Citrus Sinensis ID: 035696

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
MEDPSVQVQAPRVLNVLEALKQASVDLQAHPSSNSAEFNSSAIKALLELETESDALLSEDPHLSTLSQHLADLKTLVQTLHKSRGRNSLRSFLARRVSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSELGGDLIEMERFEEKEKNDRGVGAGGVVESKRESRERKFLKRHPFASCVARFAVQLEVGEGLRQREKRALKQEILLRVREASASDAEAATIVAEVLWGSSP
ccccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccc
ccccccHHccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccEcEEEccccccHHHHHccccccHHHHHHHEEEEEccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccc
medpsvqvqapRVLNVLEALKQASVdlqahpssnsaefNSSAIKALLELETEsdallsedphlsTLSQHLADLKTLVQTLHKSRGRNSLRSFLARRVSTHSISRVAGSIETEIQAWIDREHIERLTKALKdldgdggnvDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETIlcnpscskslreQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKsplvdeiesngeipkiISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSELGGDLIEMERFEekekndrgvgaggvveSKREsrerkflkrhpfaSCVARFAVQLEVGEGLRQREKRALKQEILLRVREASASDAEAATIVAEVLWGSSP
medpsvqvqAPRVLNVLEALKQASVDLqahpssnsaEFNSSAIKALLELETESDALLSEDPHLSTLSQHLADLKTLVQTLHksrgrnslrsflarrvsthsisrvagsietEIQAWIDREHIERLTKALkdldgdggNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKsplvdeiesngeiPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSELGGDLIEMErfeekekndrgvgaggvveskresrerkflkrhpfascvaRFAVQLEVGEGLRQREKRALKQEILLRvreasasdaeaATIVAevlwgssp
MEDPSVQVQAPRVLNVLEALKQASVDLQAHPSSNSAEFNSSAIKALLELETESDALLSEDPHLSTLSQHLADLKTLVQTLHKSRGRNSLRSFLARRVSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISlldmkdlqmkllamdCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSELGGDLIEMERFEEKEKNDRGVGAGGVVESKRESRERKFLKRHPFASCVARFAVQLEVGEGLRQREKRALKQEILLRVREASASDAEAATIVAEVLWGSSP
*********************************************************************LADLKTLVQTL********LRSFLARRVSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSELG***********************************FLKRHPFASCVARFAVQLEVGEGLRQ****ALKQEILLRVR********AATIVAEVLW****
***************VLEALKQAS****************SAIKALLELETESDALLSEDPHLSTLSQHLADLKTLVQTLHKSRGRNSLRSFLARRVSTHSISRVAGSIETEIQAWIDREHIERLTKA**************VKLLTQFEDRVS*GFSRELQDLVLKSKVFSLLETILCN******LREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSELGGDLIEMERFEE*************************LKRHPFASCVARFAVQLEV***************ILLRVREASASDAEAATIVAEVLWGS**
********QAPRVLNVLEALKQASVDLQ**********NSSAIKALLELETESDALLSEDPHLSTLSQHLADLKTLVQTLHKSRGRNSLRSFLARRVSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSELGGDLIEMERFEE************************FLKRHPFASCVARFAVQLEVGEGLRQREKRALKQEILLRVREASASDAEAATIVAEVLWGSSP
*******VQAPRVLNVLEALKQASVDL*A*******EFNSSAIKALLELETESDALLSEDPHLSTLSQHLADLKTLVQTLHKSRGRNSLRSFLARRVSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSELGGDLIEMERFEEKEKNDRGVGAGGVVESKRESRERKFLKRHPFASCVARFAVQLEVGEGLRQREKRALKQEILLRVREASASDAEAATIVAEVLWGSS*
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MEDPSVQVQAPRVLNVLEALKQASVDLQAHPSSNSAEFNSSAIKALLELETESDALLSEDPHLSTLSQHLADLKTLVQTLHKSRGRNSLRSFLARRVSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSELGGDLIEMERFEEKEKNDRGVGAGGVVESKRESRERKFLKRHPFASCVARFAVQLEVGEGLRQREKRALKQEILLRVREASASDAEAATIVAEVLWGSSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query405
359484746400 PREDICTED: uncharacterized protein LOC10 0.960 0.972 0.707 1e-151
255579855389 conserved hypothetical protein [Ricinus 0.958 0.997 0.672 1e-147
224120504389 predicted protein [Populus trichocarpa] 0.955 0.994 0.679 1e-146
224144108 557 predicted protein [Populus trichocarpa] 0.948 0.689 0.677 1e-146
296084524412 unnamed protein product [Vitis vinifera] 0.906 0.890 0.686 1e-145
147771669495 hypothetical protein VITISV_030235 [Viti 0.950 0.777 0.690 1e-143
351723667367 uncharacterized protein LOC732564 [Glyci 0.888 0.980 0.596 1e-112
357478301360 hypothetical protein MTR_4g115690 [Medic 0.854 0.961 0.513 1e-103
388497412360 unknown [Medicago truncatula] 0.841 0.947 0.520 1e-102
255548854398 conserved hypothetical protein [Ricinus 0.933 0.949 0.476 2e-90
>gi|359484746|ref|XP_003633154.1| PREDICTED: uncharacterized protein LOC100257560 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 281/397 (70%), Positives = 329/397 (82%), Gaps = 8/397 (2%)

