+  +  N QY ENVALK
Sbjct:   632 RA--PG--LQLLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALK 687

Query:   431 INVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEV 490
             INVK GGRNTVL+DA+++ IPL+TDRPTII GADVTHPQPGEDSSPSI AVVASMDWPE+
Sbjct:   688 INVKTGGRNTVLNDAIRRNIPLITDRPTIIMGADVTHPQPGEDSSPSIAAVVASMDWPEI 747

Query:   491 TKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY 548
              KYRGLVSAQAH EEIIQDLYK +QDPQRGLVH G+IRE  IAF+ +T + P+ IIFY
Sbjct:   748 NKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHSGLIREHFIAFRRATGQIPQRIIFY 805
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0048441 "petal development" evidence=RCA
GO:0048443 "stamen development" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HCK5 EIF2C4 "Protein argonaute-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SV64 EIF2C4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3Z1 EIF2C4 "Protein argonaute-4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1924100 Ago4 "argonaute RISC catalytic subunit 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1LUQ5 Eif2c4 "Protein Eif2c4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KLV6 eif2c4 "Protein argonaute-4" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AGO905
argonaute protein group (904 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query548
cd04657 426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 2e-96
PLN03202 900 PLN03202, PLN03202, protein argonaute; Provisional 7e-54
pfam02171 296 pfam02171, Piwi, Piwi domain 3e-31
smart00950 301 smart00950, Piwi, This domain is found in the prot 5e-30
PLN03202 900 PLN03202, PLN03202, protein argonaute; Provisional 3e-27
cd04658 448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 3e-18
cd02826 393 cd02826, Piwi-like, Piwi-like: PIWI domain 3e-17
pfam0869952 pfam08699, DUF1785, Domain of unknown function (DU 4e-15
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information 
 Score =  299 bits (767), Expect = 2e-96
 Identities = 113/299 (37%), Positives = 157/299 (52%), Gaps = 35/299 (11%)

Query: 258 KFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCM 317
           +FGI V+  + +V  R+LP P LKY       +V P  G WN+  KK   GG +  W  +
Sbjct: 5   EFGISVSKEMITVPGRVLPPPKLKYG--DSSKTVPPRNGSWNLRGKKFLEGGPIRSWAVL 62

Query: 318 NFSTCLNQ-----DVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKT 372
           NF+          D+  F  +LV      G+      +    +    ++E+    +    
Sbjct: 63  NFAGPRRSREERADLRNFVDQLVKTVIGAGI-----NITTAIASVEGRVEELFAKLKQA- 116

Query: 373 TQPGKQLQLLIIILPD-VRGSYGRIKRVCETELGIVSQCCQPKHASSR-NMQYFENVALK 430
              G+  QL+++ILP      YGRIKR+ +TELGI +QC   K  + + N QYF NVALK
Sbjct: 117 --KGEGPQLVLVILPKKDSDIYGRIKRLADTELGIHTQCVLAKKVTKKGNPQYFANVALK 174

Query: 431 INVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGE-DSSPSIVAVVASMDWPE 489
           IN+K+GG N  L+       PL+T  PT++ GADVTHP PG+   +PSI AVVAS+DW  
Sbjct: 175 INLKLGGINHSLEP---DIRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVASVDWHL 231

Query: 490 VTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY 548
             +Y   V  Q+H +EII DL               M+RELL AFK +T + PE II+Y
Sbjct: 232 -AQYPASVRLQSHRQEIIDDL-------------ESMVRELLRAFKKATGKLPERIIYY 276

Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 426
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 548
PLN03202 900 protein argonaute; Provisional 100.0
KOG1042 845 consensus Germ-line stem cell division protein Hiw 100.0
KOG1041 876 consensus Translation initiation factor 2C (eIF-2C 100.0
cd04657 426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd04658 448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826 393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02171 302 Piwi: Piwi domain; InterPro: IPR003165 This domain 99.96
cd04659 404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 99.85
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.63
COG1431 685 Argonaute homolog, implicated in RNA metabolism [T 96.07
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-85  Score=744.98  Aligned_cols=503  Identities=35%  Similarity=0.566  Sum_probs=407.4

