Citrus Sinensis ID: 035711

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGTGSEATTFTYPSSPAAAAAAAATKFKPDNSANV
Secondary Structure (PSIPRED)
ccEEEEEHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccccccccccccHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEHHHHHHHHHHHHHHHHHcccccccccccccEEccccccccccccccccccccccHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MGMVVVISLPLILFSLLLGFGCyylgrargrqdirtnpqvfgvpapppgtgseattftypsspAAAAAAAAtkfkpdnsanv
Flexible Loop (DISEMBL)
MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGTGSEATTFTYPSSPAAAAAAAatkfkpdnsanv
Low Complexity Region (SEG)
MGMVvvislplilfslllgfgCYYLGRARGRQDIRTNPQVFGVPAPPPGTGSEATTFTYPSSPaaaaaaaaTKFKPDNSANV
Disordered region (IsUnstruct)
**MVVVISLPLILFSLLLGFGCYYLGRARG****************************************************
Disordered Region (DISOPRED)
*GMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPG*********************************
Disordered Region (DISEMBL)
MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGTGSEATTFTYPSS********************
Disordered Region (DISPRO)
*GMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGTGSEATTFT************************
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGTGSEATTFTYPSSPAAAAAAAATKFKPDNSANV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
449451725	71	PREDICTED: uncharacterized protein LOC10	0.865	1.0	0.597	1e-19
356501737	75	PREDICTED: uncharacterized protein LOC10	0.914	1.0	0.560	7e-19
118484464	68	unknown [Populus trichocarpa]	0.609	0.735	0.86	1e-17
224072361	68	predicted protein [Populus trichocarpa]	0.609	0.735	0.84	6e-17
356554489	65	PREDICTED: uncharacterized protein LOC10	0.792	1.0	0.536	2e-16
118485739	68	unknown [Populus trichocarpa]	0.829	1.0	0.573	3e-16
357495499	75	hypothetical protein MTR_5g098300 [Medic	0.634	0.693	0.711	2e-15
225465127	70	PREDICTED: uncharacterized protein LOC10	0.634	0.742	0.711	2e-14
18397903	70	uncharacterized protein [Arabidopsis tha	0.853	1.0	0.536	8e-13
224057978	177	predicted protein [Populus trichocarpa]	0.475	0.220	0.846	5e-12

>gi|449451725|ref|XP_004143612.1| PREDICTED: uncharacterized protein LOC101203814 [Cucumis sativus] gi|449507694|ref|XP_004163104.1| PREDICTED: uncharacterized protein LOC101230138 [Cucumis sativus]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 60/82 (73%), Gaps = 11/82 (13%)

Query: 1  MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGTGSEATTFTYP 60
          MG+VVVISLPLI F LLLGFGCY+LGRA+GRQDIRTN Q+FGVP PPPG+G+        
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGA-------- 52

Query: 61 SSPAAAAAAAATKFKPDNSANV 82
             A + ++    FKP+N+ NV
Sbjct: 53 ---AHSPSSLQPVFKPENTTNV 71

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501737|ref|XP_003519680.1| PREDICTED: uncharacterized protein LOC100803585 [Glycine max]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 60/82 (73%), Gaps = 7/82 (8%)

Query: 1  MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGTGSEATTFTYP 60
          MGMVVVISLP I+F  LLGFGCY+ GRARGR++++TNPQV+G+P+PPPG  +  T F  P
Sbjct: 1  MGMVVVISLPFIIFCFLLGFGCYFFGRARGRKEVQTNPQVYGMPSPPPGAVASNTFFPSP 60

Query: 61 SSPAAAAAAAATKFKPDNSANV 82
           +P + +       KPDN+ NV
Sbjct: 61 PAPHSHS-------KPDNTDNV 75

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484464|gb|ABK94108.1| unknown [Populus trichocarpa]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/50 (86%), Positives = 46/50 (92%)