Query: 11  PRVLNVLEALKQASVDLQAHPSSNSAEFNSSAIKALLELETESDALLSEDPHLSTLSQHL 70
           P+VL VLEAL+QAS  LQ +P+ NS   NSSAIKALLELETES++LLS DPHLS LS+HL
Sbjct: 10  PQVLTVLEALRQASHHLQTNPTLNSDNSNSSAIKALLELETESNSLLSSDPHLSALSRHL 69

Query: 71  ADLKTLVQTLHKSRGRNSLRSFLARRVSTHSISRVAGSIETEIQAWIDREHIERLTKALK 130
           + LK LV TL KSRG +SL SFL RR ST SISRVAGSIE+EI+AWIDRE +E LT+AL+
Sbjct: 70  SSLKDLVHTLQKSRG-HSLTSFLTRRASTQSISRVAGSIESEIRAWIDRERVEDLTRALR 128

Query: 131 DLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQ 190
           +L  D    DELVKLLTQFE+RVSQGFS ELQDL+LKSKVFSLLE++LCNP+CSK +RE 
Sbjct: 129 ELADD----DELVKLLTQFENRVSQGFSHELQDLILKSKVFSLLESVLCNPNCSKKIREH 184

Query: 191 SAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNG 250
           S +++++LIRFNKDVFVGQVLMG TV AL+ M S  S  VL  LIKSIKSPLVDEIESNG
Sbjct: 185 SGFAVSALIRFNKDVFVGQVLMGRTVLALIAMGSRSSLTVLWSLIKSIKSPLVDEIESNG 244

Query: 251 EIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSELGGDL 310
           EIPKIIS    +DL +++ A+DC  EIGY+GRKEAI+AML++G+++KL+ELQRSE+GG L
Sbjct: 245 EIPKIISFFSSQDLDIRIAAVDCAFEIGYYGRKEAIEAMLKEGVIEKLLELQRSEMGGIL 304

Query: 311 IEMERFEEKE--KNDRGVGAGGVVESKRESRERKFLKRHPFASCVARFAVQLEVGEGLRQ 368
           IEM  F E+E  K+  GV   G+  S R+SRE++FL+ HPFASCVARFAVQLEVGEGLRQ
Sbjct: 305 IEMGWFNEEENMKSFDGVDIEGIRRS-RDSREKRFLETHPFASCVARFAVQLEVGEGLRQ 363

