Citrus Sinensis ID: 035725

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80------
Protein Sequence
HDLPDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPITPGKY
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEcccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHcEcHHHHHHHHHHHHHHHHHHHHccccHEcccccccHHHHHHHHHcccEEEEEHHHEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
HDLPDLNKYRIRFIDGVHAVLSVLVFAAVALrdknvlscffptpkhetqevldIVPVGIGLICSLLFVifptrrhgigypitpgky
Flexible Loop (DISEMBL)
HDLPDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIfptrrhgigypitpgky
Low Complexity Region (SEG)
HDLPDLNKYRIRFIDGVHavlsvlvfaavalRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPITPGKY
Disordered region (IsUnstruct)
*****LNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPI*****
Disordered Region (DISOPRED)
****DLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGI**P******
Disordered Region (DISEMBL)
HDLPDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPITPGKY
Disordered Region (DISPRO)
*DLPDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPITP***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
HDLPDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGYPITPGKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
255571014	230	conserved hypothetical protein [Ricinus	0.965	0.360	0.831	4e-34
224119990	233	predicted protein [Populus trichocarpa]	0.965	0.356	0.831	4e-34
297739529	238	unnamed protein product [Vitis vinifera]	0.976	0.352	0.797	5e-33
224129676	230	predicted protein [Populus trichocarpa]	0.941	0.352	0.777	8e-31
297803680	213	hypothetical protein ARALYDRAFT_492419 [	0.930	0.375	0.737	4e-30
15233785	213	uncharacterized protein [Arabidopsis tha	0.930	0.375	0.712	3e-29
15232906	219	uncharacterized protein [Arabidopsis tha	0.930	0.365	0.687	3e-27
297725981	224	Os08g0106501 [Oryza sativa Japonica Grou	0.918	0.352	0.670	7e-26
125559868	224	hypothetical protein OsI_27521 [Oryza sa	0.918	0.352	0.670	7e-26
297828694	219	hypothetical protein ARALYDRAFT_896211 [	0.930	0.365	0.675	1e-25

>gi|255571014|ref|XP_002526458.1| conserved hypothetical protein [Ricinus communis] gi|223534238|gb|EEF35953.1| conserved hypothetical protein [Ricinus communis]

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 77/83 (92%)

Query: 3   LPDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLI 62
           L DL+KY+IRFIDGVH+VLSVLVF A ALRDKNV+SCF+P PKHETQEVL+I PVGIGLI
Sbjct: 148 LKDLSKYKIRFIDGVHSVLSVLVFIAFALRDKNVVSCFYPMPKHETQEVLNIAPVGIGLI 207

Query: 63  CSLLFVIFPTRRHGIGYPITPGK 85
           CSLLFV+FPTRRHGIGYP+T GK
Sbjct: 208 CSLLFVVFPTRRHGIGYPVTAGK 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119990|ref|XP_002331110.1| predicted protein [Populus trichocarpa] gi|222872838|gb|EEF09969.1| predicted protein [Populus trichocarpa]

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 77/83 (92%)

Query: 3   LPDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLI 62
           L DL+K ++RFID VHAVLSVLVF AVALRDKNVLSCF+P PKHETQEVLD++PVGIGLI
Sbjct: 151 LSDLSKLKLRFIDVVHAVLSVLVFVAVALRDKNVLSCFYPMPKHETQEVLDVIPVGIGLI 210

Query: 63  CSLLFVIFPTRRHGIGYPITPGK 85
           CSLLF+ FPTRRHGIGYP+TPGK
Sbjct: 211 CSLLFMAFPTRRHGIGYPVTPGK 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739529|emb|CBI29711.3| unnamed protein product [Vitis vinifera]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 67/84 (79%), Positives = 74/84 (88%)

Query: 2   DLPDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGL 61
            LPDL+KY+ RFIDGVHAVLSVLVF AVA+RDKNV+SCF+P P  E QEVLDIVPVGIGL
Sbjct: 155 SLPDLSKYKFRFIDGVHAVLSVLVFVAVAMRDKNVVSCFYPQPAREVQEVLDIVPVGIGL 214

Query: 62  ICSLLFVIFPTRRHGIGYPITPGK 85
           ICSLLFV+FPT RHGIGYP+T  K
Sbjct: 215 ICSLLFVVFPTTRHGIGYPVTHAK 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129676|ref|XP_002328775.1| predicted protein [Populus trichocarpa] gi|222839073|gb|EEE77424.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 74/81 (91%)