Query: 1  MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGT 50
          MGMVVVISLPLI+F LLLGFGCYYLGR +GRQD+RTN QVFGVP PPPGT
Sbjct: 1  MGMVVVISLPLIIFCLLLGFGCYYLGRYKGRQDVRTNAQVFGVPIPPPGT 50

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072361|ref|XP_002303699.1| predicted protein [Populus trichocarpa] gi|118484360|gb|ABK94057.1| unknown [Populus trichocarpa] gi|222841131|gb|EEE78678.1| predicted protein [Populus trichocarpa]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/50 (84%), Positives = 45/50 (90%)

Query: 1  MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGT 50
          MGMVVVISLPLI+F LLLGFGCYYLGR +GRQD+RTN QVFGVP PPP T
Sbjct: 1  MGMVVVISLPLIIFCLLLGFGCYYLGRYKGRQDVRTNAQVFGVPIPPPDT 50

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554489|ref|XP_003545578.1| PREDICTED: uncharacterized protein LOC100807423 [Glycine max]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 55/82 (67%), Gaps = 17/82 (20%)

Query: 1  MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGTGSEATTFTYP 60
          MGMVVVISLP I+F L+LGFGCY+ GRARGR++++TNPQV+G+PAPPP            
Sbjct: 1  MGMVVVISLPFIIFCLVLGFGCYFFGRARGRREVQTNPQVYGMPAPPP------------ 48

Query: 61 SSPAAAAAAAATKFKPDNSANV 82
                A A+    KPDN+ NV
Sbjct: 49 -----TACASHPHSKPDNTDNV 65

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485739|gb|ABK94719.1| unknown [Populus trichocarpa]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 51/82 (62%), Gaps = 14/82 (17%)

Query: 1  MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGTGSEATTFTYP 60
          MGMVVVISLPLI+F LLLGFGCYYLGR +GRQD RTN QVFG P PPPG           
Sbjct: 1  MGMVVVISLPLIIFCLLLGFGCYYLGRYKGRQDTRTNAQVFGDPIPPPG----------- 49

Query: 61 SSPAAAAAAAATKFKPDNSANV 82
              A+        KPDN  +V
Sbjct: 50 ---FASTPPPPPHTKPDNLHSV 68

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495499|ref|XP_003618038.1| hypothetical protein MTR_5g098300 [Medicago truncatula] gi|355519373|gb|AET00997.1| hypothetical protein MTR_5g098300 [Medicago truncatula]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 1  MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGTGS 52
          MGMVVVISLP I F L++GFGCY+ GRARGR+D+ TNPQV+G+P PPPGT +
Sbjct: 1  MGMVVVISLPFIFFCLVIGFGCYFFGRARGRRDVYTNPQVYGMPIPPPGTAA 52

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465127|ref|XP_002273492.1| PREDICTED: uncharacterized protein LOC100264972 [Vitis vinifera]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 1  MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGTGS 52
          MGM VVISLPLILFS++LGFGCY+LG+A+GR++   N QVFGVP PPPG+G 
Sbjct: 1  MGMEVVISLPLILFSIILGFGCYFLGKAKGRKEAFANVQVFGVPTPPPGSGE 52

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397903|ref|NP_564378.1| uncharacterized protein [Arabidopsis thaliana] gi|21536718|gb|AAM61050.1| unknown [Arabidopsis thaliana] gi|94807644|gb|ABF47119.1| At1g31335 [Arabidopsis thaliana] gi|332193222|gb|AEE31343.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 53/82 (64%), Gaps = 12/82 (14%)

Query: 1  MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQVFGVPAPPPGTGSEATTFTYP 60
          MG+VVVISLPLI F LLLGFGCY+LG++RGR++IRTNPQV+       G  +        
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVY-------GAPAPPPGAIAA 53

Query: 61 SSPAAAAAAAATKFKPDNSANV 82
          SSP  +  A     KPDNS NV
Sbjct: 54 SSPPLSPHA-----KPDNSHNV 70

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057978|ref|XP_002299419.1| predicted protein [Populus trichocarpa] gi|222846677|gb|EEE84224.1| predicted protein [Populus trichocarpa]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/39 (84%), Positives = 35/39 (89%)

Query: 1  MGMVVVISLPLILFSLLLGFGCYYLGRARGRQDIRTNPQ 39
          MGMVVVISLPLI+F LLLGFGCYYLGR +GRQD RTN Q
Sbjct: 1  MGMVVVISLPLIIFCLLLGFGCYYLGRYKGRQDTRTNAQ 39

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
TAIR|locus:505006161	70	AT1G31335 "AT1G31335" [Arabido	0.597	0.7	0.508	4.1e-10

TAIR|locus:505006161 AT1G31335 "AT1G31335" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query:    22 CYYLGRARGRQDIRTNPQVFGVPAPPPGTGSEATTFTYPSSPXXXXXXXXTKFKPDNSAN 81
             CY+LG++RGR++IRTNPQV+G PAPPPG  + ++    P SP           KPDNS N
Sbjct:    22 CYFLGKSRGRREIRTNPQVYGAPAPPPGAIAASSP---PLSPHA---------KPDNSHN 69

Query:    82 V 82
             V
Sbjct:    70 V 70


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        57   0.00091  102 3  11 22  0.39    28
                                                     29  0.44    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  392 (42 KB)
  Total size of DFA:  69 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.04u 0.09s 9.13t   Elapsed:  00:00:00
  Total cpu time:  9.04u 0.09s 9.13t   Elapsed:  00:00:00
  Start:  Fri May 10 04:55:31 2013   End:  Fri May 10 04:55:31 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_III1238 SubName- Full=Putative uncharacterized protein; (68 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
PF14610	189	DUF4448: Protein of unknown function (DUF4448)	94.51
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	90.64
PF15102	146	TMEM154: TMEM154 protein family	88.44
PF12501	170	DUF3708: Phosphate ATP-binding cassette transporte	88.2
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	85.65
PRK02898	100	cobalt transport protein CbiN; Provisional	85.39
PF15050	133	SCIMP: SCIMP protein	82.46

>PF14610 DUF4448: Protein of unknown function (DUF4448)

Probab=94.51  E-value=0.037  Score=38.86  Aligned_cols=31  Identities=23%  Similarity=0.448  Sum_probs=24.5

Q ss_pred             eEEEehhhHHHHHHHHHHHhhhhhcccccccc
Q 035711            3 MVVVISLPLILFSLLLGFGCYYLGRARGRQDI   34 (82)
Q Consensus         3 ~vlVISLP~I~f~llLgfGcYflGr~rGR~E~   34 (82)
                      ..+.|+||.++.+++++..++++. +|++|.+
T Consensus       158 ~~laI~lPvvv~~~~~~~~~~~~~-~R~~Rri  188 (189)
T PF14610_consen  158 YALAIALPVVVVVLALIMYGFFFW-NRKKRRI  188 (189)
T ss_pred             eeEEEEccHHHHHHHHHHHhhhee-eccceec
Confidence            489999999999999888888887 4444443

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=90.64  E-value=0.26  Score=32.92  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             ehhhHHHHHHHHHHHhhhhhccccccc
Q 035711            7 ISLPLILFSLLLGFGCYYLGRARGRQD   33 (82)
Q Consensus         7 ISLP~I~f~llLgfGcYflGr~rGR~E   33 (82)
                      +-+=+|++.||+-|+|+++.|.|-|+.
T Consensus         4 l~~iii~~i~l~~~~~~~~~rRR~r~G   30 (130)
T PF12273_consen    4 LFAIIIVAILLFLFLFYCHNRRRRRRG   30 (130)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            444566777777788888888888774

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF15102 TMEM154: TMEM154 protein family

Probab=88.44  E-value=0.68  Score=33.77  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=15.0

Q ss_pred             ceEEEehhhHHHHHHHHHHHh
Q 035711            2 GMVVVISLPLILFSLLLGFGC   22 (82)
Q Consensus         2 G~vlVISLP~I~f~llLgfGc   22 (82)
                      .|+++|-+|+|+|.|||-+..
T Consensus        56 efiLmIlIP~VLLvlLLl~vV   76 (146)
T PF15102_consen   56 EFILMILIPLVLLVLLLLSVV   76 (146)
T ss_pred             ceEEEEeHHHHHHHHHHHHHH
Confidence            478999999888866554443

>PF12501 DUF3708: Phosphate ATP-binding cassette transporter; InterPro: IPR022182 This domain family is found in bacteria, and is typically between 143 and 173 amino acids in length

Probab=88.20  E-value=0.17  Score=36.25  Aligned_cols=23  Identities=48%  Similarity=0.728  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHhhhhhcccccccc
Q 035711           12 ILFSLLLGFGCYYLGRARGRQDI   34 (82)
Q Consensus        12 I~f~llLgfGcYflGr~rGR~E~   34 (82)
                      +++.++|+...|++||.|-++-.
T Consensus         2 lllll~l~~~~~~~gr~Ra~~~~   24 (170)
T PF12501_consen    2 LLLLLLLGAVGYFLGRRRARALA   24 (170)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788899999999999876554

The family is found in association with PF00528 from PFAM. There is a single completely conserved residue P that may be functionally important.

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=85.65  E-value=0.56  Score=35.12  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=16.1

Q ss_pred             HHHHHHHHHhhhhhccccccc
Q 035711           13 LFSLLLGFGCYYLGRARGRQD   33 (82)
Q Consensus        13 ~f~llLgfGcYflGr~rGR~E   33 (82)
                      ..++||++..|++||+|-|+.
T Consensus       282 a~lvlivLiaYli~Rrr~~~g  302 (306)
T PF01299_consen  282 AGLVLIVLIAYLIGRRRSRAG  302 (306)
T ss_pred             HHHHHHHHHhheeEecccccc
Confidence            345566778899999998874

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

>PRK02898 cobalt transport protein CbiN; Provisional

Probab=85.39  E-value=0.46  Score=32.81  Aligned_cols=24  Identities=38%  Similarity=0.549  Sum_probs=17.7

Q ss_pred             HHHHHHH----HHhhhhhcccccccccc
Q 035711           13 LFSLLLG----FGCYYLGRARGRQDIRT   36 (82)
Q Consensus        13 ~f~llLg----fGcYflGr~rGR~E~~t   36 (82)
                      ||+|=-+    +-+|+||+.|||++.+.
T Consensus        70 LFaLQAAiGAgiIgY~lG~~~gr~~~~~   97 (100)
T PRK02898         70 LFALQAALGAGIIGYILGYYKGRSKRRN   97 (100)
T ss_pred             HHHHHHHHhhhhhheeeeehhhhhhhhh
Confidence            5555444    44899999999998654

>PF15050 SCIMP: SCIMP protein

Probab=82.46  E-value=0.6  Score=34.11  Aligned_cols=45  Identities=31%  Similarity=0.608  Sum_probs=30.4

Q ss_pred             EehhhHHHHHHHHHHHhhhhhc----------------cccccc--cccC----CccccCCCCCCCc
Q 035711            6 VISLPLILFSLLLGFGCYYLGR----------------ARGRQD--IRTN----PQVFGVPAPPPGT   50 (82)
Q Consensus         6 VISLP~I~f~llLgfGcYflGr----------------~rGR~E--~~t~----~QvyG~P~PPpg~   50 (82)
                      .+....|+.+++||+-.|-.-|                +++|.|  |+.|    .++==+|+||.|.
T Consensus        11 iLAVaII~vS~~lglIlyCvcR~~lRqGkkweiakp~k~~~rdeEkmYENv~n~~~~~LPpLPPRg~   77 (133)
T PF15050_consen   11 ILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAKPLKQKQRDEEKMYENVLNQSPVQLPPLPPRGS   77 (133)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccccceeccchhhhcccHHHHHHHhhcCCcCCCCCCCCCCC
Confidence            3455678888999998885543                344444  7776    4455678888776

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00