Query: 369 REKRALKQEILLRVREASASDAEAATIVAEVLWGSSP 405
           REKRA KQEIL  VREA ASDAEAATIVAEVLWGSSP
Sbjct: 364 REKRAFKQEILGLVREACASDAEAATIVAEVLWGSSP 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255579855|ref|XP_002530764.1| conserved hypothetical protein [Ricinus communis] gi|223529680|gb|EEF31624.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224120504|ref|XP_002331064.1| predicted protein [Populus trichocarpa] gi|222872994|gb|EEF10125.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224144108|ref|XP_002325189.1| predicted protein [Populus trichocarpa] gi|222866623|gb|EEF03754.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296084524|emb|CBI25545.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147771669|emb|CAN71550.1| hypothetical protein VITISV_030235 [Vitis vinifera] Back     alignment and taxonomy information
>gi|351723667|ref|NP_001237031.1| uncharacterized protein LOC732564 [Glycine max] gi|73759941|dbj|BAE20188.1| hypothetical protein [Glycine max] Back     alignment and taxonomy information
>gi|357478301|ref|XP_003609436.1| hypothetical protein MTR_4g115690 [Medicago truncatula] gi|355510491|gb|AES91633.1| hypothetical protein MTR_4g115690 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388497412|gb|AFK36772.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255548854|ref|XP_002515483.1| conserved hypothetical protein [Ricinus communis] gi|223545427|gb|EEF46932.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00006413001
SubName- Full=Chromosome chr11 scaffold_170, whole genome shotgun sequence; (400 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 405
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.06
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.8
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.74
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 97.15
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.4
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 96.32
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 96.23
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 95.93
COG5064 526 SRP1 Karyopherin (importin) alpha [Intracellular t 95.55
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 95.34
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 93.4
PF05804 708 KAP: Kinesin-associated protein (KAP) 93.03
PF05804708 KAP: Kinesin-associated protein (KAP) 88.83
PRK09687280 putative lyase; Provisional 86.53
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 85.89
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 84.01
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 83.84
KOG4224550 consensus Armadillo repeat protein VAC8 required f 82.96
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 81.8
PF05004309 IFRD: Interferon-related developmental regulator ( 81.63
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 81.45
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 81.35
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information 
Probab=98.06  E-value=6.5e-05  Score=88.49  Aligned_cols=196  Identities=16%  Similarity=0.159  Sum_probs=148.3

Q ss_pred             hhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHH
Q 035696           99 THSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETIL  178 (405)
Q Consensus        99 ~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L  178 (405)
                      ...++-++..=..-+|+-+++..|..||..|+.     +++..+..++..+-+ ++. .+.+-+..|..++.++.|-.+|
T Consensus       425 v~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s-----~s~~iQ~~A~~~L~n-La~-~ndenr~aIieaGaIP~LV~LL  497 (2102)
T PLN03200        425 IRALSSLCCGKGGLWEALGGREGVQLLISLLGL-----SSEQQQEYAVALLAI-LTD-EVDESKWAITAAGGIPPLVQLL  497 (2102)
T ss_pred             HHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC-----CCHHHHHHHHHHHHH-HHc-CCHHHHHHHHHCCCHHHHHHHH
Confidence            334444554445668999999999999999996     456666666666665 544 5666778899999999999999


Q ss_pred             hCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHh--------------
Q 035696          179 CNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKS--------------  237 (405)
Q Consensus       179 ~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~--------------  237 (405)
                      ..+  +..+++++|++|..|... .+-+-..|.+..+|+.|+.+...       .+..+|++++..              
T Consensus       498 ~s~--~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl  574 (2102)
T PLN03200        498 ETG--SQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLL  574 (2102)
T ss_pred             cCC--CHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence            644  568999999999999863 22222334477888888888765       567777777531              


Q ss_pred             -------------hcChh----HHH-----HHhcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHH
Q 035696          238 -------------IKSPL----VDE-----IESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLV  295 (405)
Q Consensus       238 -------------i~spL----vDe-----i~~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glV  295 (405)
                                   ++..+    -++     ...+|=||.|+.+|++.+.+++.-|..++..+.- ||++.++++...|.|
T Consensus       575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a-~~~d~~~avv~agaI  653 (2102)
T PLN03200        575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS-SRQDLCESLATDEII  653 (2102)
T ss_pred             CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHcCCH
Confidence                         11111    011     1247899999999999999999999999999887 999999999999999


Q ss_pred             HHHHHHhhhc
Q 035696          296 KKLVELQRSE  305 (405)
Q Consensus       296 eKLv~LqRse  305 (405)
                      .-||.|=++.
T Consensus       654 pPLV~LLss~  663 (2102)
T PLN03200        654 NPCIKLLTNN  663 (2102)
T ss_pred             HHHHHHHhcC
Confidence            9999998653

>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query405
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 9e-06
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
3oqs_A 510 Importin subunit alpha-2; importin alpha, karyophe 4e-04
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 6e-04
2jdq_A 450 Importin alpha-1 subunit; transport, PB2 subunit, 5e-04
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 8e-04
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 7e-04
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
 Score = 46.6 bits (110), Expect = 9e-06
 Identities = 61/355 (17%), Positives = 135/355 (38%), Gaps = 55/355 (15%)

Query: 2   EDPSVQVQAPRVLNVL----EALKQASVDLQAHP------SSNSAEFNSSAIKALLELET 51
           +   +Q++A   L  +     A  +  VD  A P       + S E    AI AL  +  
Sbjct: 143 QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG 202