Query: 5   DLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICS 64
           DL+K+++ FID VHAVLSVLVF +VALR+KNVLSCF+P PKHETQEVL IVP+G+GLICS
Sbjct: 150 DLSKFKMGFIDVVHAVLSVLVFISVALREKNVLSCFYPMPKHETQEVLSIVPIGVGLICS 209

Query: 65  LLFVIFPTRRHGIGYPITPGK 85
           LLFV+FPTRRHGIGYP+  GK
Sbjct: 210 LLFVVFPTRRHGIGYPVVQGK 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803680|ref|XP_002869724.1| hypothetical protein ARALYDRAFT_492419 [Arabidopsis lyrata subsp. lyrata] gi|297315560|gb|EFH45983.1| hypothetical protein ARALYDRAFT_492419 [Arabidopsis lyrata subsp. lyrata]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/80 (73%), Positives = 72/80 (90%)

Query: 3   LPDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLI 62
           LPDL+KYRIR ID +HAVLSVLVF AVALRDKN +SCF+P P+ ET++VLDIVP+G+G+I
Sbjct: 128 LPDLSKYRIRIIDWIHAVLSVLVFGAVALRDKNAVSCFYPAPEQETKKVLDIVPMGVGVI 187

Query: 63  CSLLFVIFPTRRHGIGYPIT 82
           C LLF++FP RRHGIGYP+T
Sbjct: 188 CGLLFLVFPARRHGIGYPVT 207

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233785|ref|NP_194162.1| uncharacterized protein [Arabidopsis thaliana] gi|5051773|emb|CAB45066.1| putative protein [Arabidopsis thaliana] gi|7269281|emb|CAB79341.1| putative protein [Arabidopsis thaliana] gi|28466871|gb|AAO44044.1| At4g24310 [Arabidopsis thaliana] gi|110736143|dbj|BAF00043.1| hypothetical protein [Arabidopsis thaliana] gi|332659488|gb|AEE84888.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 72/80 (90%)

Query: 3   LPDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLI 62
           LP+L+KYRIR ID +HAVLSVLVF AVALRDKN +SCF+P P+ ET++VLDIVP+G+G+I
Sbjct: 128 LPNLSKYRIRIIDWIHAVLSVLVFGAVALRDKNAVSCFYPAPEQETKKVLDIVPMGVGVI 187

Query: 63  CSLLFVIFPTRRHGIGYPIT 82
           C +LF++FP RRHGIGYP+T
Sbjct: 188 CGMLFLVFPARRHGIGYPVT 207

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232906|ref|NP_186892.1| uncharacterized protein [Arabidopsis thaliana] gi|6957706|gb|AAF32450.1| hypothetical protein [Arabidopsis thaliana] gi|49660133|gb|AAT68357.1| hypothetical protein At3g02430 [Arabidopsis thaliana] gi|50058917|gb|AAT69203.1| hypothetical protein At3g02430 [Arabidopsis thaliana] gi|332640286|gb|AEE73807.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/80 (68%), Positives = 69/80 (86%)

Query: 3   LPDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLI 62
           LPDL KYR+RF+D +HA LSVLVF AVALRDK +  CF+P+P+ ET+ VLDIVPVG+G++
Sbjct: 134 LPDLAKYRMRFVDWIHATLSVLVFGAVALRDKYITDCFYPSPEAETKHVLDIVPVGVGVM 193

Query: 63  CSLLFVIFPTRRHGIGYPIT 82
           CSLLF++FP RRHGIGY +T
Sbjct: 194 CSLLFMVFPARRHGIGYLVT 213

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297725981|ref|NP_001175354.1| Os08g0106501 [Oryza sativa Japonica Group] gi|42407798|dbj|BAD08943.1| hypothetical protein [Oryza sativa Japonica Group] gi|42408225|dbj|BAD09382.1| hypothetical protein [Oryza sativa Japonica Group] gi|125601923|gb|EAZ41248.1| hypothetical protein OsJ_25756 [Oryza sativa Japonica Group] gi|215769473|dbj|BAH01702.1| unnamed protein product [Oryza sativa Japonica Group] gi|255678097|dbj|BAH94082.1| Os08g0106501 [Oryza sativa Japonica Group]

 Score =  121 bits (303), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 67/79 (84%)