Q ss_pred             cCCCCCCCCCCCCeEEEEeeEEEEEcC--CcceEEEEEEecC----CCCchHHHHHHHHHHHHHhhhccCCCCceeeeCC
Q 035695           30 RLPVRPGFGTRGRKCVVRANHFMVQLA--KRDIHHYDVSIDP----EVTSQKINREIISQLINLYRLTNLGERIPAYDGM  103 (548)
Q Consensus        30 ~~~~RP~~Gt~G~~i~l~tN~f~l~~~--~~~iy~Y~V~i~p----~~~~r~~~r~ii~~l~~~~~~~~~~~~~~~yDG~  103 (548)
                      .+++||+||+.|++|.|+||||+|.++  +..+|||+|+|+|    ++.++++++.|++++++++.. .+.+..++|||+
T Consensus        32 ~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~Dg~  110 (900)
T PLN03202         32 LPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSS-DLAGKDFAYDGE  110 (900)
T ss_pred             ccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHH-hhCCCceeecCc
Confidence            678899999999999999999999973  7789999999996    345577888999999887654 354447899999


Q ss_pred             CcEEecCCCCCCCceEEEEcCCCCC------------CCCCC------CCCCCCceEEEEEEeccccChhhHHHH-----
Q 035695          104 KSIYTAGPLPFESKEFIITLPDSDP------------RPSSS------ASPGTERQFRVVIRLASQPYVYTLQKF-----  160 (548)
Q Consensus       104 ~~lys~~~L~~~~~~~~v~~~~~~~------------~~~~~------~~~~~~~~~~V~i~~~~~i~~~~l~~~-----  160 (548)
                      ++|||+.+|+.+..++.|.+.++.+            +.+..      ....+++.|+|+|++++.+++++|.+|     
T Consensus       111 ~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~  190 (900)
T PLN03202        111 KSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQE  190 (900)
T ss_pred             cceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHHHcCCC
Confidence            9999999999866678887764210            00000      001246889999999999999988877     


Q ss_pred             -------HHHHHHHHhcCCCCC-ccccccccccCCCCCCccCCCcEEEEEeeeeeeecccceeEEEeecceeeeeccccH
Q 035695          161 -------IQVLDVVLRAAPSEK-HTVVGRSFFSTDLGPMGQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLMLL  232 (548)
Q Consensus       161 -------iq~lniilr~~~~~~-~~~vGr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LniD~s~~~f~~~~~l  232 (548)
                             ||+||++||+.++.. ++.+||+||.+..+...++++|+|+|+||++|||+++++++||+|++|++|+++++|
T Consensus       191 ~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l  270 (900)
T PLN03202        191 SENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPV  270 (900)
T ss_pred             CCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeeecCCcH
Confidence                   999999999999754 889999999866445567899999999999999999999999999999999999999


Q ss_pred             HHHHhhcc----------------ccccC----------------------------C-----------C----------
Q 035695          233 IFILSKLD----------------FFFFS----------------------------D-----------L----------  247 (548)
Q Consensus       233 ~d~l~~~~----------------~l~~r----------------------------d-----------~----------  247 (548)
                      +|+|.++.                +.|++                            +           .          
T Consensus       271 ~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~  350 (900)
T PLN03202        271 VDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKH  350 (900)
T ss_pred             HHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHH
Confidence            99987421                00110                            0           0          


Q ss_pred             -------------------------------C-------CCCChHH--------------H-------------------
Q 035695          248 -------------------------------S-------RPLSDQV--------------R-------------------  256 (548)
Q Consensus       248 -------------------------------~-------~~Ls~~~--------------r-------------------  256 (548)
                                                     +       +.|++.+              |                   
T Consensus       351 Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l  430 (900)
T PLN03202        351 RGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKSSNYDADPML  430 (900)
T ss_pred             cCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhCCCCchHH
Confidence                                           0       0122221              1                   


Q ss_pred             hhccccccCCceEeceEecCCCeEeeccCCcceeecCCCCccccccceeecCcccceEEEEEeCCCCchhHHHHHHHHHH
Q 035695          257 LKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCMNFSTCLNQDVIGFCQRLVD  336 (548)
Q Consensus       257 ~~~Gl~i~~~~~~v~arvL~~P~i~~~~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~f~~~l~~  336 (548)
                      +.|||+|+++|++|+||+||||+|.|+++.   .+.|.+|+|++++.+|+.|+++.+|++++|+++.  .+++|++.|.+
T Consensus       431 ~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~--~~~~f~~~l~~  505 (900)
T PLN03202        431 RSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSARC--DIRHLVRDLIK  505 (900)
T ss_pred             HHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCch--hHHHHHHHHHH
Confidence            789999999999999999999999998753   2457899999999999999999999999886442  46899999999


Q ss_pred             HHHhcCCcccCCCcccccc------CChhhHHHHHHHHHHhccCCCCCceEEEEEeCCC-CCc-hhhhhhhcccccceee
Q 035695          337 MCNRKGMVFNRRPVIPISS------YNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDV-RGS-YGRIKRVCETELGIVS  408 (548)
Q Consensus       337 ~~~~~G~~i~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~li~vilp~~-~~~-Y~~iK~~~d~~~gI~T  408 (548)
                      .|+.+||.+..|+......      ...+.++..++.+.+++.   ..++|+|||||++ +.+ |+.||++||+++||+|
T Consensus       506 ~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~T  582 (900)
T PLN03202        506 CGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLP---GPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVT  582 (900)
T ss_pred             HHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhcc---CCCeEEEEEEcCCCCcchHHHHHHHHhhccCccc
Confidence            9999999998754331111      012345666666666542   5689999999974 567 9999999999999999


Q ss_pred             eeecccccCCCcHHHHHHHHHHhhhccCCeeeeeccccccCCCCcCCCCeEEEeeeccCCCCCCCCCCeEEEEEEecCCC
Q 035695          409 QCCQPKHASSRNMQYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWP  488 (548)
Q Consensus       409 Qcv~~~~~~k~~~~~~~ni~lKiN~KLGG~n~~l~~~~~~~~p~l~~~~tMiiG~DV~H~~~~~~~~pSiaa~VaS~d~~  488 (548)
                      |||...   +.++||+.||+||||+||||+||.+..+....+|++.+.+|||||+||+||++++...|||||||||+||.
T Consensus       583 Qcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~VaS~d~~  659 (900)
T PLN03202        583 QCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVVSSRQWP  659 (900)
T ss_pred             EEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCceEEEEeccCcc
Confidence            999654   35789999999999999999999987543345788877899999999999998864469999999999977


Q ss_pred             ccccceeeeecccccchhhhccccccCCCCCCcchhhHHHHHHHHHHHHc-CCCCCceEeC
Q 035695          489 EVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKIST-NRKPESIIFY  548 (548)
Q Consensus       489 ~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~y~~~n-g~lP~~IIiY  548 (548)
                      .+++|++.+++|.+++|++++|++++.+.    .+++|+.++|+.|++.| |.+|++||||
T Consensus       660 ~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~----~~~~m~~~~L~~~~~~~~~~~P~~Iiiy  716 (900)
T PLN03202        660 LISRYRASVRTQSPKVEMIDSLFKPVGDK----DDDGIIRELLLDFYTSSGKRKPEQIIIF  716 (900)
T ss_pred             cccceeeEEEecCCCceeeeehhcccccc----chHHHHHHHHHHHHHHcCCCCCceeEEE
Confidence            89999999999999999999986544442    35899999999999876 6999999998

>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query548
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 1e-42
4f3t_A 861 Human Argonaute-2 - Mir-20a Complex Length = 861 1e-39
4ei1_A 859 Crystal Structure Of Human Argonaute2 Length = 859 1e-39
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 4e-37
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 5e-37
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 1e-36
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 1e-34
2yhb_A 437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 2e-12
2yha_A 388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 2e-12
3luc_A138 Crystal Structure Of Mid Domain From Hago2 Length = 1e-10
3luk_A138 Crystal Structure Of Mid Domain From Hago2 Length = 2e-10
4g0m_A150 Crystal Structure Of Arabidopsis Thaliana Ago2 Mid 9e-09
4f1n_A 1046 Crystal Structure Of Kluyveromyces Polysporus Argon 6e-06
2xdy_A145 Crystal Structure Of The N. Crassa Qde-2 Ago Mid Do 7e-05
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure 
Iteration: 1

 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 106/142 (74%), Gaps = 5/142 (3%)
Query: 302 NKKMFNGGRVEVWTCMNFSTCLNQDVIG-FCQRLVDMCNRKGMVFNRRPVIPISSYNPYQ 360
           +KKM NG +V  WTC++FST +++ +   FC++L+ MC  KGM F  +P IP  S  P  
Sbjct: 2   DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFISCPPEH 61
Query: 361 IEKALVDVHNKTTQPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRN 420
           IE+AL+D+H +   PG  LQLLI+ILPDV GSYG+IKR+CETELGIVSQCCQP+  +  N
Sbjct: 62  IEEALLDIHKRA--PG--LQLLIVILPDVTGSYGKIKRICETELGIVSQCCQPRQVNKLN 117
Query: 421 MQYFENVALKINVKVGGRNTVL 442
            QY ENVALKINVK GGRNTVL
Sbjct: 118 KQYMENVALKINVKTGGRNTVL 139
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query548
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 6e-67
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 4e-55
2yha_A 388 Post-transcriptional gene silencing protein QDE-2; 8e-55
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 1e-54
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 5e-36
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 6e-53
1yvu_A 706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 1e-50
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 6e-44
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 2e-42
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 2e-10
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 5e-41
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 3e-39
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 1e-38
2w42_A 427 PIWI, putative uncharacterized protein; RNAI, RISC 6e-21
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 2e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  231 bits (590), Expect = 6e-67
 Identities = 105/300 (35%), Positives = 141/300 (47%), Gaps = 25/300 (8%)

Query: 252 SDQVRLKFGIQVADGLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRV 311
           +D    +FGI V D +T V  R+L  P + Y     +A   P  G W+M NK+   G  +
Sbjct: 392 TDPYVREFGIMVKDEMTDVTGRVLQPPSILYG-GRNKAIATPVQGVWDMRNKQFHTGIEI 450

Query: 312 EVWTCMNFSTCLN---QDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDV 368
           +VW    F+         +  F ++L  +    GM    +P     +     +E     +
Sbjct: 451 KVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHL 510

Query: 369 HNKTTQPGKQLQLLIIILPDVRGSYGRIKRVCETELGIVSQCCQPKHASSRNMQYFENVA 428
            N        LQL+++ILP     Y  +KRV +T LG+ +QC Q K+      Q   N+ 
Sbjct: 511 KNT----YAGLQLVVVILPGKTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLC 566

Query: 429 LKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWP 488
           LKINVK+GG N +L     +  P V  +P I  GADVTHP  G+   PSI AVV SMD  
Sbjct: 567 LKINVKLGGVNNILLP---QGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-A 622

Query: 489 EVTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY 548
              +Y   V  Q H +EIIQDL               M+RELLI F  ST  KP  IIFY
Sbjct: 623 HPNRYCATVRVQQHRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFY 669
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query548
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 100.0
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 100.0
1yvu_A 706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 100.0
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 100.0
2yha_A 388 Post-transcriptional gene silencing protein QDE-2; 100.0
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 100.0
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 100.0
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 99.96
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 99.96
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 99.95
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 99.95
2w42_A 427 PIWI, putative uncharacterized protein; RNAI, RISC 99.92
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Back     alignment and structure
Probab=100.00  E-value=1.1e-94  Score=818.64  Aligned_cols=500  Identities=37%  Similarity=0.613  Sum_probs=409.3

Q ss_pred             CCcCCCCCCCCccCCCCCCCCCCCCeEEEEeeEEEEEcCCcceEEEEEEecCCCCchHHHHHHHHHHHHHhhhccCCCCc
Q 035695           18 AATLPPSSSRAVRLPVRPGFGTRGRKCVVRANHFMVQLAKRDIHHYDVSIDPEVTSQKINREIISQLINLYRLTNLGERI   97 (548)
Q Consensus        18 ~~~~~~~~~~~~~~~~RP~~Gt~G~~i~l~tN~f~l~~~~~~iy~Y~V~i~p~~~~r~~~r~ii~~l~~~~~~~~~~~~~   97 (548)
                      .+.+||+++....+|+||++||.|++|.|+||||+++++++.+|||||+|+|+..+++++++++++++++++.+.|++..
T Consensus        14 ~~~~~~~~~~~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~   93 (861)
T 4f3t_A           14 PAPPPPIQGYAFKPPPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRK   93 (861)
T ss_dssp             -----------CCCCBCCCCCCCSEEEEEEESEEEEECCSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCC
T ss_pred             CCCCCccccccccCCCCCCCCCCCcEEEEEeeeEEEECCCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCce
Confidence            44556777788999999999999999999999999999888899999999999989999999999999887544577767


Q ss_pred             eeeeCCCcEEecCCCCCCCceEEEEcCCCCCCCCCCCCCCCCceEEEEEEeccccChhhHHHH------------HHHHH
Q 035695           98 PAYDGMKSIYTAGPLPFESKEFIITLPDSDPRPSSSASPGTERQFRVVIRLASQPYVYTLQKF------------IQVLD  165 (548)
Q Consensus        98 ~~yDG~~~lys~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~i~~~~l~~~------------iq~ln  165 (548)
                      ++|||+++|||+.+|++++.++++.+....        ..+++.|+|+|++++++++++|.+|            ||+||
T Consensus        94 ~afDG~~~l~s~~~L~~~~~~~~~~v~~~~--------~~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Ln  165 (861)
T 4f3t_A           94 PVFDGRKNLYTAMPLPIGRDKVELEVTLPG--------EGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALD  165 (861)
T ss_dssp             CEECSSSEEEESSCCSCSSCEEEEECCC---------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHH
T ss_pred             EEEcCcceEEECCcCCCCCcceEEEEecCC--------CCCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHH
Confidence            899999999999999976544444332111        1356889999999999999887765            99999


Q ss_pred             HHHhcCCCCCccccccccccCCCCCCccCCCcEEEEEeeeeeeecccceeEEEeecceeeeeccccHHHHHhhc-c----
Q 035695          166 VVLRAAPSEKHTVVGRSFFSTDLGPMGQLGDGIEYWRGYFQSLRPTQFGLSLNIGFSHYILYNLMLLIFILSKL-D----  240 (548)
Q Consensus       166 iilr~~~~~~~~~vGr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LniD~s~~~f~~~~~l~d~l~~~-~----  240 (548)
                      ||||+.++.++..+||+||++..+...++++|+|+|+||++|||+++++++||+|++|++|+++++|+|+|.++ +    
T Consensus       166 iilr~~~~~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~  245 (861)
T 4f3t_A          166 VVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSI  245 (861)
T ss_dssp             HHHHHHHHHHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSC
T ss_pred             HHHHhhccccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccch
Confidence            99999888889999999999875445678999999999999999999999999999999999999999999631 0    


Q ss_pred             ------------------cccc-----------C--------------------------------------------CC
Q 035695          241 ------------------FFFF-----------S--------------------------------------------DL  247 (548)
Q Consensus       241 ------------------~l~~-----------r--------------------------------------------d~  247 (548)
                                        +.|+           |                                            ++
T Consensus       246 ~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p  325 (861)
T 4f3t_A          246 EEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYP  325 (861)
T ss_dssp             C---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCT
T ss_pred             hhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCC
Confidence                              0010           0                                            00


Q ss_pred             -----------------------------CCCCChHHH---------------------------------hhccccccC
Q 035695          248 -----------------------------SRPLSDQVR---------------------------------LKFGIQVAD  265 (548)
Q Consensus       248 -----------------------------~~~Ls~~~r---------------------------------~~~Gl~i~~  265 (548)
                                                   .++|+++++                                 +.|||+|++
T Consensus       326 ~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i~~  405 (861)
T 4f3t_A          326 HLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKD  405 (861)
T ss_dssp             TSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEECS
T ss_pred             CCceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHHHCCCEEeC
Confidence                                         125666543                                 689999999


Q ss_pred             CceEeceEecCCCeEeeccCCcceeecCCCCccccccceeecCcccceEEEEEeCCC---CchhHHHHHHHHHHHHHhcC
Q 035695          266 GLTSVDARILPAPMLKYHKSGREASVNPDFGQWNMINKKMFNGGRVEVWTCMNFSTC---LNQDVIGFCQRLVDMCNRKG  342 (548)
Q Consensus       266 ~~~~v~arvL~~P~i~~~~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~---~~~~~~~f~~~l~~~~~~~G  342 (548)
                      +|++|+||+||||+|.|+++++ ..+.|.+|+|++++++|++++++++|++++++..   ..+.+++|++.|.+.|+.+|
T Consensus       406 ~~~~v~gRvL~~P~I~y~~~~~-~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G  484 (861)
T 4f3t_A          406 EMTDVTGRVLQPPSILYGGRNK-AIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAG  484 (861)
T ss_dssp             SCEEEEEEECCCCCEECCSSSC-CEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred             CeeEEEEEEecCceEEecCCcc-cccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999987532 2356789999999999999999999999998632   23345999999999999999


Q ss_pred             CcccCCCccccccCChhhHHHHHHHHHHhccCCCCCceEEEEEeCCCCCc-hhhhhhhcccccceeeeeecccccCCCcH
Q 035695          343 MVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDVRGS-YGRIKRVCETELGIVSQCCQPKHASSRNM  421 (548)
Q Consensus       343 ~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~vilp~~~~~-Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~  421 (548)
                      |++..+|.+.....+.+.++..++.+.+..    .+++|||||+|++ .+ |+.||++||+++||+||||+.+++.|.++
T Consensus       485 ~~i~~~p~~~~~~~~~~~~~~~~~~l~~~~----~~~qlvl~Ilp~~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~  559 (861)
T 4f3t_A          485 MPIQGQPCFCKYAQGADSVEPMFRHLKNTY----AGLQLVVVILPGK-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTP  559 (861)
T ss_dssp             CCBCSCCSEEEECCSSSSHHHHHHHHHHHS----TTCCEEEEEESSS-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCH
T ss_pred             cccCCCCeEEEecCchHHHHHHHHHHHhhc----CCCcEEEEEeCCC-ccHHHHHHHHhcccCCcceEEEEecccccccH
Confidence            999865654222222456777777776643    5789999999965 56 99999999999999999999999988899


Q ss_pred             HHHHHHHHHhhhccCCeeeeeccccccCCCCcCCCCeEEEeeeccCCCCCCCCCCeEEEEEEecCCCccccceeeeeccc
Q 035695          422 QYFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKYRGLVSAQA  501 (548)
Q Consensus       422 ~~~~ni~lKiN~KLGG~n~~l~~~~~~~~p~l~~~~tMiiG~DV~H~~~~~~~~pSiaa~VaS~d~~~~~~y~~~~~~Q~  501 (548)
                      ||+.||+||||+||||+||.+.+.   ..|.+...+|||||+||+||++++...|||||||||+| .++++|++.+++|.
T Consensus       560 q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~  635 (861)
T 4f3t_A          560 QTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQ  635 (861)
T ss_dssp             HHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEES
T ss_pred             HHHHHHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcC-CCcceEEEEEEEcC
Confidence            999999999999999999998764   24555568999999999999988656899999999999 79999999999999


Q ss_pred             ccchhhhccccccCCCCCCcchhhHHHHHHHHHHHHcCCCCCceEeC
Q 035695          502 HNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY  548 (548)
Q Consensus       502 ~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~y~~~ng~lP~~IIiY  548 (548)
                      +++|+|++|             ++|+.++|+.|++.||.+|+|||||
T Consensus       636 ~~~E~i~~l-------------~~~~~~~L~~~~~~~~~~P~~Iiiy  669 (861)
T 4f3t_A          636 HRQEIIQDL-------------AAMVRELLIQFYKSTRFKPTRIIFY  669 (861)
T ss_dssp             TTCCSCTTH-------------HHHHHHHHHHHHHHHSCCCSEEEEE
T ss_pred             CCccHHHHH-------------HHHHHHHHHHHHHHhCCCCceEEEE
Confidence            999999999             9999999999999999999999998
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 548
d1yvua2 392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 5e-47
d1w9ha1 316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 1e-26
d1u04a2 447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 8e-22
d1u04a1322 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py 5e-05
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  166 bits (423), Expect = 5e-47
 Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 39/228 (17%)

Query: 330 FCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILPDV 389
           F + L++    KG+    +    I +    + ++ L+ V NK     K + L+I+ L + 
Sbjct: 58  FLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINKI----KDVDLVIVFLEEY 113

Query: 390 RGS--------YGRIKRVCETELGIVSQCCQPKHASSRN-MQYFENVALKINVKVGGRNT 440
                      Y  +KR    +  I SQ    +   + N      NVA ++  K G    
Sbjct: 114 PKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPY 172

Query: 441 VLDDAVQKRIPLVTDRPTIIFGADVTHPQPGEDSSPSIVAVVASMDWPEVTKYRGLVSAQ 500
            L +        +  +     G D++       +  ++          E+ +Y  L S  
Sbjct: 173 KLKE--------IEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYY-LTSYP 223

Query: 501 AHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKISTNRKPESIIFY 548
           A  E++ +                  I ++    +    +K   I+ +
Sbjct: 224 AFGEKLTEK----------------AIGDVFSLLEKLGFKKGSKIVVH 255
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query548
d1yvua2 392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 99.97
d1w9ha1 316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 99.95
d1u04a2 447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 99.91
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 99.86
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.97  E-value=1.7e-30  Score=267.64  Aligned_cols=208  Identities=20%  Similarity=0.202  Sum_probs=152.9

Q ss_pred             ccceEEEEEeC--CCCchhHHHHHHHHHHHHHhcCCcccCCCccccccCChhhHHHHHHHHHHhccCCCCCceEEEEEeC
Q 035695          310 RVEVWTCMNFS--TCLNQDVIGFCQRLVDMCNRKGMVFNRRPVIPISSYNPYQIEKALVDVHNKTTQPGKQLQLLIIILP  387 (548)
Q Consensus       310 ~l~~W~vv~~~--~~~~~~~~~f~~~l~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~li~vilp  387 (548)
                      .+..|.+|.+.  ++.+...++|++.|.++|+.+||++..++............+..+.+..++.    .++++++||+|
T Consensus        36 ~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~vi~~  111 (392)
T d1yvua2          36 DVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINKI----KDVDLVIVFLE  111 (392)
T ss_dssp             SEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTTHHHHHHHHHHTTT----SSCSEEEEEEC
T ss_pred             ccccceEEEEEEeehhhhHHHHHHHHHHHHHHhcCceecCCCcCeeecCCccchHHHHHHHHhhc----cCCCEEEEEEc
Confidence            34566666532  3445556999999999999999999754444333333455566666666544    67899999998


Q ss_pred             CCCC-------c-hhhhhhhcccccceeeeeecccccCCCcHH-HHHHHHHHhhhccCCeeeeeccccccCCCCcCCCCe
Q 035695          388 DVRG-------S-YGRIKRVCETELGIVSQCCQPKHASSRNMQ-YFENVALKINVKVGGRNTVLDDAVQKRIPLVTDRPT  458 (548)
Q Consensus       388 ~~~~-------~-Y~~iK~~~d~~~gI~TQcv~~~~~~k~~~~-~~~ni~lKiN~KLGG~n~~l~~~~~~~~p~l~~~~t  458 (548)
                      ++..       + |+.||++| .+.||+||||+.+++.+.+.+ ++.||++|||+||||+||.+..     .|.   .+|
T Consensus       112 ~~~~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~-----~~~---~~t  182 (392)
T d1yvua2         112 EYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKE-----IEG---KVD  182 (392)
T ss_dssp             ----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESC-----CTT---CCS
T ss_pred             CCCCcccccchhHHHHHHHHH-hcCCcccEEEChhhccCCCchHHHHHHHHHHHHHhCCcceECCC-----CCC---CCe
Confidence            8654       5 99999987 689999999999999866655 6789999999999999999964     232   689


Q ss_pred             EEEeeeccCCCCCCCCCCeEEEEEEecCCCc-cccceeeeecccccchhhhccccccCCCCCCcchhhHHHHHHHHHHHH
Q 035695          459 IIFGADVTHPQPGEDSSPSIVAVVASMDWPE-VTKYRGLVSAQAHNEEIIQDLYKSIQDPQRGLVHGGMIRELLIAFKIS  537 (548)
Q Consensus       459 MiiG~DV~H~~~~~~~~pSiaa~VaS~d~~~-~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~~~~~~~~~L~~y~~~  537 (548)
                      ||||+||+|++++.. .++++|++++.| .+ ...++.....|..++|++                .+++.++|..|+++
T Consensus       183 miIGiDv~h~~~~~~-~~~~v~~~~~~~-~~g~~~~~~~~~~~~~~ee~~----------------~~~~~~~l~~~~~~  244 (392)
T d1yvua2         183 AFVGIDISRITRDGK-TVNAVAFTKIFN-SKGELVRYYLTSYPAFGEKLT----------------EKAIGDVFSLLEKL  244 (392)
T ss_dssp             EEEEECEEECCCSSS-CCCEEEEEEEEC-TTSCEEEEEEEEECSCTTHHH----------------HHHHHHHHHHHHHT
T ss_pred             EEEEEEEEecCCCCC-cccEEEEEEEEc-CCCCEEEEEEEecCCccHHHH----------------HHHHHHHHHHHHHh
Confidence            999999999987654 456666666555 33 344455556666666643                66788999999999


Q ss_pred             cCCCCCceEeC
Q 035695          538 TNRKPESIIFY  548 (548)
Q Consensus       538 ng~lP~~IIiY  548 (548)
                      ||.+|++||||
T Consensus       245 ~~~~P~rIIi~  255 (392)
T d1yvua2         245 GFKKGSKIVVH  255 (392)
T ss_dssp             TCCTTCEEEEE
T ss_pred             cCCCCceEEEE
Confidence            99999999997
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure