Citrus Sinensis ID: 035716

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MLTSAATALHSLCISSQTPSPTSSSSPSNSQQLNIHLSTKPKSLLQNHPLYPPTQANLSFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNELIKPKPGRG
Secondary Structure (PSIPRED)
ccccHHHHHHHccccccccccccccccccccHHccccccccHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHcccccccccccHHHHHHHHHHccccccHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHHHcccccccccccHHHHHHHHHHHccccccHHHHccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHccccccccccccccccHHHHHHccccHHHHHHcccccccccccccHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHcccHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccEHcccHHHHHHHHHHHHHHcccccHHHHHHHcHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHEEcHHHHcHHHHHHHHHHccccHHHHHHccHHHcccHHHHcHHHHHHHHHccccccHHHHHcccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MLTSAATALHSLcissqtpsptsssspsnsqqlnihlstkpksllqnhplypptqanlSFQIKEKILCLEImgvdsgkalslnpslhsaslNSIEGIISFLQSkgilqkdlprifgmcpkVLTANIKTDLEPVFNflshdlevpehdfRKVInkcprlltssaRDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENtlipklkylesigfskdEAVLMVLRcpglftfsiennfkpkfeyFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEfnelikpkpgrg
Flexible Loop (DISEMBL)
MLTSAATALHSLCISSQTPSPTSSSSPSNSQQLNIHLSTKPKSLLQNHPLYPPTQANLSFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRngarlslpvmlktsdeefnelikpkpgrg
Low Complexity Region (SEG)
MLTSAATALHSLCIssqtpsptsssspsnsqqLNIHLSTKPKSLLQNHPLYPPTQANLSFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNleikgkleelkeFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNELIKPKPGRG
Disordered region (IsUnstruct)
**************************************************Y*PTQANLSFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKP************************************
Disordered Region (DISOPRED)
*********************************************QNHPLYPPTQANLSFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNELIKPKPG**
Disordered Region (DISEMBL)
********LHSLCI******************LNIHLSTKPKSLLQNHPLYPPTQANLSFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNELIKPKPGRG
Disordered Region (DISPRO)
*LTSAATALHSLCISSQTPSPTSSSSPSNSQQLNIHLSTKPKSLLQNHPLYPPTQANLSFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNELIKP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTSAATALHSLCISSQTPSPTSSSSPSNSQQLNIHLSTKPKSLLQNHPLYPPTQANLSFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNELIKPKPGRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
Q8R3J4	412	mTERF domain-containing p	yes	no	0.532	0.398	0.254	8e-05
Q6P6Q6	409	mTERF domain-containing p	yes	no	0.532	0.400	0.254	0.0002
Q96E29	417	mTERF domain-containing p	yes	no	0.701	0.517	0.232	0.0004

>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus GN=Mterfd1 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 89/185 (48%), Gaps = 21/185 (11%)

Query: 11  SLCISSQTPSPTSSSSPSNSQ----------QLNIHLSTKPKSLLQNHPLYPPTQANLSF 60
           ++ I++ +P P SS + ++            QL + LS      ++ HP        L F
Sbjct: 125 AIQIAAYSPLPISSFTLADYVDHSKTLQKLVQLGVDLSK-----IEKHPDAANLLLRLDF 179

Query: 61  Q--IKEKILCLEIMGVDS---GKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIF 115
           +  IK+ +L L+ +G++    G  L+ N ++ S  L +++  +++LQSK   + D+ R+ 
Sbjct: 180 EKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLENLKTRVAYLQSKNFSKTDIARMV 239

Query: 116 GMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQ 175
              P +L+ +++  L+    F   +LE+     R ++ + PRLLT S     +    Y  
Sbjct: 240 KNAPFLLSFSVER-LDNRLGFFQKELELNVKKTRDLVVRLPRLLTGSLEPVKENMKVYHL 298

Query: 176 RLGFK 180
            LGFK
Sbjct: 299 ELGFK 303

Binds promoter DNA (By similarity). Regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.
Mus musculus (taxid: 10090)

>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Mterfd1 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 21/185 (11%)

Query: 11  SLCISSQTPSPTSSSSPSNSQ----------QLNIHLSTKPKSLLQNHPLYPPTQANLSF 60
           ++ I++ +P P SSS+ ++            QL + LS      ++ HP        L+F
Sbjct: 122 AIQIAAYSPLPLSSSTLADYVDHSETLQKLVQLGVDLSK-----IEKHPDVANLLLRLNF 176

Query: 61  Q--IKEKILCLEIMGVDS---GKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIF 115
           +  IK+ +L L+ +G++    G  L+ N ++ S  L +++  +++LQSK   + D+  + 
Sbjct: 177 EKDIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLENLKTRVAYLQSKNFSKTDIACMV 236

Query: 116 GMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQ 175
              P +L+ +++  L+    F   +LE+     R ++ + PRLLT S     +    Y  
Sbjct: 237 KNAPFLLSFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRL 295

Query: 176 RLGFK 180
            LGFK
Sbjct: 296 ELGFK 300

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Rattus norvegicus (taxid: 10116)

>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens GN=MTERFD1 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 110/237 (46%), Gaps = 21/237 (8%)

Query: 43  SLLQNHPLYPPTQANLSFQ--IKEKILCLEIMGVDS---GKALSLNPSLHSASLNSIEGI 97
           S ++ HP        L F+  IK+ +L L+ +G++    G  L+ N ++ S  L +++  
Sbjct: 167 SKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTR 226

Query: 98  ISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPR 157
           +++L SK   + D+ ++    P +L  +++  L+    F   +LE+     R ++ + PR
Sbjct: 227 VAYLHSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPR 285

Query: 158 LLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIP-KLKYLESIGFSKD 216
           LLT S     +    Y   LGFK  N + +     +++++   L   K+K  E+  F  +
Sbjct: 286 LLTGSLEPVKENMKVYRLELGFKH-NEIQH-----MITRIPKMLTANKMKLTETFDFVHN 339

Query: 217 EAVL---MVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRI 270
              +   ++++ P +F   +   FK K  +  L   G+ +     P Y   SL+K +
Sbjct: 340 VMSIPHHIIVKFPQVFNTRL---FKVKERHLFLTYLGRAQYDPAKPNY--ISLDKLV 391

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
255584499	301	conserved hypothetical protein [Ricinus	0.967	0.990	0.721	1e-123
449455114	304	PREDICTED: uncharacterized protein LOC10	0.983	0.996	0.690	1e-116
359483906	304	PREDICTED: uncharacterized protein LOC10	0.967	0.980	0.717	1e-115
356530561	302	PREDICTED: uncharacterized protein LOC10	0.964	0.983	0.679	1e-113
449506312	282	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.915	1.0	0.712	1e-112
147846790	269	hypothetical protein VITISV_032619 [Viti	0.847	0.970	0.758	1e-112
388509454	313	unknown [Medicago truncatula]	0.879	0.865	0.726	1e-112
255638122	302	unknown [Glycine max]	0.964	0.983	0.676	1e-112
357450633	313	MTERF-like protein [Medicago truncatula]	0.879	0.865	0.726	1e-112
356556529	302	PREDICTED: uncharacterized protein LOC10	0.951	0.970	0.672	1e-111

>gi|255584499|ref|XP_002532978.1| conserved hypothetical protein [Ricinus communis] gi|223527242|gb|EEF29402.1| conserved hypothetical protein [Ricinus communis]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/309 (72%), Positives = 257/309 (83%), Gaps = 11/309 (3%)

Query: 1   MLTSAATALHS--LCISSQTPSPTSSSSPSNSQQLNIHLSTKP-KSLLQNHPLYPPTQAN 57
           M  +AAT L S   C ++QTPS        NSQQ  ++LS KP KS+L  HPLY P Q+N
Sbjct: 1   MAVAAATGLPSTFCCFTAQTPS--------NSQQPYVNLSAKPTKSILHKHPLYTPLQSN 52

Query: 58  LSFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGM 117
           +SFQI+EKILCLEIMGVDSGKALS NPSLHSASL+SI  IISFLQSKGI ++DL RIFGM
Sbjct: 53  ISFQIQEKILCLEIMGVDSGKALSQNPSLHSASLDSIHSIISFLQSKGIRERDLGRIFGM 112

Query: 118 CPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRL 177
           CP++LT+NIKTDL PVF+FL HDL+VPE++FR+VINKCPRLL    RDQLKP LFYLQRL
Sbjct: 113 CPQILTSNIKTDLHPVFDFLYHDLKVPENNFRRVINKCPRLLICGVRDQLKPCLFYLQRL 172

Query: 178 GFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNF 237
           GF+DL ALAYQDS+LLVS VE TLIPKLKYLE+IGFSKDE + MVLRCP LFTFS+ENNF
Sbjct: 173 GFRDLGALAYQDSILLVSDVEKTLIPKLKYLEAIGFSKDEVIGMVLRCPTLFTFSVENNF 232

Query: 238 KPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEF 297
           KPKFEYF  E+KGKLEELKEFPQYFAFSLE RIKPRH++ +++GA L LPVMLK++DEEF
Sbjct: 233 KPKFEYFVEEMKGKLEELKEFPQYFAFSLENRIKPRHLELIQSGAELPLPVMLKSTDEEF 292

Query: 298 NELIKPKPG 306
            EL+K   G
Sbjct: 293 KELVKQGAG 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455114|ref|XP_004145298.1| PREDICTED: uncharacterized protein LOC101219732 [Cucumis sativus] gi|449475105|ref|XP_004154376.1| PREDICTED: uncharacterized protein LOC101217087 [Cucumis sativus]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/307 (69%), Positives = 245/307 (79%), Gaps = 4/307 (1%)

Query: 1   MLTSAATALHS-LCISSQTPSPTSSSSPSNSQQLNIHLSTKPKSLLQNHPLYPPTQANLS 59
           M +S+ATA HS  C SS       SSSPSNS Q N  LS KPK+LL  HPLY P  + +S
Sbjct: 1   MSSSSATAFHSSFCFSSHN---KLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVS 57

Query: 60  FQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCP 119
            Q KEKILCLEIMGVDSGKALS NPSLHS +L SI  +ISFLQSKGI QKD  +IFGMCP
Sbjct: 58  SQTKEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCP 117

Query: 120 KVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGF 179
           K+LT+++KTDL PVFNFLS DL++P+ +FRK INKCPRLL SSA DQLKPALFYLQRLG 
Sbjct: 118 KILTSDVKTDLVPVFNFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGL 177

Query: 180 KDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKP 239
           KDL ALAY DSVLLVS VE TLIPKLKYLES+GF++ E V MVLRCP L TFSIENNFKP
Sbjct: 178 KDLEALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSEIVGMVLRCPALLTFSIENNFKP 237

Query: 240 KFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNE 299
           KFEYF++E+  KLEELK+FPQYFAFSLEKRIKPR+++ + +G ++ L +MLKT+D EF E
Sbjct: 238 KFEYFSVEMHKKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRE 297

Query: 300 LIKPKPG 306
           L+    G
Sbjct: 298 LLAEGGG 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483906|ref|XP_003633033.1| PREDICTED: uncharacterized protein LOC100853685 [Vitis vinifera]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/301 (71%), Positives = 251/301 (83%), Gaps = 3/301 (0%)

Query: 1   MLTSAATALHSLCISSQTPSPTSSSSPSNSQQLNIHLSTKPKSLLQNHPLYPPTQANLSF 60
           M ++AATA HS   S      + SS PSNS Q N  L+ KPK++LQ HPLY P  +NLS 
Sbjct: 1   MPSTAATAYHS---SPCFSLQSPSSLPSNSHQPNNPLTIKPKNVLQKHPLYTPAHSNLSL 57

Query: 61  QIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPK 120
           Q KEKILCLEIMGVDSGKALSLNPSLH+A+L+SI  IISFLQSKGI QKDL RIFGMCPK
Sbjct: 58  QFKEKILCLEIMGVDSGKALSLNPSLHTATLHSIHSIISFLQSKGIHQKDLGRIFGMCPK 117

Query: 121 VLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFK 180
           +LT+NI+TDL PVFNFLS DL+VP+  FR+VINKCPRLL SS RDQLKPAL +LQRLGF+
Sbjct: 118 LLTSNIRTDLIPVFNFLSQDLKVPDQSFRRVINKCPRLLVSSVRDQLKPALIFLQRLGFQ 177

Query: 181 DLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPK 240
           DL ALA+QD VLLVS VE TLIPKL+YL S+G S+ +AV MVLRCPGLFTFS+ENNFKPK
Sbjct: 178 DLEALAHQDPVLLVSSVEKTLIPKLEYLVSLGMSRADAVGMVLRCPGLFTFSVENNFKPK 237

Query: 241 FEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNEL 300
           FEYF  E++G LEELKEFPQYFAFSLEKRIKPRHM+A++NG ++ L +MLK++DEEF EL
Sbjct: 238 FEYFVGEMEGNLEELKEFPQYFAFSLEKRIKPRHMEAVQNGVKVPLALMLKSTDEEFREL 297

Query: 301 I 301
           +
Sbjct: 298 M 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530561|ref|XP_003533849.1| PREDICTED: uncharacterized protein LOC100788221 [Glycine max]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/306 (67%), Positives = 247/306 (80%), Gaps = 9/306 (2%)

Query: 3   TSAATALHS-LC-ISSQTPSPTSSSSPSNSQQLNIHLSTKPKSLLQNHPLYPPTQANLSF 60
            + A ALHS LC ISS  PS +   SPS      IH+S KPKSLLQNHPLY PT   LS 
Sbjct: 4   AAGAIALHSSLCTISSDKPS-SPLRSPS------IHVSPKPKSLLQNHPLYTPTHTKLSL 56

Query: 61  QIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPK 120
           + KEKILCLE+MGVD+GKALS NP L +A++ SI  IISFL SKG+ +KDLPRIFGMCPK
Sbjct: 57  EFKEKILCLEVMGVDAGKALSQNPDLRTATMESIHSIISFLLSKGLQEKDLPRIFGMCPK 116

Query: 121 VLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFK 180
           +LT++IKTDL PVF+F+  +L+VPE+ FR+V+NKCPRLLTSS +DQL+P L YL+RLGFK
Sbjct: 117 ILTSDIKTDLNPVFDFILSELKVPENSFRRVVNKCPRLLTSSVKDQLRPCLVYLRRLGFK 176

Query: 181 DLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPK 240
           DL ALAYQDSVLLVS VENTLIPKLK+LE++G SKDE   MVLRCP L TFSIENNF+PK
Sbjct: 177 DLGALAYQDSVLLVSNVENTLIPKLKFLETLGLSKDEVRSMVLRCPALLTFSIENNFQPK 236

Query: 241 FEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNEL 300
           +E+F  E+  KLEELKEFPQYFAFSLE RIKPRHM+ +++G  L+LPVMLK++DEEF EL
Sbjct: 237 YEFFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQSGIALALPVMLKSTDEEFREL 296

Query: 301 IKPKPG 306
           +K   G
Sbjct: 297 VKQGGG 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506312|ref|XP_004162712.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229914, partial [Cucumis sativus]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/282 (71%), Positives = 232/282 (82%)

Query: 25  SSPSNSQQLNIHLSTKPKSLLQNHPLYPPTQANLSFQIKEKILCLEIMGVDSGKALSLNP 84
           SSPSNS Q N  LS KPK+LL  HPLY P  + +S Q KEKILCLEIMGVDSGKALS NP
Sbjct: 1   SSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQTKEKILCLEIMGVDSGKALSQNP 60

Query: 85  SLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVP 144
           SLHS +L SI  +ISFLQSKGI QKD  +IFGMCPK+LT+++KTDL PVFNFLS DL++P
Sbjct: 61  SLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCPKILTSDVKTDLVPVFNFLSEDLKIP 120

Query: 145 EHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPK 204
           + +FRK INKCPRLL SSA DQLKPALFYLQRLG KDL ALAY DSVLLVS VE TLIPK
Sbjct: 121 DQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDLEALAYHDSVLLVSSVEKTLIPK 180

Query: 205 LKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAF 264
           LKYLES+GF++ E V MVLRCP L TFSIENNFKPKFEYF++E+  KLEELK+FPQYFAF
Sbjct: 181 LKYLESLGFTRSEIVGMVLRCPALLTFSIENNFKPKFEYFSVEMHXKLEELKDFPQYFAF 240

Query: 265 SLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNELIKPKPG 306
           SLEKRIKPR+++ + +G ++ L +MLKT+D EF EL+    G
Sbjct: 241 SLEKRIKPRYVETVESGXKVPLSLMLKTTDVEFRELLAEGGG 282

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846790|emb|CAN80627.1| hypothetical protein VITISV_032619 [Vitis vinifera]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/261 (75%), Positives = 229/261 (87%)

Query: 41  PKSLLQNHPLYPPTQANLSFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISF 100
           PK++LQ HPLY P  +NLS Q KEKILCLEIMGVDSGKALSLNPSLH+A+L+SI  IISF
Sbjct: 3   PKNVLQKHPLYTPAHSNLSLQFKEKILCLEIMGVDSGKALSLNPSLHTATLHSIHSIISF 62

Query: 101 LQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLT 160
           LQSKGI QKDL RIFGMCPK+LT+NI+TDL PVFNFLS DL+VP+  FR+VINKCPRLL 
Sbjct: 63  LQSKGIHQKDLGRIFGMCPKLLTSNIRTDLIPVFNFLSQDLKVPDQSFRRVINKCPRLLV 122

Query: 161 SSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVL 220
           SS RDQLKPAL +LQRLGF+DL ALA+QD VLLVS VE TLIPKL+YL S+G S+ +AV 
Sbjct: 123 SSVRDQLKPALIFLQRLGFQDLEALAHQDPVLLVSSVEKTLIPKLEYLVSLGMSRADAVG 182

Query: 221 MVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRN 280
           MVLRCPGLFTFS+ENNFKPKFEYF  E++G LEELKEFPQYFAFSLEKRIKPRHM+A++N
Sbjct: 183 MVLRCPGLFTFSVENNFKPKFEYFVGEMEGNLEELKEFPQYFAFSLEKRIKPRHMEAVQN 242

Query: 281 GARLSLPVMLKTSDEEFNELI 301
           G ++ L +MLK++DEEF EL+
Sbjct: 243 GVKVPLALMLKSTDEEFRELM 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509454|gb|AFK42793.1| unknown [Medicago truncatula]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/271 (72%), Positives = 229/271 (84%)

Query: 36  HLSTKPKSLLQNHPLYPPTQANLSFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIE 95
           +L+ KPKSLLQNHPLY PT   LS Q KEKILCLE+MG+DSGKALS NP+LH+A+L SI 
Sbjct: 43  NLTPKPKSLLQNHPLYTPTNEKLSLQFKEKILCLEVMGIDSGKALSQNPNLHTATLESIH 102

Query: 96  GIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKC 155
            II+FL SKGI  KDLPRIFGMCPK+LT++IKTDL PVF+FL HDL+VP+H FRKVI KC
Sbjct: 103 SIITFLVSKGIQHKDLPRIFGMCPKILTSSIKTDLNPVFDFLIHDLKVPDHSFRKVIKKC 162

Query: 156 PRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSK 215
           PRLLTSS  DQLKPALFYL RLG +DL ALAYQD VLLVS VE T+IPKLK+LES+GF+K
Sbjct: 163 PRLLTSSVVDQLKPALFYLNRLGLRDLEALAYQDCVLLVSNVERTIIPKLKHLESLGFTK 222

Query: 216 DEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHM 275
           +EA  MVLRCP L TFSIENNF+PKFEYF++E+KGKLEELKEFPQYF+FSLE RIK RHM
Sbjct: 223 EEARCMVLRCPALLTFSIENNFQPKFEYFSVEMKGKLEELKEFPQYFSFSLENRIKVRHM 282

Query: 276 QALRNGARLSLPVMLKTSDEEFNELIKPKPG 306
           + + +G  L L +MLK++D+EF ELIK   G
Sbjct: 283 EVVESGINLPLSLMLKSTDDEFRELIKKGAG 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638122|gb|ACU19375.1| unknown [Glycine max]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/306 (67%), Positives = 246/306 (80%), Gaps = 9/306 (2%)

Query: 3   TSAATALHS-LC-ISSQTPSPTSSSSPSNSQQLNIHLSTKPKSLLQNHPLYPPTQANLSF 60
            + A ALHS LC ISS  PS +   SPS      IH+S KPKSLLQNHPLY PT   LS 
Sbjct: 4   AAGAIALHSSLCTISSDKPS-SPLRSPS------IHVSPKPKSLLQNHPLYTPTHTKLSL 56

Query: 61  QIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPK 120
           + KEKILCLE+MGVD+GKALS NP L +A++ SI  IISFL SKG+ +KDLPRIFGMCPK
Sbjct: 57  EFKEKILCLEVMGVDAGKALSQNPDLRTATMESIHSIISFLLSKGLQEKDLPRIFGMCPK 116

Query: 121 VLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFK 180
           +LT++IKTDL PVF+F+  +L+VPE+ FR+V+NKCPRLLTSS +DQL+P L YL+RLGFK
Sbjct: 117 ILTSDIKTDLNPVFDFILSELKVPENSFRRVVNKCPRLLTSSVKDQLRPCLVYLRRLGFK 176

Query: 181 DLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPK 240
           DL ALAYQD VLLVS VENTLIPKLK+LE++G SKDE   MVLRCP L TFSIENNF+PK
Sbjct: 177 DLGALAYQDFVLLVSNVENTLIPKLKFLETLGLSKDEVRSMVLRCPALLTFSIENNFQPK 236

Query: 241 FEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNEL 300
           +E+F  E+  KLEELKEFPQYFAFSLE RIKPRHM+ +++G  L+LPVMLK++DEEF EL
Sbjct: 237 YEFFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQSGIALALPVMLKSTDEEFREL 296

Query: 301 IKPKPG 306
           +K   G
Sbjct: 297 VKQGGG 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450633|ref|XP_003595593.1| MTERF-like protein [Medicago truncatula] gi|355484641|gb|AES65844.1| MTERF-like protein [Medicago truncatula]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/271 (72%), Positives = 229/271 (84%)

Query: 36  HLSTKPKSLLQNHPLYPPTQANLSFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIE 95
           +L+ KPKSLLQNHPLY PT   LS Q KEKILCLE+MG+DSGKALS NP+LH+A+L SI 
Sbjct: 43  NLTPKPKSLLQNHPLYTPTNEKLSLQFKEKILCLEVMGIDSGKALSQNPNLHTATLESIH 102

Query: 96  GIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKC 155
            II+FL SKGI  KDLPRIFGMCPK+LT++IKTDL PVF+FL HDL+VP+H FRKVI KC
Sbjct: 103 SIITFLVSKGIQHKDLPRIFGMCPKILTSSIKTDLNPVFDFLIHDLKVPDHSFRKVIKKC 162

Query: 156 PRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSK 215
           PRLLTSS  DQLKPALFYL RLG +DL ALAYQD VLLVS VE T+IPKLK+LES+GF+K
Sbjct: 163 PRLLTSSVVDQLKPALFYLNRLGLRDLEALAYQDCVLLVSNVERTIIPKLKHLESLGFTK 222

Query: 216 DEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHM 275
           +EA  MVLRCP L TFSIENNF+PKFEYF++E+KGKLEELKEFPQYF+FSLE RIK RHM
Sbjct: 223 EEARCMVLRCPALLTFSIENNFQPKFEYFSVEMKGKLEELKEFPQYFSFSLENRIKVRHM 282

Query: 276 QALRNGARLSLPVMLKTSDEEFNELIKPKPG 306
           + + +G  L L +MLK++D+EF ELIK   G
Sbjct: 283 EVVESGINLPLSLMLKSTDDEFRELIKKGAG 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556529|ref|XP_003546577.1| PREDICTED: uncharacterized protein LOC100801948 [Glycine max]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/302 (67%), Positives = 244/302 (80%), Gaps = 9/302 (2%)

Query: 3   TSAATALHS-LC-ISSQTPSPTSSSSPSNSQQLNIHLSTKPKSLLQNHPLYPPTQANLSF 60
            + A ALHS LC ISS  PS    S P       IH+S KPKSL QNHPLY PT   LS 
Sbjct: 4   AAGAVALHSSLCNISSDKPSSPLRSPP-------IHVSPKPKSLFQNHPLYTPTHTKLSL 56

Query: 61  QIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPK 120
           + KEKILCLE+MGVD+GKALS NP L +A++ SI  II+FL SKG+ +KDLPR+FGMCPK
Sbjct: 57  EFKEKILCLEVMGVDAGKALSQNPDLRTATMESIHCIITFLLSKGLQEKDLPRLFGMCPK 116

Query: 121 VLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFK 180
           +LT++IKTDL PVF+F+ ++L+VP ++FR+V+NKCPRLLTSS +DQL+P L YL+RLGFK
Sbjct: 117 ILTSDIKTDLNPVFDFILNELKVPGNNFRRVVNKCPRLLTSSVKDQLRPCLVYLRRLGFK 176

Query: 181 DLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPK 240
           DL ALAYQDSVLLVS VENTLIPKLK+LE++G SKDE   MVLRCP L TFSIENNF+PK
Sbjct: 177 DLGALAYQDSVLLVSNVENTLIPKLKFLETLGLSKDEVRSMVLRCPALLTFSIENNFQPK 236

Query: 241 FEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNEL 300
           +EYF  E+  KLEELKEFPQYFAFSLE RIKPRHM+ +++G  L+LPVMLK++DEEF EL
Sbjct: 237 YEYFAGEMGRKLEELKEFPQYFAFSLENRIKPRHMKVVQSGIALALPVMLKSTDEEFREL 296

Query: 301 IK 302
           +K
Sbjct: 297 VK 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
TAIR|locus:2062328	303	AT2G34620 "AT2G34620" [Arabido	0.860	0.874	0.645	6.5e-90
TAIR|locus:2056745	283	EMB93 "EMBRYO DEFECTIVE 93" [A	0.766	0.833	0.434	5.2e-49
TAIR|locus:2039240	333	EMB3114 "AT2G36000" [Arabidops	0.795	0.735	0.361	2e-40
TAIR|locus:2087926	274	AT3G18870 "AT3G18870" [Arabido	0.821	0.923	0.348	2.4e-35
TAIR|locus:505006461	493	MDA1 "AT4G14605" [Arabidopsis	0.775	0.484	0.295	1.5e-24
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.827	0.397	0.275	1.9e-22
TAIR|locus:2207420	591	AT1G78930 "AT1G78930" [Arabido	0.814	0.424	0.271	1e-19
TAIR|locus:2162092	496	AT5G55580 "AT5G55580" [Arabido	0.847	0.526	0.242	5.8e-17
TAIR|locus:2139394	541	BSM "AT4G02990" [Arabidopsis t	0.844	0.480	0.247	3.9e-14
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.730	0.443	0.228	1.4e-09

TAIR|locus:2062328 AT2G34620 "AT2G34620" [Arabidopsis thaliana (taxid:3702)]

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 173/268 (64%), Positives = 211/268 (78%)

Query:    37 LSTKP---KSLLQNHPLYPPTQANLSFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNS 93
             LSTKP   K+ L +HPL+      ++ Q+KEKILCLE+MG+DSGKALSLNP L SA L+S
Sbjct:    27 LSTKPTTIKTNLHSHPLFTVADQTVTLQMKEKILCLELMGIDSGKALSLNPCLCSAPLDS 86

Query:    94 IEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVIN 153
             I+ ++ FLQSKGI   DLPRI GMCPK+LT++++T+L PVF FLS+DL VPE+ FR+VI 
Sbjct:    87 IQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLSNDLHVPENAFRRVIK 146

Query:   154 KCPRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGF 213
             KCPRLL SS  DQLKPALFYLQRLG KDL ALAYQD +LLVS VE+TLIPKL++LESIGF
Sbjct:   147 KCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPILLVSSVEHTLIPKLRFLESIGF 206

Query:   214 SKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNXXXXXXXXXXXXFPQYFAFSLEKRIKPR 273
             S+ EA+ M+LRCP LFTFSIENNFKPK +YF             FPQYFAFSLEKRIKPR
Sbjct:   207 SRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIKPR 266

Query:   274 HMQALRNGARLSLPVMLKTSDEEFNELI 301
             H++++  G  L L +MLK++DEEF +L+
Sbjct:   267 HLESMERGLELPLSLMLKSTDEEFEQLL 294

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2056745 EMB93 "EMBRYO DEFECTIVE 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 103/237 (43%), Positives = 155/237 (65%)

Query:    63 KEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVL 122
             +EK++ L+ + VD  KAL +NPSL SA ++S+  + + L S G+ +  + RI  M P +L
Sbjct:    33 REKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLL 92

Query:   123 TANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDL 182
             T++ ++++ PV  FLS+++ + E D  K I++CPRLL SS   QL+PAL +L+ LGF   
Sbjct:    93 TSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGR 152

Query:   183 NALAYQDSVLLVSKVENTLIPKLKYLES-IGFSKDEAVLMVLRCPGLFTFSIENNFKPKF 241
             + +  +++VLLVS VE TLIPK++YLE  +GF+++E   MV+R P L T+S++NN  PK 
Sbjct:   153 DTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKV 212

Query:   242 EYFNXXXXXXXXXXXXFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFN 298
             E+F             FPQYF+FSLE++IKPRH     +G  + L  MLK SD +FN
Sbjct:   213 EFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFN 269

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0071452 "cellular response to singlet oxygen" evidence=IGI

TAIR|locus:2039240 EMB3114 "AT2G36000" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 91/252 (36%), Positives = 141/252 (55%)

Query:    54 TQANLSFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGI--LQKDL 111
             T   L   I EK++ L+ +G+D    ++ +P L S +L+++E ++ ++ +  I    +D 
Sbjct:    65 TTETLESSIHEKLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDF 124

Query:   112 PRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPE-HDFRKVINKCPRLLTSSARDQLKPA 170
              R+  MCP++LT+ + +   PV  FL  ++ V    D R+ + + PRLL  S   QL+P 
Sbjct:   125 RRLVSMCPELLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPT 184

Query:   171 LFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFT 230
             L++LQR+G  D +   Y    LL   V+N L+P++ Y E +GFS+  A  M  R P LF 
Sbjct:   185 LYFLQRIGILDPHKHTY----LLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFN 240

Query:   231 FSIENNFKPKFEYFNXXXXXXXXXXXXFPQYFAFSLEKRIKPRHMQALRNGARLSLPVML 290
             +SI  N++PK +Y              FPQYF+FSLE RIKPRH      G R  LPVML
Sbjct:   241 YSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVML 300

Query:   291 KTSDEEFNELIK 302
             KT++  F + ++
Sbjct:   301 KTNEAGFRDTLE 312

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2087926 AT3G18870 "AT3G18870" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 94/270 (34%), Positives = 147/270 (54%)

Query:    39 TKPKSLLQNHPLYPPTQANLSFQI--KEKILCLEIMGVDSGKALSLNPSLHSAS--LNSI 94
             + P S   + PLY      L FQ   +E +  L  +G+     +  NP L   +  L+ I
Sbjct:    17 SSPPSPSSSKPLY------LKFQTSHRENLRHLSSLGI-----VPQNPRLAPPANDLSVI 65

Query:    95 EGIISFLQSKGILQKDLPRIFGMCPKVLTANIK-TDLEPVFNFLSHDLEVPEHDFRKVIN 153
                ++ L+SKGI  +D PR+  +CP++ +     + L+PVF+FL+ +L     + R +I 
Sbjct:    66 LSAVNLLKSKGISDEDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLIV 125

Query:   154 KCPRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGF 213
              CP +L S     L+P L YL+ LG ++LN  +  ++ +L ++VE  L  K+++L+SIGF
Sbjct:   126 NCPNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVEK-LRAKMRFLKSIGF 184

Query:   214 SKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNXXXXXXXXXXXXFPQYFAFSLEKRIKPR 273
               +EA  +  R P +F +S+E+N +PKFE+              FPQYFAFSL KRI+PR
Sbjct:   185 EHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPR 244

Query:   274 HMQALRNGARLSLPVMLKTSDEEFNELIKP 303
             H    +   R+SL  ML   D++F    KP
Sbjct:   245 HWHLKKKNVRVSLSRMLMWGDQKFYSKWKP 274

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:505006461 MDA1 "AT4G14605" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 1.5e-24, P = 1.5e-24
 Identities = 72/244 (29%), Positives = 124/244 (50%)

Query:    62 IKEKILCLEIMGVDSGKALSLNPSLHSASL-NSIEGIISFLQSKGILQKDLPRIFGMCPK 120
             + E +L L I   D    L   P +   SL ++++  ++FL++ GI +    +I    P 
Sbjct:   235 VVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPA 294

Query:   121 VLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFK 180
             +LT + +  L     FLS    + E    +++ +CP +++ S  D+L+P + Y + L   
Sbjct:   295 ILTYS-RQKLTSTVEFLSQT-GLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNV- 351

Query:   181 DLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPK 240
             D+  L ++        +E+ L P  ++    GF  DE  +M+ R   L+TFS++ N  PK
Sbjct:   352 DVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPK 411

Query:   241 FEYFNXXXXXXXXXXXXFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNEL 300
             ++YF             FPQ+F +SL++RIKPR+    R+G RL L  +L  S  EF ++
Sbjct:   412 WDYFQTMDYPKSELVK-FPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKV 470

Query:   301 IKPK 304
             +K K
Sbjct:   471 VKKK 474

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 73/265 (27%), Positives = 126/265 (47%)

Query:    51 YPPTQANLSFQIKEK-ILCLEIMGVDS---GKALSLNPSLHSASLNSI-EGIISFLQSKG 105
             YP      SFQ+ EK I  L+  G+ +   G+ L+  P L   S+    + ++ +    G
Sbjct:   340 YPKIIGFFSFQVMEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLG 399

Query:   106 ILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARD 165
             I ++ + RI  + P +   +++  + P   FL  ++ +P      ++ K P LLT+S   
Sbjct:   400 IPKEGMKRILVVKPILYCIDLEKTIAPKVRFLQ-EMGIPNEAIGNMLVKFPSLLTNSLYK 458

Query:   166 QLKPA-LFYLQRLGF--KDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMV 222
             +++P  +F L R G   KD+  +   D  LL   +   L P ++Y  S+G    +   M+
Sbjct:   459 KIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMI 518

Query:   223 LRCPGLFTFSIENNFKPKFEYFNXXXXXXXXXXXXFPQYFAFSLEKRIKPRHMQALRNGA 282
                P L  ++++N  +PK+ Y              FP++F++SLE+RI PRH   + N  
Sbjct:   519 ADFPMLLRYNVDN-LRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRV 577

Query:   283 RLSLPVMLKTSDEEFNELIKPKPGR 307
                L  ML  +DEEF   ++ K  R
Sbjct:   578 NFKLRYMLACTDEEFERRVRDKVER 602

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2207420 AT1G78930 "AT1G78930" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 70/258 (27%), Positives = 118/258 (45%)

Query:    44 LLQNHP--LYPPTQANLSFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFL 101
             LL  +P  L P  Q N S  I        ++ +D   A+   P L   S +++E ++   
Sbjct:   320 LLLKYPWILSPSIQENYS-HIGSFFYSESVLKMDIDHAIRRWPLLLGCSASNMEMMVKEF 378

Query:   102 QSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTS 161
                G+  K + ++    P++L    +  L+ V  FL  DL   +    +++ +CP +   
Sbjct:   379 DKLGVRDKRMGKVIPKMPQLLLCKPQEFLKVVC-FLE-DLGFQKEIVGQILCRCPEIFGC 436

Query:   162 SARDQLKPALFYLQRLGFKDLN--ALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAV 219
             S    L+  L +L R G    +   +  +    L+   + T++P+LKYL  IG S+ E  
Sbjct:   437 SIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISEREIA 496

Query:   220 LMVLRCPGLFTFSIENNFKPKFEYFNXXXXXXXXXXXXFPQYFAFSLEKRIKPRHMQALR 279
              M+ +   +  +SI+   +PKFE+              +P+YF++SLEKRIKPR      
Sbjct:   497 FMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRFRVLKG 556

Query:   280 NGARLSLPVMLKTSDEEF 297
                  +L  ML  +DEEF
Sbjct:   557 RNIECTLQEMLGKNDEEF 574

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2162092 AT5G55580 "AT5G55580" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 5.8e-17, P = 5.8e-17
 Identities = 67/276 (24%), Positives = 130/276 (47%)

Query:    36 HLST---KPKSLLQNHPLYPPT-QANLSFQIKEKILCLEIMGV---DSGKALSLNPSLHS 88
             +LST   K    +Q +  + P+ Q N+ F  +E++  L  +GV   D  + L   P +  
Sbjct:   190 YLSTFGLKESHFVQMYERHMPSLQINV-FSAQERLDYLLSVGVKHRDIKRMLLRQPQILQ 248

Query:    89 ASL-NSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHD 147
              ++ N+++  ISFL   GI    + +I    P + + +++  L P   +L  ++ + E D
Sbjct:   249 YTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGIKETD 308

Query:   148 FRKVINKCPRLLTSSARDQLKPALFYLQR-LGF-KD-LNALAYQDSVLLVSKVENTLIPK 204
               KV+   P++L             +L + LG  +D +  +  +   LL   +++  +P+
Sbjct:   309 VGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPR 368

Query:   205 LKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNXXXXXXXXXXXXFPQYFAF 264
             + +L SIG    + + ++     + + S+E+N KPK+ Y              +P Y + 
Sbjct:   369 INFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSL 428

Query:   265 SLEKRIKPRH--MQALRNGARLSLPVM-LKTSDEEF 297
             SL++RI+PRH  +  L+   +   P+  L  +DE F
Sbjct:   429 SLDQRIRPRHRFLVELKKVRKGPFPLSSLVPNDESF 464

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2139394 BSM "AT4G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 3.9e-14, P = 3.9e-14
 Identities = 67/271 (24%), Positives = 116/271 (42%)

Query:    37 LSTKPKSLLQNHPLYPPTQA-NLSFQIKEKILCLEIMGV---DSGKALSLNPSLHSASL- 91
             L  KP  + +    YP      L   +   +  L  +GV   + G  L+  P +    + 
Sbjct:   225 LDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVA 284

Query:    92 NSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKV 151
               I+ ++ +L+  GI +    R+    P +L   +   ++P    L  D  V E     +
Sbjct:   285 RIIKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQ-DFNVRETSLPSI 343

Query:   152 INKCPRLLTSSARDQL---KPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYL 208
             I + P ++    + +L   +  L     L  +DL +L  +     VS  E+ ++  + +L
Sbjct:   344 IAQYPEIIGIDLKPKLDTQRKLLCSAIHLNPEDLGSLI-ERMPQFVSLSESPMLKHIDFL 402

Query:   209 ESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNXXXXXXXXXXXXFPQYFAFSLEK 268
                GFS D+   MV+ CP +   ++    K  FEYF             FP +F + LE 
Sbjct:   403 TKCGFSIDQTREMVIGCPQVLALNL-GIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLES 461

Query:   269 RIKPRHMQALRNGARLSLPVMLKTSDEEFNE 299
              +KPRH + ++ G + SL  ML  SDE+F +
Sbjct:   462 TVKPRHKKIIKKGIKCSLAWMLNCSDEKFEQ 492

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008380 "RNA splicing" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0032502 "developmental process" evidence=IMP

GO:0042793 "transcription from plastid promoter" evidence=IMP

GO:0042794 "rRNA transcription from plastid promoter" evidence=IMP

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 53/232 (22%), Positives = 106/232 (45%)

Query:    75 DSGKALSLNPSLHSASLNS-IEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPV 133
             D G  ++  P L    + + I+ ++ +L S G+ +K + R+      ++  N++  ++P 
Sbjct:   232 DIGPMVTQYPYLLGMRVGTMIKPLVDYLISIGLPKKIVARMLEKRSYIVGYNLEETVKPN 291

Query:   134 FNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFK-DLNALA--YQDS 190
              + L     V +     +I + P++L    + ++    ++   L  K D    A   +  
Sbjct:   292 VDCLI-SFGVKKELLPLLIAQYPQILGLPVKAKMSTQQYFFS-LKLKIDPEGFARVVEKM 349

Query:   191 VLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNXXXXX 250
               +VS  +N ++  +++L    F  ++   MV+RCP +    +E   K  + ++      
Sbjct:   350 PQIVSLKQNVIMKPIEFLLGRAFQVEDIAKMVVRCPQILCSRVEL-MKNSYYFYKTEMGR 408

Query:   251 XXXXXXXFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNELIK 302
                    +P+YF +SLE RIKPR+ +    G R SL   L  SD+ F E ++
Sbjct:   409 PMKELVEYPEYFTYSLESRIKPRYQKLQSKGIRSSLNWFLNCSDQRFEERLQ 460

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028344001 SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (304 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	308
pfam02536	345	pfam02536, mTERF, mTERF	2e-44
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	1e-24
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	2e-07
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	4e-04

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score =  154 bits (391), Expect = 2e-44
 Identities = 86/332 (25%), Positives = 134/332 (40%), Gaps = 75/332 (22%)

Query: 42  KSLLQNHPLYPPTQANLSFQIKEKILCLEIMG-VDSGKALSLNPS-LHSASLNSIEGIIS 99
            ++++++PL     A  + Q K + L        +  K +S  P  L    + SI  +  
Sbjct: 15  STIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILGKKGVKSISSVYD 74

Query: 100 FLQSKGILQKDLPRIF-------------------------GMCPKVLTANIKTDLEPVF 134
           FL+   +   D                              G+ PK+L + + +   PV 
Sbjct: 75  FLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLLFSLLISRPRPVC 134

Query: 135 NF--------LSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFK--DLNA 184
                        ++      F++VI K PRLL  S+   +KP + +L+ LGF   D+ A
Sbjct: 135 GKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVEDVWA 194

Query: 185 LAYQDSVLLVSKVENTL--------------------------------IPKLKYLESIG 212
           +  +   LL S  +  L                                + K+++L  +G
Sbjct: 195 ILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYSEQKILNKIEFLLGLG 254

Query: 213 FSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKP 272
           FS++E   MV RCP L   S+E   K K E+   E+   L+EL EFPQ F +SLEKRIKP
Sbjct: 255 FSREEIAKMVKRCPQLLGLSVEKV-KKKTEFLVKEMNWPLKELVEFPQVFGYSLEKRIKP 313

Query: 273 RH-----MQALRNGARLSLPVMLKTSDEEFNE 299
           R      + +       SL  MLK +DEEF +
Sbjct: 314 RCNVVKALMSKGKSILPSLSSMLKCTDEEFLQ 345

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score =  102 bits (257), Expect = 1e-24
 Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 36/202 (17%)

Query: 101 LQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLT 160
           L   G+ ++ LP +    P +L  ++K  L     +L+  L++   DF +VI K P++++
Sbjct: 275 LLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVS 334

Query: 161 SSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVL 220
            +    LK   F   R                                   GFS  +   
Sbjct: 335 LNRNVALKHVEFLRGR-----------------------------------GFSAQDVAK 359

Query: 221 MVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRN 280
           MV+RCP +   ++E   KP  E+F  E+K  L+EL EFP YF + LE RIKPR+ +  + 
Sbjct: 360 MVVRCPQILALNLEI-MKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKK 418

Query: 281 GARLSLPVMLKTSDEEFNELIK 302
           G + SL   L  SD++F + + 
Sbjct: 419 GIKCSLAWFLNCSDDKFEQRMS 440

Length = 487

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 97  IISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCP 156
           ++ +L+  G+ +  LP +    P+VL A++  DL PV  +L   L+V   D  +V+ + P
Sbjct: 127 VLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYL-QGLDVKRQDIPRVLERYP 185

Query: 157 RLLTSSARDQLKPALFYLQRLGF--KDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFS 214
            LL       +  ++ YL  +G   +D+  +  +   +L  +V N + PK+ YLES+G  
Sbjct: 186 ELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLP 245

Query: 215 KDEAVLMVLRCPGLFTFSIENNFKPKFE 242
           +     ++ + P +  F +E   KP  E
Sbjct: 246 RLAVARILEKRPYILGFDLEETVKPNVE 273

Length = 487

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 45/164 (27%)

Query: 152 INKCPRLLTSSARDQLKPALFYLQRLGFK--DLNALAYQDSVLLVSKVENTLIPKLKYLE 209
           IN+ P +L  S +  + P L YL++LG     L  L  +   +L + V   L P +KYL+
Sbjct: 109 INEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQ 168

Query: 210 SIGFSKDEAVLMVLRCPGLFTFSIE----------------------------------- 234
            +   + +   ++ R P L  F +E                                   
Sbjct: 169 GLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRV 228

Query: 235 -NNFKPKFEY-----FNLEIKGKLEELKEFPQYFAFSLEKRIKP 272
            NN KPK +Y            ++ E +  P    F LE+ +KP
Sbjct: 229 GNNIKPKVDYLESLGLPRLAVARILEKR--PYILGFDLEETVKP 270

Length = 487

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	99.97
KOG1267	413	consensus Mitochondrial transcription termination	99.86
KOG1267	413	consensus Mitochondrial transcription termination	99.77
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.17
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	97.08
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	93.6

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=2.7e-49  Score=384.74  Aligned_cols=263  Identities=25%  Similarity=0.498  Sum_probs=238.9

Q ss_pred             ccc-ccchhhhhhCCCCCCCCCChhhhHHHHHHHHhhcCCCh---hhhhhhCCCcccCCcc-CHHHHHHHHHhCCCCCCC
Q 035716           36 HLS-TKPKSLLQNHPLYPPTQANLSFQIKEKILCLEIMGVDS---GKALSLNPSLHSASLN-SIEGIISFLQSKGILQKD  110 (308)
Q Consensus        36 ~~~-~~~~~l~~~~P~~~~~~~d~~~~~~~~l~~L~~~G~~~---~~il~~~P~lL~~s~~-~l~~~v~~L~~lGls~~~  110 (308)
                      .++ ..++.++.++|.++.  +++..++.|+++||+++|++.   ++++.++|.+|+++++ ++.++++||.++|++.++
T Consensus       135 G~s~~~i~~lI~~~P~lL~--~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~  212 (487)
T PLN03196        135 GVTRSSLPELLRRYPQVLH--ASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRD  212 (487)
T ss_pred             CCCHHHHHHHHHhCCceec--ccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHH
Confidence            344 567889999999998  789889999999999999975   7889999999999998 599999999999999999


Q ss_pred             hhhhhhcCCceeeCCcccchhHHHHHhhhhcCCCcchHHHHHhhcCccccccchhchHHHHHHHHHcCCCCc--ch----
Q 035716          111 LPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDL--NA----  184 (308)
Q Consensus       111 i~~li~~~P~lL~~~~e~~l~~~l~fL~~~~G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~--~~----  184 (308)
                      +++++.++|++|+++++++++|+++||+ ++|++.++|++++.++|++|++++++++++++++|+++|+++.  ..    
T Consensus       213 i~~il~~~P~iL~~sve~~i~P~v~fL~-~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~  291 (487)
T PLN03196        213 IGPMLTRFPEILGMRVGNNIKPKVDYLE-SLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQ  291 (487)
T ss_pred             HHHHHHhCcHHhhcChhhhHHHHHHHHH-HcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            9999999999999999999999999996 8999999999999999999999998899999999999998742  12    


Q ss_pred             ---------------------------------hhhhchhhhhcchhhhHHHHHHHHHHcCCCHHHHHHHHhcCcceeee
Q 035716          185 ---------------------------------LAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTF  231 (308)
Q Consensus       185 ---------------------------------ii~~~P~ll~~~~~~~l~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~  231 (308)
                                                       ++.++|.++..+ +++|.++++||+++||+.++|..|+.++|.+|++
T Consensus       292 ~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lS-e~kl~~kvefL~~~Gls~edI~~mv~k~P~lL~~  370 (487)
T PLN03196        292 YPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLN-RNVALKHVEFLRGRGFSAQDVAKMVVRCPQILAL  370 (487)
T ss_pred             CCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhccc-HHHHHHHHHHHHHcCCCHHHHHHHHHhCCceeec
Confidence                                             344566666666 4578999999999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHhCCChHHHhhcCccccccccCchHHHHHHHHHcCCCCCchhhcccCHHHHHHHhcc
Q 035716          232 SIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNELIKP  303 (308)
Q Consensus       232 s~e~~l~~k~~fL~~~mg~~~~~l~~~P~~L~~sle~ri~pR~~~L~~~G~~~~l~~il~~sd~~F~~~~~~  303 (308)
                      |.+ +|++|++||.++||++.++|++||++|+||+|+||+|||++|+++|+++++.++|++||++|+++|+.
T Consensus       371 S~~-~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~~L~~kGl~~sL~~~L~~sd~~F~~r~v~  441 (487)
T PLN03196        371 NLE-IMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKFEQRMSG  441 (487)
T ss_pred             cHH-HHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHHHHHHcCCCCCHHHHhccCHHHHHHHHhh
Confidence            995 99999999999999999999999999999999999999999999999999999999999999999983

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=3.7e-43  Score=330.16  Aligned_cols=257  Identities=37%  Similarity=0.593  Sum_probs=198.8

Q ss_pred             ccchhhhhhCCCCCCCCCChhhhHHHHHHHHhhcCCCh---hhhhhhCCCcccCCcc-CHHHHHHHHHhCCCCCCChhhh
Q 035716           39 TKPKSLLQNHPLYPPTQANLSFQIKEKILCLEIMGVDS---GKALSLNPSLHSASLN-SIEGIISFLQSKGILQKDLPRI  114 (308)
Q Consensus        39 ~~~~~l~~~~P~~~~~~~d~~~~~~~~l~~L~~~G~~~---~~il~~~P~lL~~s~~-~l~~~v~~L~~lGls~~~i~~l  114 (308)
                      .+|..+++++|.++.  +|..+.+.|+++||.++|++.   ++++.++|.++..+.+ ++.+.++||+++|++++++.++
T Consensus        12 ~~i~~~i~~~P~~l~--~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~s~~d~~~~   89 (345)
T PF02536_consen   12 SQISKLIRRYPRLLL--CDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGLSDEDIVKV   89 (345)
T ss_dssp             S-HHHHHH-H-HHHH--T-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS-HHHHHHH
T ss_pred             HHHHHHHHhCCceEE--ecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcCCHHHHHHH
Confidence            678889999998888  788889999999999999984   7899999999999965 6999999999999999999999


Q ss_pred             hhcCCceeeCCcccchhHHHHHhhhhcC----------------------------------CCcchHHHHHhhcCcccc
Q 035716          115 FGMCPKVLTANIKTDLEPVFNFLSHDLE----------------------------------VPEHDFRKVINKCPRLLT  160 (308)
Q Consensus       115 i~~~P~lL~~~~e~~l~~~l~fL~~~~G----------------------------------~~~~~i~~li~~~P~lL~  160 (308)
                      +.++|++|..+.+.++.++++||+ ++|                                  ++++++.+++.++|+++.
T Consensus        90 l~r~p~~l~~~~~~~l~~~v~~L~-~lGv~~~~~~~~l~~~~~~~~~~~~~~~~v~~l~~lG~~~~~~~~vi~~~P~~l~  168 (345)
T PF02536_consen   90 LKRYPRILSFSVEENLSPNVAFLR-SLGVPPSQIISLLISRPPLFLSSEKIKERVEFLKELGFDPEKIGRVIAKNPRLLL  168 (345)
T ss_dssp             HHH-SHHHHS---HHHHHHHHHHH-HTT--HHHHHHHHHH-CHHHHS-HHHHCHHHHHCCCTSSHHHHCCCHHHHHHHHC
T ss_pred             HHhcchhhccchHhhhhhhhhHHh-hcCCcHHHHHHHHHhcCccccchhHHHHHHHHHHHhCCCchhhcccccccchhhc
Confidence            999999998877667888888885 455                                  455555557777776666


Q ss_pred             ccchhchHHHHHHHHHcCCCCc--chhhhhchhhhhcchhh--------------------------------hHHHHHH
Q 035716          161 SSARDQLKPALFYLQRLGFKDL--NALAYQDSVLLVSKVEN--------------------------------TLIPKLK  206 (308)
Q Consensus       161 ~~~~~~l~~~v~~L~~lG~~~~--~~ii~~~P~ll~~~~~~--------------------------------~l~~~v~  206 (308)
                      .+.+++++++++||+++|++..  .+++.++|.++..+.++                                ++.++++
T Consensus       169 ~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~~l~~~i~  248 (345)
T PF02536_consen  169 SDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEEKLKPKIE  248 (345)
T ss_dssp             GSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccchHhHHHHHH
Confidence            6667888999999999998753  45666667666665543                                6999999


Q ss_pred             HHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhCCChHHHhhcCccccccccCchHHH---HHHHHHcC--
Q 035716          207 YLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPR---HMQALRNG--  281 (308)
Q Consensus       207 ~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg~~~~~l~~~P~~L~~sle~ri~pR---~~~L~~~G--  281 (308)
                      ||+++||+++|+++|+.++|.||++|.| ++++|++||.++||++.++|+++|++|+||+|+||+||   +++|+++|  
T Consensus       249 ~L~~lG~s~~ei~~mv~~~P~iL~~s~e-~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR~~~~~~l~~~g~~  327 (345)
T PF02536_consen  249 FLQSLGFSEEEIAKMVRRFPQILSYSIE-KLKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPRYEVLKVLKSKGLI  327 (345)
T ss_dssp             HHHTTT--HHHHHHHHHHSGGGGGS-HH-HHHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHHHHHHHTT--TTTG
T ss_pred             HHHHhcCcHHHHHHHHHhCcchhhcchh-hhhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhHHHHHHHHHHCcCC
Confidence            9999999999999999999999999998 69999999999999999999999999999999999999   55678999  


Q ss_pred             CCCCchhhcccCHHHHHH
Q 035716          282 ARLSLPVMLKTSDEEFNE  299 (308)
Q Consensus       282 ~~~~l~~il~~sd~~F~~  299 (308)
                      .++++.+++.+||++|++
T Consensus       328 ~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  328 INPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             GGGGS-HHHHHHHHHHT-
T ss_pred             CCCCHHHHhhccHHHhcC
Confidence            678999999999999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=5e-38  Score=305.88  Aligned_cols=232  Identities=18%  Similarity=0.346  Sum_probs=127.9

Q ss_pred             hCCCCCCCCCChhhhHHHHHHHHhhcCCCh---hhhhhhCCCcccCCcc-CHHHHHHHHHhCCCCCCChhhhhhcCCcee
Q 035716           47 NHPLYPPTQANLSFQIKEKILCLEIMGVDS---GKALSLNPSLHSASLN-SIEGIISFLQSKGILQKDLPRIFGMCPKVL  122 (308)
Q Consensus        47 ~~P~~~~~~~d~~~~~~~~l~~L~~~G~~~---~~il~~~P~lL~~s~~-~l~~~v~~L~~lGls~~~i~~li~~~P~lL  122 (308)
                      ++|.++.  +++.+.+.|+++||.++|++.   ++++.++|.+|..+++ ++.|+++||+++|+++++|.+++.++|++|
T Consensus       111 ~~P~iL~--~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL  188 (487)
T PLN03196        111 EYPLVLG--CSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELL  188 (487)
T ss_pred             cCcHHhh--cCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhh
Confidence            4555555  455555555555555555553   4555556655555554 355666666556665555666665566555


Q ss_pred             eCCcccchhHHHHHhhhhcCCCcchHHHHHhhcCccccccchhchHHHHHHHHHcCCCCc--chhhhhchhhhhcchhhh
Q 035716          123 TANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDL--NALAYQDSVLLVSKVENT  200 (308)
Q Consensus       123 ~~~~e~~l~~~l~fL~~~~G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~--~~ii~~~P~ll~~~~~~~  200 (308)
                      ++++++++.++++||+ ++|++++++++++.++|++|+++++++++|+++||+++|+++.  .+++.++|++++++++++
T Consensus       189 ~~~~e~~l~p~v~fL~-~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~  267 (487)
T PLN03196        189 GFKLEGTMSTSVAYLV-SIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEET  267 (487)
T ss_pred             cCCHHHHHHHHHHHHH-HcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHh
Confidence            5555555555666653 4566655666666666666655555555666666655555432  455555566655555555


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhCCChHH----HhhcCccccccccCchHHHHHH
Q 035716          201 LIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEE----LKEFPQYFAFSLEKRIKPRHMQ  276 (308)
Q Consensus       201 l~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg~~~~~----l~~~P~~L~~sle~ri~pR~~~  276 (308)
                      +++++++|.++|++.+++..++.++|.+++++.++++.++++|+.+++|++.++    +.++|.++++|.+ ++.+|++|
T Consensus       268 lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lSe~-kl~~kvef  346 (487)
T PLN03196        268 VKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRN-VALKHVEF  346 (487)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhcccHH-HHHHHHHH
Confidence            555555555555555555555555555555555444555555554444444433    2234444444432 44444445


Q ss_pred             HHHcCC
Q 035716          277 ALRNGA  282 (308)
Q Consensus       277 L~~~G~  282 (308)
                      |++.|+
T Consensus       347 L~~~Gl  352 (487)
T PLN03196        347 LRGRGF  352 (487)
T ss_pred             HHHcCC
Confidence            444444

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=99.97  E-value=4.1e-31  Score=248.45  Aligned_cols=231  Identities=29%  Similarity=0.561  Sum_probs=186.3

Q ss_pred             HHHhhcCCCh---hhhhhhCCCcccCCcc-CHHHHHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHHHHhhhhcC
Q 035716           67 LCLEIMGVDS---GKALSLNPSLHSASLN-SIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLE  142 (308)
Q Consensus        67 ~~L~~~G~~~---~~il~~~P~lL~~s~~-~l~~~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l~fL~~~~G  142 (308)
                      ++|+++|++.   .++++++|.++.++++ ++.|+++||+++|++..++++++.+||.+|..++++++.|.++||+ ++|
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~-~~~   80 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLK-SIG   80 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHT-TTS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHH-HHc
Confidence            5788899864   7889999999999998 5999999999999999999999999999999998889999999996 899


Q ss_pred             CCcchHHHHHhhcCccccccchhchHHHHHHHHHcCCCCc------------------------------------chhh
Q 035716          143 VPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDL------------------------------------NALA  186 (308)
Q Consensus       143 ~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~------------------------------------~~ii  186 (308)
                      ++++++.+++.++|++|..+.++++.+++.+|+++|+++.                                    .+++
T Consensus        81 ~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~~~~~~~v~~l~~lG~~~~~~~~vi  160 (345)
T PF02536_consen   81 LSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSSEKIKERVEFLKELGFDPEKIGRVI  160 (345)
T ss_dssp             S-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS-HHHHCHHHHHCCCTSSHHHHCCCH
T ss_pred             CCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccchhHHHHHHHHHHHhCCCchhhcccc
Confidence            9999999999999999998877799999999999999741                                    1356


Q ss_pred             hhchhhhhcchhhhHHHHHHHHHHcCCCHHHHHHHHhcCcceeeecccc-------------------------------
Q 035716          187 YQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIEN-------------------------------  235 (308)
Q Consensus       187 ~~~P~ll~~~~~~~l~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~-------------------------------  235 (308)
                      .++|.++..+.++.|+++++||+++|++.+++.+++.++|.++.+|+++                               
T Consensus       161 ~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~  240 (345)
T PF02536_consen  161 AKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSE  240 (345)
T ss_dssp             HHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THHH
T ss_pred             cccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccch
Confidence            6899887777788999999999999999999999999999999999975                               


Q ss_pred             -chhHHHHHHHHHhCCChHH----HhhcCccccccccCchHHHHHHHHH-cCCC----CCchhhcccC-HHHHHHH
Q 035716          236 -NFKPKFEYFNLEIKGKLEE----LKEFPQYFAFSLEKRIKPRHMQALR-NGAR----LSLPVMLKTS-DEEFNEL  300 (308)
Q Consensus       236 -~l~~k~~fL~~~mg~~~~~----l~~~P~~L~~sle~ri~pR~~~L~~-~G~~----~~l~~il~~s-d~~F~~~  300 (308)
                       ++.++++||.+ +|++.++    +.++|++|++|.|+ ++|+++||.+ .|++    ...|.++.+| |++-..|
T Consensus       241 ~~l~~~i~~L~~-lG~s~~ei~~mv~~~P~iL~~s~e~-l~~k~~fl~~~m~~~~~~i~~~P~~l~~sLe~ri~PR  314 (345)
T PF02536_consen  241 EKLKPKIEFLQS-LGFSEEEIAKMVRRFPQILSYSIEK-LKPKFEFLVKEMGLPLEEIVEFPQYLSYSLEKRIKPR  314 (345)
T ss_dssp             HHHHHHHHHHHT-TT--HHHHHHHHHHSGGGGGS-HHH-HHHHHHHHHHCCT--HHHHHHSCHHHCS-HHHHHHHH
T ss_pred             HhHHHHHHHHHH-hcCcHHHHHHHHHhCcchhhcchhh-hhHHHHHHHHHhCcCHHHHhhCCceeEechhhhhhhH
Confidence             58899999996 9999877    46899999999985 9999999975 6764    3567889999 5678878

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.86  E-value=1.2e-21  Score=188.68  Aligned_cols=207  Identities=30%  Similarity=0.477  Sum_probs=173.4

Q ss_pred             HHHHHhhcCCCh---hhhhhhCCCcccCCccCHHHHHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHHHHhhhhc
Q 035716           65 KILCLEIMGVDS---GKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDL  141 (308)
Q Consensus        65 ~l~~L~~~G~~~---~~il~~~P~lL~~s~~~l~~~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l~fL~~~~  141 (308)
                      .++++.++|+..   ...+..+|....... .+...+.++...|+.+..  +++.+.|.+++++.++++++++++|+ .+
T Consensus       201 ~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~-~l~~~~~~i~~~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l~-~~  276 (413)
T KOG1267|consen  201 RLDIRRELGVKPRLLKSLLESQPRPVLLYL-KLKARLPFLLTLGFDPKT--REFVKAPILLSYSSEKTLEPKVEVLK-SL  276 (413)
T ss_pred             cchhhHHhCCCHHHHHHHHhcCccceeeeh-hhhhhhhhHHHhccCCch--hHHHhhhhhhcccccccHHHHHHHHH-Hc
Confidence            666777777664   344556666543322 566677777777776666  77778888888889999999999996 89


Q ss_pred             CCCcchHHHHHhhcCccccccchhchHHHHHHHHHcCCCCcchhhhhchhhhhcchhhhHHHHHHHHHHcCCCHHHHHHH
Q 035716          142 EVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLM  221 (308)
Q Consensus       142 G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~L~~lG~~~~~~ii~~~P~ll~~~~~~~l~~~v~~L~~lG~s~~~i~~~  221 (308)
                      |++.+++..++.++|++|+++.+ ++..++.++.+.  .+ .  +.++|+++.++ +..+.++++|+..+|++..|+..|
T Consensus       277 Gf~~~di~~~~~k~P~~l~~s~~-~~~~~~~~~~~~--~~-~--~~k~p~~l~~s-~~~l~~~ie~l~~~g~~~~q~~~~  349 (413)
T KOG1267|consen  277 GFSREEIWKMVKKCPQILGYSVK-KNLKTTEYLLKN--PK-H--ILKFPQLLRSS-EDKLKPRIEFLLSLGFSDVQILEM  349 (413)
T ss_pred             CCCHHHHHHHHHhCchheEeehh-hhhHHHHHHHhc--ch-h--hhhhhhhhhcc-chhhhhhHHHHHHcCCcHHHHHHH
Confidence            99999999999999999999955 555666666665  22 2  88999999665 678999999999999999999999


Q ss_pred             HhcCcceeeeccccchhHHHHHHHHHhCCChHHHhhcCccccccccCchHHHHHHHHHcCC
Q 035716          222 VLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGA  282 (308)
Q Consensus       222 l~~~P~iL~~s~e~~l~~k~~fL~~~mg~~~~~l~~~P~~L~~sle~ri~pR~~~L~~~G~  282 (308)
                      +.++|+++.+|+++.++++.+|+.+.|+++.++++.+|++++|++|+|+.||+...+++|.
T Consensus       350 ~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~le~ri~pr~~~~~~~~~  410 (413)
T KOG1267|consen  350 VKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPAFFGYSLEKRIRPRFNVIKKLGV  410 (413)
T ss_pred             HhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccchhhccchhhcchhHHHHHHHHhc
Confidence            9999999999998788999999999999999999999999999999999999999888764

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.77  E-value=2.7e-18  Score=165.43  Aligned_cols=212  Identities=25%  Similarity=0.402  Sum_probs=151.1

Q ss_pred             HHHHHHHHhhcCCCh---hhhhhhCCCcccCCccC-HHHHHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHHHHh
Q 035716           62 IKEKILCLEIMGVDS---GKALSLNPSLHSASLNS-IEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFL  137 (308)
Q Consensus        62 ~~~~l~~L~~~G~~~---~~il~~~P~lL~~s~~~-l~~~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l~fL  137 (308)
                      ....+++|++.|++.   ..++..+|.++..+.++ +.++..+|.+.|++..++.+++...|.+|..+.+.++.+.++|+
T Consensus        91 p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~~~l  170 (413)
T KOG1267|consen   91 PSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFIEFL  170 (413)
T ss_pred             cHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHHHHh
Confidence            356788999999985   67888899999888875 88888899999999999999999988888877666788888888


Q ss_pred             hhhcC--CCcchHHHHHhhcC---------------------------------ccccccchhchHHHHHHHHHcCCCCc
Q 035716          138 SHDLE--VPEHDFRKVINKCP---------------------------------RLLTSSARDQLKPALFYLQRLGFKDL  182 (308)
Q Consensus       138 ~~~~G--~~~~~i~~li~~~P---------------------------------~lL~~~~~~~l~~~v~~L~~lG~~~~  182 (308)
                      + +++  .....+.++....|                                 +......  .+...+.++..+|+++.
T Consensus       171 ~-~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i~~~g~~p~  247 (413)
T KOG1267|consen  171 K-SIPPELLSSVVERLLTPVPSFLLNENSVERLDIRRELGVKPRLLKSLLESQPRPVLLYL--KLKARLPFLLTLGFDPK  247 (413)
T ss_pred             h-ccchhhhhhHHHHhccccccccccccccccchhhHHhCCCHHHHHHHHhcCccceeeeh--hhhhhhhhHHHhccCCc
Confidence            5 553  44444444444443                                 3332221  34444455555555554


Q ss_pred             chhhhhchhhhhcchhhhHHHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhCCChHHHhhcCccc
Q 035716          183 NALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYF  262 (308)
Q Consensus       183 ~~ii~~~P~ll~~~~~~~l~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg~~~~~l~~~P~~L  262 (308)
                      .+++.+.|.++.++.++++++++++|+++||+.+||..|+.++|++|++|.+ ++..+++|+.+.    .+++.++|+++
T Consensus       248 ~~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s~~-~~~~~~~~~~~~----~~~~~k~p~~l  322 (413)
T KOG1267|consen  248 TREFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYSVK-KNLKTTEYLLKN----PKHILKFPQLL  322 (413)
T ss_pred             hhHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEeehh-hhhHHHHHHHhc----chhhhhhhhhh
Confidence            5566678888888889999999999999999999999999999999999996 555555555543    22244555555


Q ss_pred             cccccCchHHHHHHHHHcCC
Q 035716          263 AFSLEKRIKPRHMQALRNGA  282 (308)
Q Consensus       263 ~~sle~ri~pR~~~L~~~G~  282 (308)
                      .++. ..+.+|++++...|.
T Consensus       323 ~~s~-~~l~~~ie~l~~~g~  341 (413)
T KOG1267|consen  323 RSSE-DKLKPRIEFLLSLGF  341 (413)
T ss_pred             hccc-hhhhhhHHHHHHcCC
Confidence            3332 345555555555443

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.17  E-value=0.00024  Score=41.78  Aligned_cols=30  Identities=23%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             HHHhcCcceeeeccccchhHHHHHHHHHhCCC
Q 035716          220 LMVLRCPGLFTFSIENNFKPKFEYFNLEIKGK  251 (308)
Q Consensus       220 ~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg~~  251 (308)
                      +++.++|.+|+++. ++|+++++||. ++|++
T Consensus         2 ~~~~~~P~il~~~~-~~l~~~~~~l~-~~g~~   31 (31)
T smart00733        2 KILKKFPQILGYSE-KKLKPKVEFLK-ELGFS   31 (31)
T ss_pred             chhhhCcCcccccH-HHhhHHHHHHH-HcCCC
Confidence            35667777777774 47777777777 57653

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=97.08  E-value=0.00038  Score=40.84  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=8.8

Q ss_pred             hhcCCceeeCCcccchhHHHHHh
Q 035716          115 FGMCPKVLTANIKTDLEPVFNFL  137 (308)
Q Consensus       115 i~~~P~lL~~~~e~~l~~~l~fL  137 (308)
                      +.++|.+|+++ ++++.++++||
T Consensus         4 ~~~~P~il~~~-~~~l~~~~~~l   25 (31)
T smart00733        4 LKKFPQILGYS-EKKLKPKVEFL   25 (31)
T ss_pred             hhhCcCccccc-HHHhhHHHHHH
Confidence            33444444444 22344444444

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=93.60  E-value=0.13  Score=48.39  Aligned_cols=235  Identities=15%  Similarity=0.147  Sum_probs=129.6

Q ss_pred             cccc-ccchhhhhhCCCCCCCCC---------ChhhhHHHHHHHHhh-cCCChhhhhhhCCCcccCCccC--HHHHHHHH
Q 035716           35 IHLS-TKPKSLLQNHPLYPPTQA---------NLSFQIKEKILCLEI-MGVDSGKALSLNPSLHSASLNS--IEGIISFL  101 (308)
Q Consensus        35 ~~~~-~~~~~l~~~~P~~~~~~~---------d~~~~~~~~l~~L~~-~G~~~~~il~~~P~lL~~s~~~--l~~~v~~L  101 (308)
                      .++. .++...+++||.+.....         ..+.++...++-=.. ..-....++.+--.+|-++.++  .-.+++.+
T Consensus        47 L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l  126 (335)
T PF11955_consen   47 LGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHL  126 (335)
T ss_pred             cCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHH
Confidence            3443 667889999998776421         112222221111111 1111234555555567777763  45677777


Q ss_pred             H-hCCCCCCChhhhhhcCCceeeCCc---ccchhHHHHHhhhhcCCCcchHHHHH-------------hhcCccc--ccc
Q 035716          102 Q-SKGILQKDLPRIFGMCPKVLTANI---KTDLEPVFNFLSHDLEVPEHDFRKVI-------------NKCPRLL--TSS  162 (308)
Q Consensus       102 ~-~lGls~~~i~~li~~~P~lL~~~~---e~~l~~~l~fL~~~~G~~~~~i~~li-------------~~~P~lL--~~~  162 (308)
                      + ++|++.+=...++.+||..+..--   ......-+.+= .++.++.-+-....             -.+|--+  ++.
T Consensus       127 ~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd-~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~  205 (335)
T PF11955_consen  127 RRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWD-PELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFR  205 (335)
T ss_pred             HHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecC-CccCcCccchhhhhccccccccccCCceeeeecCCCCcc
Confidence            7 599999999999999999876532   00111111111 23344333322221             0122111  234


Q ss_pred             chhchHHHHHHHHHcCCCC----------c-----chhhhhchhhhhcchhhh-HHHHHHHH-HHcCCCHHHHHHHHhcC
Q 035716          163 ARDQLKPALFYLQRLGFKD----------L-----NALAYQDSVLLVSKVENT-LIPKLKYL-ESIGFSKDEAVLMVLRC  225 (308)
Q Consensus       163 ~~~~l~~~v~~L~~lG~~~----------~-----~~ii~~~P~ll~~~~~~~-l~~~v~~L-~~lG~s~~~i~~~l~~~  225 (308)
                      +.++.+..++-++++-+..          .     .+.+.---.+|...+++. ...++..| +++|++ +.+..++.+|
T Consensus       206 l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp-~k~~~~l~rH  284 (335)
T PF11955_consen  206 LKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLP-QKFRRLLLRH  284 (335)
T ss_pred             ccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCc-HHHHHHHHhC
Confidence            4567777777787764421          0     123333344554444433 35567777 489999 5788999999


Q ss_pred             cceeeeccccchhHHHHHHHHHhCCChHHHhhcCccccccccCchHHHHHHHHHcC
Q 035716          226 PGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNG  281 (308)
Q Consensus       226 P~iL~~s~e~~l~~k~~fL~~~mg~~~~~l~~~P~~L~~sle~ri~pR~~~L~~~G  281 (308)
                      |.|+..|.  +-+.-.-||++....+ +-|.++|.+       .++-|+.-|...|
T Consensus       285 PgIFYvS~--kg~~~TVfLrEAY~~~-~Liek~Pl~-------~~r~k~~~Lm~~~  330 (335)
T PF11955_consen  285 PGIFYVSL--KGKRHTVFLREAYDGG-ELIEKHPLV-------VIREKFLELMQEG  330 (335)
T ss_pred             CCeEEEec--cCCceEEEEeeccCCC-CCCCCCchH-------HHHHHHHHHHhhc
Confidence            99999997  4555556666544433 234555553       4555666666555

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	308
3m66_A	270	Crystal Structure Of Human Mitochondrial Transcript		3e-05
3opg_A	298	Crystal Structure Of Human Mitochondrial Transcript		3e-05

>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 270

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 42/238 (17%)
Query: 43  SLLQNHPLYPPTQANLSFQ--IKEKILCLEIMGVDS---GKALSLNPSLHSASLNSIEGI 97
           S ++ HP        L F+  IK+ +L L+ +G++    G  L+ N ++ S  L +++  
Sbjct: 20  SKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTR 79
Query: 98  ISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPR 157
           +++L SK   + D+ ++    P +L  +++  L+    F   +LE+     R ++ + PR
Sbjct: 80  VAYLHSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPR 138
Query: 158 LLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDE 217
           LLT S    L+P                            EN  + +L+    +GF  +E
Sbjct: 139 LLTGS----LEPV--------------------------KENMKVYRLE----LGFKHNE 164
Query: 218 AVLMVLRCPGLFTFSIENNFKPKFEYFNXXXXXXXXXXXXFPQYFAFSLEKRIKPRHM 275
              M+ R P + T + +      F++ +            FPQ F   L K +K RH+
Sbjct: 165 IQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFK-VKERHL 220

>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 42/238 (17%)
Query: 43  SLLQNHPLYPPTQANLSFQ--IKEKILCLEIMGVDS---GKALSLNPSLHSASLNSIEGI 97
           S ++ HP        L F+  IK+ +L L+ +G++    G  L+ N ++ S  L +++  
Sbjct: 48  SKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTR 107
Query: 98  ISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPR 157
           +++L SK   + D+ ++    P +L  +++  L+    F   +LE+     R ++ + PR
Sbjct: 108 VAYLHSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPR 166
Query: 158 LLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSKDE 217
           LLT S    L+P                            EN  + +L+    +GF  +E
Sbjct: 167 LLTGS----LEPV--------------------------KENMKVYRLE----LGFKHNE 192
Query: 218 AVLMVLRCPGLFTFSIENNFKPKFEYFNXXXXXXXXXXXXFPQYFAFSLEKRIKPRHM 275
              M+ R P + T + +      F++ +            FPQ F   L K +K RH+
Sbjct: 193 IQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFK-VKERHL 248

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	308
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-37
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-15
3mva_O	343	Transcription termination factor, mitochondrial; a	7e-28
3mva_O	343	Transcription termination factor, mitochondrial; a	4e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  133 bits (335), Expect = 2e-37
 Identities = 53/271 (19%), Positives = 105/271 (38%), Gaps = 51/271 (18%)

Query: 41  PKSLLQNHPLYPPT--QANLSFQIKEKILCLEIMGVDS---GKALSLNPSLHSASLNSIE 95
             S ++ HP       + +    IK+ +L L+ +G++    G  L+ N ++ S  L +++
Sbjct: 18  DLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLK 77

Query: 96  GIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKC 155
             +++L SK   + D+ ++    P +L  +++  L+    F   +LE+     R ++ + 
Sbjct: 78  TRVAYLHSKNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRL 136

Query: 156 PRLLTSSARDQLKPALFYLQRLGFKDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFSK 215
           PRLLT S     +                                      Y   +GF  
Sbjct: 137 PRLLTGSLEPVKE----------------------------------NMKVYRLELGFKH 162

Query: 216 DEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHM 275
           +E   M+ R P + T + +      F++ +  +      + +FPQ F   L  ++K RH+
Sbjct: 163 NEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHL 220

Query: 276 QALRNGAR---------LSLPVMLKTSDEEF 297
                G           +SL  ++   DE F
Sbjct: 221 FLTYLGRAQYDPAKPNYISLDKLVSIPDEIF 251

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score = 74.1 bits (182), Expect = 2e-15
 Identities = 40/183 (21%), Positives = 66/183 (36%), Gaps = 19/183 (10%)

Query: 129 DLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGF--KDLNALA 186
           D       L   L V      K       LL       +K  L +L+ +G     L A  
Sbjct: 4   DHSETLQKLV-LLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFL 62

Query: 187 YQDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNL 246
            ++  +    +EN L  ++ YL S  FSK +   MV + P L  FS+E     +  +F  
Sbjct: 63  TKNHAIFSEDLEN-LKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQK 120

Query: 247 EIKGKLEELKE----FPQYFAFSLEKRIKPRHMQALRNGARLSLPVMLKTSDEEFNELIK 302
           E++  +++ ++     P+    SLE   +   +  L  G              E   +I 
Sbjct: 121 ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELG----------FKHNEIQHMIT 170

Query: 303 PKP 305
             P
Sbjct: 171 RIP 173

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  109 bits (274), Expect = 7e-28
 Identities = 48/258 (18%), Positives = 96/258 (37%), Gaps = 24/258 (9%)

Query: 61  QIKEKILCLEIMGV---DSGKALSLNPS--LHSASLNSIEGIISFLQSKGILQKDLPRIF 115
            + ++      +     +    L  +P     S +  ++E  I FL S G+ +K L R+ 
Sbjct: 85  NLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLL 144

Query: 116 GMCPKVLTANIKTDLEPVFNFL-----SHDLEVPEHDFRKVINKCPRLLTSSARDQLKPA 170
              P+  + ++    + +  FL     S     P    RK+I K P +L  S   ++K  
Sbjct: 145 TNAPRTFSNSLD-LNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQST-KRVKAN 202

Query: 171 LFYLQR-LGFKDLNALAY------QDSVLLVSKVENTLIPKLKYLESIGFSKDEAVLMVL 223
           + +L+          L        +   L       +     + L S+G +++E    VL
Sbjct: 203 IEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVL 262

Query: 224 RCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGAR 283
             P +   + +  F  K +   +E    + ++ E P+    S+   +K R  + +  G  
Sbjct: 263 SYPDVIFLAEK-KFNDKIDCL-MEENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCN 319

Query: 284 LSLP--VMLKTSDEEFNE 299
           LS     +L  S + +  
Sbjct: 320 LSTLNITLLSWSKKRYEA 337

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score = 96.6 bits (240), Expect = 4e-23
 Identities = 44/275 (16%), Positives = 96/275 (34%), Gaps = 28/275 (10%)

Query: 48  HPLYPPTQANL---SFQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSK 104
           H L+     N      + ++ +  L  MGVD   A    P +    + + + +  FL SK
Sbjct: 2   HMLFGVKCHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSK 61

Query: 105 GILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPR-LLTSSA 163
           G  ++ +  I    P+ +T   + +L   ++     +   + +   ++ + P     S+ 
Sbjct: 62  GASKEVIASIISRYPRAITRTPE-NLSKRWDLW-RKIVTSDLEIVNILERSPESFFRSNN 119

Query: 164 RDQLKPALFYLQRLGF--KDLNALAYQDSVLLVSKVENTLIPKLKYLESIGFS------K 215
              L+  + +L  +G   K L  L         + ++      +++L++ G S       
Sbjct: 120 NLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLGHNDPA 178

Query: 216 DEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEEL-----KEFPQYFAFSLEKRI 270
           D    ++ + P +   S +   K   E+         EEL         +    S +   
Sbjct: 179 DFVRKIIFKNPFILIQSTK-RVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYAR 237

Query: 271 KPRHMQALRNGARLSLPVMLKTSDEEFNELIKPKP 305
             R    ++          L  ++EE  + +   P
Sbjct: 238 --RSYANIKEKLF-----SLGCTEEEVQKFVLSYP 265

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 5e-11
 Identities = 72/366 (19%), Positives = 124/366 (33%), Gaps = 93/366 (25%)

Query: 9   LHSLCISSQTPSPTSSSSPSNSQQLNIHLSTKPKSLLQNHPLYP-----------PTQAN 57
           L  L      P+ TS S  S++ +L IH        L     Y                N
Sbjct: 202 LQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 58  LSFQIKEKILCL-------EIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKD 110
            +F +  KIL         + +   +   +SL+   HS +L   E     L+      +D
Sbjct: 261 -AFNLSCKILLTTRFKQVTDFLSAATTTHISLDH--HSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 111 LPRIFGMC---PKVLT---ANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSAR 164
           LPR   +    P+ L+    +I+  L    N+   + +        +I     L      
Sbjct: 318 LPRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCD----KLTTIIESS--L------ 363

Query: 165 DQLKPALF--YLQRLG-F-KDLN-----------ALAYQDSVLLVSKVENTL-------- 201
           + L+PA +     RL  F    +            +   D +++V+K+            
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 202 ----IPKLKYLESIGFSKDEAVL---MVLRCPGLFTFSIENNFKPK-FEYF------NLE 247
               IP + YLE     ++E  L   +V       TF  ++   P   +YF      +L+
Sbjct: 424 STISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 248 IKGKLEELKEFPQ-YFAFS-LEKRIKPRHMQALRNGARLSLPVM--LKT-------SDEE 296
                E +  F   +  F  LE++I  RH     N +   L  +  LK        +D +
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKI--RHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 297 FNELIK 302
           +  L+ 
Sbjct: 541 YERLVN 546

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	308
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	99.96
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.92
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.46
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	98.44
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	85.6

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=1.1e-45  Score=346.09  Aligned_cols=281  Identities=15%  Similarity=0.260  Sum_probs=232.1

Q ss_pred             cccccCCCCCCCCCCCCCcccccccccccchhhhhhCCCCCCCCCChhhhHHHHHHHHhhcCCCh---hhhhhhCCCccc
Q 035716           12 LCISSQTPSPTSSSSPSNSQQLNIHLSTKPKSLLQNHPLYPPTQANLSFQIKEKILCLEIMGVDS---GKALSLNPSLHS   88 (308)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~P~~~~~~~d~~~~~~~~l~~L~~~G~~~---~~il~~~P~lL~   88 (308)
                      .|.|.+|.+.-   +.+--+.+ ..++..++.+++++|.++.  .+. +..+++++||.++|++.   ++++.++|.+|.
T Consensus         8 ~~~~~~~~~~~---~~~~v~~L-~s~Gl~~~~~~~~~p~l~~--~s~-~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~   80 (343)
T 3mva_O            8 KCHNTDSEPLK---NEDLLKNL-LTMGVDIDMARKRQPGVFH--RMI-TNEQDLKMFLLSKGASKEVIASIISRYPRAIT   80 (343)
T ss_dssp             ---------------CCHHHHH-HHHTCCHHHHHHHCGGGGG--CSC-CCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGG
T ss_pred             ccCCCCCCccc---cHHHHHHH-HHcCCCHHHHHHhCchhhc--cCc-ccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHh
Confidence            37776665321   12223334 4566678899999998876  444 46789999999999985   789999999999


Q ss_pred             CCccCHHHHHHHHHhCCCCCCChhhhhhcCCce-eeCCcccchhHHHHHhhhhcCCCcchHHHHHhhcCccccccchhch
Q 035716           89 ASLNSIEGIISFLQSKGILQKDLPRIFGMCPKV-LTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQL  167 (308)
Q Consensus        89 ~s~~~l~~~v~~L~~lGls~~~i~~li~~~P~l-L~~~~e~~l~~~l~fL~~~~G~~~~~i~~li~~~P~lL~~~~~~~l  167 (308)
                      ++++++.++++||+++|++++++.+++.++|++ ++.+.++++.|+++||+ ++|++.+++++++.++|++|+.++++ .
T Consensus        81 ~~~~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~-~lGl~~~~i~~ll~~~P~il~~~~e~-~  158 (343)
T 3mva_O           81 RTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLY-SVGLTRKCLCRLLTNAPRTFSNSLDL-N  158 (343)
T ss_dssp             CCHHHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGTSCHHH-H
T ss_pred             CCHHHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHH-HhCCCHHHHHHHHHhCChhheeCHHH-h
Confidence            998899999999999999999999999999994 55543348999999996 89999999999999999999999765 4


Q ss_pred             HHHHHHHHHcCCC------C--cchhhhhchhhhhcchhhhHHHHHHHHH------------------------------
Q 035716          168 KPALFYLQRLGFK------D--LNALAYQDSVLLVSKVENTLIPKLKYLE------------------------------  209 (308)
Q Consensus       168 ~~~v~~L~~lG~~------~--~~~ii~~~P~ll~~~~~~~l~~~v~~L~------------------------------  209 (308)
                      ++++++|+++|++      +  ..+++.++|.++..+ +++++++++||+                              
T Consensus       159 ~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~  237 (343)
T 3mva_O          159 KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYAR  237 (343)
T ss_dssp             HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHH
T ss_pred             hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHH
Confidence            9999999976653      1  256778888888877 566777766665                              


Q ss_pred             -----------HcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhCCChHHHhhcCccccccccCchHHHHHHHH
Q 035716          210 -----------SIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQAL  278 (308)
Q Consensus       210 -----------~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg~~~~~l~~~P~~L~~sle~ri~pR~~~L~  278 (308)
                                 ++||+++|+..|+.++|.+|++|.| +|++|++||.+ ||++.++|+++|++|+||+| ||+|||++|+
T Consensus       238 ~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~  314 (343)
T 3mva_O          238 RSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEK-KFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKELV  314 (343)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHH-HHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHH-HHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHH
Confidence                       4799999999999999999999997 79999999999 99999999999999999999 9999999999


Q ss_pred             HcCCCCCch--hhcccCHHHHHHHhccCC
Q 035716          279 RNGARLSLP--VMLKTSDEEFNELIKPKP  305 (308)
Q Consensus       279 ~~G~~~~l~--~il~~sd~~F~~~~~~~~  305 (308)
                      ++|++++++  +||++||++|+++|.+.+
T Consensus       315 ~~g~~~~~~~~~~l~~s~~~F~~~~~~~~  343 (343)
T 3mva_O          315 NAGCNLSTLNITLLSWSKKRYEAKLKKLS  343 (343)
T ss_dssp             TTTCCSSSSCGGGGGSCHHHHHHHHHHTC
T ss_pred             HCCCCCCCCcchhhcCCHHHHHHHHhccC
Confidence            999999888  999999999999998753

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=9.7e-45  Score=328.97  Aligned_cols=236  Identities=22%  Similarity=0.340  Sum_probs=216.6

Q ss_pred             HHHHHHHhhcCCChhhhhhhCCCc----ccCCcc-CHHHHHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHHHHh
Q 035716           63 KEKILCLEIMGVDSGKALSLNPSL----HSASLN-SIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFL  137 (308)
Q Consensus        63 ~~~l~~L~~~G~~~~~il~~~P~l----L~~s~~-~l~~~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l~fL  137 (308)
                      .++++||.++|++..++ .++|.+    +.++++ +++++++||+++|+++++|++++.++|.+|++++++ +.|+++||
T Consensus         6 s~~l~~L~~lGv~~~~i-~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L   83 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKI-EKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL   83 (270)
T ss_dssp             HHHHHHHHHTTCCHHHH-TTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHH-hhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence            48999999999999774 566766    999987 799999999999999999999999999999999986 99999999


Q ss_pred             hhhcCCCcchHHHHHhhcCccccccchhchHHHHHHH-HHcCCCCc--chhhhhchhhhhcchhhhHHHHHHHH-HHcCC
Q 035716          138 SHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYL-QRLGFKDL--NALAYQDSVLLVSKVENTLIPKLKYL-ESIGF  213 (308)
Q Consensus       138 ~~~~G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~L-~~lG~~~~--~~ii~~~P~ll~~~~~~~l~~~v~~L-~~lG~  213 (308)
                      + ++|++++++++++.++|++|+.+++ +++++++|| +++|+++.  .+++.++|.++..+.+ .++++++++ +++||
T Consensus        84 ~-~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~  160 (270)
T 3m66_A           84 H-SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGF  160 (270)
T ss_dssp             H-HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCC
T ss_pred             H-HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCC
Confidence            6 8999999999999999999999977 699999999 47999864  6889999999999975 699999987 79999


Q ss_pred             CHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhCCChHHHhhcCccccccccCchHHHHHHHHHc---CC------CC
Q 035716          214 SKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRN---GA------RL  284 (308)
Q Consensus       214 s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg~~~~~l~~~P~~L~~sle~ri~pR~~~L~~~---G~------~~  284 (308)
                      +.+|+..|+.++|.+|++|.+ +|++|++||.++||++.++|+++|++|+||+| ||+|||.||+..   |+      .+
T Consensus       161 s~~ei~~~v~~~P~il~~s~~-~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~  238 (270)
T 3m66_A          161 KHNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYI  238 (270)
T ss_dssp             CHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCC
T ss_pred             CHHHHHHHHHhCChhheecHH-HHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCC
Confidence            999999999999999999995 99999999999999999999999999999999 999999998874   44      25


Q ss_pred             CchhhcccCHHHHHHHhccCC
Q 035716          285 SLPVMLKTSDEEFNELIKPKP  305 (308)
Q Consensus       285 ~l~~il~~sd~~F~~~~~~~~  305 (308)
                      ++.+++.+||++|+++|++.+
T Consensus       239 ~L~~~l~~sd~~F~~~~~~~~  259 (270)
T 3m66_A          239 SLDKLVSIPDEIFCEEIAKAS  259 (270)
T ss_dssp             CHHHHHHSCHHHHHHHTTCSC
T ss_pred             CHHHHhcCCHHHHHHHHhcCC
Confidence            677899999999999999764

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=2.8e-36  Score=279.58  Aligned_cols=203  Identities=20%  Similarity=0.324  Sum_probs=186.5

Q ss_pred             CHHHHHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHHHHhhhhcCCCcchHHHHHhhcCccccccchhchHHHHH
Q 035716           93 SIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALF  172 (308)
Q Consensus        93 ~l~~~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l~fL~~~~G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~  172 (308)
                      +++..+..|.++|+++++|++++..+|.++..    ++.+++.||. .+|++.++|+++|.++|++|++++ ++|+++++
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~-~LGls~e~V~kiL~k~P~lL~~s~-e~L~~~l~  118 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFI-LLGLNPEPVCVVLKKSPQLLKLPI-MQMRKRSS  118 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGGSCH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHH-HcCCCHHHHHHHHHhChhhccCCH-HHHHHHHH
Confidence            47889999999999999999999999998743    5888999996 899999999999999999999996 47999999


Q ss_pred             HHHHcCCCCc--chhhhhchhhhhcchhhhHHHHHHHH-HHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhC
Q 035716          173 YLQRLGFKDL--NALAYQDSVLLVSKVENTLIPKLKYL-ESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIK  249 (308)
Q Consensus       173 ~L~~lG~~~~--~~ii~~~P~ll~~~~~~~l~~~v~~L-~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg  249 (308)
                      ||+++|++..  .+++.++|++++++.+ .+..++.+| .++||+.++|..||.++|.||++|.+ +|++|++||.++||
T Consensus       119 fL~~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e-~L~~K~efLv~~Mg  196 (335)
T 4fp9_B          119 YLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLG-QLEYKFQYAYFRMG  196 (335)
T ss_dssp             HHHHTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTTC
T ss_pred             HHHHcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHH-HHHHHHHHHHHHhC
Confidence            9999999753  6889999999999975 699999999 58999999999999999999999996 89999999999999


Q ss_pred             CChHHHhhcCccccccccCchHHHHHHHHHcCC-------------CCCchhhcccCHHHHHHHhccCC
Q 035716          250 GKLEELKEFPQYFAFSLEKRIKPRHMQALRNGA-------------RLSLPVMLKTSDEEFNELIKPKP  305 (308)
Q Consensus       250 ~~~~~l~~~P~~L~~sle~ri~pR~~~L~~~G~-------------~~~l~~il~~sd~~F~~~~~~~~  305 (308)
                      ++.++|++ |.+|+||++ ||+|||.||++.|+             +++|..|+..||++|+.++++.+
T Consensus       197 l~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s  263 (335)
T 4fp9_B          197 IKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTS  263 (335)
T ss_dssp             CCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCC
T ss_pred             CCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcC
Confidence            99999997 999999998 99999999999997             24688999999999999999764

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=2.1e-34  Score=269.56  Aligned_cols=238  Identities=16%  Similarity=0.283  Sum_probs=197.8

Q ss_pred             hhHHHHHHHHhhcCCChhhhhhhCCCcccCCccCHHHHHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHHHHhhh
Q 035716           60 FQIKEKILCLEIMGVDSGKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSH  139 (308)
Q Consensus        60 ~~~~~~l~~L~~~G~~~~~il~~~P~lL~~s~~~l~~~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l~fL~~  139 (308)
                      .+...+++||.++|++.+++++++|.++..++++++++++||+++|+++++|++++.++|.+|+++++ ++.|+++||+ 
T Consensus        17 ~~~~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~-~l~p~l~fL~-   94 (343)
T 3mva_O           17 LKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE-NLSKRWDLWR-   94 (343)
T ss_dssp             ---CCHHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH-HHHHHHHHHT-
T ss_pred             cccHHHHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH-HHHHHHHHHH-
Confidence            34567999999999999999999999999999999999999999999999999999999999999975 7999999996 


Q ss_pred             hcCCCcchHHHHHhhcCc-cccccchhchHHHHHHHHHcCCCCc--chhhhhchhhhhcchhhhHHHHHHHHHHcCCC--
Q 035716          140 DLEVPEHDFRKVINKCPR-LLTSSARDQLKPALFYLQRLGFKDL--NALAYQDSVLLVSKVENTLIPKLKYLESIGFS--  214 (308)
Q Consensus       140 ~~G~~~~~i~~li~~~P~-lL~~~~~~~l~~~v~~L~~lG~~~~--~~ii~~~P~ll~~~~~~~l~~~v~~L~~lG~s--  214 (308)
                      ++|++++++++++.++|+ +++...+++++++++||+++|+++.  .+++.++|++++.+.+. .++++++|+++|++  
T Consensus        95 ~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~L~~lgv~~g  173 (343)
T 3mva_O           95 KIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQAAGLSLG  173 (343)
T ss_dssp             TTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHHHHHHHHHTT
T ss_pred             HcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHHHHHhCCCcC
Confidence            899999999999999999 4555533589999999999999854  78999999999999875 59999999866653  


Q ss_pred             ----HHHHHHHHhcCcceeeeccccchhHHHHHHHHHh----------------------------------------CC
Q 035716          215 ----KDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEI----------------------------------------KG  250 (308)
Q Consensus       215 ----~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~m----------------------------------------g~  250 (308)
                          .+.|.+|+.++|.+|++|. ++++++++||.+++                                        |+
T Consensus       174 ~~~p~~~I~~il~~~P~iL~~s~-~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~  252 (343)
T 3mva_O          174 HNDPADFVRKIIFKNPFILIQST-KRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGC  252 (343)
T ss_dssp             CSCHHHHHHHHHHHCGGGGGSCH-HHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTC
T ss_pred             CCcHHHHHHHHHHhCChHhcCCH-HHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCC
Confidence                7899999999999999995 59999999999634                                        55


Q ss_pred             ChHH----HhhcCccccccccCchHHHHHHHHHcCCCC----CchhhcccCHHHHHHHhc
Q 035716          251 KLEE----LKEFPQYFAFSLEKRIKPRHMQALRNGARL----SLPVMLKTSDEEFNELIK  302 (308)
Q Consensus       251 ~~~~----l~~~P~~L~~sle~ri~pR~~~L~~~G~~~----~l~~il~~sd~~F~~~~~  302 (308)
                      +.++    +.++|.+|.+|.| +|+|+++||.+.|+..    ..+.++.+|-++-..|+.
T Consensus       253 s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl~~mg~~~~~i~~~P~~l~~sleri~~R~~  311 (343)
T 3mva_O          253 TEEEVQKFVLSYPDVIFLAEK-KFNDKIDCLMEENISISQIIENPRVLDSSISTLKSRIK  311 (343)
T ss_dssp             CHHHHHHHHHTCGGGGGSCHH-HHHHHHHHHHTTTCCHHHHHHSGGGGGSCHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCchhcccHH-HHHHHHHHHHHcCCCHHHHHhCCHHHhcCHHHHHHHHH
Confidence            5444    3567777777766 3777777776666632    345666777666666654

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=99.96  E-value=2.3e-30  Score=234.43  Aligned_cols=202  Identities=18%  Similarity=0.264  Sum_probs=184.7

Q ss_pred             HHHHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHHHHhhhhcCCCcchHHHHHhhcCccccccchhchHHHHHHH
Q 035716           95 EGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYL  174 (308)
Q Consensus        95 ~~~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l~fL~~~~G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~L  174 (308)
                      .+++++|.++|++.++|.+....+|.+|++++++++.|+++||+ ++|++++++++++.++|++|+.++++ ++++++||
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~-~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L   83 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLK-DVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYL   83 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHH-HHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHH-HcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHH
Confidence            57899999999999999888777888899999989999999996 89999999999999999999999887 99999999


Q ss_pred             HHcCCCCc--chhhhhchhhhhcchhhhHHHHHHHH-HHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhCCC
Q 035716          175 QRLGFKDL--NALAYQDSVLLVSKVENTLIPKLKYL-ESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGK  251 (308)
Q Consensus       175 ~~lG~~~~--~~ii~~~P~ll~~~~~~~l~~~v~~L-~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg~~  251 (308)
                      +++|+++.  .+++.++|+++..+.+ +++++++|| +++|++.+++.+++.++|.++++|.| +++++++|+..++|++
T Consensus        84 ~~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s  161 (270)
T 3m66_A           84 HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFK  161 (270)
T ss_dssp             HHTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCC
T ss_pred             HHcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCC
Confidence            99999754  6889999999999987 599999999 58999999999999999999999997 8999999988889999


Q ss_pred             hHH----HhhcCccccccccCchHHHHHHHH-HcCCCC----CchhhcccCHHHHHHHh
Q 035716          252 LEE----LKEFPQYFAFSLEKRIKPRHMQAL-RNGARL----SLPVMLKTSDEEFNELI  301 (308)
Q Consensus       252 ~~~----l~~~P~~L~~sle~ri~pR~~~L~-~~G~~~----~l~~il~~sd~~F~~~~  301 (308)
                      .++    +.++|.+|++|.+ +|+|+++||. +.|++.    ..+.++.+|.++...|+
T Consensus       162 ~~ei~~~v~~~P~il~~s~~-~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sleri~pR~  219 (270)
T 3m66_A          162 HNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKERH  219 (270)
T ss_dssp             HHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHhCChhheecHH-HHHHHHHHHHHHhCCCHHHHHhCchHhhCCHHHHHHHH
Confidence            886    4689999999995 9999999995 589853    56899999988888886

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.92  E-value=1.7e-25  Score=207.22  Aligned_cols=177  Identities=17%  Similarity=0.303  Sum_probs=160.9

Q ss_pred             hhHHHHHHHHhhcCCCh---hhhhhhCCCcccCCccCHHHHHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHHHH
Q 035716           60 FQIKEKILCLEIMGVDS---GKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNF  136 (308)
Q Consensus        60 ~~~~~~l~~L~~~G~~~---~~il~~~P~lL~~s~~~l~~~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l~f  136 (308)
                      .+++..+..|.++||++   ++++.++|.++.   +++.+++.||.++|++.++|.++|.++|++|+++++ +|+++++|
T Consensus        44 ~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~---~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           44 LELERVMSSLLDMGFSNAHINELLSVRRGASL---QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH---HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             ccHHHHHHHHHHCCCCHHHHHHHHHhCcccch---hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            46789999999999996   789999999863   457899999999999999999999999999999997 69999999


Q ss_pred             hhhhcCCCcchHHHHHhhcCccccccchhchHHHHHHHH-HcCCCCc--chhhhhchhhhhcchhhhHHHHHHHHH-HcC
Q 035716          137 LSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQ-RLGFKDL--NALAYQDSVLLVSKVENTLIPKLKYLE-SIG  212 (308)
Q Consensus       137 L~~~~G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~L~-~lG~~~~--~~ii~~~P~ll~~~~~~~l~~~v~~L~-~lG  212 (308)
                      |+ ++|++.+++++++.++|++|+++.+ +++.++.+|. ++|+++.  ..++.++|.+|.++. +.|++|++||. +||
T Consensus       120 L~-~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~-e~L~~K~efLv~~Mg  196 (335)
T 4fp9_B          120 LQ-KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMG  196 (335)
T ss_dssp             HH-HTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTTC
T ss_pred             HH-HcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH-HHHHHHHHHHHHHhC
Confidence            96 7999999999999999999999955 7999999987 5999864  789999999999995 57999999995 899


Q ss_pred             CCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhCC
Q 035716          213 FSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKG  250 (308)
Q Consensus       213 ~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg~  250 (308)
                      ++.++|.    + |.+|+||.+ +|++|+.||.. +|.
T Consensus       197 l~~~eIv----k-P~~l~ySLe-RIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          197 IKHPDIV----K-SEYLQYSLT-KIKQRHIYLER-LGR  227 (335)
T ss_dssp             CCHHHHH----H-TTGGGSCHH-HHHHHHHHHHH-HTS
T ss_pred             CCHHHcc----c-cchhhccHH-HHHHHHHHHHH-cCC
Confidence            9999985    3 999999998 99999999996 886

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.46  E-value=2e-12  Score=103.91  Aligned_cols=161  Identities=23%  Similarity=0.402  Sum_probs=141.7

Q ss_pred             HHhhhhcCCCcchHHHHHhhcCccccccchhchHHHHHHHHHcCCCC--cchhhhhchhhhhcchhhhHHHHHHHHH-Hc
Q 035716          135 NFLSHDLEVPEHDFRKVINKCPRLLTSSARDQLKPALFYLQRLGFKD--LNALAYQDSVLLVSKVENTLIPKLKYLE-SI  211 (308)
Q Consensus       135 ~fL~~~~G~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~L~~lG~~~--~~~ii~~~P~ll~~~~~~~l~~~v~~L~-~l  211 (308)
                      +|+  -+|++++-++-++.+.|++|..++- .++.+-.+|+.+|+.+  ..+++.-+|.+++..- ..+...+..|+ .+
T Consensus        39 efi--llglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrq-qdindtvrllkekc  114 (239)
T 4fzv_B           39 EFI--LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKEKC  114 (239)
T ss_dssp             HHH--HHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-HHHHHHHHHHHHHS
T ss_pred             HHH--hhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-hhHhHHHHHHHHhH
Confidence            454  4899999999999999999999965 6899999999988764  4688899999999874 46999999995 78


Q ss_pred             CCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHhCCChHHHhhcCccccccccCchHHHHHHHHHcCC---------
Q 035716          212 GFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEIKGKLEELKEFPQYFAFSLEKRIKPRHMQALRNGA---------  282 (308)
Q Consensus       212 G~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~mg~~~~~l~~~P~~L~~sle~ri~pR~~~L~~~G~---------  282 (308)
                      -|+.+++.+++..||.+|.-+.. .+.-|++|..-.||+..-+|++ ..+|.||+. +|+.|+-+|.+.|.         
T Consensus       115 lftvqqvtkilhscpsvlredlg-qleykfqyayfrmgikhpdivk-seylqyslt-kikqrhiylerlgryqtpdkkgq  191 (239)
T 4fzv_B          115 LFTVQQVTKILHSCPSVLREDLG-QLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQ  191 (239)
T ss_dssp             CCCHHHHHHHHHHCGGGGTSCTT-HHHHHHHHHHHTSCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSC
T ss_pred             HhhHHHHHHHHHhCcHHHHHHHh-hhhhhHhHHHHHccCCCcchhH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCC
Confidence            89999999999999999999995 9999999999899999989987 689999995 89999999999886         


Q ss_pred             ----CCCchhhcccCHHHHHHHhc
Q 035716          283 ----RLSLPVMLKTSDEEFNELIK  302 (308)
Q Consensus       283 ----~~~l~~il~~sd~~F~~~~~  302 (308)
                          ++-+.+|+..||.+|..+-+
T Consensus       192 tqipnpllkdilrvseaeflarta  215 (239)
T 4fzv_B          192 TQIPNPLLKDILRVSEAEFLARTA  215 (239)
T ss_dssp             CSSCCCCHHHHHTSCHHHHHHHTS
T ss_pred             ccCCChHHHHHHHHhHHHHHHHHh
Confidence                23467999999999998865

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=98.44  E-value=1e-06  Score=70.82  Aligned_cols=106  Identities=22%  Similarity=0.414  Sum_probs=54.9

Q ss_pred             HHHHhhcCCCh---hhhhhhCCCcccCCccCHHHHHHHHHhCCCCCCChhhhhhcCCceeeCCcccchhHHHHHhhhhcC
Q 035716           66 ILCLEIMGVDS---GKALSLNPSLHSASLNSIEGIISFLQSKGILQKDLPRIFGMCPKVLTANIKTDLEPVFNFLSHDLE  142 (308)
Q Consensus        66 l~~L~~~G~~~---~~il~~~P~lL~~s~~~l~~~v~~L~~lGls~~~i~~li~~~P~lL~~~~e~~l~~~l~fL~~~~G  142 (308)
                      +.-+.-+|+.+   .-++++.|.++....-.++.+-.||+.+|+....+.+++-.||.|++..-. ++...+..|++.+-
T Consensus        37 isefillglnpepvcvvlkkspqllklpimqmrkrssylqklglgegklkrvlyccpeiftmrqq-dindtvrllkekcl  115 (239)
T 4fzv_B           37 ISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCL  115 (239)
T ss_dssp             HHHHHHHCCCTTHHHHHHHSCGGGGTSCHHHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHH-HHHHHHHHHHHHSC
T ss_pred             HHHHHhhcCCCCceEEEecCCHHHhcChHHHHHHHHHHHHHhCCCccchhhheecCcHHHHHHHh-hHhHHHHHHHHhHH
Confidence            33344455543   334555555555544455555555555555555555555555555555432 45555555555555


Q ss_pred             CCcchHHHHHhhcCccccccchhchHHHHHH
Q 035716          143 VPEHDFRKVINKCPRLLTSSARDQLKPALFY  173 (308)
Q Consensus       143 ~~~~~i~~li~~~P~lL~~~~~~~l~~~v~~  173 (308)
                      |+..++.+++..||.+|..++. .+.-++.+
T Consensus       116 ftvqqvtkilhscpsvlredlg-qleykfqy  145 (239)
T 4fzv_B          116 FTVQQVTKILHSCPSVLREDLG-QLEYKFQY  145 (239)
T ss_dssp             CCHHHHHHHHHHCGGGGTSCTT-HHHHHHHH
T ss_pred             hhHHHHHHHHHhCcHHHHHHHh-hhhhhHhH
Confidence            5555555555555555555432 34444443

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=85.60  E-value=1.8  Score=39.94  Aligned_cols=39  Identities=15%  Similarity=0.307  Sum_probs=27.8

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHhcCcceeeeccccchhHHHHHHHHHh
Q 035716          202 IPKLKYLESIGFSKDEAVLMVLRCPGLFTFSIENNFKPKFEYFNLEI  248 (308)
Q Consensus       202 ~~~v~~L~~lG~s~~~i~~~l~~~P~iL~~s~e~~l~~k~~fL~~~m  248 (308)
                      +..|+-|..|||+++.+.+.+..|        +++...-.+||...+
T Consensus       326 ~eaI~rL~~mGF~~~~a~~al~a~--------~~n~e~A~~~L~~~~  364 (368)
T 1oqy_A          326 KEAIERLKALGFPESLVIQAYFAC--------EKNENLAANFLLSQN  364 (368)
T ss_dssp             HHHHHHHHHHTCCSHHHHHHTSSS--------SSCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHhhCc
Confidence            467888889999998887776655        235666677777543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00