Query: 4   PDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLIC 63
           PD ++YR+R IDGVHA+LSV VF  VA RDKNV+ CF+P+P   T+EVL IVP+G+G++C
Sbjct: 139 PDTSRYRMRAIDGVHALLSVGVFGVVAARDKNVVGCFWPSPAKGTEEVLGIVPLGVGVMC 198

Query: 64  SLLFVIFPTRRHGIGYPIT 82
           SLLFV+FPT RHGIGYP+T
Sbjct: 199 SLLFVVFPTTRHGIGYPVT 217

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125559868|gb|EAZ05316.1| hypothetical protein OsI_27521 [Oryza sativa Indica Group]

 Score =  120 bits (302), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 67/79 (84%)

Query: 4   PDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLIC 63
           PD ++YR+R IDGVHA+LSV VF  VA RDKNV+ CF+P+P   T+EVL IVP+G+G++C
Sbjct: 139 PDTSRYRLRAIDGVHALLSVGVFGVVAARDKNVVGCFWPSPAKGTEEVLGIVPLGVGVMC 198

Query: 64  SLLFVIFPTRRHGIGYPIT 82
           SLLFV+FPT RHGIGYP+T
Sbjct: 199 SLLFVVFPTTRHGIGYPVT 217

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828694|ref|XP_002882229.1| hypothetical protein ARALYDRAFT_896211 [Arabidopsis lyrata subsp. lyrata] gi|297328069|gb|EFH58488.1| hypothetical protein ARALYDRAFT_896211 [Arabidopsis lyrata subsp. lyrata]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 67/80 (83%)

Query: 3   LPDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLI 62
           LPDL KYR+R +D +HA LSVLVF AVALRDK +  CF P+P+ ET+ VLDIVPVG+G++
Sbjct: 134 LPDLAKYRMRVVDWIHATLSVLVFGAVALRDKYITDCFCPSPEAETKHVLDIVPVGVGVM 193

Query: 63  CSLLFVIFPTRRHGIGYPIT 82
           CSLLF++FP RRHGIGY +T
Sbjct: 194 CSLLFMVFPARRHGIGYLVT 213

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
TAIR|locus:2135952	213	AT4G24310 "AT4G24310" [Arabido	0.930	0.375	0.562	2.3e-23
TAIR|locus:2076894	219	AT3G02430 "AT3G02430" [Arabido	0.930	0.365	0.55	4.3e-22
TAIR|locus:2161393	214	AT5G46090 "AT5G46090" [Arabido	0.930	0.373	0.439	3.3e-15
TAIR|locus:505006493	213	AT4G18425 "AT4G18425" [Arabido	0.930	0.375	0.451	4.2e-15
TAIR|locus:504955516	165	DMP7 "AT4G28485" [Arabidopsis	0.872	0.454	0.426	3e-14
TAIR|locus:1009023066	243	AT1G09157 "AT1G09157" [Arabido	0.825	0.292	0.338	5.7e-10
TAIR|locus:2164850	244	DAU2 "AT5G39650" [Arabidopsis	0.837	0.295	0.319	1.3e-09
TAIR|locus:2089915	207	DMP1 "AT3G21520" [Arabidopsis	0.883	0.367	0.379	1.4e-09
TAIR|locus:2089865	184	DMP2 "AT3G21550" [Arabidopsis	0.883	0.413	0.355	3.3e-08

TAIR|locus:2135952 AT4G24310 "AT4G24310" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 45/80 (56%), Positives = 60/80 (75%)

Query:     3 LPDLNKYRIRFIDGVHXXXXXXXXXXXXXRDKNVLSCFFPTPKHETQEVLDIVPVGIGLI 62
             LP+L+KYRIR ID +H             RDKN +SCF+P P+ ET++VLDIVP+G+G+I
Sbjct:   128 LPNLSKYRIRIIDWIHAVLSVLVFGAVALRDKNAVSCFYPAPEQETKKVLDIVPMGVGVI 187

Query:    63 CSLLFVIFPTRRHGIGYPIT 82
             C +LF++FP RRHGIGYP+T
Sbjct:   188 CGMLFLVFPARRHGIGYPVT 207

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2076894 AT3G02430 "AT3G02430" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 44/80 (55%), Positives = 58/80 (72%)

Query:     3 LPDLNKYRIRFIDGVHXXXXXXXXXXXXXRDKNVLSCFFPTPKHETQEVLDIVPVGIGLI 62
             LPDL KYR+RF+D +H             RDK +  CF+P+P+ ET+ VLDIVPVG+G++
Sbjct:   134 LPDLAKYRMRFVDWIHATLSVLVFGAVALRDKYITDCFYPSPEAETKHVLDIVPVGVGVM 193

Query:    63 CSLLFVIFPTRRHGIGYPIT 82
             CSLLF++FP RRHGIGY +T
Sbjct:   194 CSLLFMVFPARRHGIGYLVT 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161393 AT5G46090 "AT5G46090" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 36/82 (43%), Positives = 53/82 (64%)

Query:     3 LP-DLNK-YRIRFIDGVHXXXXXXXXXXXXXRDKNVLSCFFPTPKHETQEVLDIVPVGIG 60
             LP +L+K Y++RFID VH              D+NV++CF+P P  E  E+L  +PV +G
Sbjct:   131 LPQELSKSYKLRFIDFVHAIMSFLVFGAVVLFDQNVVNCFYPEPSAEVVELLTTLPVAVG 190

Query:    61 LICSLLFVIFPTRRHGIGYPIT 82
             + CS++F  FPT RHGIG+P++
Sbjct:   191 VFCSMVFAKFPTTRHGIGFPLS 212

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:505006493 AT4G18425 "AT4G18425" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 37/82 (45%), Positives = 53/82 (64%)

Query:     3 LP-DLNK-YRIRFIDGVHXXXXXXXXXXXXXRDKNVLSCFFPTPKHETQEVLDIVPVGIG 60
             LP +L+K Y++RFID VH              D+N ++CFFP+P  E  EVL  +PVG+G
Sbjct:   130 LPQELSKRYKLRFIDFVHAFMSLFVFGAVVLFDRNAVNCFFPSPSAEALEVLTALPVGVG 189

Query:    61 LICSLLFVIFPTRRHGIGYPIT 82
             +  S+LF  FPT R+GIG+P++
Sbjct:   190 VFSSMLFATFPTTRNGIGFPLS 211

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:504955516 DMP7 "AT4G28485" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 32/75 (42%), Positives = 44/75 (58%)

Query:     8 KYRIRFIDGVHXXXXXXXXXXXXXRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLF 67
             KY+++ +D +H              D+NV  C FP P  ET+E+L  +P  IG+IC   F
Sbjct:    89 KYKLKILDFIHAIMSMLVFFAVSMFDQNVTRCLFPVPSEETKEILTSLPFVIGVICGAFF 148

Query:    68 VIFPTRRHGIGYPIT 82
             + FPTRRHGIG P+T
Sbjct:   149 LAFPTRRHGIGSPLT 163

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:1009023066 AT1G09157 "AT1G09157" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 5.7e-10, P = 5.7e-10
 Identities = 24/71 (33%), Positives = 40/71 (56%)

Query:     8 KYRIRFIDGVHXXXXXXXXXXXXXRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLF 67
             +Y++R  D VH              D+ V  C FP  + E  +V++  P+ +G++CS LF
Sbjct:   169 RYKLRVNDFVHSVMSVLVFMAIAFSDRRVTGCLFPGKEKEMDQVMESFPLMVGIVCSALF 228

Query:    68 VIFPTRRHGIG 78
             ++FPT R+G+G
Sbjct:   229 LVFPTSRYGVG 239

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2164850 DAU2 "AT5G39650" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 23/72 (31%), Positives = 40/72 (55%)

Query:     7 NKYRIRFIDGVHXXXXXXXXXXXXXRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLL 66
             ++Y++   D VH              D+ V  C FP  + E  +V++  P+ +G++CS L
Sbjct:   169 DRYKLTVNDFVHAVMSVLVFMAIAFSDRRVTGCLFPGKEKEMDQVMESFPIMVGIVCSAL 228

Query:    67 FVIFPTRRHGIG 78
             F++FPT R+G+G
Sbjct:   229 FLVFPTTRYGVG 240

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

TAIR|locus:2089915 DMP1 "AT3G21520" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 30/79 (37%), Positives = 45/79 (56%)

Query:     5 DLNKYRIRFIDGVHXXXXXXXXXXXXXRDKNVLSCFFPTPKHETQEVLDI-VPVGIGLIC 63
             DL+KY++R  D VH              D N  SCF+P  + ETQ+ L + +P  +G+  
Sbjct:   113 DLSKYKLRIADFVHAGFVLAVFGTLVLLDANTASCFYPRFR-ETQKTLVMALPPAVGVAS 171

Query:    64 SLLFVIFPTRRHGIGY-PI 81
             + +F +FP++R GIGY PI
Sbjct:   172 ATIFALFPSKRSGIGYAPI 190

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010256 "endomembrane system organization" evidence=IMP

TAIR|locus:2089865 DMP2 "AT3G21550" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 27/76 (35%), Positives = 39/76 (51%)

Query:     5 DLNKYRIRFIDGVHXXXXXXXXXXXXXRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICS 64
             DL+  R+R  D VH              D N ++CF+P      +  L ++P  IG+I  
Sbjct:    97 DLSSKRLRVGDFVHAFFSLIVFSVISLLDANTVNCFYPGFGSAGKIFLMVLPPVIGVISG 156

Query:    65 LLFVIFPTRRHGIGYP 80
              +F +FP+RRHGIG P
Sbjct:   157 AVFTVFPSRRHGIGNP 172


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.152   0.494    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       86        73   0.00091  102 3  11 22  0.47    28
                                                     29  0.45    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  475 (51 KB)
  Total size of DFA:  93 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.41u 0.14s 8.55t   Elapsed:  00:00:00
  Total cpu time:  8.41u 0.14s 8.55t   Elapsed:  00:00:00
  Start:  Fri May 10 05:53:59 2013   End:  Fri May 10 05:53:59 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00035393001 SubName- Full=Chromosome chr12 scaffold_78, whole genome shotgun sequence; (206 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	86
pfam05078	169	pfam05078, DUF679, Protein of unknown function (DU	1e-39

>gnl|CDD|147322 pfam05078, DUF679, Protein of unknown function (DUF679)

 Score =  128 bits (323), Expect = 1e-39
 Identities = 46/76 (60%), Positives = 61/76 (80%)

Query: 4   PDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLIC 63
            DL++YR+RF+D VHA  SVLVF AVAL D NV+SCF+P P  ET+EVL  +P+G+G++ 
Sbjct: 94  RDLSRYRLRFLDFVHAFFSVLVFLAVALSDANVVSCFYPGPGEETKEVLTNLPLGVGVVS 153

Query: 64  SLLFVIFPTRRHGIGY 79
           S +F++FPT RHGIGY
Sbjct: 154 SFVFMVFPTTRHGIGY 169

This family contains several uncharacterized plant proteins. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	86
PF05078	170	DUF679: Protein of unknown function (DUF679); Inte	100.0

>PF05078 DUF679: Protein of unknown function (DUF679); InterPro: IPR007770 This family contains uncharacterised plant proteins of unknown function

Probab=100.00  E-value=5.1e-42  Score=251.00  Aligned_cols=76  Identities=67%  Similarity=1.204  Sum_probs=75.0

Q ss_pred             CCccccccccchhhHHHHHHHHHHHHHhccCCcccccCCCCCccHHHHHHHhhhHHHHhhhheeeecCCCCccccC
Q 035725            4 PDLNKYRIRFIDGVHAVLSVLVFAAVALRDKNVLSCFFPTPKHETQEVLDIVPVGIGLICSLLFVIFPTRRHGIGY   79 (86)
Q Consensus         4 ~~~s~yrLr~~DfvHA~lS~~VF~avAl~D~nvv~Cf~P~~~~~~~~ll~~lPl~vG~~~S~vF~iFPt~RhGIGy   79 (86)
                      ++++|||||++|||||++|++||+++|++|+|||+||||++++|+||+|+++|++||++||++||+|||+||||||
T Consensus        95 ~~~~~yrlr~~DfvHA~lS~~VF~aval~d~~v~~Cf~P~~~~~~~~~l~~lP~~vG~~~S~vF~~FPt~R~GIGy  170 (170)
T PF05078_consen   95 RDLSKYRLRFIDFVHAFLSVVVFLAVALSDQNVVSCFFPSPSSETKEVLMNLPLGVGVLCSMVFMIFPTTRHGIGY  170 (170)
T ss_pred             cccccceEehhhhhHHHHHHHHHHHhheeCCCcceecCCCCchhHHHHHHHhHHHHHHhHeeEEEECCCCCCCCCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999998

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00