Query: 52  ES----DALLSED--PHLSTL--SQHLADLKTLVQTLHK-SRGRNSLRSFLARRVSTHSI 102
           +S    D +L  +    +  L  S   + ++T   TL    RG+     +     +  ++
Sbjct: 203 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 262

Query: 103 SRVAGSIETEIQ---AWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSR 159
           +++  S++TE      W    ++    +       D      LV+LL+     V     R
Sbjct: 263 AKLIYSMDTETLVDACWAIS-YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR 321

Query: 160 ----------ELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQ 209
                         +V+ + V   L  +L +P   +++++++ ++I+++   N +  +  
Sbjct: 322 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK--ENIKKEACWTISNITAGNTE-QIQA 378

Query: 210 VLMGPTVQALLTMSSTHSSKVLCELIKSI---------KSPLVDEIESNGEIPKIISLLD 260
           V+    +  L+ +      K   E   +I         +  ++  + S G I  +  LL+
Sbjct: 379 VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE 438

Query: 261 MKDLQMKLLAMDCILEIGYFGRKEA----------IDAMLEQGLVKKLVELQRSE 305
           + D ++  + +D +  I   G  +            D + + G ++K+   Q++E
Sbjct: 439 IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNE 493
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query405
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.08
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.02
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.86
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.83
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.82
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.74
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.64
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.63
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.6
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.6
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.51
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.51
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.5
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.48
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.46
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.35
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 98.27
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.24
3nmz_A458 APC variant protein; protein-protein complex, arma 98.14
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.13
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.12
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.11
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.02
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 97.99
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.88
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 97.87
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 97.82
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.79
3nmz_A458 APC variant protein; protein-protein complex, arma 97.79
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 97.6
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.53
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 97.3
3grl_A 651 General vesicular transport factor P115; vesicle t 97.15
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 96.9
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 96.86
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 96.23
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 95.62
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 95.52
1qgr_A876 Protein (importin beta subunit); transport recepto 95.42
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 95.34
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 94.99
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 94.9
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 94.42
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 94.29
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 94.21
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 94.15
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 93.94
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 93.85
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 93.59
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 93.5
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 92.7
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 92.55
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 92.52
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 92.33
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 91.64
1qgr_A 876 Protein (importin beta subunit); transport recepto 91.43
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 91.28
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 88.3
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 88.15
3grl_A 651 General vesicular transport factor P115; vesicle t 85.98
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 85.03
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 82.48
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
Probab=99.08  E-value=5.8e-09  Score=86.86  Aligned_cols=197  Identities=17%  Similarity=0.280  Sum_probs=152.9

Q ss_pred             hhhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHH
Q 035696           96 RVSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLE  175 (405)
Q Consensus        96 ~~~~~~isrva~~ie~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le  175 (405)
                      ......+..++..-..-.+..++...|..|+..|++     .+.+-+..++.-+-+ + ...+++.++.+.+.+.++.|-
T Consensus        20 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~v~~~a~~~L~~-l-~~~~~~~~~~~~~~~~i~~l~   92 (252)
T 4hxt_A           20 KEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-----TDSEVQKEAARALAN-I-ASGPDEAIKAIVDAGGVEVLV   92 (252)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHH-H-TTSCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-----CCHHHHHHHHHHHHH-H-HcCChHHHHHHHHCCCHHHHH
Confidence            334455555555555556667777889999999997     345455555555555 4 234699999999999999999


Q ss_pred             HHHhCCCCCcchhhhhHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChh-HHHHH
Q 035696          176 TILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPL-VDEIE  247 (405)
Q Consensus       176 ~~L~~~~~s~~VRe~sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spL-vDei~  247 (405)
                      .+|.++  +..+|..++.++..|.. +.+.....+.....++.|+.+...       .+..+|+.|..  ..|- .+.+.
T Consensus        93 ~ll~~~--~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~  167 (252)
T 4hxt_A           93 KLLTST--DSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPDEAIKAIV  167 (252)
T ss_dssp             HHTTCS--SHHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHHHH
T ss_pred             HHHcCC--CHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence            999754  57899999999999985 334455566677889999998876       45555665544  2444 57888


Q ss_pred             hcCchHHHHHhhccCcchhhHhhhhhhhhhhhcccHHHHHHHHHhHHHHHHHHHhhhc
Q 035696          248 SNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSE  305 (405)
Q Consensus       248 ~~GeIpkiislLdskdl~~r~~amdCileIgy~GrKe~IEaML~~glVeKLv~LqRse  305 (405)
                      ..|-||.++.+|.+.+..+|..++.|+..++. +..+..+.+.+.|+++.|+.+=+++
T Consensus       168 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~  224 (252)
T 4hxt_A          168 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTST  224 (252)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-SBHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred             HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHCCC
Confidence            99999999999999999999999999999997 7899999999999999999988543
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 405
d1q1sc_ 434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 0.001
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 11/62 (17%), Positives = 27/62 (43%)

Query: 244 DEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQR 303
           ++   N  +  I+  ++  +L+ +L A     ++    ++  ID ++  GL+ K V    
Sbjct: 7   NQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG 66

Query: 304 SE 305
             
Sbjct: 67  KT 68

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query405
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.5
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.41
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.39
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.14
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.04
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.04
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 97.61
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 97.18
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 96.53
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 96.48
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 93.36
d1b3ua_588 Constant regulatory domain of protein phosphatase 93.24
d1b3ua_ 588 Constant regulatory domain of protein phosphatase 91.8
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 90.38
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 90.07
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 88.63
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=1.6e-06  Score=75.01  Aligned_cols=185  Identities=18%  Similarity=0.253  Sum_probs=135.5

Q ss_pred             HHHHHHHhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhccCChHHHHHHHhhchHHHHHHHHhCCCCCcchhhh
Q 035696          111 TEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQ  190 (405)
Q Consensus       111 ~eiqawiDre~i~~Lv~~L~d~~~~~~~e~e~v~~L~efe~rvsqgfD~~lQdliL~sklf~~Le~~L~~~~~s~~VRe~  190 (405)
                      .-++..++...+..|+..++.     .+.+-+..++.-+.+ +.. .+++....++..++++.|-.+|.++  ...||+.
T Consensus       221 ~~~~~~~~~~~~~~Lv~ll~~-----~~~~~~~~al~~l~~-l~~-~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~  291 (434)
T d1q1sc_         221 ERIEMVVKKGVVPQLVKLLGA-----TELPIVTPALRAIGN-IVT-GTDEQTQKVIDAGALAVFPSLLTNP--KTNIQKE  291 (434)
T ss_dssp             HHHHHHHTTTCHHHHHHHHTC-----SCHHHHHHHHHHHHH-HTT-SCHHHHHHHHHTTGGGGHHHHTTCS--SHHHHHH
T ss_pred             hhHHHHhhcccchhccccccc-----chhhhhhchhhhhhh-HHh-hhhHHHHHHHhccccchHHHhhccc--chhhhHH
Confidence            344555666678888888875     455555556666665 543 5777888888999999999988544  5579999


Q ss_pred             hHHHHHHHHhhcCCceeeeecccccHHHHHHhccc-------chHHHHHHHHHhhcChhHHHHHhcCchHHHHHhhccCc
Q 035696          191 SAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSST-------HSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKD  263 (405)
Q Consensus       191 sAf~v~aLvrfnkdvfVg~vLmg~~V~aLI~m~s~-------~s~~vL~~Li~~i~spLvDei~~~GeIpkiislLdskd  263 (405)
                      +++++..|.. +..-+...+....+++.|+.+...       .+..+|+.+......--+..+.+.|-||.++++|+++|
T Consensus       292 a~~~L~~l~~-~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d  370 (434)
T d1q1sc_         292 ATWTMSNITA-GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  370 (434)
T ss_dssp             HHHHHHHHTT-SCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSC
T ss_pred             HHHHHhhhcc-ccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCC
Confidence            9999999985 444555666777899999999887       55666666665432223777889999999999999999


Q ss_pred             chhhHhhhhhhhhhhhc----ccHHH-HHHHHHhHHHHHHHHHhhhc
Q 035696          264 LQMKLLAMDCILEIGYF----GRKEA-IDAMLEQGLVKKLVELQRSE  305 (405)
Q Consensus       264 l~~r~~amdCileIgy~----GrKe~-IEaML~~glVeKLv~LqRse  305 (405)
                      .+++..++.++..|--+    +..+. -..|-+.|.+++|-+||-++
T Consensus       371 ~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~  417 (434)
T d1q1sc_         371 TKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE  417 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCC
Confidence            99999999988766543    33443 34455678889988888443
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure