Citrus Sinensis ID: 035742

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKHPRDFLCSILSSSLTKDVALDEMLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI
Secondary Structure (PSIPRED)
ccHHHHHHHcccccccccccccccccccccccccccEEEEEEEcccccEEEEEEcccccEEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccccccccccccccccccccccccccEEEEEEcccccEEEEEcccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEcccccccccccccHcccccEEEcccccccccccHHHcccccccccccccHccccccccHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
ADALLKWKASLQshnrsllpswtnattnvsskicpcawfgiscsdagRVINISlrntglsgtlsdfsfssfpqlvhldlslngflgtipsqignlSKLSYISLQsnqlsgkipleVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKHPRDFLCSILSssltkdvaldemldprlptsscsvQEKLISIMGvafpclnespvsrptmQTVSQQLQI
Flexible Loop (DISEMBL)
ADALLKWkaslqshnrsllpswtnATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKHPRDFLCSILSSSLTKDVALDEMLDPRLPTSSCSVQEKLISIMGVAFPCLNespvsrptmqTVSQQLQI
Low Complexity Region (SEG)
ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQlkllvlvlevIKGKHPRDFLCSILSSSLTKDVALDEMLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI
Disordered region (IsUnstruct)
*****************LLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKHPRDFLCSILSSSLTKDVALDEMLDPRLPTSSCSVQEKLISIMGVAFPCL*******************
Disordered Region (DISOPRED)
ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKHPRDFLCSILSSSLTKDVALDEMLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI
Disordered Region (DISEMBL)
ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKHPRDFLCSILSSSLTKDVALDEMLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVS*************
Disordered Region (DISPRO)
ADA*LKWKASLQSHNRSLLPSWTNA*****SKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKHPRDFLCSILSSSLTKDVALDEMLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTM***S*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKHPRDFLCSILSSSLTKDVALDEMLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	0.593	0.121	0.466	1e-23
Q9LP24	1120	Probable leucine-rich rep	no	no	0.602	0.115	0.439	9e-23
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.476	0.081	0.409	1e-14
Q94F62	615	BRASSINOSTEROID INSENSITI	no	no	0.579	0.201	0.371	4e-14
Q9C9N5	685	Probable inactive leucine	no	no	0.565	0.176	0.359	3e-13
P93194	1109	Receptor-like protein kin	N/A	no	0.537	0.103	0.371	9e-13
Q8LPS5	601	Somatic embryogenesis rec	no	no	0.579	0.206	0.353	1e-12
Q9SSL9	1123	Leucine-rich repeat recep	no	no	0.476	0.090	0.398	2e-12
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.495	0.097	0.390	4e-12
Q94AG2	625	Somatic embryogenesis rec	no	no	0.584	0.2	0.322	7e-12

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 82/133 (61%), Gaps = 6/133 (4%)

Query: 1   ADALLKWKASLQSH-NRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGL 59
           A+ALLKWK++  +  + S L SW N  T   S  C  +W+G++CS  G +I ++L NTG+
Sbjct: 51  ANALLKWKSTFTNQTSSSKLSSWVNPNT---SSFC-TSWYGVACS-LGSIIRLNLTNTGI 105

Query: 60  SGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLL 119
            GT  DF FSS P L  +DLS+N F GTI    G  SKL Y  L  NQL G+IP E+G L
Sbjct: 106 EGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDL 165

Query: 120 THLKVLHFQFNQL 132
           ++L  LH   N+L
Sbjct: 166 SNLDTLHLVENKL 178

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  106 bits (265), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 80/132 (60%), Gaps = 3/132 (2%)

Query: 1   ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLS 60
           A+ALLKWK++    N S L SW +     +S  C  +W+G+SC+  G +  ++L NTG+ 
Sbjct: 34  ANALLKWKSTFT--NSSKLSSWVHDANTNTSFSC-TSWYGVSCNSRGSIEELNLTNTGIE 90

Query: 61  GTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLT 120
           GT  DF F S   L ++DLS+N   GTIP Q GNLSKL Y  L +N L+G+I   +G L 
Sbjct: 91  GTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLK 150

Query: 121 HLKVLHFQFNQL 132
           +L VL+   N L
Sbjct: 151 NLTVLYLHQNYL 162

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 67/105 (63%), Gaps = 3/105 (2%)

Query: 30  SSKICPCAWFGISCSDAG--RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGT 87
           S  I  C+W G++C + G  RVI ++L   GL+G++S + F  F  L+HLDLS N  +G 
Sbjct: 52  SDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPW-FGRFDNLIHLDLSSNNLVGP 110

Query: 88  IPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQL 132
           IP+ + NL+ L  + L SNQL+G+IP ++G L +++ L    N+L
Sbjct: 111 IPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNEL 155

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94F62|BAK1_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2

 Score = 77.8 bits (190), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 66/132 (50%), Gaps = 8/132 (6%)

Query: 1   ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLS 60
            DAL   K SL   N+ +L SW       ++ + PC WF ++C+    V  + L N  LS
Sbjct: 29  GDALSALKNSLADPNK-VLQSWD------ATLVTPCTWFHVTCNSDNSVTRVDLGNANLS 81

Query: 61  GTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLT 120
           G L        P L +L+L  N   GTIP Q+GNL++L  + L  N LSG IP  +G L 
Sbjct: 82  GQLV-MQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLK 140

Query: 121 HLKVLHFQFNQL 132
            L+ L    N L
Sbjct: 141 KLRFLRLNNNSL 152

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Controls the expression of genes associated with innate immunity in the absence of pathogens or elicitors. Involved in brassinosteroid (BR) signal transduction. Phosphorylates BRI1. May be involved in changing the equilibrium between plasma membrane-located BRI1 homodimers and endocytosed BRI1-BAK1 heterodimers. Interaction with MSBP1 stimulates the endocytosis of BAK1 and suppresses brassinosteroid signaling. Acts in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) via its interaction with FLS2 and the phosphorylation of BIK1. Involved in programmed cell death (PCD) control. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9N5|Y1668_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 7/128 (5%)

Query: 3   ALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGT 62
           ALL +K S+Q+ + S+  +W ++ +N      PC+W G++C+   RV++I L N  LSG+
Sbjct: 28  ALLSFKQSIQNQSDSVFTNWNSSDSN------PCSWQGVTCNYDMRVVSIRLPNKRLSGS 81

Query: 63  LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHL 122
           L D S  S   L H++L  N F G +P ++  L  L  + L  N  SG +P E+G L  L
Sbjct: 82  L-DPSIGSLLSLRHINLRDNDFQGKLPVELFGLKGLQSLVLSGNSFSGFVPEEIGSLKSL 140

Query: 123 KVLHFQFN 130
             L    N
Sbjct: 141 MTLDLSEN 148

Arabidopsis thaliana (taxid: 3702)

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score = 73.6 bits (179), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 6/121 (4%)

Query: 17  SLLPSWTNATTNV-----SSKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSF 71
           SL   WT+  +++     +S   PC+W G+ C     V  ++L + G+SG       S  
Sbjct: 33  SLTRHWTSIPSDITQSWNASDSTPCSWLGVECDRRQFVDTLNLSSYGISGEFGP-EISHL 91

Query: 72  PQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQ 131
             L  + LS NGF G+IPSQ+GN S L +I L SN  +G IP  +G L +L+ L   FN 
Sbjct: 92  KHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNS 151

Query: 132 L 132
           L
Sbjct: 152 L 152

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPS5|SERK5_ARATH Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 9/133 (6%)

Query: 2   DALLKWKASLQS--HNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGL 59
           DAL+  ++SL S  H  ++L SW NAT      + PC+WF ++C+    V  + L +  L
Sbjct: 29  DALIALRSSLSSGDHTNNILQSW-NAT-----HVTPCSWFHVTCNTENSVTRLDLGSANL 82

Query: 60  SGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLL 119
           SG L     +  P L +L+L  N   G IP ++G+L +L  + L +N +SG IP  +G L
Sbjct: 83  SGELVP-QLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKL 141

Query: 120 THLKVLHFQFNQL 132
             L+ L    N L
Sbjct: 142 GKLRFLRLYNNSL 154

Serine/threonine-kinase of unknown function.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SSL9|PEPR1_ARATH Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 1/103 (0%)

Query: 30  SSKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIP 89
           +S+  PC WFGI+C D+  V +++   + +SG L          L  LDLS N F GTIP
Sbjct: 58  ASEATPCNWFGITCDDSKNVASLNFTRSRVSGQLGP-EIGELKSLQILDLSTNNFSGTIP 116

Query: 90  SQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQL 132
           S +GN +KL+ + L  N  S KIP  +  L  L+VL+   N L
Sbjct: 117 STLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYINFL 159

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 61/110 (55%), Gaps = 4/110 (3%)

Query: 30  SSKICPCA--WFGISCSDAGRVIN-ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLG 86
           +S+  PC   WFG+ C  +G V+  ++L  +GLSG L          LV LDLSLN F G
Sbjct: 56  TSETTPCNNNWFGVICDLSGNVVETLNLSASGLSGQLGS-EIGELKSLVTLDLSLNSFSG 114

Query: 87  TIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLV 136
            +PS +GN + L Y+ L +N  SG++P   G L +L  L+   N L  L+
Sbjct: 115 LLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRNNLSGLI 164

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 72/155 (46%), Gaps = 30/155 (19%)

Query: 1   ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLS 60
            DAL   + +L   N ++L SW     N      PC WF ++C++   VI + L N  LS
Sbjct: 30  GDALHTLRVTLVDPN-NVLQSWDPTLVN------PCTWFHVTCNNENSVIRVDLGNAELS 82

Query: 61  G-------TLSDFSF----------------SSFPQLVHLDLSLNGFLGTIPSQIGNLSK 97
           G        L +  +                 +   LV LDL LN F G IP  +G LSK
Sbjct: 83  GHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSK 142

Query: 98  LSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQL 132
           L ++ L +N L+G IP+ +  +T L+VL    N+L
Sbjct: 143 LRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRL 177

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Phosphorylates BRI1 on 'Ser-887' and CDC48 on at least one threonine residue and on 'Ser-41'. Confers embryogenic competence. Acts redundantly with SERK2 as a control point for sporophytic development controlling male gametophyte production. Involved in the brassinolide signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
225456161	1037	PREDICTED: probable LRR receptor-like se	0.612	0.126	0.550	2e-34
225456159	1038	PREDICTED: probable LRR receptor-like se	0.612	0.126	0.557	2e-34
359491512	1078	PREDICTED: probable LRR receptor-like se	0.644	0.128	0.493	1e-31
359491509	1032	PREDICTED: probable LRR receptor-like se	0.607	0.125	0.544	6e-29
147767326	1032	hypothetical protein VITISV_008862 [Viti	0.607	0.125	0.544	6e-29
224136648	843	predicted protein [Populus trichocarpa]	0.612	0.155	0.463	3e-25
224120316	993	predicted protein [Populus trichocarpa]	0.584	0.125	0.458	1e-24
255563971	1003	receptor protein kinase, putative [Ricin	0.570	0.121	0.465	2e-24
224107159	938	predicted protein [Populus trichocarpa]	0.579	0.132	0.488	2e-24
224148440	625	predicted protein [Populus trichocarpa]	0.579	0.198	0.488	3e-24

>gi|225456161|ref|XP_002278590.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/138 (55%), Positives = 97/138 (70%), Gaps = 7/138 (5%)

Query: 3   ALLKWKASLQSHNRSLLPSWT-------NATTNVSSKICPCAWFGISCSDAGRVINISLR 55
           ALLKWKA+L +HN S L SWT       N++T++ +++ PC W+GISC+ AG VI I+L 
Sbjct: 37  ALLKWKATLHNHNHSSLLSWTLYPNNFTNSSTHLGTEVSPCKWYGISCNHAGSVIRINLT 96

Query: 56  NTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLE 115
            +GL GTL  FSFSSFP L ++D+S+N   G IP QIG LSKL Y+ L  NQ SG IP E
Sbjct: 97  ESGLGGTLQAFSFSSFPNLAYVDISMNNLSGPIPPQIGLLSKLKYLDLSINQFSGGIPPE 156

Query: 116 VGLLTHLKVLHFQFNQLK 133
           +GLLT+L+VLH   NQL 
Sbjct: 157 IGLLTNLEVLHLVQNQLN 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456159|ref|XP_002278561.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/138 (55%), Positives = 97/138 (70%), Gaps = 7/138 (5%)

Query: 3   ALLKWKASLQSHNRSLLPSW-------TNATTNVSSKICPCAWFGISCSDAGRVINISLR 55
           ALLKWKASLQ+HN S L SW       TN++T++ +   PC W+GISC+ AG VI I+L 
Sbjct: 37  ALLKWKASLQNHNHSSLLSWDLYPNNSTNSSTHLGTATSPCKWYGISCNHAGSVIKINLT 96

Query: 56  NTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLE 115
            +GL+GTL DFSFSSFP L ++D+S+N   G IP QIG L +L Y+ L  NQ SG IP E
Sbjct: 97  ESGLNGTLMDFSFSSFPNLAYVDISMNNLSGPIPPQIGLLFELKYLDLSINQFSGGIPSE 156

Query: 116 VGLLTHLKVLHFQFNQLK 133
           +GLLT+L+VLH   NQL 
Sbjct: 157 IGLLTNLEVLHLVQNQLN 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491512|ref|XP_002278614.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/154 (49%), Positives = 98/154 (63%), Gaps = 16/154 (10%)

Query: 3   ALLKWKASLQSHNRSLLPSWT---------NATTNVSSKICPCAWFGISCSDAGRVINIS 53
           ALLKWK++L +HN S L SWT         N++T+  +   PC W+GISC+ AG VI I+
Sbjct: 63  ALLKWKSTLHNHNHSFLLSWTLYPDPNNSTNSSTHHGTATGPCKWYGISCNHAGSVIRIN 122

Query: 54  LRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIP 113
           L  +GL GTL  FSFSSFP L ++D+ +N   G IP QIG LSKL Y+ L +NQ SG IP
Sbjct: 123 LTESGLRGTLQAFSFSSFPNLAYVDVCINNLSGPIPPQIGLLSKLKYLDLSTNQFSGGIP 182

Query: 114 LEVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKHP 147
            E+GLLT+L+VLH       LL L    ++G  P
Sbjct: 183 PEIGLLTNLEVLH-------LLALYTNQLEGSIP 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491509|ref|XP_002278522.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/136 (54%), Positives = 90/136 (66%), Gaps = 6/136 (4%)

Query: 3   ALLKWKASLQSHNRSLLPSWTNATTNVSSK-----ICPCAWFGISCSDAGRVINISLRNT 57
           ALLKWKA+L + N  L     N  TN S++       PC WFGISC  AG VI I+L + 
Sbjct: 37  ALLKWKATLLNQNLLLWSLHPNNITNSSAQPGTATRTPCKWFGISCK-AGSVIRINLTDL 95

Query: 58  GLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVG 117
           GL GTL DFSFSSFP L + D+++N   G IP QIG LSKL Y+ L +NQ SG+IP E+G
Sbjct: 96  GLIGTLQDFSFSSFPNLAYFDINMNKLSGPIPPQIGFLSKLKYLDLSTNQFSGRIPSEIG 155

Query: 118 LLTHLKVLHFQFNQLK 133
           LLT+L+VLH   NQL 
Sbjct: 156 LLTNLEVLHLVENQLN 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767326|emb|CAN68996.1| hypothetical protein VITISV_008862 [Vitis vinifera]

 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/136 (54%), Positives = 90/136 (66%), Gaps = 6/136 (4%)

Query: 3   ALLKWKASLQSHNRSLLPSWTNATTNVSSK-----ICPCAWFGISCSDAGRVINISLRNT 57
           ALLKWKA+L + N  L     N  TN S++       PC WFGISC  AG VI I+L + 
Sbjct: 37  ALLKWKATLLNQNLLLWSLHPNNITNSSAQPGTATRTPCKWFGISCK-AGSVIRINLTDL 95

Query: 58  GLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVG 117
           GL GTL DFSFSSFP L + D+++N   G IP QIG LSKL Y+ L +NQ SG+IP E+G
Sbjct: 96  GLIGTLQDFSFSSFPNLAYFDINMNKLSGPIPPQIGFLSKLKYLDLSTNQFSGRIPSEIG 155

Query: 118 LLTHLKVLHFQFNQLK 133
           LLT+L+VLH   NQL 
Sbjct: 156 LLTNLEVLHLVENQLN 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136648|ref|XP_002322381.1| predicted protein [Populus trichocarpa] gi|222869377|gb|EEF06508.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 85/149 (57%), Gaps = 18/149 (12%)

Query: 1   ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLS 60
           A+ALL+WK SL + ++SLL SW   +        PC WFGISC  +G V NISL N+ L 
Sbjct: 45  AEALLEWKVSLDNQSQSLLSSWDGDS--------PCNWFGISCDQSGSVTNISLSNSSLR 96

Query: 61  GTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLT 120
           GTL+   FSSFP L+ L LS N   G +PS IGNL +LS   + +N LSG IP E+  LT
Sbjct: 97  GTLNSLRFSSFPNLIELTLSYNSLYGYVPSHIGNLKRLSAFIVGNNNLSGPIPPEMNNLT 156

Query: 121 HLKVLHFQFNQLKLLVLVLEVIKGKHPRD 149
           HL  L    N+L           G  PRD
Sbjct: 157 HLFALQIFSNRL----------SGNLPRD 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120316|ref|XP_002318299.1| predicted protein [Populus trichocarpa] gi|222858972|gb|EEE96519.1| predicted protein [Populus trichocarpa]

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 80/133 (60%), Gaps = 8/133 (6%)

Query: 1   ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLS 60
           A AL KWKASL + ++SLL SW   T        PC W G+ C  AG + N+SL+N GL 
Sbjct: 46  AQALQKWKASLDNESQSLLSSWNGDT--------PCKWVGVDCYQAGGIANLSLQNAGLR 97

Query: 61  GTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLT 120
           GT+   +FSSFP L+ L+LS N   GTIPSQI NLS+L+ + L  N +SG IP E+  L 
Sbjct: 98  GTIHSLNFSSFPSLMKLNLSNNSLYGTIPSQISNLSRLTILDLSYNDISGNIPSEISFLK 157

Query: 121 HLKVLHFQFNQLK 133
            L++     N + 
Sbjct: 158 SLRIFSLSNNDMN 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563971|ref|XP_002522985.1| receptor protein kinase, putative [Ricinus communis] gi|223537797|gb|EEF39415.1| receptor protein kinase, putative [Ricinus communis]

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 84/131 (64%), Gaps = 9/131 (6%)

Query: 4   LLKWKASLQSHNRSLLPSWTNATTNVSSKICPC-AWFGISCSDAGRVINISLRNTGLSGT 62
           LL WKA+L + ++S L SW + +        PC +WFGI C++AG V NISLR++GL+GT
Sbjct: 38  LLGWKATLDNQSQSFLSSWASGS--------PCNSWFGIHCNEAGSVTNISLRDSGLTGT 89

Query: 63  LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHL 122
           L   SFSSFP L+ L+ S N F G+IP  + NLSKL+ + L  N++SG IP E+G+L  L
Sbjct: 90  LQSLSFSSFPNLIRLNFSNNSFYGSIPPTVANLSKLNILDLSVNKISGSIPQEIGMLRSL 149

Query: 123 KVLHFQFNQLK 133
             +    N L 
Sbjct: 150 TYIDLSNNFLN 160

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107159|ref|XP_002333557.1| predicted protein [Populus trichocarpa] gi|222837233|gb|EEE75612.1| predicted protein [Populus trichocarpa]

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 82/133 (61%), Gaps = 9/133 (6%)

Query: 1   ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPC-AWFGISCSDAGRVINISLRNTGL 59
           A+ALL+WKASL + ++SLL SW          I PC  W GI+C ++G V N++L++ GL
Sbjct: 51  AEALLQWKASLDNQSQSLLSSWVG--------ISPCINWIGITCDNSGSVTNLTLQSFGL 102

Query: 60  SGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLL 119
            GTL DF+FSSFP L  LDL  N   GTIP + G L  LSY+ L  N LSG IP  +G +
Sbjct: 103 RGTLYDFNFSSFPNLFWLDLQKNSLSGTIPREFGKLRNLSYLDLSINHLSGPIPSSIGNM 162

Query: 120 THLKVLHFQFNQL 132
           T L VL    N L
Sbjct: 163 TMLTVLALSHNNL 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224148440|ref|XP_002336653.1| predicted protein [Populus trichocarpa] gi|222836449|gb|EEE74856.1| predicted protein [Populus trichocarpa]

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 82/133 (61%), Gaps = 9/133 (6%)

Query: 1   ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPC-AWFGISCSDAGRVINISLRNTGL 59
           A+ALL+WKASL + ++SLL SW          I PC  W GI+C ++G V N++L++ GL
Sbjct: 51  AEALLQWKASLHNQSQSLLSSWV--------GISPCINWIGITCDNSGSVTNLTLQSFGL 102

Query: 60  SGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLL 119
            GTL DF+FSSFP L  LDL  N   GTIP + G L  LSY+ L  N LSG IP  +G +
Sbjct: 103 RGTLYDFNFSSFPNLFWLDLQKNSLSGTIPREFGKLRNLSYLDLSINHLSGPIPSSIGNM 162

Query: 120 THLKVLHFQFNQL 132
           T L VL    N L
Sbjct: 163 TMLTVLALSHNNL 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.588	0.112	0.458	2e-31
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.588	0.120	0.462	1.9e-23
TAIR|locus:2131518	1091	AT4G26540 [Arabidopsis thalian	0.565	0.110	0.367	3.4e-19
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.471	0.080	0.403	1.9e-18
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.565	0.111	0.343	4.7e-18
TAIR|locus:2007918	1088	PEPR2 "PEP1 receptor 2" [Arabi	0.467	0.091	0.394	4.8e-18
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.443	0.086	0.414	6.3e-18
TAIR|locus:2032697	1123	PEPR1 "PEP1 receptor 1" [Arabi	0.560	0.106	0.371	6.4e-18
TAIR|locus:2033379	685	AT1G66830 [Arabidopsis thalian	0.565	0.176	0.359	6.7e-18
TAIR|locus:2013021	625	SERK1 "somatic embryogenesis r	0.565	0.193	0.348	2.4e-17

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
 Identities = 60/131 (45%), Positives = 81/131 (61%)

Query:     1 ADALLKWKASLQSHNRSLLPSWTN-ATTNVSSKICPCAWFGISCSDAGRVINISLRNTGL 59
             A+ALLKWK++    N S L SW + A TN S   C  +W+G+SC+  G +  ++L NTG+
Sbjct:    34 ANALLKWKSTFT--NSSKLSSWVHDANTNTSFS-CT-SWYGVSCNSRGSIEELNLTNTGI 89

Query:    60 SGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLL 119
              GT  DF F S   L ++DLS+N   GTIP Q GNLSKL Y  L +N L+G+I   +G L
Sbjct:    90 EGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNL 149

Query:   120 THLKVLHFQFN 130
              +L VL+   N
Sbjct:   150 KNLTVLYLHQN 160

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 1.9e-23, P = 1.9e-23
 Identities = 61/132 (46%), Positives = 81/132 (61%)

Query:     1 ADALLKWKASLQSH-NRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGL 59
             A+ALLKWK++  +  + S L SW N  T   S  C  +W+G++CS  G +I ++L NTG+
Sbjct:    51 ANALLKWKSTFTNQTSSSKLSSWVNPNT---SSFCT-SWYGVACS-LGSIIRLNLTNTGI 105

Query:    60 SGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLL 119
              GT  DF FSS P L  +DLS+N F GTI    G  SKL Y  L  NQL G+IP E+G L
Sbjct:   106 EGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDL 165

Query:   120 THLKVLHFQFNQ 131
             ++L  LH   N+
Sbjct:   166 SNLDTLHLVENK 177

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2131518 AT4G26540 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
 Identities = 47/128 (36%), Positives = 61/128 (47%)

Query:     3 ALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGT 62
             ALL WK+ L     +   SW  A T+      PC W G+ C+  G V  I L+   L G+
Sbjct:    31 ALLSWKSQLNISGDAF-SSWHVADTS------PCNWVGVKCNRRGEVSEIQLKGMDLQGS 83

Query:    63 LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHL 122
             L   S  S   L  L LS     G IP +IG+ ++L  + L  N LSG IP+E+  L  L
Sbjct:    84 LPVTSLRSLKSLTSLTLSSLNLTGVIPKEIGDFTELELLDLSDNSLSGDIPVEIFRLKKL 143

Query:   123 KVLHFQFN 130
             K L    N
Sbjct:   144 KTLSLNTN 151

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
 Identities = 42/104 (40%), Positives = 66/104 (63%)

Query:    30 SSKICPCAWFGISCSDAG--RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGT 87
             S  I  C+W G++C + G  RVI ++L   GL+G++S + F  F  L+HLDLS N  +G 
Sbjct:    52 SDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPW-FGRFDNLIHLDLSSNNLVGP 110

Query:    88 IPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQ 131
             IP+ + NL+ L  + L SNQL+G+IP ++G L +++ L    N+
Sbjct:   111 IPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNE 154

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 4.7e-18, Sum P(2) = 4.7e-18
 Identities = 44/128 (34%), Positives = 65/128 (50%)

Query:     3 ALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGT 62
             ALL WK+ L     +L  SW  + +N      PC W GI C++ G+V  I L+     G 
Sbjct:    34 ALLSWKSQLNISGDAL-SSWKASESN------PCQWVGIKCNERGQVSEIQLQVMDFQGP 86

Query:    63 LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHL 122
             L   +      L  L L+     G+IP ++G+LS+L  + L  N LSG+IP+++  L  L
Sbjct:    87 LPATNLRQIKSLTLLSLTSVNLTGSIPKELGDLSELEVLDLADNSLSGEIPVDIFKLKKL 146

Query:   123 KVLHFQFN 130
             K+L    N
Sbjct:   147 KILSLNTN 154

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2007918 PEPR2 "PEP1 receptor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 4.8e-18, Sum P(2) = 4.8e-18
 Identities = 41/104 (39%), Positives = 58/104 (55%)

Query:    30 SSKICPCA--WFGISCSDAGRVIN-ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLG 86
             +S+  PC   WFG+ C  +G V+  ++L  +GLSG L          LV LDLSLN F G
Sbjct:    56 TSETTPCNNNWFGVICDLSGNVVETLNLSASGLSGQLGS-EIGELKSLVTLDLSLNSFSG 114

Query:    87 TIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFN 130
              +PS +GN + L Y+ L +N  SG++P   G L +L  L+   N
Sbjct:   115 LLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQNLTFLYLDRN 158

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042277 "peptide binding" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
 Identities = 41/99 (41%), Positives = 56/99 (56%)

Query:    30 SSKICPCAWFGISCSDAG---RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLG 86
             S+   PC W G+ CS+      V++++L +  LSG LS  S      L  LDLS NG  G
Sbjct:    53 SNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKLSP-SIGGLVHLKQLDLSYNGLSG 111

Query:    87 TIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL 125
              IP +IGN S L  + L +NQ  G+IP+E+G L  L+ L
Sbjct:   112 KIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENL 150

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2032697 PEPR1 "PEP1 receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
 Identities = 45/121 (37%), Positives = 63/121 (52%)

Query:    10 SLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFS 69
             SL  H   + P  T+     +S+  PC WFGI+C D+  V +++   + +SG L      
Sbjct:    38 SLLKHLDRVPPQVTSTWKINASEATPCNWFGITCDDSKNVASLNFTRSRVSGQLGP-EIG 96

Query:    70 SFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQF 129
                 L  LDLS N F GTIPS +GN +KL+ + L  N  S KIP  +  L  L+VL+   
Sbjct:    97 ELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYI 156

Query:   130 N 130
             N
Sbjct:   157 N 157

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045087 "innate immune response" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006955 "immune response" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2033379 AT1G66830 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 6.7e-18, Sum P(2) = 6.7e-18
 Identities = 46/128 (35%), Positives = 70/128 (54%)

Query:     3 ALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGT 62
             ALL +K S+Q+ + S+  +W ++ +N      PC+W G++C+   RV++I L N  LSG+
Sbjct:    28 ALLSFKQSIQNQSDSVFTNWNSSDSN------PCSWQGVTCNYDMRVVSIRLPNKRLSGS 81

Query:    63 LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHL 122
             L D S  S   L H++L  N F G +P ++  L  L  + L  N  SG +P E+G L  L
Sbjct:    82 L-DPSIGSLLSLRHINLRDNDFQGKLPVELFGLKGLQSLVLSGNSFSGFVPEEIGSLKSL 140

Query:   123 KVLHFQFN 130
               L    N
Sbjct:   141 MTLDLSEN 148

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2013021 SERK1 "somatic embryogenesis receptor-like kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
 Identities = 45/129 (34%), Positives = 62/129 (48%)

Query:     2 DALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSG 61
             DAL   + +L   N ++L SW     N      PC WF ++C++   VI + L N  LSG
Sbjct:    31 DALHTLRVTLVDPN-NVLQSWDPTLVN------PCTWFHVTCNNENSVIRVDLGNAELSG 83

Query:    62 TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
              L          L +L+L  N   G IPS +GNL+ L  + L  N  SG IP  +G L+ 
Sbjct:    84 HLVP-ELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSK 142

Query:   122 LKVLHFQFN 130
             L+ L    N
Sbjct:   143 LRFLRLNNN 151

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=TAS

GO:0009556 "microsporogenesis" evidence=IGI;IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI;IMP

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0007030 "Golgi organization" evidence=IGI

GO:0010227 "floral organ abscission" evidence=IGI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0016310 "phosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0051301 "cell division" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017830001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (846 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 34/153 (22%)

Query: 4   LLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVI-------NIS--- 53
           LL +K+S+    +  L +W N++ +V      C W GI+C+++ RV+       NIS   
Sbjct: 34  LLSFKSSINDPLK-YLSNW-NSSADV------CLWQGITCNNSSRVVSIDLSGKNISGKI 85

Query: 54  --------------LRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLS 99
                         L N  LSG + D  F++   L +L+LS N F G+IP   G++  L 
Sbjct: 86  SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE 143

Query: 100 YISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQL 132
            + L +N LSG+IP ++G  + LKVL    N L
Sbjct: 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 11/108 (10%)

Query: 35  PCA-----WFGISC---SDAGR--VINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGF 84
           PC      W G  C   S  G+  +  + L N GL G + +   S    L  ++LS N  
Sbjct: 396 PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSI 454

Query: 85  LGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQL 132
            G IP  +G+++ L  + L  N  +G IP  +G LT L++L+   N L
Sbjct: 455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + L N  LSG + +    SF  L  LDL  N  +G IP+ + NL+ L +++L SNQL G+
Sbjct: 145 LDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ 203

Query: 112 IPLEVGLLTHLKVLHFQFNQL 132
           IP E+G +  LK ++  +N L
Sbjct: 204 IPRELGQMKSLKWIYLGYNNL 224

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG 110
           +I+L    + G +   S  S   L  LDLS N F G+IP  +G L+ L  ++L  N LSG
Sbjct: 446 SINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Query: 111 KIPLEVG-LLTHLKVLHFQFN 130
           ++P  +G  L H    +F  N
Sbjct: 505 RVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 27/59 (45%), Positives = 31/59 (52%)

Query: 74  LVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQL 132
           L HLDL  N   G IPS +GNL  L Y+ L  N+LSG IP  +  L  L  L    N L
Sbjct: 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 44  SDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISL 103
             + R+ N+ L     SG +      S  +L+ L LS N   G IP ++ +  KL  + L
Sbjct: 472 FGSKRLENLDLSRNQFSGAVPR-KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530

Query: 104 QSNQLSGKIPLEVGLLTHLKVLHFQFNQL 132
             NQLSG+IP     +  L  L    NQL
Sbjct: 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 1  ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCS 44
           DALL +K+SL       L SW  ++++      PC+W G++C 
Sbjct: 5  RDALLAFKSSLNGDPSGALSSWNPSSSD------PCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 17/124 (13%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
           S  S  +L+ LDLS N   G IP  +  L  L  + L SN  +GKIP+ +  L  L+VL 
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338

Query: 127 F--------------QFNQLKLLVLVLEVIKGKHPRDFLCSILSSSLTKDVALDEMLDPR 172
                          + N L +L L    + G+ P + LCS  S +L K +     L+  
Sbjct: 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP-EGLCS--SGNLFKLILFSNSLEGE 395

Query: 173 LPTS 176
           +P S
Sbjct: 396 IPKS 399

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 26/66 (39%), Positives = 37/66 (56%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
           S ++   L  L L+ N  +G IP ++G +  L +I L  N LSG+IP E+G LT L  L 
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242

Query: 127 FQFNQL 132
             +N L
Sbjct: 243 LVYNNL 248

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 49  VINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQL 108
           ++ + L    LSG + D   SS  +LV LDLS N   G IP+    +  LS + L  NQL
Sbjct: 501 LMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559

Query: 109 SGKIPLEVG 117
           SG+IP  +G
Sbjct: 560 SGEIPKNLG 568

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 44  SDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISL 103
           S   +++++ L +  LSG +   SFS  P L  LDLS N   G IP  +GN+  L  +++
Sbjct: 520 SSCKKLVSLDLSHNQLSGQIPA-SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578

Query: 104 QSNQLSGKIP 113
             N L G +P
Sbjct: 579 SHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 31/54 (57%)

Query: 79  LSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQL 132
           L  N   G IP +IG L+ L+++ L  N L+G IP  +G L +L+ L    N+L
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 25/66 (37%), Positives = 33/66 (50%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
           S  +   L +L L  N   G IP  I +L KL  + L  N LSG+IP  V  L +L++LH
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314

Query: 127 FQFNQL 132
              N  
Sbjct: 315 LFSNNF 320

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.76
PLN03150	623	hypothetical protein; Provisional	99.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.28
PLN03150	623	hypothetical protein; Provisional	99.07
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.05
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.82
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.76
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.73
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.69
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.65
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.63
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.61
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.58
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.55
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.49
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.34
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.33
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.26
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.26
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.24
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.15
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.14
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.07
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.04
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.02
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.92
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.88
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.86
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.85
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.51
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.3
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.21
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.15
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.98
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.95
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.92
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.8
KOG1187	361	consensus Serine/threonine protein kinase [Signal	96.57
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.48
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.36
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.27
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.17
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.1
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.68
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.31
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	94.95
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.9
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.9
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.18
PRK15386	426	type III secretion protein GogB; Provisional	93.82
smart00370	26	LRR Leucine-rich repeats, outliers.	92.41
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.41
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.24
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	91.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.13
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	90.95
PRK15386	426	type III secretion protein GogB; Provisional	89.75
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	88.88
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.5
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	88.27
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	87.23
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	86.94
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	86.85
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.83
PHA02988	283	hypothetical protein; Provisional	86.19
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	85.32
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	85.12
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	84.33
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	84.25
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	83.98
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	83.95
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	83.84
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	83.48
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	83.27
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	83.1
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	83.06
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	82.85
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	82.83
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	82.63
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	82.54
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	82.47
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	82.16
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	82.06
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	81.94
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	81.8
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	81.73
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	81.65
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	81.51
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	81.31
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	81.27
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	81.26
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	81.25
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	81.12
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	81.01
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	80.47
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	80.34

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.76  E-value=2.2e-18  Score=161.47  Aligned_cols=126  Identities=32%  Similarity=0.614  Sum_probs=100.4

Q ss_pred             ChhhhhhhhcccCCCCCCCCCCcCCCCCCCCCCcCcccceeeeCCCCCeEEEEecCCCCccccCccccCCCCCCcEEeCc
Q 035742            1 ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLS   80 (214)
Q Consensus         1 ~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~w~gv~c~~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~   80 (214)
                      ++||++||+++.+ +...+.+| ....+      +|.|.||+|+..++++.|+|++|.++|.++ ..|..+++|+.|+++
T Consensus        31 ~~~l~~~~~~~~~-~~~~~~~w-~~~~~------~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls  101 (968)
T PLN00113         31 LELLLSFKSSIND-PLKYLSNW-NSSAD------VCLWQGITCNNSSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLS  101 (968)
T ss_pred             HHHHHHHHHhCCC-CcccCCCC-CCCCC------CCcCcceecCCCCcEEEEEecCCCccccCC-hHHhCCCCCCEEECC
Confidence            4689999999964 45667899 45666      999999999977899999999999999998 899999999999999


Q ss_pred             CCcCcCCChhhhh-CCcccceeeccccccccCCCccccccccchhhhcccccceeecc
Q 035742           81 LNGFLGTIPSQIG-NLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVL  137 (214)
Q Consensus        81 ~n~l~~~~p~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p  137 (214)
                      +|.+.+.+|..+. .+++|++|++++|.++|.+|.  +.+++|++|++++|.+++.+|
T Consensus       102 ~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p  157 (968)
T PLN00113        102 NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIP  157 (968)
T ss_pred             CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCC
Confidence            9999988998765 788888888888777765553  334555555555555555444

>PLN03150 hypothetical protein; Provisional

Probab=99.73  E-value=7.8e-18  Score=150.54  Aligned_cols=129  Identities=29%  Similarity=0.426  Sum_probs=110.7

Q ss_pred             hhhhhhhhcccCCCCCCCCCCcCCCCCCCCCCcCcccceeeeCCC-----CCeEEEEecCCCCccccCccccCCCCCCcE
Q 035742            2 DALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDA-----GRVINISLRNTGLSGTLSDFSFSSFPQLVH   76 (214)
Q Consensus         2 ~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~w~gv~c~~~-----~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~   76 (214)
                      +||+++|+++... .  ..+|.   .++|+ .+.|.|.||.|...     ..++.|+|++|.++|.+| ..+..+++|+.
T Consensus       375 ~aL~~~k~~~~~~-~--~~~W~---g~~C~-p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip-~~i~~L~~L~~  446 (623)
T PLN03150        375 SALQTLKSSLGLP-L--RFGWN---GDPCV-PQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP-NDISKLRHLQS  446 (623)
T ss_pred             HHHHHHHHhcCCc-c--cCCCC---CCCCC-CcccccccceeeccCCCCceEEEEEECCCCCccccCC-HHHhCCCCCCE
Confidence            6899999988542 1  24793   34121 11247999999621     248999999999999999 99999999999


Q ss_pred             EeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742           77 LDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus        77 L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~  138 (214)
                      |+|++|.+.|.+|..++.+++|+.|++++|+++|.+|..++++++|+.|+|++|+++|.+|.
T Consensus       447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  508 (623)
T PLN03150        447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA  508 (623)
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence            99999999999999999999999999999999999999999999999999999999999885

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.28  E-value=3.7e-12  Score=119.74  Aligned_cols=91  Identities=32%  Similarity=0.454  Sum_probs=63.2

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|++++|.+++.+| ..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.++|.+|..+..+++|+.|+
T Consensus       475 ~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  553 (968)
T PLN00113        475 KRLENLDLSRNQFSGAVP-RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD  553 (968)
T ss_pred             ccceEEECcCCccCCccC-hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence            356777777777776666 6666677777777777777666776676777777777777777766676666667777777


Q ss_pred             cccccceeecch
Q 035742          127 FQFNQLKLLVLV  138 (214)
Q Consensus       127 l~~N~l~g~~p~  138 (214)
                      +++|+++|.+|.
T Consensus       554 Ls~N~l~~~~p~  565 (968)
T PLN00113        554 LSQNQLSGEIPK  565 (968)
T ss_pred             CCCCcccccCCh
Confidence            777777666664

>PLN03150 hypothetical protein; Provisional

Probab=99.07  E-value=1.4e-10  Score=104.13  Aligned_cols=91  Identities=31%  Similarity=0.466  Sum_probs=81.8

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCcccccc-ccchh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLL-THLKV  124 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l-~~L~~  124 (214)
                      ..+|+.|+|++|.++|.+| ..+..+++|+.|+|++|+++|.+|..++++++|+.|++++|.++|.+|..++.+ .++..
T Consensus       441 L~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~  519 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS  519 (623)
T ss_pred             CCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence            3589999999999999999 999999999999999999999999999999999999999999999999988764 46678


Q ss_pred             hhcccccceeecc
Q 035742          125 LHFQFNQLKLLVL  137 (214)
Q Consensus       125 L~l~~N~l~g~~p  137 (214)
                      +++.+|......|
T Consensus       520 l~~~~N~~lc~~p  532 (623)
T PLN03150        520 FNFTDNAGLCGIP  532 (623)
T ss_pred             EEecCCccccCCC
Confidence            8888887655444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.05  E-value=2.2e-11  Score=90.43  Aligned_cols=84  Identities=25%  Similarity=0.441  Sum_probs=58.8

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      ++++.|.|++|.++ .+| +.+..+.+|+.|++++|++. .+|..+..++.|+.|+++-|++. .+|..|+.++.|+.||
T Consensus        33 s~ITrLtLSHNKl~-~vp-pnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVP-PNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhcccCcee-ecC-CcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            46677777777777 666 67777777777777777776 66777777777777777777766 6677777777776666


Q ss_pred             ccccccee
Q 035742          127 FQFNQLKL  134 (214)
Q Consensus       127 l~~N~l~g  134 (214)
                      +..|+++.
T Consensus       109 ltynnl~e  116 (264)
T KOG0617|consen  109 LTYNNLNE  116 (264)
T ss_pred             cccccccc
Confidence            66666653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.01  E-value=4e-11  Score=89.12  Aligned_cols=105  Identities=21%  Similarity=0.297  Sum_probs=91.5

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeecccccccc-CCCccccccccchh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG-KIPLEVGLLTHLKV  124 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~  124 (214)
                      ..+|+.|++.+|++. .+| ..++.++.|+.|++.-|++. .+|..|+.++.|+.||+.+|++.. .+|..|..++.|+.
T Consensus        55 l~nlevln~~nnqie-~lp-~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra  131 (264)
T KOG0617|consen   55 LKNLEVLNLSNNQIE-ELP-TSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA  131 (264)
T ss_pred             hhhhhhhhcccchhh-hcC-hhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence            347889999999999 899 99999999999999999998 899999999999999999999974 58889999999999


Q ss_pred             hhcccccceeecchhhhhcCCCCchhhhh
Q 035742          125 LHFQFNQLKLLVLVLEVIKGKHPRDFLCS  153 (214)
Q Consensus       125 L~l~~N~l~g~~p~~~~l~g~~p~~~~~~  153 (214)
                      |++++|.|.-.+|+.+.++..--..+..|
T Consensus       132 lyl~dndfe~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen  132 LYLGDNDFEILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             HHhcCCCcccCChhhhhhcceeEEeeccC
Confidence            99999999998888777775544444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.97  E-value=3.6e-10  Score=70.61  Aligned_cols=60  Identities=35%  Similarity=0.552  Sum_probs=38.2

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeecccccc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQL  108 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l  108 (214)
                      +|+.|++++|.++ .+|...|.++++|++|++++|.+....|..|..+++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4666777777666 44435666666777777766666644455566666666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=2.5e-10  Score=71.31  Aligned_cols=61  Identities=33%  Similarity=0.441  Sum_probs=55.1

Q ss_pred             CCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcccccc
Q 035742           72 PQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQL  132 (214)
Q Consensus        72 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l  132 (214)
                      ++|+.|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999955556789999999999999999977778999999999999999975

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.82  E-value=2e-09  Score=89.17  Aligned_cols=107  Identities=23%  Similarity=0.381  Sum_probs=89.4

Q ss_pred             CCCCCcCccc---ceeeeCCCC----------CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCC
Q 035742           29 VSSKICPCAW---FGISCSDAG----------RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNL   95 (214)
Q Consensus        29 ~~~~~~~c~w---~gv~c~~~~----------~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   95 (214)
                      -|-+.|.|.-   .-|+|+..+          ..++|+|..|.|+ .||+..|..+.+|+.|||++|+|+..-|.+|..+
T Consensus        36 ~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL  114 (498)
T KOG4237|consen   36 ACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL  114 (498)
T ss_pred             cCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhh
Confidence            3556677765   558898532          6788999999999 7887999999999999999999999999999999


Q ss_pred             cccceeeccc-cccccCCC-ccccccccchhhhcccccceeecc
Q 035742           96 SKLSYISLQS-NQLSGKIP-LEVGLLTHLKVLHFQFNQLKLLVL  137 (214)
Q Consensus        96 ~~L~~L~ls~-N~l~g~~p-~~~~~l~~L~~L~l~~N~l~g~~p  137 (214)
                      ++|..|-+-+ |+|+ .+| ..|+++.+|+.|.+.-|++.....
T Consensus       115 ~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~  157 (498)
T KOG4237|consen  115 ASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQ  157 (498)
T ss_pred             HhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhH
Confidence            9988887666 9999 555 578999999999999998876543

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.81  E-value=2.7e-09  Score=61.78  Aligned_cols=37  Identities=38%  Similarity=0.969  Sum_probs=27.0

Q ss_pred             ChhhhhhhhcccCCCCCCCCCCcCCC--CCCCCCCcCcccceeeeC
Q 035742            1 ADALLKWKASLQSHNRSLLPSWTNAT--TNVSSKICPCAWFGISCS   44 (214)
Q Consensus         1 ~~~l~~~~~~~~~~~~~~~~~W~~~~--~~~~~~~~~c~w~gv~c~   44 (214)
                      ++||++||.++.+++...+.+|. .+  .+      +|.|.||+|+
T Consensus         5 ~~aLl~~k~~l~~~~~~~l~~W~-~~~~~~------~C~W~GV~Cd   43 (43)
T PF08263_consen    5 RQALLAFKKSLNNDPSGVLSSWN-PSSDSD------PCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHCTT-SC-CCCTT---TT--S-------CCCSTTEEE-
T ss_pred             HHHHHHHHHhcccccCcccccCC-CcCCCC------CeeeccEEeC
Confidence            47999999999976567899994 43  56      9999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.76  E-value=1.1e-09  Score=94.64  Aligned_cols=90  Identities=21%  Similarity=0.147  Sum_probs=52.6

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      .|+.|+|+.|.|....+ ..+...++|++|+|++|+++..-+.+|..+..|+.|+|++|.+...--..|..+++|+.|||
T Consensus       294 ~L~~L~lS~NaI~rih~-d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL  372 (873)
T KOG4194|consen  294 SLEQLDLSYNAIQRIHI-DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL  372 (873)
T ss_pred             hhhhhccchhhhheeec-chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence            34455555555554434 45555555556666666655444555555555566666666555333344666777777777


Q ss_pred             ccccceeecch
Q 035742          128 QFNQLKLLVLV  138 (214)
Q Consensus       128 ~~N~l~g~~p~  138 (214)
                      ++|.+++.|-+
T Consensus       373 r~N~ls~~IED  383 (873)
T KOG4194|consen  373 RSNELSWCIED  383 (873)
T ss_pred             cCCeEEEEEec
Confidence            77777776654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.73  E-value=2.1e-09  Score=89.27  Aligned_cols=105  Identities=22%  Similarity=0.270  Sum_probs=61.3

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+++.|+|++|-+. .+| .+++.+..|+.|+++.|+|. .+|..+..+..++.+-.++|++....|..+.++.+|.+||
T Consensus       435 ~kLt~L~L~NN~Ln-~LP-~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD  511 (565)
T KOG0472|consen  435 QKLTFLDLSNNLLN-DLP-EEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD  511 (565)
T ss_pred             hcceeeecccchhh-hcc-hhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence            46777777777766 777 77777777888888877775 5555544444444444444444422222355555555555


Q ss_pred             cccccceeecchhhhhcCCCCchhhhhh
Q 035742          127 FQFNQLKLLVLVLEVIKGKHPRDFLCSI  154 (214)
Q Consensus       127 l~~N~l~g~~p~~~~l~g~~p~~~~~~~  154 (214)
                      +.+|.+...+|.+..++...-.++..|.
T Consensus       512 L~nNdlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  512 LQNNDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             cCCCchhhCChhhccccceeEEEecCCc
Confidence            5555555555555555544444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.69  E-value=2.3e-08  Score=75.58  Aligned_cols=82  Identities=27%  Similarity=0.374  Sum_probs=24.6

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhh-hCCcccceeeccccccccC-CCccccccccchhh
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGK-IPLEVGLLTHLKVL  125 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~L  125 (214)
                      +++.|+|++|.|+ .+.  .+..++.|+.|++++|.++ .+.+.+ ..+++|+.|++++|+|... .-..+..+++|+.|
T Consensus        43 ~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   43 KLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             T--EEE-TTS--S---T--T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             CCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            4555566666555 333  3555555666666666555 233233 2455566666666655421 11234445555555


Q ss_pred             hcccccce
Q 035742          126 HFQFNQLK  133 (214)
Q Consensus       126 ~l~~N~l~  133 (214)
                      ++.+|.++
T Consensus       119 ~L~~NPv~  126 (175)
T PF14580_consen  119 SLEGNPVC  126 (175)
T ss_dssp             E-TT-GGG
T ss_pred             eccCCccc
Confidence            55555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.65  E-value=1.6e-08  Score=76.41  Aligned_cols=81  Identities=25%  Similarity=0.378  Sum_probs=29.9

Q ss_pred             CeEEEEecCCCCccccCccccC-CCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccc-cccccchhh
Q 035742           48 RVINISLRNTGLSGTLSDFSFS-SFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEV-GLLTHLKVL  125 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~-~~l~~L~~L  125 (214)
                      +++.|+|++|.|+ .+.  .++ .+.+|+.|++++|.++ .++ .+..+++|+.|++++|+++ .+...+ ..+++|+.|
T Consensus        20 ~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccc-ccc--chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            5799999999998 554  565 6899999999999998 444 6788999999999999999 565545 468999999


Q ss_pred             hccccccee
Q 035742          126 HFQFNQLKL  134 (214)
Q Consensus       126 ~l~~N~l~g  134 (214)
                      ++++|++..
T Consensus        94 ~L~~N~I~~  102 (175)
T PF14580_consen   94 YLSNNKISD  102 (175)
T ss_dssp             E-TTS---S
T ss_pred             ECcCCcCCC
Confidence            999999974

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.63  E-value=1.1e-08  Score=89.65  Aligned_cols=93  Identities=23%  Similarity=0.323  Sum_probs=56.9

Q ss_pred             CeEEEEecCCCCcc-ccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCcc-ccccccchhh
Q 035742           48 RVINISLRNTGLSG-TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLE-VGLLTHLKVL  125 (214)
Q Consensus        48 ~L~~L~L~~n~l~g-~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~~L  125 (214)
                      .|+++.+..|+++. .+| ..+..+..|+.||||+|++. ..|..+....++-.|+||+|+|. .||.. |.+++.|-+|
T Consensus        79 ~LRsv~~R~N~LKnsGiP-~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIP-TDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL  155 (1255)
T ss_pred             hhHHHhhhccccccCCCC-chhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence            45555556665542 255 56666666666666666666 56666666666666666666666 55533 4566666666


Q ss_pred             hcccccceeecchhhhhc
Q 035742          126 HFQFNQLKLLVLVLEVIK  143 (214)
Q Consensus       126 ~l~~N~l~g~~p~~~~l~  143 (214)
                      ||++|++...+|....+.
T Consensus       156 DLS~NrLe~LPPQ~RRL~  173 (1255)
T KOG0444|consen  156 DLSNNRLEMLPPQIRRLS  173 (1255)
T ss_pred             ccccchhhhcCHHHHHHh
Confidence            666666666666544443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.61  E-value=5.1e-09  Score=87.05  Aligned_cols=96  Identities=24%  Similarity=0.278  Sum_probs=83.5

Q ss_pred             CcccceeeeCCC---------------CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccc
Q 035742           35 PCAWFGISCSDA---------------GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLS   99 (214)
Q Consensus        35 ~c~w~gv~c~~~---------------~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~   99 (214)
                      -|.+.-.+|-+.               ..|+.|+++.|+|. .+| ..+..+..++.+-.++|++...-|..+.++.+|.
T Consensus       431 l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP-~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~  508 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLP-ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT  508 (565)
T ss_pred             HHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cch-HHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence            677777777531               26899999999998 889 7777778888888888999856666699999999


Q ss_pred             eeeccccccccCCCccccccccchhhhcccccce
Q 035742          100 YISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLK  133 (214)
Q Consensus       100 ~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~  133 (214)
                      .||+.+|.+. .+|+.++++++|++|++.+|.|+
T Consensus       509 tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  509 TLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            9999999999 99999999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.58  E-value=6.9e-09  Score=93.73  Aligned_cols=86  Identities=29%  Similarity=0.425  Sum_probs=78.8

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|+|++|.|. .+|+..+.++..|+.|+||+|.++ .+|..+.++..|++|...+|++. .+| .+.+++.|+++
T Consensus       382 ~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~l  457 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVL  457 (1081)
T ss_pred             ccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEE
Confidence            348999999999998 888778999999999999999998 89999999999999999999998 888 78999999999


Q ss_pred             hcccccceee
Q 035742          126 HFQFNQLKLL  135 (214)
Q Consensus       126 ~l~~N~l~g~  135 (214)
                      |++.|+++..
T Consensus       458 DlS~N~L~~~  467 (1081)
T KOG0618|consen  458 DLSCNNLSEV  467 (1081)
T ss_pred             ecccchhhhh
Confidence            9999998753

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.55  E-value=1.4e-08  Score=88.04  Aligned_cols=87  Identities=20%  Similarity=0.201  Sum_probs=70.4

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+++.|+|+.|+++..-. ..+.+++.|+.|++++|.|...-+..+...++|++|+|++|+++...+..|..+..|++|+
T Consensus       269 ~kme~l~L~~N~l~~vn~-g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln  347 (873)
T KOG4194|consen  269 EKMEHLNLETNRLQAVNE-GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN  347 (873)
T ss_pred             cccceeecccchhhhhhc-ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence            367888888888884434 7788888888888888888878888888888888888888888855666788888888888


Q ss_pred             ccccccee
Q 035742          127 FQFNQLKL  134 (214)
Q Consensus       127 l~~N~l~g  134 (214)
                      |++|.+..
T Consensus       348 Ls~Nsi~~  355 (873)
T KOG4194|consen  348 LSHNSIDH  355 (873)
T ss_pred             ccccchHH
Confidence            88888764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.49  E-value=4e-08  Score=86.13  Aligned_cols=83  Identities=25%  Similarity=0.394  Sum_probs=71.2

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhh-hhCCcccceeeccccccccCCCccccccccchhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQ-IGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..|+.|||++|.++ ..| ..+....++-.|+||+|+|. .+|.. +.+++.|-+||||+|++. .+|+.+..+..|++|
T Consensus       103 ~dLt~lDLShNqL~-EvP-~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL  178 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLR-EVP-TNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL  178 (1255)
T ss_pred             ccceeeecchhhhh-hcc-hhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence            46888999999998 888 88888889999999999998 66655 668899999999999998 888888999999999


Q ss_pred             hcccccce
Q 035742          126 HFQFNQLK  133 (214)
Q Consensus       126 ~l~~N~l~  133 (214)
                      .|++|.+.
T Consensus       179 ~Ls~NPL~  186 (1255)
T KOG0444|consen  179 KLSNNPLN  186 (1255)
T ss_pred             hcCCChhh
Confidence            99999764

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.34  E-value=6.7e-08  Score=83.56  Aligned_cols=87  Identities=26%  Similarity=0.418  Sum_probs=63.7

Q ss_pred             EEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhccccc
Q 035742           52 ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQ  131 (214)
Q Consensus        52 L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~  131 (214)
                      +.|..|.+. .+| ..+.++..|++|+|+.|+++ .+|..+..|+ |+.|.+++|+++ .+|..++.+..|..|+.+.|+
T Consensus       103 liLy~n~~r-~ip-~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~ne  177 (722)
T KOG0532|consen  103 LILYHNCIR-TIP-EAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNE  177 (722)
T ss_pred             HHHHhccce-ecc-hhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhh
Confidence            344445554 566 66777788888888888887 7777777777 788888888887 788888877788888888888


Q ss_pred             ceeecchhhhhc
Q 035742          132 LKLLVLVLEVIK  143 (214)
Q Consensus       132 l~g~~p~~~~l~  143 (214)
                      +...++.+..+.
T Consensus       178 i~slpsql~~l~  189 (722)
T KOG0532|consen  178 IQSLPSQLGYLT  189 (722)
T ss_pred             hhhchHHhhhHH
Confidence            877666544443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.33  E-value=3.1e-07  Score=83.85  Aligned_cols=61  Identities=26%  Similarity=0.266  Sum_probs=40.4

Q ss_pred             CCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742           73 QLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus        73 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~  138 (214)
                      +|+.|++++|.++ .+|..   ..+|+.|++++|+|+ .+|..+.++++|+.|+|++|+|++.+|.
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            4555555555555 34432   234666777777777 6777777788888888888888877654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=1.4e-07  Score=67.89  Aligned_cols=84  Identities=24%  Similarity=0.386  Sum_probs=68.4

Q ss_pred             CCCeEEEEecCCCCccccCccccC-CCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFS-SFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV  124 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~  124 (214)
                      .-+|+.++|++|.+. .+| +.|. .++.++.|++++|.++ .+|.++..++.|+.++++.|.|. ..|.-+..+.+|..
T Consensus        52 ~~el~~i~ls~N~fk-~fp-~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-KFP-KKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM  127 (177)
T ss_pred             CceEEEEecccchhh-hCC-HHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence            346788889999888 777 5554 4568888999999988 78888888999999999999888 78888888888888


Q ss_pred             hhcccccce
Q 035742          125 LHFQFNQLK  133 (214)
Q Consensus       125 L~l~~N~l~  133 (214)
                      |+..+|.+.
T Consensus       128 Lds~~na~~  136 (177)
T KOG4579|consen  128 LDSPENARA  136 (177)
T ss_pred             hcCCCCccc
Confidence            888888765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.26  E-value=2.5e-07  Score=76.93  Aligned_cols=86  Identities=22%  Similarity=0.211  Sum_probs=55.6

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|+|++|.|++.-+ .+|.++..++.|.|..|++...-...|.++..|+.|+|.+|+|+-.-|..|..+.+|.+|+
T Consensus       274 ~~L~~lnlsnN~i~~i~~-~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~  352 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIED-GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN  352 (498)
T ss_pred             ccceEeccCCCccchhhh-hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence            466666777777664444 6666677777777777766644444566666677777777777656666666666666666


Q ss_pred             cccccce
Q 035742          127 FQFNQLK  133 (214)
Q Consensus       127 l~~N~l~  133 (214)
                      |-.|.|.
T Consensus       353 l~~Np~~  359 (498)
T KOG4237|consen  353 LLSNPFN  359 (498)
T ss_pred             hccCccc
Confidence            6666553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.26  E-value=1.4e-07  Score=85.44  Aligned_cols=100  Identities=26%  Similarity=0.485  Sum_probs=85.9

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|.+|++++|.+. ..| ..+..+..|+.|+++.|-+. ..|.+..++.+|+++.|..|++. .+|.++..+.+|++|++
T Consensus        46 ~L~~l~lsnn~~~-~fp-~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ldl  121 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-SFP-IQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDL  121 (1081)
T ss_pred             eeEEeeccccccc-cCC-chhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccccccc
Confidence            4899999999987 888 88999999999999999998 88899999999999999999998 99999999999999999


Q ss_pred             ccccceeecchhhhhcCCCCchhh
Q 035742          128 QFNQLKLLVLVLEVIKGKHPRDFL  151 (214)
Q Consensus       128 ~~N~l~g~~p~~~~l~g~~p~~~~  151 (214)
                      +.|+|.-.++.++.++-..-..++
T Consensus       122 S~N~f~~~Pl~i~~lt~~~~~~~s  145 (1081)
T KOG0618|consen  122 SFNHFGPIPLVIEVLTAEEELAAS  145 (1081)
T ss_pred             chhccCCCchhHHhhhHHHHHhhh
Confidence            999998666655544443333333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.24  E-value=1e-06  Score=51.09  Aligned_cols=36  Identities=36%  Similarity=0.575  Sum_probs=17.1

Q ss_pred             CCcEEeCcCCcCcCCChhhhhCCcccceeeccccccc
Q 035742           73 QLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS  109 (214)
Q Consensus        73 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  109 (214)
                      +|++|++++|+|+ .+|+.++++++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555554 34444555555555555555544

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.15  E-value=3.8e-07  Score=73.65  Aligned_cols=57  Identities=25%  Similarity=0.361  Sum_probs=31.7

Q ss_pred             eEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccc
Q 035742           49 VINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS  109 (214)
Q Consensus        49 L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  109 (214)
                      |+.+||++|.|+ .+. ++..-++.++.|++++|.+. .+ ..+..+++|+.||||+|.++
T Consensus       286 LtelDLS~N~I~-~iD-ESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QID-ESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hhhccccccchh-hhh-hhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH
Confidence            555666666655 444 55555556666666666554 22 23555556666666666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=8.8e-07  Score=51.32  Aligned_cols=39  Identities=26%  Similarity=0.455  Sum_probs=33.6

Q ss_pred             cccceeeccccccccCCCccccccccchhhhcccccceee
Q 035742           96 SKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLL  135 (214)
Q Consensus        96 ~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~  135 (214)
                      ++|++|++++|+|+ .+|..++++++|+.|++++|+++..
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence            47999999999999 7888899999999999999999843

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.14  E-value=3.1e-06  Score=77.50  Aligned_cols=79  Identities=22%  Similarity=0.385  Sum_probs=54.3

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|++++|.++ .+| ..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|.|+ .+|..+.  ..|+.|+
T Consensus       325 ~sL~~L~Ls~N~Lt-~LP-~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~Ld  394 (754)
T PRK15370        325 PGLKTLEAGENALT-SLP-ASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQ  394 (754)
T ss_pred             ccceeccccCCccc-cCC-hhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHh
Confidence            35777777777776 466 4443  57788888888776 5665553  57788888888887 5666553  3577888


Q ss_pred             cccccceee
Q 035742          127 FQFNQLKLL  135 (214)
Q Consensus       127 l~~N~l~g~  135 (214)
                      +++|+|++.
T Consensus       395 Ls~N~L~~L  403 (754)
T PRK15370        395 ASRNNLVRL  403 (754)
T ss_pred             hccCCcccC
Confidence            888887744

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.07  E-value=5.2e-06  Score=76.03  Aligned_cols=13  Identities=15%  Similarity=0.340  Sum_probs=6.8

Q ss_pred             CeEEEEecCCCCc
Q 035742           48 RVINISLRNTGLS   60 (214)
Q Consensus        48 ~L~~L~L~~n~l~   60 (214)
                      +|+.|+|++|.|+
T Consensus       343 ~Lq~LdLS~N~Ls  355 (788)
T PRK15387        343 GLQELSVSDNQLA  355 (788)
T ss_pred             ccceEecCCCccC
Confidence            3455555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.04  E-value=2.8e-06  Score=72.33  Aligned_cols=88  Identities=26%  Similarity=0.348  Sum_probs=68.8

Q ss_pred             CCeEEEEecCCCCccccCccccCCCC-CCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFP-QLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..++.|++.+|.++ .++ +....+. +|+.|++++|.+. .+|..+..++.|+.|++++|+++ .+|...+.++.|+.|
T Consensus       116 ~~l~~L~l~~n~i~-~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIP-PLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccc-cCc-cccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            46788888888888 677 6666664 8888888888887 67677888888888888888888 777766677888888


Q ss_pred             hcccccceeecch
Q 035742          126 HFQFNQLKLLVLV  138 (214)
Q Consensus       126 ~l~~N~l~g~~p~  138 (214)
                      ++++|+++-..+.
T Consensus       192 ~ls~N~i~~l~~~  204 (394)
T COG4886         192 DLSGNKISDLPPE  204 (394)
T ss_pred             eccCCccccCchh
Confidence            8888888765554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.04  E-value=5.5e-06  Score=75.91  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=17.6

Q ss_pred             ccceeeccccccccCCCccccccccchhhhccccccee
Q 035742           97 KLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKL  134 (214)
Q Consensus        97 ~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g  134 (214)
                      +|+.|++++|+++ .+|..+.  .+|+.|++++|+|++
T Consensus       263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT  297 (754)
T ss_pred             CCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc
Confidence            4555555555555 3444332  245555555555543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.02  E-value=2.3e-06  Score=72.92  Aligned_cols=97  Identities=28%  Similarity=0.464  Sum_probs=80.6

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|+.|++++|.+. .+| ..+..++.|+.|++++|++. .+|...+.++.|+.|++++|+++ .+|..+.....|+++.+
T Consensus       141 nL~~L~l~~N~i~-~l~-~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~  216 (394)
T COG4886         141 NLKELDLSDNKIE-SLP-SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL  216 (394)
T ss_pred             hcccccccccchh-hhh-hhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence            7999999999998 776 68999999999999999998 78877779999999999999999 88887777778999999


Q ss_pred             ccccceeecchhhhhcCCCCc
Q 035742          128 QFNQLKLLVLVLEVIKGKHPR  148 (214)
Q Consensus       128 ~~N~l~g~~p~~~~l~g~~p~  148 (214)
                      ++|.+...+..+..+....+.
T Consensus       217 ~~N~~~~~~~~~~~~~~l~~l  237 (394)
T COG4886         217 SNNSIIELLSSLSNLKNLSGL  237 (394)
T ss_pred             cCCcceecchhhhhccccccc
Confidence            999655555544444433333

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.96  E-value=2.4e-06  Score=70.28  Aligned_cols=38  Identities=24%  Similarity=0.354  Sum_probs=16.3

Q ss_pred             CCCcEEeCcCCcCcCC----ChhhhhCCcccceeeccccccc
Q 035742           72 PQLVHLDLSLNGFLGT----IPSQIGNLSKLSYISLQSNQLS  109 (214)
Q Consensus        72 ~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~  109 (214)
                      ++|+.|++++|.+++.    ++..+..+++|+.|++++|.++
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            4445555555544421    1222333344444444444444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.95  E-value=2.9e-06  Score=68.66  Aligned_cols=90  Identities=23%  Similarity=0.235  Sum_probs=62.8

Q ss_pred             cceeeeCC-----CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCC
Q 035742           38 WFGISCSD-----AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKI  112 (214)
Q Consensus        38 w~gv~c~~-----~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~  112 (214)
                      +.-++|.+     ...++.|++++|+|. .+.  .+..+++|+.|||++|.++ .+...-..+.+.+.|.|+.|.+. .+
T Consensus       293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L  367 (490)
T KOG1259|consen  293 GNLITQIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL  367 (490)
T ss_pred             ccchhhhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh
Confidence            34456643     347999999999998 554  5899999999999999987 44444445666667777777664 22


Q ss_pred             Cccccccccchhhhcccccce
Q 035742          113 PLEVGLLTHLKVLHFQFNQLK  133 (214)
Q Consensus       113 p~~~~~l~~L~~L~l~~N~l~  133 (214)
                       ..++++-+|..||+++|++.
T Consensus       368 -SGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  368 -SGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             -hhhHhhhhheeccccccchh
Confidence             33556666666777777664

>PLN03210 Resistant to P

Probab=97.93  E-value=1.3e-05  Score=77.10  Aligned_cols=81  Identities=19%  Similarity=0.270  Sum_probs=43.5

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|+.|++.+|.+. .++ ..+..+++|+.|+++++...+.+| .+..+++|+.|++++|.....+|..++++++|+.|++
T Consensus       612 ~L~~L~L~~s~l~-~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L  688 (1153)
T PLN03210        612 NLVKLQMQGSKLE-KLW-DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM  688 (1153)
T ss_pred             CCcEEECcCcccc-ccc-cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence            4555666655555 444 445555566666665544333444 3555555555555555443455555555555555555


Q ss_pred             cccc
Q 035742          128 QFNQ  131 (214)
Q Consensus       128 ~~N~  131 (214)
                      ++|.
T Consensus       689 ~~c~  692 (1153)
T PLN03210        689 SRCE  692 (1153)
T ss_pred             CCCC
Confidence            5543

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=97.92  E-value=1.6e-05  Score=76.63  Aligned_cols=95  Identities=23%  Similarity=0.215  Sum_probs=72.3

Q ss_pred             cceeeeCCCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCcccc
Q 035742           38 WFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVG  117 (214)
Q Consensus        38 w~gv~c~~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~  117 (214)
                      |.|+.+  ..+|+.|+|+++...+.+|  .+..+++|+.|++++|.....+|..+.++++|+.|++++|..-..+|..+ 
T Consensus       627 ~~~~~~--l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-  701 (1153)
T PLN03210        627 WDGVHS--LTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-  701 (1153)
T ss_pred             cccccc--CCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence            555532  3579999999876555777  58889999999999987667899999999999999999875545788765 


Q ss_pred             ccccchhhhcccccceeecc
Q 035742          118 LLTHLKVLHFQFNQLKLLVL  137 (214)
Q Consensus       118 ~l~~L~~L~l~~N~l~g~~p  137 (214)
                      ++++|+.|++++|...+.+|
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p  721 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFP  721 (1153)
T ss_pred             CCCCCCEEeCCCCCCccccc
Confidence            67777777777765444443

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.88  E-value=2.4e-06  Score=74.21  Aligned_cols=36  Identities=28%  Similarity=0.523  Sum_probs=20.2

Q ss_pred             cceeeccccccccCCCccccccccchhhhccccccee
Q 035742           98 LSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKL  134 (214)
Q Consensus        98 L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g  134 (214)
                      |..||++.|+++ .+|..|.+|+.|++|-|.+|.+..
T Consensus       213 Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  213 LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            345555555555 555555555556655555555543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.86  E-value=2.8e-06  Score=69.92  Aligned_cols=88  Identities=20%  Similarity=0.239  Sum_probs=63.5

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCC---CcEEeCcCCcCcC----CChhhhhCC-cccceeeccccccccC----CC
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQ---LVHLDLSLNGFLG----TIPSQIGNL-SKLSYISLQSNQLSGK----IP  113 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~---L~~L~l~~n~l~~----~~p~~~~~l-~~L~~L~ls~N~l~g~----~p  113 (214)
                      ..+|+.|++++|.+.+..+ ..+..+..   |+.|++++|.+++    .+...+..+ ++|+.|++++|.+++.    ++
T Consensus        80 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          80 GCGLQELDLSDNALGPDGC-GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             cCceeEEEccCCCCChhHH-HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            4578999999988875555 55555555   9999999988873    233445666 8889999999988743    23


Q ss_pred             ccccccccchhhhccccccee
Q 035742          114 LEVGLLTHLKVLHFQFNQLKL  134 (214)
Q Consensus       114 ~~~~~l~~L~~L~l~~N~l~g  134 (214)
                      ..+..+++|++|++++|.+++
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~  179 (319)
T cd00116         159 KALRANRDLKELNLANNGIGD  179 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCch
Confidence            345566778888888888874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.85  E-value=9.3e-07  Score=63.65  Aligned_cols=94  Identities=27%  Similarity=0.443  Sum_probs=75.2

Q ss_pred             eeCCCCCeEEEEecCCCCccccCc--cccCCCCCCcEEeCcCCcCcCCChhhhhC-CcccceeeccccccccCCCccccc
Q 035742           42 SCSDAGRVINISLRNTGLSGTLSD--FSFSSFPQLVHLDLSLNGFLGTIPSQIGN-LSKLSYISLQSNQLSGKIPLEVGL  118 (214)
Q Consensus        42 ~c~~~~~L~~L~L~~n~l~g~~p~--~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-l~~L~~L~ls~N~l~g~~p~~~~~  118 (214)
                      +|.+...+..++|+++.+- .+++  -.+.....|+.++|++|.+. .+|+.|.. .+.++.+++++|.++ .+|..+..
T Consensus        22 rcedakE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa   98 (177)
T KOG4579|consen   22 RCEDAKELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAA   98 (177)
T ss_pred             hhHHHHHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhh
Confidence            3655556788899998875 5551  23456677888899999998 67777765 458999999999999 99999999


Q ss_pred             cccchhhhcccccceeecch
Q 035742          119 LTHLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus       119 l~~L~~L~l~~N~l~g~~p~  138 (214)
                      ++.|+.|+++.|.|.-.+-.
T Consensus        99 m~aLr~lNl~~N~l~~~p~v  118 (177)
T KOG4579|consen   99 MPALRSLNLRFNPLNAEPRV  118 (177)
T ss_pred             hHHhhhcccccCccccchHH
Confidence            99999999999999865543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.82  E-value=9.5e-06  Score=75.55  Aligned_cols=89  Identities=30%  Similarity=0.425  Sum_probs=76.6

Q ss_pred             CCeEEEEecCCC--CccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742           47 GRVINISLRNTG--LSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV  124 (214)
Q Consensus        47 ~~L~~L~L~~n~--l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~  124 (214)
                      ..+++|-+..|.  +. .++...|..++.|+.|||++|.=-+.+|..++.+-+|++|++++..++ .+|..++++..|.+
T Consensus       545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            368999999996  55 555356888999999999998777799999999999999999999999 99999999999999


Q ss_pred             hhcccccceeecc
Q 035742          125 LHFQFNQLKLLVL  137 (214)
Q Consensus       125 L~l~~N~l~g~~p  137 (214)
                      |++..+.....+|
T Consensus       623 Lnl~~~~~l~~~~  635 (889)
T KOG4658|consen  623 LNLEVTGRLESIP  635 (889)
T ss_pred             ecccccccccccc
Confidence            9999876544443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.51  E-value=4.7e-05  Score=71.04  Aligned_cols=85  Identities=28%  Similarity=0.325  Sum_probs=74.0

Q ss_pred             CCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742           45 DAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV  124 (214)
Q Consensus        45 ~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~  124 (214)
                      ....|+.|||++|.=-+.+| ..++.|-+|++|++++..+. .+|..++++..|.+|++.++.....+|..+..+++|++
T Consensus       569 ~m~~LrVLDLs~~~~l~~LP-~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~  646 (889)
T KOG4658|consen  569 SLPLLRVLDLSGNSSLSKLP-SSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV  646 (889)
T ss_pred             hCcceEEEECCCCCccCcCC-hHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence            35689999999987767899 99999999999999999998 99999999999999999988766566666677999999


Q ss_pred             hhccccc
Q 035742          125 LHFQFNQ  131 (214)
Q Consensus       125 L~l~~N~  131 (214)
                      |.+..-.
T Consensus       647 L~l~~s~  653 (889)
T KOG4658|consen  647 LRLPRSA  653 (889)
T ss_pred             EEeeccc
Confidence            8886544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.46  E-value=7.1e-05  Score=64.38  Aligned_cols=85  Identities=24%  Similarity=0.295  Sum_probs=57.8

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+++.|++..|.|. .+. ..+..+++|++|++++|.|+...  .+..++.|+.|++++|.++ .+.. +..+..|+.++
T Consensus        95 ~~l~~l~l~~n~i~-~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~~-~~~l~~L~~l~  168 (414)
T KOG0531|consen   95 KSLEALDLYDNKIE-KIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DISG-LESLKSLKLLD  168 (414)
T ss_pred             cceeeeeccccchh-hcc-cchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hccC-Cccchhhhccc
Confidence            46777888888887 444 23677888888888888886332  3555666778888888776 4332 45567777777


Q ss_pred             cccccceeecc
Q 035742          127 FQFNQLKLLVL  137 (214)
Q Consensus       127 l~~N~l~g~~p  137 (214)
                      +++|++...-+
T Consensus       169 l~~n~i~~ie~  179 (414)
T KOG0531|consen  169 LSYNRIVDIEN  179 (414)
T ss_pred             CCcchhhhhhh
Confidence            77777765444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.30  E-value=2.6e-05  Score=69.83  Aligned_cols=80  Identities=24%  Similarity=0.399  Sum_probs=45.7

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhh-hhCCcccceeeccccccccCCCccccccccchhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQ-IGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..++.|+|++|+++ ..  ..+..++.|++|||++|.+. .+|.- ...+. |+.|.+.+|.++ .+ ..+.++.+|+.|
T Consensus       187 ~ale~LnLshNk~~-~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~L  259 (1096)
T KOG1859|consen  187 PALESLNLSHNKFT-KV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGL  259 (1096)
T ss_pred             HHhhhhccchhhhh-hh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhcc
Confidence            36778888888887 33  46778888888888888886 44431 22222 444444444443 11 223444445555


Q ss_pred             hcccccce
Q 035742          126 HFQFNQLK  133 (214)
Q Consensus       126 ~l~~N~l~  133 (214)
                      |++.|-++
T Consensus       260 DlsyNll~  267 (1096)
T KOG1859|consen  260 DLSYNLLS  267 (1096)
T ss_pred             chhHhhhh
Confidence            55555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.21  E-value=0.00032  Score=53.85  Aligned_cols=82  Identities=21%  Similarity=0.216  Sum_probs=65.5

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCC--ccccccccchhh
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIP--LEVGLLTHLKVL  125 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~~L~~L  125 (214)
                      ....+||++|.+. .+  +.|..++.|..|.+.+|+|+..-|.--..+++|..|.+.+|.|. .+-  .-+..++.|++|
T Consensus        43 ~~d~iDLtdNdl~-~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccceecccccchh-hc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence            4678999999987 54  47899999999999999999555544456788999999999987 332  235677889999


Q ss_pred             hcccccce
Q 035742          126 HFQFNQLK  133 (214)
Q Consensus       126 ~l~~N~l~  133 (214)
                      .+-+|..+
T Consensus       119 tll~Npv~  126 (233)
T KOG1644|consen  119 TLLGNPVE  126 (233)
T ss_pred             eecCCchh
Confidence            99999775

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.15  E-value=2.7e-05  Score=69.78  Aligned_cols=83  Identities=27%  Similarity=0.349  Sum_probs=66.6

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      .|...+.++|.+. .+. .++.-++.|+.|+|++|+++. .. .+..++.|++|||++|.+. .+|..-..-..|+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD-~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMD-ESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHH-HHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence            4677788889887 666 888899999999999999973 33 7889999999999999998 77763222234999999


Q ss_pred             ccccceee
Q 035742          128 QFNQLKLL  135 (214)
Q Consensus       128 ~~N~l~g~  135 (214)
                      .+|.++..
T Consensus       240 rnN~l~tL  247 (1096)
T KOG1859|consen  240 RNNALTTL  247 (1096)
T ss_pred             cccHHHhh
Confidence            99988753

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.98  E-value=0.00044  Score=54.85  Aligned_cols=83  Identities=25%  Similarity=0.309  Sum_probs=65.1

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCC--cCcCCChhhhhCCcccceeeccccccccCCCcc---cccccc
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLN--GFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLE---VGLLTH  121 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~---~~~l~~  121 (214)
                      ..+..+.+.+..++ ++  ..|..+++|+.|.++.|  ++.+.++.-...+++|++++++.|++.-  +.+   +..+.+
T Consensus        43 ~~le~ls~~n~glt-t~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~n  117 (260)
T KOG2739|consen   43 VELELLSVINVGLT-TL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELEN  117 (260)
T ss_pred             cchhhhhhhcccee-ec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcc
Confidence            46777777777777 33  46888999999999999  7777777777778999999999999972  333   456677


Q ss_pred             chhhhccccccee
Q 035742          122 LKVLHFQFNQLKL  134 (214)
Q Consensus       122 L~~L~l~~N~l~g  134 (214)
                      |..|++..+..+.
T Consensus       118 L~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  118 LKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhhcccCCccc
Confidence            8899998886654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.95  E-value=0.00025  Score=61.02  Aligned_cols=82  Identities=23%  Similarity=0.248  Sum_probs=65.9

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      .+..+.+..|.++ .+- ..+..+.+|+.|++..|.|. .+...+..+++|++|++++|.|+...+  +..++.|+.|++
T Consensus        73 ~l~~l~l~~n~i~-~~~-~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l  147 (414)
T KOG0531|consen   73 SLKELNLRQNLIA-KIL-NHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL  147 (414)
T ss_pred             hHHhhccchhhhh-hhh-cccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence            4556668888887 333 56889999999999999998 444447889999999999999984433  667788999999


Q ss_pred             cccccee
Q 035742          128 QFNQLKL  134 (214)
Q Consensus       128 ~~N~l~g  134 (214)
                      ++|.++.
T Consensus       148 ~~N~i~~  154 (414)
T KOG0531|consen  148 SGNLISD  154 (414)
T ss_pred             ccCcchh
Confidence            9999874

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.00025  Score=60.07  Aligned_cols=88  Identities=19%  Similarity=0.149  Sum_probs=47.3

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCCh-hhhhCCcccceeeccccccccCCCccccccccchh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIP-SQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV  124 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~  124 (214)
                      ..+|+.|+|+.|.+.-......-..+++|+.|.++.+.++..-- .....+++|+.|+|..|...+..-.....+..|+.
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            34555666666655422221112234555666666665552211 12334567777777777533333334455677888


Q ss_pred             hhcccccce
Q 035742          125 LHFQFNQLK  133 (214)
Q Consensus       125 L~l~~N~l~  133 (214)
                      |+|++|++-
T Consensus       251 LdLs~N~li  259 (505)
T KOG3207|consen  251 LDLSNNNLI  259 (505)
T ss_pred             ccccCCccc
Confidence            888888764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.80  E-value=4.2e-05  Score=59.90  Aligned_cols=84  Identities=24%  Similarity=0.214  Sum_probs=76.5

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+++.||++.|.+. .+. ..|+.++.|..|+++.|++. .+|..++.+..+..+++..|.++ ..|.+++.+++++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~-~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLG-KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             cceeeeehhhhhHHH-hhc-cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            457899999999987 666 78999999999999999998 89999999999999999999998 999999999999999


Q ss_pred             hcccccce
Q 035742          126 HFQFNQLK  133 (214)
Q Consensus       126 ~l~~N~l~  133 (214)
                      ++-.|.|.
T Consensus       117 e~k~~~~~  124 (326)
T KOG0473|consen  117 EQKKTEFF  124 (326)
T ss_pred             hhccCcch
Confidence            99998864

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.57  E-value=0.0034  Score=53.12  Aligned_cols=75  Identities=29%  Similarity=0.509  Sum_probs=51.8

Q ss_pred             hhhhhcCCCCchhhh--------hhcccccchhhhhhhhcCCCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHH
Q 035742          138 VLEVIKGKHPRDFLC--------SILSSSLTKDVALDEMLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVS  209 (214)
Q Consensus       138 ~~~~l~g~~p~~~~~--------~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~  209 (214)
                      .++.++|..+.+...        .|. ........+.+++|+++..........+.++..+|+.|++.++..||+|.+|+
T Consensus       268 llElitgr~~~d~~~~~~~~~l~~w~-~~~~~~~~~~eiiD~~l~~~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv  346 (361)
T KOG1187|consen  268 LLELITGRKAVDQSRPRGELSLVEWA-KPLLEEGKLREIVDPRLKEGEYPDEKEVKKLAELALRCLRPDPKERPTMSQVV  346 (361)
T ss_pred             HHHHHhCCcccCCCCCcccccHHHHH-HHHHHCcchhheeCCCccCCCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHH
Confidence            367888887666421        111 11122225678889888742222126778899999999999999999999999


Q ss_pred             HHhc
Q 035742          210 QQLQ  213 (214)
Q Consensus       210 ~~L~  213 (214)
                      ++|+
T Consensus       347 ~~L~  350 (361)
T KOG1187|consen  347 KELE  350 (361)
T ss_pred             HHHH
Confidence            9985

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.00064  Score=57.71  Aligned_cols=84  Identities=20%  Similarity=0.248  Sum_probs=43.3

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCCh--hhhhCCcccceeeccccccccC-CCcc-----cccc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIP--SQIGNLSKLSYISLQSNQLSGK-IPLE-----VGLL  119 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~ls~N~l~g~-~p~~-----~~~l  119 (214)
                      ++..|+|.+|...+... .....+..|+.|||++|++- ..+  ...+.++.|+.|+++.+.+... +|+.     ...+
T Consensus       223 sl~~L~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKA-TSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             cHHHhhhhcccccceec-chhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence            35555555553221222 33444556666666666654 233  3455566666666666665422 2322     2344


Q ss_pred             ccchhhhcccccce
Q 035742          120 THLKVLHFQFNQLK  133 (214)
Q Consensus       120 ~~L~~L~l~~N~l~  133 (214)
                      .+|++|++..|++.
T Consensus       301 ~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  301 PKLEYLNISENNIR  314 (505)
T ss_pred             ccceeeecccCccc
Confidence            56667777766663

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.00096  Score=54.28  Aligned_cols=84  Identities=25%  Similarity=0.255  Sum_probs=50.6

Q ss_pred             CeEEEEecCCCCccc--cCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccC-CCccccccccchh
Q 035742           48 RVINISLRNTGLSGT--LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK-IPLEVGLLTHLKV  124 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~--~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~  124 (214)
                      +++.+||.+|.|+..  +. .-+..++.|+.|+++.|++...+-.....+.+|+.|-|.+..+.+. ....+..++.++.
T Consensus        72 ~v~elDL~~N~iSdWseI~-~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIG-AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhcccchhccHHHHH-HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            567777777777621  22 3345677778888887777633322223455677777766666543 2334456666777


Q ss_pred             hhcccccc
Q 035742          125 LHFQFNQL  132 (214)
Q Consensus       125 L~l~~N~l  132 (214)
                      |+++.|++
T Consensus       151 lHmS~N~~  158 (418)
T KOG2982|consen  151 LHMSDNSL  158 (418)
T ss_pred             hhhccchh
Confidence            77777743

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.27  E-value=0.0014  Score=31.73  Aligned_cols=18  Identities=39%  Similarity=0.737  Sum_probs=8.5

Q ss_pred             cceeeccccccccCCCccc
Q 035742           98 LSYISLQSNQLSGKIPLEV  116 (214)
Q Consensus        98 L~~L~ls~N~l~g~~p~~~  116 (214)
                      |++|++++|+|+ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444455555444 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.17  E-value=0.00036  Score=56.16  Aligned_cols=86  Identities=23%  Similarity=0.289  Sum_probs=38.5

Q ss_pred             eCCCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCC--ccccccc
Q 035742           43 CSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIP--LEVGLLT  120 (214)
Q Consensus        43 c~~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~  120 (214)
                      |++..++..|+.-+++|. .|.  -...++.|+.|.|+-|.|+..  ..+..|++|++|+|..|.|. .+-  ..+.+++
T Consensus        15 ~sdl~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlp   88 (388)
T KOG2123|consen   15 CSDLENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLP   88 (388)
T ss_pred             hhHHHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence            333334445555555444 221  234455555555555555421  12444555555555555544 222  1234445


Q ss_pred             cchhhhccccccee
Q 035742          121 HLKVLHFQFNQLKL  134 (214)
Q Consensus       121 ~L~~L~l~~N~l~g  134 (214)
                      +|+.|.|..|.-.|
T Consensus        89 sLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   89 SLRTLWLDENPCCG  102 (388)
T ss_pred             hhhhHhhccCCccc
Confidence            55555555554433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.10  E-value=0.002  Score=31.22  Aligned_cols=18  Identities=50%  Similarity=0.589  Sum_probs=8.3

Q ss_pred             CcEEeCcCCcCcCCChhhh
Q 035742           74 LVHLDLSLNGFLGTIPSQI   92 (214)
Q Consensus        74 L~~L~l~~n~l~~~~p~~~   92 (214)
                      |++|++++|+++ .+|+.|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444445544444 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.02  E-value=0.0045  Score=47.67  Aligned_cols=79  Identities=20%  Similarity=0.305  Sum_probs=56.9

Q ss_pred             EEEEecCCCCccccCccccC-CCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcc
Q 035742           50 INISLRNTGLSGTLSDFSFS-SFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQ  128 (214)
Q Consensus        50 ~~L~L~~n~l~g~~p~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~  128 (214)
                      ++++|.+..+. .+.  .++ -+.....+||++|.+.  .-..|..+++|.+|.+++|+|+.+-|.--..+++|..|.+.
T Consensus        22 ~e~~LR~lkip-~ie--nlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   22 RELDLRGLKIP-VIE--NLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccc-chh--hccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            56677766554 222  222 2346788999999985  33467789999999999999995555433445679999999


Q ss_pred             cccce
Q 035742          129 FNQLK  133 (214)
Q Consensus       129 ~N~l~  133 (214)
                      +|++.
T Consensus        97 nNsi~  101 (233)
T KOG1644|consen   97 NNSIQ  101 (233)
T ss_pred             Ccchh
Confidence            99876

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.68  E-value=0.006  Score=55.85  Aligned_cols=91  Identities=16%  Similarity=0.160  Sum_probs=54.2

Q ss_pred             eeeeCCCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcC-CChhhhhCCcccceeeccccccccCCC-----
Q 035742           40 GISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLG-TIPSQIGNLSKLSYISLQSNQLSGKIP-----  113 (214)
Q Consensus        40 gv~c~~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~g~~p-----  113 (214)
                      ..-|....+|.+||+++.+++ .+  ..++.+.+|+.|.+.+=.+.. ..-..+.+|++|+.||+|..... ..+     
T Consensus       166 ~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~q  241 (699)
T KOG3665|consen  166 SQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQ  241 (699)
T ss_pred             HHHhhccCccceeecCCCCcc-Cc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHH
Confidence            344555566777777777766 33  356666677666666555431 22235667777777777776654 222     


Q ss_pred             --ccccccccchhhhccccccee
Q 035742          114 --LEVGLLTHLKVLHFQFNQLKL  134 (214)
Q Consensus       114 --~~~~~l~~L~~L~l~~N~l~g  134 (214)
                        +.-..+++|++||.|++.+.+
T Consensus       242 Ylec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  242 YLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHHhcccCccccEEecCCcchhH
Confidence              122346777777777766554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.31  E-value=0.0019  Score=52.15  Aligned_cols=81  Identities=23%  Similarity=0.286  Sum_probs=62.9

Q ss_pred             eeCCCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChh--hhhCCcccceeeccccccccCCCcc----
Q 035742           42 SCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPS--QIGNLSKLSYISLQSNQLSGKIPLE----  115 (214)
Q Consensus        42 ~c~~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~ls~N~l~g~~p~~----  115 (214)
                      .|..-..|+.|.|+-|.|+ .+  ..|..+++|+.|+|..|.|. .+.+  -+.++++|+.|+|..|.-.|.-+..    
T Consensus        36 ic~kMp~lEVLsLSvNkIs-sL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~  111 (388)
T KOG2123|consen   36 ICEKMPLLEVLSLSVNKIS-SL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRK  111 (388)
T ss_pred             HHHhcccceeEEeeccccc-cc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHH
Confidence            3555567999999999999 44  35899999999999999997 3433  3678999999999999988776653    


Q ss_pred             -ccccccchhhh
Q 035742          116 -VGLLTHLKVLH  126 (214)
Q Consensus       116 -~~~l~~L~~L~  126 (214)
                       +.-|++|+.||
T Consensus       112 VLR~LPnLkKLD  123 (388)
T KOG2123|consen  112 VLRVLPNLKKLD  123 (388)
T ss_pred             HHHHcccchhcc
Confidence             34456666664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=94.95  E-value=0.0082  Score=49.75  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=16.4

Q ss_pred             cccceeecccccccc----CCCccccccccchhhhcccccc
Q 035742           96 SKLSYISLQSNQLSG----KIPLEVGLLTHLKVLHFQFNQL  132 (214)
Q Consensus        96 ~~L~~L~ls~N~l~g----~~p~~~~~l~~L~~L~l~~N~l  132 (214)
                      ++|+.+.+.+|.++-    .+-..+...+.|..|+|++|.+
T Consensus       270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            445555555554431    0112233344555555555555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.90  E-value=0.012  Score=46.81  Aligned_cols=66  Identities=27%  Similarity=0.342  Sum_probs=50.2

Q ss_pred             cccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeecccc--ccccCCCccccccccchhhhcccccce
Q 035742           66 FSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSN--QLSGKIPLEVGLLTHLKVLHFQFNQLK  133 (214)
Q Consensus        66 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N--~l~g~~p~~~~~l~~L~~L~l~~N~l~  133 (214)
                      .-...+..|+.|.+.+..++ .+ ..+..+++|+.|.++.|  .+.+.++.....+++|+++++++|++.
T Consensus        37 gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   37 GLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            44555667777777777665 11 24567889999999999  666667666677799999999999987

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.90  E-value=0.0094  Score=54.61  Aligned_cols=85  Identities=20%  Similarity=0.275  Sum_probs=59.9

Q ss_pred             CCCeEEEEecCCCCccc-cCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeecccccccc-CCCccccccccch
Q 035742           46 AGRVINISLRNTGLSGT-LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG-KIPLEVGLLTHLK  123 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~-~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~  123 (214)
                      ..+|++|.+.+-.+... +. .-..++++|..||+|+.+++..  ..++++++|+.|.+.+=.|.. ..-..+.+|++|+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             CcccceEEecCceecchhHH-HHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            34688888887766432 12 3456788999999999888733  678888888888877666652 1123467788999


Q ss_pred             hhhcccccce
Q 035742          124 VLHFQFNQLK  133 (214)
Q Consensus       124 ~L~l~~N~l~  133 (214)
                      .||+|.....
T Consensus       224 vLDIS~~~~~  233 (699)
T KOG3665|consen  224 VLDISRDKNN  233 (699)
T ss_pred             eeeccccccc
Confidence            9999876554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.18  E-value=0.024  Score=25.53  Aligned_cols=11  Identities=36%  Similarity=0.594  Sum_probs=3.3

Q ss_pred             cceeecccccc
Q 035742           98 LSYISLQSNQL  108 (214)
Q Consensus        98 L~~L~ls~N~l  108 (214)
                      |+.|++++|+|
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33444444443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.82  E-value=0.1  Score=44.89  Aligned_cols=60  Identities=13%  Similarity=0.242  Sum_probs=42.7

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCC-cCcCCChhhhhCCcccceeecccc-ccccCCCcc
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLN-GFLGTIPSQIGNLSKLSYISLQSN-QLSGKIPLE  115 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~ls~N-~l~g~~p~~  115 (214)
                      .+++.|+++++.|+ .+| .   -..+|+.|.++++ .++ .+|..+  ..+|+.|++++| .+. .+|..
T Consensus        52 ~~l~~L~Is~c~L~-sLP-~---LP~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~s  113 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLP-V---LPNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPES  113 (426)
T ss_pred             cCCCEEEeCCCCCc-ccC-C---CCCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-ccccc
Confidence            46889999999888 666 2   2346999999874 443 666554  357889999888 554 66654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.41  E-value=0.15  Score=25.34  Aligned_cols=14  Identities=50%  Similarity=0.603  Sum_probs=6.9

Q ss_pred             CCCcEEeCcCCcCc
Q 035742           72 PQLVHLDLSLNGFL   85 (214)
Q Consensus        72 ~~L~~L~l~~n~l~   85 (214)
                      ++|+.|++++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.41  E-value=0.15  Score=25.34  Aligned_cols=14  Identities=50%  Similarity=0.603  Sum_probs=6.9

Q ss_pred             CCCcEEeCcCCcCc
Q 035742           72 PQLVHLDLSLNGFL   85 (214)
Q Consensus        72 ~~L~~L~l~~n~l~   85 (214)
                      ++|+.|++++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34455555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.24  E-value=0.21  Score=35.01  Aligned_cols=79  Identities=18%  Similarity=0.219  Sum_probs=46.5

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|+.+.+.. .+. .++...|.+++.|+.+.+..+ +...-...|.++.+|+.+.+.. .+...-...|..+++|+.+++
T Consensus        13 ~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   13 NLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             T--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            678888874 566 565477888888999998775 6534445677887888888865 443233455677888888888


Q ss_pred             ccc
Q 035742          128 QFN  130 (214)
Q Consensus       128 ~~N  130 (214)
                      ..|
T Consensus        89 ~~~   91 (129)
T PF13306_consen   89 PSN   91 (129)
T ss_dssp             TTT
T ss_pred             Ccc
Confidence            665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=91.36  E-value=0.1  Score=43.47  Aligned_cols=86  Identities=20%  Similarity=0.278  Sum_probs=45.4

Q ss_pred             CCeEEEEecCCCCccc----cCccccCCCCCCcEEeCcCCcCcC----CChhhhhCCcccceeeccccccccC----CCc
Q 035742           47 GRVINISLRNTGLSGT----LSDFSFSSFPQLVHLDLSLNGFLG----TIPSQIGNLSKLSYISLQSNQLSGK----IPL  114 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~g~----~p~  114 (214)
                      ..|+++....|.+...    +. ..|...+.|+.+.+..|.|..    .+-..+..+++|+.|||..|.|+..    +..
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A-~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALA-EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             cceEEEEeeccccccccHHHHH-HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            4566666666665311    11 334455666666666665531    1223455666666666666666521    122


Q ss_pred             cccccccchhhhcccccce
Q 035742          115 EVGLLTHLKVLHFQFNQLK  133 (214)
Q Consensus       115 ~~~~l~~L~~L~l~~N~l~  133 (214)
                      .+..+++|+.++++++.++
T Consensus       236 aL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             Hhcccchheeecccccccc
Confidence            3444455666666665554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.13  E-value=0.12  Score=42.54  Aligned_cols=70  Identities=21%  Similarity=0.325  Sum_probs=51.5

Q ss_pred             ccceeeeC--CCCCeEEEEecCCCCccccCcccc-CCCCCCcEEeCcCCcCcCCChh-hhhCCcccceeecccccc
Q 035742           37 AWFGISCS--DAGRVINISLRNTGLSGTLSDFSF-SSFPQLVHLDLSLNGFLGTIPS-QIGNLSKLSYISLQSNQL  108 (214)
Q Consensus        37 ~w~gv~c~--~~~~L~~L~L~~n~l~g~~p~~~~-~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~ls~N~l  108 (214)
                      .|+-|.|.  ...+|+.|+|+.|.+...|.  .+ ..+.+|+.|-|.+..+....-. .+..++.++.|+++.|.+
T Consensus        85 dWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen   85 DWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             cHHHHHHHHhcCccceEeeccCCcCCCccc--cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            47766654  67799999999999985554  23 4567889999988887654443 456788888888888843

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=90.95  E-value=0.085  Score=42.76  Aligned_cols=84  Identities=17%  Similarity=0.270  Sum_probs=39.3

Q ss_pred             CCeEEEEecCCCCccccCc---cccCCCCCCcEEeCcCCcCcCC----Ch-------hhhhCCcccceeeccccccccCC
Q 035742           47 GRVINISLRNTGLSGTLSD---FSFSSFPQLVHLDLSLNGFLGT----IP-------SQIGNLSKLSYISLQSNQLSGKI  112 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~---~~~~~l~~L~~L~l~~n~l~~~----~p-------~~~~~l~~L~~L~ls~N~l~g~~  112 (214)
                      ..++.++|++|.|...-..   ..+.+-.+|+..+++.- ++|.    ++       +.+..|++|+..+||.|-|....
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            3567777777776522110   22333444555554432 1111    11       23334555566666666555444


Q ss_pred             Ccc----ccccccchhhhccccc
Q 035742          113 PLE----VGLLTHLKVLHFQFNQ  131 (214)
Q Consensus       113 p~~----~~~l~~L~~L~l~~N~  131 (214)
                      |+.    +++-+.|.+|.+++|.
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCC
Confidence            433    2333455555555553

>PRK15386 type III secretion protein GogB; Provisional

Probab=89.75  E-value=0.26  Score=42.41  Aligned_cols=61  Identities=15%  Similarity=0.158  Sum_probs=43.5

Q ss_pred             ccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccc-cccccCCCccccccccchhhhcccc-ccee
Q 035742           67 SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQS-NQLSGKIPLEVGLLTHLKVLHFQFN-QLKL  134 (214)
Q Consensus        67 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~l~~L~~L~l~~N-~l~g  134 (214)
                      .+..+.+++.|++++|.+. .+|   .-..+|+.|.+++ +.++ .+|..+.  .+|+.|++++| .+..
T Consensus        47 r~~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~s  109 (426)
T PRK15386         47 QIEEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEISG  109 (426)
T ss_pred             HHHHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCcccccc
Confidence            3445688999999999887 667   2334699999987 4554 6776542  57888888887 5544

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=88.88  E-value=0.5  Score=37.77  Aligned_cols=31  Identities=26%  Similarity=0.640  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          181 QEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       181 ~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      +..+.+++   ..|...+|.+||++++|.+.|++
T Consensus       252 ~~~~~~l~---~~c~~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05048         252 PARVYALM---IECWNEIPARRPRFKDIHTRLRS  282 (283)
T ss_pred             CHHHHHHH---HHHccCChhhCcCHHHHHHHHhc
Confidence            34444444   44999999999999999999974

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.50  E-value=0.022  Score=45.05  Aligned_cols=73  Identities=19%  Similarity=0.209  Sum_probs=60.8

Q ss_pred             ccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcccccceeec
Q 035742           62 TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLV  136 (214)
Q Consensus        62 ~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~  136 (214)
                      .+|--++..+...+.||++.|++. .+-..|..++.|..|+++.|++. .+|..++.+..+..+++..|.++-.+
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p  104 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQP  104 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCC
Confidence            344245667788899999999986 55567888899999999999998 89999999999999999999887543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=88.27  E-value=0.44  Score=33.36  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=45.4

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +++.+.+..+ +. .+++..|.+...++.+.+.. .+...-...|..+++|+.+.+..+ +...-...|.+. .|+.+.+
T Consensus        36 ~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~  110 (129)
T PF13306_consen   36 SLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINI  110 (129)
T ss_dssp             T-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred             cccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEE
Confidence            6889998875 66 66657788988899999976 443233445777999999998765 442334456665 6776666


Q ss_pred             cc
Q 035742          128 QF  129 (214)
Q Consensus       128 ~~  129 (214)
                      ..
T Consensus       111 ~~  112 (129)
T PF13306_consen  111 PS  112 (129)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=87.23  E-value=1  Score=36.25  Aligned_cols=25  Identities=16%  Similarity=0.456  Sum_probs=21.4

Q ss_pred             HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          189 GVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       189 ~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      .+...|...+|.+||+|.+|.++|+
T Consensus       256 ~li~~~l~~~P~~Rpt~~~v~~~l~  280 (291)
T cd05094         256 DIMLGCWQREPQQRLNIKEIYKILH  280 (291)
T ss_pred             HHHHHHcccChhhCcCHHHHHHHHH
Confidence            4444599999999999999999985

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=86.94  E-value=0.98  Score=36.25  Aligned_cols=28  Identities=21%  Similarity=0.490  Sum_probs=23.8

Q ss_pred             HHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          187 IMGVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      +..+...|++.+|.+||++.++++.|++
T Consensus       261 l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         261 LYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             HHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence            4455566999999999999999999975

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=86.85  E-value=0.49  Score=37.67  Aligned_cols=28  Identities=14%  Similarity=0.347  Sum_probs=23.6

Q ss_pred             HHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          187 IMGVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      +..+...|...+|.+||+|.+|+++|++
T Consensus       255 ~~~li~~cl~~~p~~Rpt~~ei~~~l~~  282 (284)
T cd05038         255 VYDLMKLCWEAEPQDRPSFADLILIVDR  282 (284)
T ss_pred             HHHHHHHHhccChhhCCCHHHHHHHHhh
Confidence            4455556999999999999999999973

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.83  E-value=0.17  Score=24.64  Aligned_cols=13  Identities=46%  Similarity=0.434  Sum_probs=5.2

Q ss_pred             CCcEEeCcCCcCc
Q 035742           73 QLVHLDLSLNGFL   85 (214)
Q Consensus        73 ~L~~L~l~~n~l~   85 (214)
                      +|+.|++++|.|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444455444443

...

>PHA02988 hypothetical protein; Provisional

Probab=86.19  E-value=1.5  Score=35.40  Aligned_cols=29  Identities=17%  Similarity=0.468  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |...+|.+||++.+|++.|+
T Consensus       249 ~~l~~li~~---cl~~dp~~Rps~~ell~~l~  277 (283)
T PHA02988        249 LEIKCIVEA---CTSHDSIKRPNIKEILYNLS  277 (283)
T ss_pred             HHHHHHHHH---HhcCCcccCcCHHHHHHHHH
Confidence            555555555   99999999999999999885

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=85.32  E-value=1.9  Score=33.93  Aligned_cols=29  Identities=28%  Similarity=0.541  Sum_probs=22.6

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++.   .|...+|.+||+|.+|.++++
T Consensus       235 ~~~~~li~---~~l~~~p~~Rpt~~~i~~~~~  263 (267)
T cd08229         235 EELRQLVN---MCINPDPEKRPDITYVYDVAK  263 (267)
T ss_pred             HHHHHHHH---HhcCCCcccCCCHHHHHHHHh
Confidence            44444444   499999999999998888875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=85.12  E-value=1.3  Score=35.19  Aligned_cols=30  Identities=23%  Similarity=0.442  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      ..+.+++..   |...+|.+||++.+|.++|++
T Consensus       251 ~~~~~li~~---~l~~~p~~Rp~~~eil~~l~~  280 (280)
T cd05049         251 SEVYDIMLG---CWKRDPQQRINIKDIHERLQK  280 (280)
T ss_pred             HHHHHHHHH---HcCCCcccCCCHHHHHHHhhC
Confidence            444444444   999999999999999999974

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=84.33  E-value=0.62  Score=23.44  Aligned_cols=17  Identities=29%  Similarity=0.546  Sum_probs=10.5

Q ss_pred             ccceeeccccccccCCCc
Q 035742           97 KLSYISLQSNQLSGKIPL  114 (214)
Q Consensus        97 ~L~~L~ls~N~l~g~~p~  114 (214)
                      +|+.|++++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4566666666666 5554

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=84.25  E-value=2.2  Score=33.51  Aligned_cols=25  Identities=24%  Similarity=0.583  Sum_probs=21.3

Q ss_pred             HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          189 GVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       189 ~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      .....|...+|.+||++.+|.++|+
T Consensus       233 ~li~~cl~~~p~~Rp~~~~il~~l~  257 (262)
T cd05058         233 EVMLSCWHPKPEMRPTFSELVSRIE  257 (262)
T ss_pred             HHHHHHcCCChhhCCCHHHHHHHHH
Confidence            3444599999999999999999986

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=83.98  E-value=0.7  Score=36.67  Aligned_cols=28  Identities=29%  Similarity=0.650  Sum_probs=19.9

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHh
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQL  212 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L  212 (214)
                      ..+.+++..   |...+|.+||+|++++++|
T Consensus       232 ~~~~~li~~---C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  232 KDIYSLIQQ---CWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             HHHHHHHHH---HT-SSGGGS--HHHHHHHH
T ss_pred             HHHHHHHHH---HcCCChhhCcCHHHHHhcC
Confidence            445555555   9999999999999999986

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=83.95  E-value=1.3  Score=35.38  Aligned_cols=26  Identities=23%  Similarity=0.574  Sum_probs=21.9

Q ss_pred             HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          188 MGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+...|...+|.+||+|++|+++|+
T Consensus       256 ~~li~~cl~~~p~~Rpt~~ei~~~l~  281 (284)
T cd05081         256 YAIMKECWNNDPSQRPSFSELALQVE  281 (284)
T ss_pred             HHHHHHHccCChhhCCCHHHHHHHHH
Confidence            34444599999999999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=83.84  E-value=1.5  Score=35.05  Aligned_cols=25  Identities=28%  Similarity=0.648  Sum_probs=21.5

Q ss_pred             HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          189 GVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       189 ~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      .+...|...+|.+||++++|...|+
T Consensus       257 ~li~~cl~~~p~~RP~~~~i~~~l~  281 (283)
T cd05091         257 TLMLECWNEFPSRRPRFKDIHSRLR  281 (283)
T ss_pred             HHHHHHhCCCcccCCCHHHHHHHhh
Confidence            4444599999999999999999986

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=83.48  E-value=0.97  Score=35.44  Aligned_cols=27  Identities=26%  Similarity=0.524  Sum_probs=22.9

Q ss_pred             HHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          187 IMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +..+...|...+|.+||++.+|.++|+
T Consensus       230 ~~~l~~~~l~~~p~~Rp~~~~~l~~l~  256 (256)
T cd05112         230 VYELMQHCWKERPEDRPSFSLLLHQLA  256 (256)
T ss_pred             HHHHHHHHcccChhhCCCHHHHHHhhC
Confidence            445566699999999999999999885

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=83.27  E-value=1.5  Score=34.56  Aligned_cols=29  Identities=21%  Similarity=0.429  Sum_probs=23.8

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |...+|.+||+|.+|+.+|+
T Consensus       225 ~~l~~li~~---~~~~~p~~Rp~~~~i~~~l~  253 (257)
T cd05116         225 PEMYDLMKL---CWTYGVDERPGFAVVELRLR  253 (257)
T ss_pred             HHHHHHHHH---HhccCchhCcCHHHHHHHHh
Confidence            444555555   99999999999999999986

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=83.10  E-value=1  Score=35.56  Aligned_cols=27  Identities=15%  Similarity=0.379  Sum_probs=22.7

Q ss_pred             HHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          188 MGVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      ..+...|...+|..||+|++|.++|++
T Consensus       240 ~~li~~c~~~~p~~Rp~~~~i~~~l~~  266 (268)
T cd05063         240 YQLMLQCWQQDRARRPRFVDIVNLLDK  266 (268)
T ss_pred             HHHHHHHcCCCcccCcCHHHHHHHHHh
Confidence            445555999999999999999999863

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=83.06  E-value=1.1  Score=36.12  Aligned_cols=29  Identities=24%  Similarity=0.426  Sum_probs=23.9

Q ss_pred             HHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          186 SIMGVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       186 ~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      ++..+...|...+|.+||+|.+|.+.|+.
T Consensus       268 ~l~~li~~cl~~~p~~Rpt~~el~~~L~~  296 (296)
T cd05051         268 DIYELMLECWRRDEEDRPTFREIHLFLQR  296 (296)
T ss_pred             HHHHHHHHHhccChhcCCCHHHHHHHhcC
Confidence            34555566999999999999999999873

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=82.85  E-value=1.3  Score=35.62  Aligned_cols=27  Identities=22%  Similarity=0.317  Sum_probs=22.2

Q ss_pred             HHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          188 MGVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      ..+...|+..+|.+||+|+++++.|++
T Consensus       251 ~~li~~~l~~~p~~Rps~~~ll~~l~~  277 (288)
T cd05061         251 TDLMRMCWQFNPKMRPTFLEIVNLLKD  277 (288)
T ss_pred             HHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence            344445999999999999999998863

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=82.83  E-value=1.2  Score=35.89  Aligned_cols=27  Identities=19%  Similarity=0.418  Sum_probs=22.6

Q ss_pred             HHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          188 MGVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      ..+...|...+|.+||+|.+|.+.|+.
T Consensus       270 ~~li~~cl~~~p~~Rp~~~~i~~~l~~  296 (296)
T cd05095         270 YKLMLSCWRRNAKERPSFQEIHATLLE  296 (296)
T ss_pred             HHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            344455999999999999999999874

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=82.63  E-value=1.6  Score=34.78  Aligned_cols=27  Identities=15%  Similarity=0.341  Sum_probs=22.3

Q ss_pred             HHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          188 MGVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      ..+...|.+.+|.+||++.+++++|+.
T Consensus       251 ~~li~~~l~~~p~~Rps~~e~l~~l~~  277 (277)
T cd05062         251 FELMRMCWQYNPKMRPSFLEIISSIKE  277 (277)
T ss_pred             HHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence            334445999999999999999999874

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=82.54  E-value=2.9  Score=32.93  Aligned_cols=26  Identities=23%  Similarity=0.593  Sum_probs=21.3

Q ss_pred             HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          188 MGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ......|...+|.+||++.++++.|+
T Consensus       231 ~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         231 YAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             HHHHHHHcCCCcccCCCHHHHHHhhC
Confidence            33444599999999999999999875

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=82.47  E-value=1.3  Score=35.56  Aligned_cols=26  Identities=19%  Similarity=0.420  Sum_probs=21.7

Q ss_pred             HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          188 MGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ......|...+|.+||++.+|.+.|+
T Consensus       252 ~~li~~~l~~~p~~Rpt~~~v~~~l~  277 (288)
T cd05093         252 YDLMLGCWQREPHMRLNIKEIHSLLQ  277 (288)
T ss_pred             HHHHHHHccCChhhCCCHHHHHHHHH
Confidence            34444599999999999999999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=82.16  E-value=3.4  Score=32.48  Aligned_cols=30  Identities=30%  Similarity=0.558  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          181 QEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       181 ~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +..+.+++.   .|...+|.+||++.+|.+.|+
T Consensus       229 ~~~~~~li~---~~l~~~p~~Rp~~~~i~~~l~  258 (260)
T cd05069         229 PESLHELMK---LCWKKDPDERPTFEYIQSFLE  258 (260)
T ss_pred             CHHHHHHHH---HHccCCcccCcCHHHHHHHHh
Confidence            344444544   499999999999999999986

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=82.06  E-value=1.2  Score=35.91  Aligned_cols=27  Identities=19%  Similarity=0.475  Sum_probs=22.7

Q ss_pred             HHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          187 IMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +......|...+|.+||+|.+|.++|+
T Consensus       268 l~~li~~~l~~~p~~RPs~~~i~~~l~  294 (295)
T cd05097         268 VFKLMMRCWSRDIKDRPTFNKIHHFLR  294 (295)
T ss_pred             HHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence            344555599999999999999999986

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=81.94  E-value=1.2  Score=34.96  Aligned_cols=26  Identities=19%  Similarity=0.602  Sum_probs=22.2

Q ss_pred             HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          188 MGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+...|...+|.+||+++++.++|+
T Consensus       234 ~~~i~~~l~~~p~~Rpt~~~l~~~L~  259 (261)
T cd05148         234 YKIMLECWAAEPEDRPSFKALREELD  259 (261)
T ss_pred             HHHHHHHcCCCchhCcCHHHHHHHHh
Confidence            34445699999999999999999986

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=81.80  E-value=1.9  Score=34.06  Aligned_cols=27  Identities=19%  Similarity=0.411  Sum_probs=22.4

Q ss_pred             HHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          188 MGVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      ..+...|...+|.+||++.+|.++|++
T Consensus       238 ~~li~~cl~~~p~~Rp~~~ei~~~l~~  264 (266)
T cd05033         238 YQLMLDCWQKDRNERPTFSQIVSTLDK  264 (266)
T ss_pred             HHHHHHHcCCCcccCcCHHHHHHHHHh
Confidence            344445999999999999999999873

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=81.73  E-value=1.3  Score=34.93  Aligned_cols=25  Identities=20%  Similarity=0.492  Sum_probs=21.4

Q ss_pred             HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          189 GVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       189 ~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      .+...|...+|.+||++.++.++|+
T Consensus       236 ~li~~cl~~~p~~Rp~~~~l~~~l~  260 (263)
T cd05052         236 ELMRACWQWNPSDRPSFAEIHQAFE  260 (263)
T ss_pred             HHHHHHccCCcccCCCHHHHHHHHH
Confidence            3444599999999999999999986

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=81.65  E-value=1.1  Score=36.09  Aligned_cols=26  Identities=27%  Similarity=0.668  Sum_probs=22.3

Q ss_pred             HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          188 MGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ......|...+|.+||++++++++|+
T Consensus       259 ~~~i~~cl~~~P~~Rp~~~~i~~~l~  284 (290)
T cd05045         259 YNLMLTCWKQEPDKRPTFADISKELE  284 (290)
T ss_pred             HHHHHHHccCCcccCCCHHHHHHHHH
Confidence            34455699999999999999999987

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=81.51  E-value=1  Score=38.08  Aligned_cols=26  Identities=23%  Similarity=0.594  Sum_probs=22.0

Q ss_pred             HHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          189 GVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       189 ~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      .+...|.+.+|.+||+|.+|+++|++
T Consensus       348 ~li~~cl~~dP~~RPs~~eil~~l~~  373 (375)
T cd05104         348 DIMKSCWDADPLKRPTFKQIVQLIEQ  373 (375)
T ss_pred             HHHHHHccCChhHCcCHHHHHHHHHh
Confidence            34445999999999999999999874

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=81.31  E-value=1.3  Score=35.56  Aligned_cols=27  Identities=26%  Similarity=0.569  Sum_probs=22.8

Q ss_pred             HHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          187 IMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +..+...|...+|.+||+|++|++.|+
T Consensus       263 ~~~li~~~l~~~p~~Rps~~eil~~l~  289 (293)
T cd05053         263 LYHLMRDCWHEVPSQRPTFKQLVEDLD  289 (293)
T ss_pred             HHHHHHHHcccCcccCcCHHHHHHHHH
Confidence            445555699999999999999999986

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=81.27  E-value=1.7  Score=35.83  Aligned_cols=26  Identities=23%  Similarity=0.534  Sum_probs=21.9

Q ss_pred             HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          188 MGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+...|...+|.+||++.+|+++|+
T Consensus       307 ~~li~~cl~~dp~~RPs~~el~~~l~  332 (338)
T cd05102         307 YRIMLACWQGDPKERPTFSALVEILG  332 (338)
T ss_pred             HHHHHHHccCChhhCcCHHHHHHHHH
Confidence            34444599999999999999999986

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=81.26  E-value=1.4  Score=34.67  Aligned_cols=27  Identities=26%  Similarity=0.642  Sum_probs=22.4

Q ss_pred             HHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          187 IMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +..+...|...+|.+||+|.+++++|.
T Consensus       230 ~~~li~~c~~~~p~~Rps~~~l~~~l~  256 (256)
T cd05114         230 VYEVMYSCWHEKPEGRPTFAELLRAIT  256 (256)
T ss_pred             HHHHHHHHccCCcccCcCHHHHHHhhC
Confidence            345555699999999999999999873

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=81.25  E-value=2.1  Score=33.85  Aligned_cols=26  Identities=23%  Similarity=0.480  Sum_probs=21.8

Q ss_pred             HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          188 MGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+...|...+|.+||++.++.++|+
T Consensus       244 ~~li~~~l~~~p~~Rps~~~l~~~l~  269 (272)
T cd05075         244 YSLMSSCWLLNPKDRPSFETLRCELE  269 (272)
T ss_pred             HHHHHHHcCCCcccCcCHHHHHHHHH
Confidence            34444599999999999999999986

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=81.12  E-value=2  Score=34.29  Aligned_cols=30  Identities=23%  Similarity=0.487  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      ..+.+++.   .|.+.+|.+||++.+|.++|++
T Consensus       251 ~~~~~li~---~cl~~~P~~Rp~~~~l~~~l~~  280 (280)
T cd05092         251 PEVYAIMQ---GCWQREPQQRMVIKDIHSRLQA  280 (280)
T ss_pred             HHHHHHHH---HHccCChhhCCCHHHHHHHHhC
Confidence            44444444   4999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=81.01  E-value=1.6  Score=34.46  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=19.9

Q ss_pred             hcccCCCCCCCCCHHHHHHHhc
Q 035742          192 FPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       192 l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..|...+|..||+|.+|++++.
T Consensus       247 ~~cl~~~p~~Rp~~~e~~~~~~  268 (269)
T cd08528         247 TSCLTPDAEARPDIIQVSAMIS  268 (269)
T ss_pred             HHHCCCCCccCCCHHHHHHHhc
Confidence            3599999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=80.47  E-value=1.4  Score=34.44  Aligned_cols=26  Identities=35%  Similarity=0.512  Sum_probs=22.0

Q ss_pred             HHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          189 GVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       189 ~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      .....|+..+|.+||++.+|.++|+.
T Consensus       227 ~li~~~l~~~p~~Rps~~~~~~~l~~  252 (252)
T cd05084         227 RLMERCWEYDPGQRPSFSTVHQELQS  252 (252)
T ss_pred             HHHHHHcCCChhhCcCHHHHHHHHhC
Confidence            34445999999999999999999974

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=80.34  E-value=1.4  Score=34.68  Aligned_cols=27  Identities=30%  Similarity=0.672  Sum_probs=22.7

Q ss_pred             HHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          187 IMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +..+...|...+|.+||+|.++..+|+
T Consensus       233 ~~~li~~~l~~~P~~Rp~~~~l~~~l~  259 (261)
T cd05068         233 LYDIMLDCWKEDPDDRPTFETLQWKLE  259 (261)
T ss_pred             HHHHHHHHhhcCcccCCCHHHHHHHHh
Confidence            344555699999999999999999986

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	214
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-06
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-06
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + L+N G +G +   + S+  +LV L LS N   GTIPS +G+LSKL  + L  N L G+
Sbjct: 399 LYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 112 IPLEVGLLTHLKVLHFQFNQ 131
           IP E+  +  L+ L   FN 
Sbjct: 458 IPQELMYVKTLETLILDFND 477

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + L+N G +G +   + S+  +LV L LS N   GTIPS +G+LSKL  + L  N L G+
Sbjct: 396 LYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 112 IPLEVGLLTHLKVLHFQFNQ 131
           IP E+  +  L+ L   FN 
Sbjct: 455 IPQELMYVKTLETLILDFND 474

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + + +T +SG + DF  S    LV LD S N   GT+P  I +L  L  I+   N++SG 
Sbjct: 106 LYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 112 IPLEVGLLTHL 122
           IP   G  + L
Sbjct: 165 IPDSYGSFSKL 175

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-30
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-04
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	9e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  111 bits (280), Expect = 6e-30
 Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 12/137 (8%)

Query: 1   ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAG---RVINISLRNT 57
             ALL+ K  L   N + L SW       ++  C   W G+ C       RV N+ L   
Sbjct: 8   KQALLQIKKDL--GNPTTLSSWLP-----TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 58  GLSGTLS-DFSFSSFPQLVHLDLS-LNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLE 115
            L        S ++ P L  L +  +N  +G IP  I  L++L Y+ +    +SG IP  
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

Query: 116 VGLLTHLKVLHFQFNQL 132
           +  +  L  L F +N L
Sbjct: 121 LSQIKTLVTLDFSYNAL 137

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLS-YISLQSNQLSG 110
           +      LSGTL   S SS P LV +    N   G IP   G+ SKL   +++  N+L+G
Sbjct: 130 LDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188

Query: 111 KIPLEVGLLTHLKVLHFQFNQL 132
           KIP     L  L  +    N L
Sbjct: 189 KIPPTFANLN-LAFVDLSRNML 209

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.4 bits (163), Expect = 3e-13
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + L    L G  S   F S      + L+ N     +   +G    L+ + L++N++ G 
Sbjct: 202 VDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGT 259

Query: 112 IPLEVGLLTHLKVLHFQFNQL 132
           +P  +  L  L  L+  FN L
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 64.1 bits (157), Expect = 1e-12
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           +++    L+G +   +F++   L  +DLS N   G      G+      I L  N L+  
Sbjct: 179 MTISRNRLTGKIPP-TFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236

Query: 112 IPLEVGLLTHLKVLHFQFNQL 132
           +  +VGL  +L  L  + N++
Sbjct: 237 LG-KVGLSKNLNGLDLRNNRI 256

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 62.9 bits (154), Expect = 4e-12
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG 110
            I L    L+  L          L  LDL  N   GT+P  +  L  L  +++  N L G
Sbjct: 225 KIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 111 KIPLEVGLLTHLKVLHFQFN 130
           +IP + G L    V  +  N
Sbjct: 283 EIP-QGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 59  LSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPL 114
           + GTL     +    L  L++S N   G IP   GNL +    +  +N+     PL
Sbjct: 256 IYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPL 309

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  103 bits (258), Expect = 1e-25
 Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 38/160 (23%)

Query: 1   ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLS 60
              L+ +K  L   N  LLP W++          PC + G++C    +V +I L +  L+
Sbjct: 14  IHQLISFKDVLPDKN--LLPDWSSNKN-------PCTFDGVTC-RDDKVTSIDLSSKPLN 63

Query: 61  GTLSDFS-------------------------FSSFPQLVHLDLSLNGFLGTIPS--QIG 93
              S  S                         F     L  LDLS N   G + +   +G
Sbjct: 64  VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123

Query: 94  NLSKLSYISLQSNQLSGKIPLEVGL-LTHLKVLHFQFNQL 132
           + S L ++++ SN L     +  GL L  L+VL    N +
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.4 bits (194), Expect = 4e-17
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           +SL     +G + DF   +   L  LDLS N F G +P   G+ S L  ++L SN  SG+
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 112 IPLEV-GLLTHLKVLHFQFNQL 132
           +P++    +  LKVL   FN+ 
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 4e-16
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + L+N G +G +   + S+  +LV L LS N   GTIPS +G+LSKL  + L  N L G+
Sbjct: 399 LYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457

Query: 112 IPLEVGLLTHLKVLHFQFNQL 132
           IP E+  +  L+ L   FN L
Sbjct: 458 IPQELMYVKTLETLILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.2 bits (183), Expect = 1e-15
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 52  ISLRNTGLSGTL-SDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG 110
           + L +   SG +  +   +    L  L L  NGF G IP  + N S+L  + L  N LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 111 KIPLEVGLLTHLKVLHFQFNQL 132
            IP  +G L+ L+ L    N L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNML 454

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 72.6 bits (179), Expect = 3e-15
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + + +   S  +          L HLD+S N   G     I   ++L  +++ SNQ  G 
Sbjct: 205 LDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262

Query: 112 IPLEVGLLTHLKVLHFQFNQL 132
           IP     L  L+ L    N+ 
Sbjct: 263 IPPL--PLKSLQYLSLAENKF 281

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 8e-15
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + L    L G +          L  L L  N   G IPS + N + L++ISL +N+L+G+
Sbjct: 447 LKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505

Query: 112 IPLEVGLLTHLKVLHFQFNQL 132
           IP  +G L +L +L    N  
Sbjct: 506 IPKWIGRLENLAILKLSNNSF 526

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.5 bits (176), Expect = 8e-15
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + L    LSGT+   S  S  +L  L L LN   G IP ++  +  L  + L  N L+G+
Sbjct: 423 LHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481

Query: 112 IPLEVGLLTHLKVLHFQFNQL 132
           IP  +   T+L  +    N+L
Sbjct: 482 IPSGLSNCTNLNWISLSNNRL 502

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLS-KLSYISLQSNQLSG 110
           ++L +   SG L   +      L  LDLS N F G +P  + NLS  L  + L SN  SG
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382

Query: 111 KIPLEVG--LLTHLKVLHFQFNQL 132
            I   +       L+ L+ Q N  
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGF 406

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.8 bits (169), Expect = 6e-14
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI---GNLSKLSYISLQSNQL 108
           +++ +  L              L  LDLS N   G             +L ++++  N++
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

Query: 109 SGKIPLEVGLLTHLKVLHFQFNQL 132
           SG + +      +L+ L    N  
Sbjct: 191 SGDVDV--SRCVNLEFLDVSSNNF 212

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.4 bits (168), Expect = 8e-14
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGN--LSKLSYISLQSNQL 108
            + L     SG L +   +    L+ LDLS N F G I   +     + L  + LQ+N  
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406

Query: 109 SGKIPLEVGLLTHLKVLHFQFNQL 132
           +GKIP  +   + L  LH  FN L
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYL 430

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.0 bits (167), Expect = 1e-13
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG 110
            + L    L+G +     S+   L  + LS N   G IP  IG L  L+ + L +N  SG
Sbjct: 470 TLILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

Query: 111 KIPLEVGLLTHLKVLHFQFNQL 132
            IP E+G    L  L    N  
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 52  ISLRNTGLSGTL--SDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS 109
           + L    +SG             +L HL +S N   G +   +     L ++ + SN  S
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFS 213

Query: 110 GKIPLEVGLLTHLKVLHFQFNQL 132
             IP  +G  + L+ L    N+L
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKL 235

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 3e-13
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 41  ISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSY 100
           I      +  + +       G  S+   +        +++   + G       N   + +
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSE-QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636

Query: 101 ISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQL 132
           + +  N LSG IP E+G + +L +L+   N +
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.5 bits (163), Expect = 5e-13
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG 110
           ++ +    LSG  S  + S+  +L  L++S N F+G IP     L  L Y+SL  N+ +G
Sbjct: 227 HLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTG 283

Query: 111 KIPLEV-GLLTHLKVLHFQFNQL 132
           +IP  + G    L  L    N  
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHF 306

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 49  VINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQL 108
               ++ +    G  S  +F +   ++ LD+S N   G IP +IG++  L  ++L  N +
Sbjct: 610 RNPCNITSRVYGGHTSP-TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

Query: 109 SGKIPLEVGLLTHLKVLHFQFNQL 132
           SG IP EVG L  L +L    N+L
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKL 692

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.4 bits (155), Expect = 5e-12
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           ISL N  L+G +          L  L LS N F G IP+++G+   L ++ L +N  +G 
Sbjct: 495 ISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553

Query: 112 IPLEVGLLTHL 122
           IP  +   +  
Sbjct: 554 IPAAMFKQSGK 564

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.6 bits (153), Expect = 8e-12
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 49  VINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQL 108
           ++ + +    LSG +      S P L  L+L  N   G+IP ++G+L  L+ + L SN+L
Sbjct: 634 MMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692

Query: 109 SGKIPLEVGLLTHLKVLHFQFNQL 132
            G+IP  +  LT L  +    N L
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + L N   SG +          L+ LDL+ N F GTIP+ +   S      + +N ++GK
Sbjct: 519 LKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGK 573

Query: 112 IPLEVGLLTHLKVLHFQFNQLKL 134
             + +      K  H   N L+ 
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEF 596

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 54  LRNTGLSGTL-SDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKI 112
           +    ++G            +  H   +L  F G    Q+  LS  +  ++ S    G  
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624

Query: 113 PLEVGLLTHLKVLHFQFNQL 132
                    +  L   +N L
Sbjct: 625 SPTFDNNGSMMFLDMSYNML 644

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 19/47 (40%), Positives = 23/47 (48%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIP 113
                  L  LDLS N   G IP  +  L+ L+ I L +N LSG IP
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.8 bits (179), Expect = 3e-15
 Identities = 25/141 (17%), Positives = 37/141 (26%), Gaps = 8/141 (5%)

Query: 2   DALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAW---FGISCSDAGRVINISLRNTG 58
            AL +   +L   N S     T    N +       W    G+S +  GRV  +SL   G
Sbjct: 33  LALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFG 92

Query: 59  LSGTLSDFSFSSFPQLVHLDLSLN----GFLGTIPSQIGNLSKLSYISLQSNQLSGKIPL 114
            SG + D +     +L  L L  +          P  I                      
Sbjct: 93  ASGRVPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVD 151

Query: 115 EVGLLTHLKVLHFQFNQLKLL 135
                    ++    N     
Sbjct: 152 YDPREDFSDLIKDCINSDPQQ 172

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 7e-11
 Identities = 12/91 (13%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQL-- 108
           N +        T  D  + +   L  +++     L  +P+ +  L ++  I++  N+   
Sbjct: 229 NENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 109 ------SGKIPLEVGLLTHLKVLHFQFNQLK 133
                   +   +  +   +++++  +N LK
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQ------S 105
           I LR   L+    DF  ++ P LV +DLS N      P+Q  N S L    ++       
Sbjct: 493 IDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQG 551

Query: 106 NQLSGKIPLEVGLLTHLKVLHFQFNQL 132
           N+   + P  + L   L  L    N +
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDI 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 67  SFSSFPQLVHLDLSLNGFL-GTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL 125
                 ++  + +  N      + + +  + KL  +    NQL GK+P   G    L  L
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358

Query: 126 HFQFNQL 132
           +  +NQ+
Sbjct: 359 NLAYNQI 365

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 8/62 (12%), Positives = 23/62 (37%)

Query: 74  LVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLK 133
             + +        T   +  NL  L+ + + +     K+P  +  L  +++++   N+  
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

Query: 134 LL 135
             
Sbjct: 287 SG 288

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLN-------GFLGTIPSQIGNLSKLSYISL 103
           N+S  +  L    + F   S   +  +D S N            +         +S I+L
Sbjct: 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 104 QSNQLSGKIPLEVGLLTHLKVLHFQFNQL 132
            +NQ+S          + L  ++   N L
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNML 469

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 50  INISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFL--------GTIPSQIGNLSKLSYI 101
            ++ + N      L      + P++  ++++ N  +            +      K+  I
Sbjct: 252 TDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 102 SLQSNQL-SGKIPLEVGLLTHLKVLHFQFNQL 132
            +  N L +  +   +  +  L +L   +NQL
Sbjct: 311 YIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
           S     +L  L+   N   G +P+  G+  KL+ ++L  NQ++       G    ++ L 
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383

Query: 127 FQFNQLKLL 135
           F  N+LK +
Sbjct: 384 FAHNKLKYI 392

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 7/73 (9%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG-------KIPLEVGLL 119
           +      +  ++LS N             S LS I+L  N L+                 
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 120 THLKVLHFQFNQL 132
             L  +  +FN+L
Sbjct: 488 YLLTSIDLRFNKL 500

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
           +   F      D   N  L   P  I     L+ + + SN +   +  +  +  ++ VL 
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEK--ITPNISVLD 593

Query: 127 FQFNQL 132
            + N  
Sbjct: 594 IKDNPN 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 1/79 (1%)

Query: 54  LRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIP 113
           +R       +       F  L+   ++ +    +I        K + I   SN ++  + 
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VS 199

Query: 114 LEVGLLTHLKVLHFQFNQL 132
             V  LT L+  +   +  
Sbjct: 200 KAVMRLTKLRQFYMGNSPF 218

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 10/94 (10%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 48  RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQ 107
            +I   + +     ++   S     +   +    N  +  +   +  L+KL    + ++ 
Sbjct: 160 DLIKDCINSDPQQKSIKK-SSRITLKDTQIGQLSNN-ITFVSKAVMRLTKLRQFYMGNSP 217

Query: 108 LSGKIPLEVGLLTHLKVLHF------QFNQLKLL 135
              +   E     + +          +++ LK L
Sbjct: 218 FVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGF-------LGTIPSQIGNLSKLSYISLQ 104
           I+L N  +S    +  FS+   L  ++L  N         L        N   L+ I L+
Sbjct: 438 INLSNNQISKFPKE-LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 105 SNQLSGKIP--LEVGLLTHLKVLHFQFNQLK 133
            N+L+  +        L +L  +   +N   
Sbjct: 497 FNKLTK-LSDDFRATTLPYLVGIDLSYNSFS 526

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 13/60 (21%), Positives = 29/60 (48%)

Query: 78  DLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVL 137
           +  L+ +       + +  +++ +SL+    SG++P  +G LT L+VL    +  K+   
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 8/82 (9%), Positives = 23/82 (28%), Gaps = 4/82 (4%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG 110
               +         +   +  P L  L +  N  +  +  +I     +S + ++ N    
Sbjct: 546 QRDAQGNRTLREWPE-GITLCPSLTQLQIGSND-IRKVNEKI--TPNISVLDIKDNPNIS 601

Query: 111 KIPLEVGLLTHLKVLHFQFNQL 132
                V       +    +++ 
Sbjct: 602 IDLSYVCPYIEAGMYMLFYDKT 623

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.1 bits (154), Expect = 6e-12
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG 110
           N+ L    L   L  +SF SFP+L  LDLS             +LS LS + L  N +  
Sbjct: 32  NLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 111 KIPLEVGLLTHLKVLHFQFNQLKLL 135
                   L+ L+ L      L  L
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASL 115

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           +  +++ L        F S   L++LD+S              LS L  + +  N     
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 112 IPLEV-GLLTHLKVLHFQFNQLK 133
              ++   L +L  L     QL+
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLE 483

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + L    +   + D ++ S   L  L L+ N            LS L  +      L+  
Sbjct: 57  LDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 112 IPLEVGLLTHLKVLHFQFNQLK 133
               +G L  LK L+   N ++
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQ 137

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 16/82 (19%), Positives = 27/82 (32%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + +             F+    L  LDLS        P+   +LS L  +++  N     
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 112 IPLEVGLLTHLKVLHFQFNQLK 133
                  L  L+VL +  N + 
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.3 bits (131), Expect = 7e-09
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 5/78 (6%)

Query: 63  LSDFSFSSFPQ-----LVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVG 117
             + +F   P        +LDLS N           +  +L  + L   ++         
Sbjct: 14  CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73

Query: 118 LLTHLKVLHFQFNQLKLL 135
            L+HL  L    N ++ L
Sbjct: 74  SLSHLSTLILTGNPIQSL 91

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 1/77 (1%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGLLT 120
                +F    QL HLD   +         +  +L  L Y+ +               L+
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 121 HLKVLHFQFNQLKLLVL 137
            L+VL    N  +   L
Sbjct: 446 SLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + L    L       +F+S   L  L++S N F          L+ L  +    N +   
Sbjct: 475 LDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

Query: 112 IPLEVG-LLTHLKVLHFQFNQL 132
              E+    + L  L+   N  
Sbjct: 534 KKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 53  SLRNTGLSGTLSDFSFSSFPQLVHLDLSLNG--FLGTIPSQIGNLSKLSYISLQSNQLSG 110
            L  T   G  + FS    P L  LDLS NG  F G         + L Y+ L  N +  
Sbjct: 329 RLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 111 KIPLEVGLLTHLKVLHFQFNQLK 133
            +      L  L+ L FQ + LK
Sbjct: 388 -MSSNFLGLEQLEHLDFQHSNLK 409

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSY----ISLQSNQ 107
           +++ +  +        FS+   L HLDLS N       + +  L ++      + L  N 
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 108 LSGKIPLEVGLLTHLKVLHFQFNQLKLLVL 137
           ++  I         L  L  + N   L V+
Sbjct: 189 MNF-IQPGAFKEIRLHKLTLRNNFDSLNVM 217

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 48  RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLS------LNGFLGTIPSQIGNLSKLSYI 101
            V  + L      G L  F  S+   L +L +       L+ +L  I      L+ +S  
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 102 SLQSNQLSGKIPL-EVGLLTHLKVLHFQFNQLKLLVL 137
           SL S  +             HL++++ +F Q   L L
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 63  LSDFSFSSFPQLV---HLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS--GKIPLEVG 117
           L +  F  FP L       L+     G       +L  L ++ L  N LS  G       
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 118 LLTHLKVLHFQFNQLKLL 135
             T LK L   FN +  +
Sbjct: 371 GTTSLKYLDLSFNGVITM 388

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 9/91 (9%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGT------IPSQIGNLSKLSYISLQS 105
           ++LRN   S  +          L    L L  F           S +  L  L+    + 
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 106 NQLS---GKIPLEVGLLTHLKVLHFQFNQLK 133
             L      I      LT++         ++
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 10/92 (10%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG 110
           + +             S+S+   L  ++L     +  +P  + +L +L  +++  N+   
Sbjct: 471 DANSDYAKQYENEEL-SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

Query: 111 ---------KIPLEVGLLTHLKVLHFQFNQLK 133
                    ++  +      +++ +  +N L+
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 4e-10
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQ------S 105
           I LR   L+    DF  ++ P L ++D+S N    + P+Q  N S+L    ++       
Sbjct: 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEG 791

Query: 106 NQLSGKIPLEVGLLTHLKVLHFQFNQL 132
           N++  + P  +     L  L    N +
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDI 818

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 6e-10
 Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 21/134 (15%)

Query: 2   DALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAW-FGISCSDAGRVINISLRNTGLS 60
            AL     +L   N        N T +  +      W F       G    + L N G  
Sbjct: 272 KALKAIWEALDGKNWRYYSGTINNTIHSLN------WNFNKELDMWGDQPGVDLDNNG-- 323

Query: 61  GTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLT 120
                       ++  L L+  G  G +P  IG L++L  +S  ++  +    L      
Sbjct: 324 ------------RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371

Query: 121 HLKVLHFQFNQLKL 134
              +   + +++++
Sbjct: 372 TPDMSEERKHRIRM 385

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 3/74 (4%)

Query: 63  LSDFSFSSFP---QLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLL 119
            ++  F+           +               NL  L+ + L +     ++P  +  L
Sbjct: 455 FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514

Query: 120 THLKVLHFQFNQLK 133
             L+ L+   N+  
Sbjct: 515 PELQSLNIACNRGI 528

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 7e-09
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 13/95 (13%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLN---------GFLGTIPSQIGNLSKLSYIS 102
           + L N      L D      P+L  L+++ N              +        K+    
Sbjct: 496 VELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 103 LQSNQLSGKIPLEVGL--LTHLKVLHFQFNQLKLL 135
           +  N L    P    L  +  L +L    N+++ L
Sbjct: 555 MGYNNLEE-FPASASLQKMVKLGLLDCVHNKVRHL 588

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 7/83 (8%)

Query: 60  SGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS-------GKI 112
                            + LS N             S +S I L +N ++          
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720

Query: 113 PLEVGLLTHLKVLHFQFNQLKLL 135
                    L  +  +FN+L  L
Sbjct: 721 DGNYKNTYLLTTIDLRFNKLTSL 743

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
             +    L    +  S     +L  LD   N  +  + +  G   KL+ + L  NQ+   
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLEA-FGTNVKLTDLKLDYNQIEE- 609

Query: 112 IPLEVG-LLTHLKVLHFQFNQLKLL 135
           IP +       ++ L F  N+LK +
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYI 634

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 43  CSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIG------NLS 96
           C+   +V  +   +  L    + F+  S   +  +D S N  +G+    I          
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGI 673

Query: 97  KLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLL 135
             S ++L  N++           + +  +    N +  +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 76  HLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQL 132
             D   N  L   P+ I     L  + + SN +  K+  +  L   L +L    N  
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEK--LTPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIG-NLSKLSYISLQSNQLSGKIPLEVGL--LTHLK 123
           +F +  +L  L L  N  +  IP        ++  +    N+L   IP       +  + 
Sbjct: 590 AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMG 647

Query: 124 VLHFQFNQLKLL 135
            + F +N++   
Sbjct: 648 SVDFSYNKIGSE 659

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 48  RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGF-------LGTIPSQIGNLSKLSY 100
               ++L    +    ++  F++   +  + LS N         L        N   L+ 
Sbjct: 674 NASTVTLSYNEIQKFPTE-LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732

Query: 101 ISLQSNQLSGKIPLEVGL--LTHLKVLHFQFNQLK 133
           I L+ N+L+  +  +     L +L  +   +N   
Sbjct: 733 IDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS 766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 14/59 (23%), Positives = 27/59 (45%)

Query: 77  LDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLL 135
            +  L+ +       + N  +++ +SL      G++P  +G LT LKVL F  +   + 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 10/123 (8%), Positives = 25/123 (20%), Gaps = 2/123 (1%)

Query: 5   LKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGTLS 64
                 L                 +               +   ++  ++        + 
Sbjct: 359 ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418

Query: 65  DFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV 124
             S  S       +L+    +  I   I  L+KL  I   ++  +           +   
Sbjct: 419 KDSRISLKDTQIGNLTNR--ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY 476

Query: 125 LHF 127
              
Sbjct: 477 AKQ 479

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 6/113 (5%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGF-----LGTIPSQIGNLSKLSYISLQSN 106
              R   +             +L   DL  +       +  I        K + I   +N
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN 435

Query: 107 QLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKHPRDFLCSILSSSL 159
           +++  I   +  LT L++++F  +      + ++                 S 
Sbjct: 436 RITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 7e-11
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 49  VINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQL 108
           +  ++L +  L   L   +F+ + QL  LD+  N      P     L  L  ++LQ N+L
Sbjct: 27  ITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85

Query: 109 SGKIPLEVGLLTHLKVLHFQFNQLKLL 135
           S          T+L  LH   N ++ +
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKI 112

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 2/83 (2%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG- 110
           + L    +   L+   +     +  + LS N +L    +    +  L  + L+   L   
Sbjct: 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 111 -KIPLEVGLLTHLKVLHFQFNQL 132
              P     L +L +L    N +
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNI 492

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 17/71 (23%), Positives = 25/71 (35%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
            LSD +F+    L  L L  N       +       L  + L  N LS         L +
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 122 LKVLHFQFNQL 132
           L+ L    N++
Sbjct: 147 LQELLLSNNKI 157

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGF--LGTIPSQIGNLSKLSYISLQSNQLS 109
           I L        L+  SF+  P L  L L       + + PS    L  L+ + L +N ++
Sbjct: 435 IYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

Query: 110 GKIPLEVGLLTHLKVLHFQFNQLKLL 135
                 +  L  L++L  Q N L  L
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARL 519

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQ-IGNLSKLSYISLQSNQLSG 110
           ++L    +S   SD +FS    L  LDL LN     +  Q    L  +  I L  N+   
Sbjct: 386 LNLTKNKISKIESD-AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 111 KIPLEVGLLTHLKVLHFQFNQLKLLVLVLEVIKG 144
                  L+  L+ L  +   LK +       + 
Sbjct: 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG- 110
           + L +  +   + +  F     L+ LDLS NG   T       L  L  + L +N++   
Sbjct: 102 LHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160

Query: 111 -KIPLEVGLLTHLKVLHFQFNQLK 133
               L++   + LK L    NQ+K
Sbjct: 161 KSEELDIFANSSLKKLELSSNQIK 184

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 43  CSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYIS 102
           C+ +  V + S         L+         +  L+L+ N       +     S+L+ + 
Sbjct: 2   CTVSHEVADCSHLK------LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 103 LQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLL 135
           +  N +S   P     L  LKVL+ Q N+L  L
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 88

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 51  NISLRNTGLSGTLSD-FSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS 109
           N+SL N+ LS T +  F    +  L  LDLS N            L +L Y  L+ N + 
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285

Query: 110 GKIPLEVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKHPRDF 150
                 +  L +++ L+ + +      + L  +       F
Sbjct: 286 HLFSHSLHGLFNVRYLNLKRS-FTKQSISLASLPKIDDFSF 325

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 52  ISLRNTGLSG-TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG 110
           + L N  +      +    +   L  L+LS N      P     + +L  + L + QL  
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 111 KIPLEVGL---LTHLKVLHFQFNQL 132
            +  ++ L    T ++ L    +QL
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQL 234

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 55  RNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPL 114
             +  + T   F   +   L  L+L+ N            L  L  + L  N++  ++  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 115 EV-GLLTHLKVLHFQFNQLKLL 135
           +    L ++  ++  +N+   L
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQL 445

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 9e-09
 Identities = 14/72 (19%), Positives = 20/72 (27%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
            L        P L  L+L  N             + L+ + L SN +            +
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 122 LKVLHFQFNQLK 133
           L  L    N L 
Sbjct: 123 LITLDLSHNGLS 134

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 18/85 (21%), Positives = 29/85 (34%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG 110
           N++      +     +       L  L+L  NGF         +L +L  I L  N L+ 
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 111 KIPLEVGLLTHLKVLHFQFNQLKLL 135
                      LK L+ Q N +  +
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSV 599

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           ++L + G    +    F    +L  +DL LN       S   N   L  ++LQ N ++  
Sbjct: 541 LNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599

Query: 112 IPLEVG-LLTHLKVLHFQFNQL 132
                G    +L  L  +FN  
Sbjct: 600 EKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 9e-08
 Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 52  ISLRNTGLSG-TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS- 109
           + LR   L     S   F     L  LDLS N         +  L KL  + LQ N L+ 
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518

Query: 110 -------GKIPLEVGLLTHLKVLHFQFNQLK 133
                  G     +  L+HL +L+ + N   
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIG---NLSKLSYISLQSNQL 108
           + L +  +    S   F +  +L  L L+      ++  ++      + +  +SL ++QL
Sbjct: 176 LELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 109 SGKIPLEVGLL--THLKVLHFQFNQLK 133
           S         L  T+L +L   +N L 
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLN 261

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 10/95 (10%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDL---------SLNGFLGTIPSQIGNLSKLSYIS 102
             L    +   L   S      + +L+L         SL             L  L +++
Sbjct: 277 FFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 103 LQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVL 137
           ++ N + G        L +LK L    +   L  L
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 53  SLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKI 112
           +     L  T      ++ P  V L+L     L   P Q   LS L ++++ +  L  ++
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 113 PLEVGLLTHLKVLHFQFNQLKLL 135
           P  +     L+ L    N L+ L
Sbjct: 120 PDTMQQFAGLETLTLARNPLRAL 142

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.6 bits (114), Expect = 7e-07
 Identities = 14/69 (20%), Positives = 25/69 (36%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
            F     L  L L     L T+P  I  L++L  + L+      ++P  +  L    ++ 
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Query: 127 FQFNQLKLL 135
              +    L
Sbjct: 308 VPPHLQAQL 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
                  L  L L   G + ++P+ I NL  L  + ++++ LS  +   +  L  L+ L 
Sbjct: 178 EHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235

Query: 127 FQ-FNQLKLL 135
            +    L+  
Sbjct: 236 LRGCTALRNY 245

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQS-NQLSGKIPLEVGLLTHLKVL 125
           +    P+L  LDL     L   P   G  + L  + L+  + L   +PL++  LT L+ L
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKL 282

Query: 126 HFQFNQ 131
             +   
Sbjct: 283 DLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 10/78 (12%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVG--------- 117
           +   F  L  L L+ N  L  +P+ I +L++L  +S+++     ++P  +          
Sbjct: 122 TMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 118 LLTHLKVLHFQFNQLKLL 135
            L +L+ L  ++  ++ L
Sbjct: 181 GLVNLQSLRLEWTGIRSL 198

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 9e-09
 Identities = 15/74 (20%), Positives = 26/74 (35%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
           T+ + +FS    L  LDL+             +  +L  + L +N L       +     
Sbjct: 47  TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 122 LKVLHFQFNQLKLL 135
           LK L F    +  +
Sbjct: 107 LKHLFFIQTGISSI 120

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 19/74 (25%), Positives = 28/74 (37%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
            +++ + S    L HL     G        + N   L  + L SN +S     +      
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 122 LKVLHFQFNQLKLL 135
           LKVL FQ N +  L
Sbjct: 155 LKVLDFQNNAIHYL 168

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + L  T L    +   F +   L  L+LS +    +       L  L +++LQ N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 112 IPLEVGL---LTHLKVLHFQFNQLK 133
              +      L  L++L   F  L 
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLS 489

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 11/74 (14%), Positives = 28/74 (37%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
            + + +F S  +L  L L+ N  +    + +     L ++      +S    + +     
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 122 LKVLHFQFNQLKLL 135
           L+ L+   N +  +
Sbjct: 131 LESLYLGSNHISSI 144

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 9e-08
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
            +S  +F  F  L  LDL+    L  +PS +  LS L  + L +N+      +       
Sbjct: 268 NISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326

Query: 122 LKVLHFQFNQLKLLV 136
           L  L  + N  +L +
Sbjct: 327 LTHLSIKGNTKRLEL 341

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLN--GFLGTIPSQIGNLSKLSYISLQSNQLS 109
           +S++       L      +   L  LDLS +          Q+ NLS L  ++L  N+  
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389

Query: 110 GKIPLEVGLLTHLKVLHFQFNQLKLL 135
                       L++L   F +LK+ 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVK 415

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQ-IGNLSKLSYISLQSNQLSGKIPLEVGL-- 118
            L   S S+FP L HL +  N     + +  + NL  L  + L  + +       + L  
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 119 LTHLKVLHFQFNQL 132
           L+HL+ L+  +N+ 
Sbjct: 375 LSHLQSLNLSYNEP 388

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 53  SLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKI 112
            L    LS  +   +F+S   + H+DLS N    +    + +L  + Y++L SN +S  +
Sbjct: 482 VLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539

Query: 113 PLEVGLLTHLKVLHFQFNQL 132
           P  + +L+  + ++ + N L
Sbjct: 540 PSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 1/74 (1%)

Query: 63  LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEV-GLLTH 121
             +    +   L  L+LS N  L           +L  + L   +L  K        L  
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426

Query: 122 LKVLHFQFNQLKLL 135
           LKVL+   + L + 
Sbjct: 427 LKVLNLSHSLLDIS 440

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEV-GLLTHLKVL 125
                  L  L LS N F         N   L+++S++ N    ++       L +L+ L
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355

Query: 126 HFQFNQLKLLVLVLEVIKG 144
               + ++        ++ 
Sbjct: 356 DLSHDDIETSDCCNLQLRN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 66  FSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL 125
           F       +  ++L  + F     +     S L  + L +  LS ++P  +  L+ LK L
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKL 306

Query: 126 HFQFNQLKLL 135
               N+ + L
Sbjct: 307 VLSANKFENL 316

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 1/94 (1%)

Query: 53  SLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKI 112
               TG+S  +      +   L  L L  N        +     KL  +  Q+N +    
Sbjct: 111 FFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169

Query: 113 PLEVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKH 146
             ++  L     L    N   +  +         
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
           S  +  +L  L LS             +L  ++++ L  N+L+      +  L  +  L+
Sbjct: 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529

Query: 127 FQFNQLKLL 135
              N + ++
Sbjct: 530 LASNHISII 538

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLS--YISLQSNQLSGKIPLEVGLL 119
           ++         +L  LD   N         + +L + +   ++L  N ++G I       
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDS 201

Query: 120 THLKVLHFQFNQLKLLVL 137
              + L+F   Q  L++ 
Sbjct: 202 AVFQSLNFGGTQNLLVIF 219

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNG-FLGTIPSQIGNLSKLSYISLQSNQLSG 110
           +  +N  +   LS    SS  Q  +L L+LNG  +  I     + +    ++    Q   
Sbjct: 158 LDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216

Query: 111 KIPLEVGL--LTHLKVLHFQFNQLK 133
            I   +    +  L +  F+    +
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDE 241

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           +  +++ L       +F S  +L++LD+S              L+ L+ + +  N     
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 112 IPLEV-GLLTHLKVLHFQFNQLK 133
               V    T+L  L     QL+
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLE 486

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + L    L   +S   F +  +L  L++S N  L    S    L  LS +    N++   
Sbjct: 478 LDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 112 IPLEVGLLTHLKVLHFQFNQL 132
             +       L   +   N +
Sbjct: 537 KGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 22/74 (29%), Positives = 29/74 (39%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
            L  +SFS+F +L  LDLS              L  LS + L  N +    P     LT 
Sbjct: 46  ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105

Query: 122 LKVLHFQFNQLKLL 135
           L+ L     +L  L
Sbjct: 106 LENLVAVETKLASL 119

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 16/72 (22%), Positives = 28/72 (38%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
           T+ D ++     L +L L+ N      P     L+ L  +     +L+      +G L  
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 122 LKVLHFQFNQLK 133
           LK L+   N + 
Sbjct: 130 LKKLNVAHNFIH 141

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG 110
           N+ L    +    S  SFS    L +L              IG L  L  +++  N +  
Sbjct: 84  NLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 111 -KIPLEVGLLTHLKVLHFQFNQLKLL 135
            K+P     LT+L  +   +N ++ +
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTI 168

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 15/77 (19%), Positives = 24/77 (31%)

Query: 59  LSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGL 118
                    F++   L  LDLS              L +L  +++  N L          
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 119 LTHLKVLHFQFNQLKLL 135
           L  L  L   FN+++  
Sbjct: 520 LYSLSTLDCSFNRIETS 536

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 63  LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIP--LEVGLLT 120
           L  F     P L  L L++N   G+I  +   L  LSY+ L  N LS             
Sbjct: 319 LKQFPTLDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 121 HLKVLHFQFNQLKLL 135
            L+ L   FN   ++
Sbjct: 377 SLRHLDLSFNGAIIM 391

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 66  FSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEV-GLLTHLKV 124
           +S      L HLDLS NG    + +    L +L ++  Q + L           L  L  
Sbjct: 370 YSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 125 LHFQFNQLKLL 135
           L   +   K+ 
Sbjct: 429 LDISYTNTKID 439

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 1/73 (1%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIP-SQIGNLSKLSYISLQSNQLSGKIPLEVGLLT 120
            +   +F    +L HLD   +        S   +L KL Y+ +               LT
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 121 HLKVLHFQFNQLK 133
            L  L    N  K
Sbjct: 449 SLNTLKMAGNSFK 461

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 63  LSDFSFSSF-PQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
           + D        +L  LDLS N  L  +  +  + + +++ISL++N+L   I   +    +
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238

Query: 122 LKVLHFQFNQLKLLVL 137
           L+    + N      L
Sbjct: 239 LEHFDLRGNGFHCGTL 254

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQ--IGNLSKLSYISLQSNQLSGKIPLEVGLL 119
            L D       ++ +LDL LN  + T+       +   L +++LQ N +   +  +V + 
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VF 190

Query: 120 THLKVLHFQFNQLKLL 135
             LK L    N+L  +
Sbjct: 191 AKLKTLDLSSNKLAFM 206

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 63  LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG-KIPLEVGLLTH 121
           +S  S S      ++ L+ N          G  S++ Y+ L+ N++              
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 122 LKVLHFQFNQLKLL 135
           L+ L+ Q+N +  +
Sbjct: 171 LEHLNLQYNFIYDV 184

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 53  SLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKI 112
            + ++ L          S   +  LDLS N       + +   +KL  ++L SN L    
Sbjct: 16  KVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-- 72

Query: 113 PLEVGLLTHLKVLHFQFNQLKLL 135
            L++  L+ L+ L    N ++ L
Sbjct: 73  TLDLESLSTLRTLDLNNNYVQEL 95

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 10/66 (15%), Positives = 24/66 (36%)

Query: 68  FSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127
             +  +     ++ +     + S   +   +  + L  N LS     ++   T L++L+ 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 128 QFNQLK 133
             N L 
Sbjct: 66  SSNVLY 71

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 8/69 (11%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
              S   L  LDL+ N        ++     +  +   +N +S    +        K ++
Sbjct: 75  DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR---VSCSRGQGKKNIY 126

Query: 127 FQFNQLKLL 135
              N++ +L
Sbjct: 127 LANNKITML 135

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSG 110
           + L  T L  T+   +FS+ P +  + +S++  L  + S    NLSK+++I +++ +   
Sbjct: 36  LKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT 94

Query: 111 KIPLEV-GLLTHLKVLHFQFNQLKLL 135
            I  +    L  LK L      LK+ 
Sbjct: 95  YIDPDALKELPLLKFLGIFNTGLKMF 120

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 48.3 bits (116), Expect = 5e-07
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 9/84 (10%)

Query: 136 VLVLEVIKGKHPRDF------LCSILSSSLTKDVALDEMLDPRLPTSSCSVQEKLISIMG 189
           V++LE+I G    D       L  I      ++  +++ +D ++  +       + ++  
Sbjct: 222 VVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM--NDADSTS-VEAMYS 278

Query: 190 VAFPCLNESPVSRPTMQTVSQQLQ 213
           VA  CL+E    RP ++ V Q LQ
Sbjct: 279 VASQCLHEKKNKRPDIKKVQQLLQ 302

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 63  LSDFSFSSF-PQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
           + D        +L  LDLS N  L  +  +  + + +++ISL++N+L   I   +    +
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238

Query: 122 LKVLHFQFNQLKLLVL 137
           L+    + N      L
Sbjct: 239 LEHFDLRGNGFHCGTL 254

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQ--IGNLSKLSYISLQSNQLSGKIPLEVGLL 119
            L D       ++ +LDL LN  + T+       +   L +++LQ N +   +  +V + 
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VF 190

Query: 120 THLKVLHFQFNQLKLL 135
             LK L    N+L  +
Sbjct: 191 AKLKTLDLSSNKLAFM 206

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 63  LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG-KIPLEVGLLTH 121
           +S  S S      ++ L+ N          G  S++ Y+ L+ N++              
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 122 LKVLHFQFNQLKLL 135
           L+ L+ Q+N +  +
Sbjct: 171 LEHLNLQYNFIYDV 184

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
                   S   +  LDLS N       + +   +KL  ++L SN L   + L    L+ 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL--ESLST 81

Query: 122 LKVLHFQFNQLKLL 135
           L+ L    N ++ L
Sbjct: 82  LRTLDLNNNYVQEL 95

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
            +S    + F +L  L+LS N  L      + +LS L  + L +N +      E+ +   
Sbjct: 48  QISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPS 100

Query: 122 LKVLHFQFNQLKLL 135
           ++ LH   N +  +
Sbjct: 101 IETLHAANNNISRV 114

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 10/68 (14%), Positives = 24/68 (35%)

Query: 68  FSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127
             +  +     ++ +     + S   +   +  + L  N LS     ++   T L++L+ 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 128 QFNQLKLL 135
             N L   
Sbjct: 66  SSNVLYET 73

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + L+   +         +S   L HL+L  N F+  +  Q+   +KL  + L SN+L+  
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSNKLA-F 205

Query: 112 IPLEVGLLTHLKVLHFQFNQLKLL 135
           +  E      +  +  + N+L L+
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLVLI 229

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.9 bits (115), Expect = 6e-07
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
             ++  QL  L L+ N         IG L+ L+ + L  N ++   PL    L+ +    
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPL--ASLSKMDSAD 339

Query: 127 FQFNQLK 133
           F    +K
Sbjct: 340 FANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 8e-07
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
           +     +L  L++  N    +  S + NLS+L+ + L +NQL  +    +G LT+L  L 
Sbjct: 260 AVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 127 FQFNQLK 133
              N + 
Sbjct: 318 LSQNHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 8e-07
 Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
             ++  ++  L+L  N    +  S + N++ L+Y+++  +++    P+    LT L  L 
Sbjct: 127 PLANLTKMYSLNLGAN-HNLSDLSPLSNMTGLNYLTVTESKVKDVTPI--ANLTDLYSLS 183

Query: 127 FQFNQLK 133
             +NQ++
Sbjct: 184 LNYNQIE 190

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.2 bits (108), Expect = 5e-06
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 68  FSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127
            S+  +L +L +  N    T  S + NL+ L  + L  + +S   PL    LT +  L+ 
Sbjct: 84  LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISPL--ANLTKMYSLNL 139

Query: 128 QFNQL 132
             N  
Sbjct: 140 GANHN 144

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 6e-06
 Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 49  VINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQL 108
            I   L+   ++  ++         +  L ++    + +I   I  L+ L Y++L  NQ+
Sbjct: 24  GIRAVLQKASVTDVVT---QEELESITKLVVAGEK-VASIQG-IEYLTNLEYLNLNGNQI 78

Query: 109 SGKIPLEVGLLTHLKVLHFQFNQLKLL 135
           +   PL    L  L  L+   N++  +
Sbjct: 79  TDISPL--SNLVKLTNLYIGTNKITDI 103

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
             +S   L +    +N      P  + N+++L+ + + +N+++   PL    L+ L  L 
Sbjct: 194 PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPL--ANLSQLTWLE 249

Query: 127 FQFNQLK 133
              NQ+ 
Sbjct: 250 IGTNQIS 256

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
             ++  QL  L++  N    +  + + +L+KL  +++ SNQ+S    L    L+ L  L 
Sbjct: 238 PLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISDISVL--NNLSQLNSLF 293

Query: 127 FQFNQLKLLVL 137
              NQL    +
Sbjct: 294 LNNNQLGNEDM 304

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
                  L +L+L+ N      P  + NL KL+ + + +N+++      +  LT+L+ L+
Sbjct: 61  GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELY 116

Query: 127 FQFNQLK 133
              + + 
Sbjct: 117 LNEDNIS 123

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
             S+   L +L ++ +       + I NL+ L  +SL  NQ+    PL    LT L    
Sbjct: 150 PLSNMTGLNYLTVTESKV--KDVTPIANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFT 205

Query: 127 FQFNQLK 133
              NQ+ 
Sbjct: 206 AYVNQIT 212

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 16/113 (14%)

Query: 34  CPCAWFGISCSDAG----------RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNG 83
           C C    + CSD G              + L+N  ++  + D  F +   L  L L  N 
Sbjct: 29  CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK 87

Query: 84  FLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLL 135
            +  I       L KL  + L  NQL     L   +   L+ L    N++  +
Sbjct: 88  -ISKISPGAFAPLVKLERLYLSKNQLKE---LPEKMPKTLQELRVHENEITKV 136

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGLLT 120
            +   S      L  L LS N  +  + +    N   L  + L +N+L  K+P  +    
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 263

Query: 121 HLKVLHFQFNQLKLL 135
           +++V++   N +  +
Sbjct: 264 YIQVVYLHNNNISAI 278

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGF-LGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGLL 119
            +    F+   Q++ ++L  N      I +     + KLSYI +    ++  IP   GL 
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP--QGLP 191

Query: 120 THLKVLHFQFNQLKLL 135
             L  LH   N++  +
Sbjct: 192 PSLTELHLDGNKITKV 207

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG------KIPLE 115
            + + S ++ P L  L L+ N  L  +P  + +   +  + L +N +S         P  
Sbjct: 230 AVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288

Query: 116 VGLLTHLKVLHFQFNQLKLLVL 137
                    +    N ++   +
Sbjct: 289 NTKKASYSGVSLFSNPVQYWEI 310

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           +  +++ L        F S   L++LD+S              LS L  + +  N     
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 112 IPLEV-GLLTHLKVLHFQFNQLK 133
              ++   L +L  L     QL+
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLE 483

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 8e-07
 Identities = 22/74 (29%), Positives = 29/74 (39%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
            L  +SF SFP+L  LDLS             +LS LS + L  N +          L+ 
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 122 LKVLHFQFNQLKLL 135
           L+ L      L  L
Sbjct: 102 LQKLVAVETNLASL 115

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 17/72 (23%), Positives = 27/72 (37%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
           T+ D ++ S   L  L L+ N            LS L  +      L+      +G L  
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 122 LKVLHFQFNQLK 133
           LK L+   N ++
Sbjct: 126 LKELNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEV-GLLT 120
                S      L +LDLS NG + T+ S    L +L ++  Q + L       V   L 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 121 HLKVLHFQFNQLKLL 135
           +L  L       ++ 
Sbjct: 422 NLIYLDISHTHTRVA 436

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 64  SDFSFSSFPQLVHLDLSLNG--FLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
           + FS    P L  LDLS NG  F G         + L Y+ L  N +   +      L  
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ 397

Query: 122 LKVLHFQFNQLKLL 135
           L+ L FQ + LK +
Sbjct: 398 LEHLDFQHSNLKQM 411

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 53  SLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKI 112
            +             F+    L  LDLS        P+   +LS L  +++ SNQL   +
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SV 509

Query: 113 PLEV-GLLTHLKVLHFQFNQL 132
           P  +   LT L+ +    N  
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGLLT 120
              +  F+    L  L ++ N F       I   L  L+++ L   QL    P     L+
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 121 HLKVLHFQFNQLKLL 135
            L+VL+   NQLK +
Sbjct: 495 SLQVLNMASNQLKSV 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQI--GNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV 124
           +F    QL HLD   +  L  +       +L  L Y+ +               L+ L+V
Sbjct: 391 NFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 125 LHFQFNQLKLLVL 137
           L    N  +   L
Sbjct: 450 LKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 13/65 (20%), Positives = 22/65 (33%)

Query: 71  FPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFN 130
                +LDLS N           +  +L  + L   ++          L+HL  L    N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 131 QLKLL 135
            ++ L
Sbjct: 87  PIQSL 91

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFL-GTIPSQIGNLSKLSYISLQSNQLSG 110
           +    T L+ +L +F       L  L+++ N      +P    NL+ L ++ L SN++  
Sbjct: 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 111 KIPLEVGLLTHLKV----LHFQFNQLKLL 135
               ++ +L  + +    L    N +  +
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 2/74 (2%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
            +    F    +L  L +S N  L  +      +  L  + L  N L   +         
Sbjct: 262 KIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 319

Query: 122 LKVLHFQFNQLKLL 135
           L+ L+   N +  L
Sbjct: 320 LENLYLDHNSIVTL 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL 125
              ++P LV +DLS N  L  I       + +L  + + +N+L   + L    +  LKVL
Sbjct: 243 WLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 300

Query: 126 HFQFNQLKLL 135
               N L  +
Sbjct: 301 DLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGLLT 120
           +L    F + P+L  L +S N  L  I        + L  + L SN+L+    +++ L+ 
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIP 186

Query: 121 HLKVLHFQFNQLKLL 135
            L   +  +N L  L
Sbjct: 187 SLFHANVSYNLLSTL 201

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSG 110
           ++ +N+ +   L      SF Q+  L+L+    +  I +        +  + +  N +  
Sbjct: 50  VTFKNSTMR-KLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIR- 106

Query: 111 KIPLEVGL-LTHLKVLHFQFNQLKLL 135
            +P  V   +  L VL  + N L  L
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSL 132

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 63  LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHL 122
           L+    S  P L H ++S N       S +     +  +    N ++    +   +   L
Sbjct: 177 LTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINV---VRGPVNVEL 228

Query: 123 KVLHFQFNQL 132
            +L  Q N L
Sbjct: 229 TILKLQHNNL 238

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 65  DFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV 124
           +      P L  LDLS N  L  +        +L  + L  N +     L++     LK 
Sbjct: 288 NLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKN 343

Query: 125 LHFQFNQL 132
           L    N  
Sbjct: 344 LTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 50  INISLRNTGLSGT-LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQL 108
           I I++     S   ++        +L  L L  N    T  + + N   L  + L  N+L
Sbjct: 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNEL 260

Query: 109 SGKIPLEV-GLLTHLKVLHFQFNQLKLL 135
             KI       +  L+ L+   N+L  L
Sbjct: 261 E-KIMYHPFVKMQRLERLYISNNRLVAL 287

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 47.2 bits (113), Expect = 9e-07
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 136 VLVLEVIKGKHPRDFLCSILSSS---------LTKDVALDEMLDPRLPTSSCSVQEKLIS 186
           V++LE+I G+   D                  L K+  L+ ++D  L        E++  
Sbjct: 223 VMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQ--GNYKDEEVEQ 280

Query: 187 IMGVAFPCLNESPVSRPTMQTV 208
           ++ VA  C   SP+ RP M  V
Sbjct: 281 LIQVALLCTQSSPMERPKMSEV 302

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 9e-07
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 2/74 (2%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
            +    F    +L  L +S N  L  +      +  L  + L  N L   +         
Sbjct: 268 KIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 325

Query: 122 LKVLHFQFNQLKLL 135
           L+ L+   N +  L
Sbjct: 326 LENLYLDHNSIVTL 339

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 7e-06
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL 125
              ++P LV +DLS N  L  I       + +L  + + +N+L   + L    +  LKVL
Sbjct: 249 WLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 306

Query: 126 HFQFNQLKLL 135
               N L  +
Sbjct: 307 DLSHNHLLHV 316

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSG 110
           ++ +N+ +   L      SF Q+  L+L+    +  I +        +  + +  N +  
Sbjct: 56  VTFKNSTMR-KLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIR- 112

Query: 111 KIPLEVGL-LTHLKVLHFQFNQLKLL 135
            +P  V   +  L VL  + N L  L
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSL 138

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGLLT 120
           +L    F + P+L  L +S N  L  I        + L  + L SN+L+    +++ L+ 
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIP 192

Query: 121 HLKVLHFQFNQLKLL 135
            L   +  +N L  L
Sbjct: 193 SLFHANVSYNLLSTL 207

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 63  LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHL 122
           L+    S  P L H ++S N       S +     +  +    N ++    +   +   L
Sbjct: 183 LTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINV---VRGPVNVEL 234

Query: 123 KVLHFQFNQL 132
            +L  Q N L
Sbjct: 235 TILKLQHNNL 244

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 50  INISLRNTGLSGT-LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQL 108
           I I++     S   ++        +L  L L  N    T  + + N   L  + L  N+L
Sbjct: 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNEL 266

Query: 109 SGKIPLEV-GLLTHLKVLHFQFNQLKLL 135
             KI       +  L+ L+   N+L  L
Sbjct: 267 E-KIMYHPFVKMQRLERLYISNNRLVAL 293

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGLLT 120
            +       + +L  L L  N  +  I +     L  L  + L +N+LS ++P  +  L 
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264

Query: 121 HLKVLHFQFNQLK 133
            L+V++   N + 
Sbjct: 265 LLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 16/113 (14%)

Query: 34  CPCAWFGISCSDAG----------RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNG 83
           C C    + CSD G              + L+N  +S  L    F     L  L L  N 
Sbjct: 31  CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNK 89

Query: 84  FLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLL 135
            +  I  +    L KL  + +  N L     +   L + L  L    N+++ +
Sbjct: 90  -ISKIHEKAFSPLRKLQKLYISKNHLVE---IPPNLPSSLVELRIHDNRIRKV 138

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEV----- 116
            + + S S  P L  L L  N  L  +P+ + +L  L  + L +N ++ K+ +       
Sbjct: 231 MIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVG 288

Query: 117 --GLLTHLKVLHFQFNQLKLLVL 137
                 +   +    N +    +
Sbjct: 289 FGVKRAYYNGISLFNNPVPYWEV 311

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGF-LGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLT 120
            +    FS    +  +++  N            +  KL+Y+ +   +L+  IP    L  
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIP--KDLPE 193

Query: 121 HLKVLHFQFNQLKLL 135
            L  LH   N+++ +
Sbjct: 194 TLNELHLDHNKIQAI 208

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
                  + HLDLS N  L  +P  +  L  L  +    N L   +   V  L  L+ L 
Sbjct: 458 HLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELL 514

Query: 127 FQFNQLK 133
              N+L+
Sbjct: 515 LCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG-KIPLEVGLLTHLKVL 125
           + ++   L  L  S N  L  +   + NL +L  + L +N+L        +     L +L
Sbjct: 481 ALAALRCLEVLQASDN-ALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538

Query: 126 HFQFNQL 132
           + Q N L
Sbjct: 539 NLQGNSL 545

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)

Query: 68  FSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGL---LTHLKV 124
             + P L  LDLS N  L ++P     L  L+ + +  N+L+    L +G    L  L+ 
Sbjct: 73  DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTS---LPLGALRGLGELQE 128

Query: 125 LHFQFNQLKLL 135
           L+ + N+LK L
Sbjct: 129 LYLKGNELKTL 139

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
           T S  +   + +L  L+L     L  +    G L  L  + L  NQL   +PL    L  
Sbjct: 45  TFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPA 101

Query: 122 LKVLHFQFNQLKLL 135
           L VL   FN+L  L
Sbjct: 102 LTVLDVSFNRLTSL 115

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEV-GLL 119
           +L   +     +L  L L  N  L T+P  +     KL  +SL +N L+ ++P  +   L
Sbjct: 114 SLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171

Query: 120 THLKVLHFQFNQLK 133
            +L  L  Q N L 
Sbjct: 172 ENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 68  FSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGL---LTHLK 123
             + P L  LD+S N  L ++P      L +L  + L+ N+L     L  GL      L+
Sbjct: 96  GQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT---LPPGLLTPTPKLE 151

Query: 124 VLHFQFNQLKLL 135
            L    N L  L
Sbjct: 152 KLSLANNNLTEL 163

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLS 109
            + L    ++  L++ SFS    L  L +        I +     LS L  + L  NQ  
Sbjct: 34  YVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92

Query: 110 GKIPLEVGL---LTHLKVLHFQFNQLKLLVL 137
               LE G    L +L+VL      L   VL
Sbjct: 93  Q---LETGAFNGLANLEVLTLTQCNLDGAVL 120

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEV-GLL 119
            + D +F     L+ L+LS N FLG+I S++  NL KL  + L  N +   +  +    L
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGL 370

Query: 120 THLKVLHFQFNQLK 133
            +LK L    NQLK
Sbjct: 371 PNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 28  NVSSKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGT 87
                     + G+  S    V    L  + +   L    FS F  L  L L+ N  +  
Sbjct: 259 TNFKDPDNFTFKGLEASG---VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNE-INK 313

Query: 88  IPSQI-GNLSKLSYISLQSNQLSGKIPLEVGL---LTHLKVLHFQFNQLKLL 135
           I       L+ L  ++L  N L     ++  +   L  L+VL   +N ++ L
Sbjct: 314 IDDNAFWGLTHLLKLNLSQNFLGS---IDSRMFENLDKLEVLDLSYNHIRAL 362

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGF-LGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEV-GL 118
            L   +F+    L  L L+        +       L+ L  + L+ N +    P      
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152

Query: 119 LTHLKVLHFQFNQLKLL 135
           +    VL   FN++K +
Sbjct: 153 MRRFHVLDLTFNKVKSI 169

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 49  VINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQL 108
            +   L  T ++ T+S    +   Q+  L     G        +  L+ L+ I+  +NQL
Sbjct: 26  KMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQL 80

Query: 109 SGKIPLEVGLLTHLKVLHFQFNQLK 133
           +   PL    LT L  +    NQ+ 
Sbjct: 81  TDITPL--KNLTKLVDILMNNNQIA 103

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 53  SLRNTGLSGTLSDFS-FSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           SL+       ++D    ++   L  LD+S N    +  S +  L+ L  +   +NQ+S  
Sbjct: 157 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDI 214

Query: 112 IPLEVGLLTHLKVLHFQFNQLK 133
            PL  G+LT+L  L    NQLK
Sbjct: 215 TPL--GILTNLDELSLNGNQLK 234

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 63  LSDFS-FSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
           +S+ S  +    L +L+L+ N      P  I NL  L+Y++L  N +S   P+    LT 
Sbjct: 277 ISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTK 332

Query: 122 LKVLHFQFNQLK 133
           L+ L F  N++ 
Sbjct: 333 LQRLFFYNNKVS 344

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 68  FSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127
             +  +LV + ++ N       + + NL+ L+ ++L +NQ++   PL    LT+L  L  
Sbjct: 86  LKNLTKLVDILMNNNQI--ADITPLANLTNLTGLTLFNNQITDIDPL--KNLTNLNRLEL 141

Query: 128 QFNQLK 133
             N + 
Sbjct: 142 SSNTIS 147

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 41  ISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSY 100
           +S +D  +V  +     G+  ++          L  ++ S N      P  + NL+KL  
Sbjct: 40  VSQTDLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94

Query: 101 ISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLK 133
           I + +NQ++   PL    LT+L  L    NQ+ 
Sbjct: 95  ILMNNNQIADITPL--ANLTNLTGLTLFNNQIT 125

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
           + +S   L  LDL+ N      P  +  L+KL+ + L +NQ+S   PL    LT L  L 
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL--AGLTALTNLE 293

Query: 127 FQFNQLK 133
              NQL+
Sbjct: 294 LNENQLE 300

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 63  LSDFS-FSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
           +SD +       L  L L+ N         + +L+ L+ + L +NQ+S   PL    LT 
Sbjct: 211 ISDITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPL--SGLTK 266

Query: 122 LKVLHFQFNQLK 133
           L  L    NQ+ 
Sbjct: 267 LTELKLGANQIS 278

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
             S+   L +L L  N      P  + +L+KL  +   +N++S    L    LT++  L 
Sbjct: 304 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSL--ANLTNINWLS 359

Query: 127 FQFNQLK 133
              NQ+ 
Sbjct: 360 AGHNQIS 366

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
             ++   L  L L  N    T    + NL+ L+ + L SN +S    L    LT L+ L 
Sbjct: 107 PLANLTNLTGLTLFNNQI--TDIDPLKNLTNLNRLELSSNTISDISAL--SGLTSLQQLS 162

Query: 127 FQFNQLKLLVL 137
           F      L  L
Sbjct: 163 FGNQVTDLKPL 173

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 53  SLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKI 112
            +    +S        S    L+ L++S N    TI   +    ++  + L SN++   I
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SI 436

Query: 113 PLEVGLLTHLKVLHFQFNQLK 133
           P +V  L  L+ L+   NQLK
Sbjct: 437 PKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGL--- 118
            +     S     +HLD S N    T+    G+L++L  + LQ NQL  ++     +   
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQ 372

Query: 119 LTHLKVLHFQFNQLK 133
           +  L+ L    N + 
Sbjct: 373 MKSLQQLDISQNSVS 387

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 16/74 (21%), Positives = 30/74 (40%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
               + +  F  +   + +++G           +S   ++   +N L+  +    G LT 
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349

Query: 122 LKVLHFQFNQLKLL 135
           L+ L  Q NQLK L
Sbjct: 350 LETLILQMNQLKEL 363

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 66  FSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL 125
               +   L  LD+S N     +P       K+ +++L S  +     ++  +   L+VL
Sbjct: 381 EILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVL 436

Query: 126 HFQFNQLKLL 135
               N L   
Sbjct: 437 DVSNNNLDSF 446

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 8/82 (9%), Positives = 31/82 (37%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + + N      +    F+    L  L++            + ++  + +++L  ++ +  
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 112 IPLEVGLLTHLKVLHFQFNQLK 133
           + +   +L+ ++ L  +   L 
Sbjct: 188 LEIFADILSSVRYLELRDTNLA 209

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 44  SDAGRVINISLRNTGLSG----TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIG-NLSKL 98
           S+ G+V  +++R   +            +S   ++  + +  +  +  +P     +L  L
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSL 336

Query: 99  SYISLQSNQLSGKI---PLEVGLLTHLKVLHFQFNQLKLL 135
            ++ L  N +  +        G    L+ L    N L+ +
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 15/98 (15%), Positives = 32/98 (32%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG 110
            +   N   S  +S+        +  L +        + +    L K+  I+++++++  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324

Query: 111 KIPLEVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKHPR 148
                   L  L+ L    N +    L     KG  P 
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLG-TIPSQIGNLSKLSYISLQSNQLSG 110
           + L +  LS +LS   F     L +L+L  N +    + S   NL+ L  + + + +   
Sbjct: 79  LDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 111 KIPLEV-GLLTHLKVLHFQFNQLKLL 135
           +I       LT L  L  +   L+  
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNY 163

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 53  SLRNTGLSGT-LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
            +R   LS T +          L  LD+S N  L +       L +L  + +  N+L   
Sbjct: 411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNN-LDSFSL---FLPRLQELYISRNKLK-T 465

Query: 112 IPLEVGLLTHLKVLHFQFNQLKLL 135
           +P +  L   L V+    NQLK +
Sbjct: 466 LP-DASLFPVLLVMKISRNQLKSV 488

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 20/115 (17%)

Query: 42  SCSDAGRVINISLRN-----TGLSGT------------LSDFSFSSFPQLVHLDLSLNGF 84
           SCS  GR+      N       L+ T            ++  SF    QL  L+L     
Sbjct: 1   SCSFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 85  LGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEV-GLLTHLKVLHFQFNQLKLLVL 137
             TI  +   NL  L  + L S+++   +  +    L HL  L   F  L   VL
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVL 114

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK 111
           + L +     T+   +F + P L  LDL  +      P     L  L  + L    LS  
Sbjct: 53  LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

Query: 112 IPLEVGL--LTHLKVLHFQFNQLK 133
           +  +     L  L  L    NQ++
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIR 136

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-----GNLSKLSYISLQSN 106
           + L     S    D + S  P L  L L  N       +++       LS L  + L  N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 107 QLSGKIPLEVGLLTHLKVLHFQFNQLKLL 135
            L+   P     LT L+ L    N+L +L
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVL 519

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSG 110
           I L    L      +     P L  L L+ N F      Q       L  + L  N L  
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465

Query: 111 KIPLEVGL-----LTHLKVLHFQFNQLKLL 135
               E+       L+HL+VL+   N L  L
Sbjct: 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 17/72 (23%), Positives = 30/72 (41%)

Query: 64  SDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLK 123
           + F+  +   + HLDLS              L  L  ++L  N+++         L +L+
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317

Query: 124 VLHFQFNQLKLL 135
           VL+  +N L  L
Sbjct: 318 VLNLSYNLLGEL 329

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 14/74 (18%), Positives = 26/74 (35%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
           +L+   F +   L  L+L+ N            L  L  ++L  N L          L  
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339

Query: 122 LKVLHFQFNQLKLL 135
           +  +  Q N + ++
Sbjct: 340 VAYIDLQKNHIAII 353

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
            L    F     L  L L+ N      P    +L+ L  +SL SN+L+  +     L  +
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPAN 527

Query: 122 LKVLHFQFNQLKLL 135
           L++L    NQL   
Sbjct: 528 LEILDISRNQLLAP 541

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
            L   +F   P++ ++DL  N            L KL  + L+ N L+      +  +  
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPS 382

Query: 122 LKVLHFQFNQLKLL 135
           +  +    N+L  L
Sbjct: 383 IPDIFLSGNKLVTL 396

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 15/118 (12%)

Query: 31  SKICPCAWFGISCSDAG----------RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLS 80
            +IC C+     C ++             I +    T L   +   +FS F  L  +++S
Sbjct: 4   HRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEIS 62

Query: 81  LNGFLGTIPSQI-GNLSKLSYISLQ-SNQLSGKIPLEV-GLLTHLKVLHFQFNQLKLL 135
            N  L  I + +  NL KL  I ++ +N L   I  E    L +L+ L      +K L
Sbjct: 63  QNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHL 119

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 69  SSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQ 128
               +L  L +S N  L ++P     L  LS   +  NQL+ ++P  +  L+    ++ +
Sbjct: 238 VLPSELKELMVSGN-RLTSLPMLPSGLLSLS---VYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 129 FNQLKLL 135
            N L   
Sbjct: 293 GNPLSER 299

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 62  TLSDFSFSSFP----QLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVG 117
           ++SD   +S P    +L  L    N  L ++P     L +L   S+  NQL+  +P    
Sbjct: 147 SVSDNQLASLPALPSELCKLWAYNNQ-LTSLPMLPSGLQEL---SVSDNQLA-SLPTLPS 201

Query: 118 LLTHLKVLHFQFNQL 132
            L  L   + +   L
Sbjct: 202 ELYKLWAYNNRLTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 69  SSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQ 128
           +  P+L  L++S N  L ++P     L +LS  S     L         L + L  L   
Sbjct: 78  ALPPELRTLEVSGN-QLTSLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIF 129

Query: 129 FNQLKLL 135
            NQL  L
Sbjct: 130 GNQLTSL 136

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 69  SSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQ 128
                L  L +S N  L ++P+    L KL      +N+L+  +P    L + LK L   
Sbjct: 178 MLPSGLQELSVSDN-QLASLPTLPSELYKL---WAYNNRLT-SLP---ALPSGLKELIVS 229

Query: 129 FNQLKLL 135
            N+L  L
Sbjct: 230 GNRLTSL 236

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 72  PQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQ 131
             L  L +  N  L ++P     L +L   S+  NQL+  +P     L  L   +   NQ
Sbjct: 121 SGLCKLWIFGNQ-LTSLPVLPPGLQEL---SVSDNQLA-SLPALPSELCKLWAYN---NQ 172

Query: 132 LKLL 135
           L  L
Sbjct: 173 LTSL 176

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 69  SSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQ 128
                L+ L +  N  L  +P  + +LS  + ++L+ N LS      +  L  +      
Sbjct: 258 MLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS---ERTLQALREITSAPGY 313

Query: 129 FNQL 132
              +
Sbjct: 314 SGPI 317

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEV-GLL 119
            +   +F+    L  LDLS N  L ++       L +L  + L    L  ++   +   L
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGL 128

Query: 120 THLKVLHFQFNQLKLL 135
             L+ L+ Q N L+ L
Sbjct: 129 AALQYLYLQDNALQAL 144

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEV-GLL 119
            L D +F     L HL L  N  + ++P +    L  L  + L  N+++  +       L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDL 200

Query: 120 THLKVLHFQFNQLKLL 135
             L  L+   N L  L
Sbjct: 201 GRLMTLYLFANNLSAL 216

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSG 110
           + L +  L+  +S  +F   P L +LDLS N  L T+   +  +L  L  + L +N +  
Sbjct: 69  LLLSHNHLN-FISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIV- 125

Query: 111 KIPLEV-GLLTHLKVLHFQFNQLKLL 135
            +       +  L+ L+   NQ+   
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQISRF 151

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLS 109
            + L +  LS   ++++ +    L  L LS N  L  I S+    +  L Y+ L SN L 
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLH 101

Query: 110 GKIPLEV-GLLTHLKVLHFQFNQLKLL 135
             +   +   L  L+VL    N + ++
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIVVV 127

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEV---- 116
           TL +F FS    L  L L  N  +  +      ++++L  + L  NQ+S + P+E+    
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDG 159

Query: 117 GLLTHLKVLHFQFNQLKLL 135
             L  L +L    N+LK L
Sbjct: 160 NKLPKLMLLDLSSNKLKKL 178

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGLLT 120
           ++  ++F+  P L  LDL     L  I       LS L Y++L    L  +IP  +  L 
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLI 207

Query: 121 HLKVLHFQFNQLKLL 135
            L  L    N L  +
Sbjct: 208 KLDELDLSGNHLSAI 222

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSG 110
           ++L    +   +   SF     L  L LS N  + TI       L+ L+ + L  N+L+ 
Sbjct: 69  LNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLT- 125

Query: 111 KIPLEV-GLLTHLKVLHFQFNQLKLL 135
            IP      L+ LK L  + N ++ +
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESI 151

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEV-GLLT 120
            +S+ +F     L +L+L++   L  IP+ +  L KL  + L  N LS  I       L 
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQGLM 231

Query: 121 HLKVLHFQFNQLKLL 135
           HL+ L    +Q++++
Sbjct: 232 HLQKLWMIQSQIQVI 246

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEV-GLLTHLKV 124
           + +   +L  LDLS N  L  I       L  L  + +  +Q+   I       L  L  
Sbjct: 202 NLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVE 259

Query: 125 LHFQFNQLKLL 135
           ++   N L LL
Sbjct: 260 INLAHNNLTLL 270

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGLLT 120
           ++  ++F+  P L+ LDL     L  I       L  L Y++L    +   +P  +  L 
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLV 218

Query: 121 HLKVLHFQFNQLKLL 135
            L+ L    N    +
Sbjct: 219 GLEELEMSGNHFPEI 233

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSG 110
           ++L    +   +   +F     L  L L  N  +  I       L+ L+ + L  N L+ 
Sbjct: 80  LNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLT- 136

Query: 111 KIPLEV-GLLTHLKVLHFQFNQLKLL 135
            IP      L+ L+ L  + N ++ +
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESI 162

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQ-IGNLSKLSYISLQSNQLSGKIPLEV-GLLTHLKV 124
           + +    L  L++S N     I       LS L  + + ++Q+S  I       L  L  
Sbjct: 213 NLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVE 270

Query: 125 LHFQFNQLKLL 135
           L+   N L  L
Sbjct: 271 LNLAHNNLSSL 281

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 51  NISLRNTGLSGT-LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS 109
           N  L     +   L++   S   QL  LD  LN  +  +   +   ++L+ +    N+++
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

Query: 110 GKIPLEVGLLTHLKVLHFQFNQLKLL 135
               L+V     L  L+   N +  L
Sbjct: 184 E---LDVSQNKLLNRLNCDTNNITKL 206

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 63  LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHL 122
           ++    S    L +L    N  L  +   +  L+KL+Y++  +N+L+    L+V     L
Sbjct: 76  ITTLDLSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPLL 129

Query: 123 KVLHFQFNQLKLLVL 137
             L+   N L  + +
Sbjct: 130 TYLNCARNTLTEIDV 144

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 9/71 (12%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 63  LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHL 122
           L +   +   QL++        +  +   + + ++L  +  Q+  ++    L++     L
Sbjct: 266 LLEIDLTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKL 320

Query: 123 KVLHFQFNQLK 133
             L+    +L 
Sbjct: 321 VYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 63  LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHL 122
           ++    +   QL  LD S N  L  I   +  L++L+Y     N L+    L+V  L+ L
Sbjct: 203 ITKLDLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNPLT---ELDVSTLSKL 256

Query: 123 KVLHFQFNQLKLL 135
             LH     L  +
Sbjct: 257 TTLHCIQTDLLEI 269

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 41  ISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSY 100
           IS      + ++   N+ ++  ++         L  L  + N  + T+   +   + L+Y
Sbjct: 36  ISEEQLATLTSLDCHNSSIT-DMTGIE--KLTGLTKLICTSN-NITTLD--LSQNTNLTY 89

Query: 101 ISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLK 133
           ++  SN+L+    L+V  LT L  L+   N+L 
Sbjct: 90  LACDSNKLTN---LDVTPLTKLTYLNCDTNKLT 119

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 51  NISLRNTGLSGT-LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS 109
           N  L         +++   S  P+LV+L L+    L  +   + + +KL  +S  +  + 
Sbjct: 296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAHIQ 352

Query: 110 GKIPLEVGLLTHLKVLHFQFNQLKLL 135
                 VG +  L        Q   +
Sbjct: 353 -DFS-SVGKIPALNNNFEAEGQTITM 376

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLS 109
            I L    +   +   +FS + +L  +DLS N  +  +       L  L+ + L  N+++
Sbjct: 36  EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 110 GKIPLEV-GLLTHLKVLHFQFNQLKLL 135
            ++P  +   L  L++L    N++  L
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKINCL 119

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSG 110
           I L N  +S  L+  +F     L  L L  N  +  +P  +   L  L  + L +N+++ 
Sbjct: 61  IDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNANKIN- 117

Query: 111 KIPLEV-GLLTHLKVLHFQFNQLKLL 135
            + ++    L +L +L    N+L+ +
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTI 143

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNG--FLGTIPSQIGNLSKLSYISLQSNQLS 109
           + L +  L  +L    F    QL  L LS NG  F G         + L Y+ L  N + 
Sbjct: 33  LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91

Query: 110 GKIPLEVGLLTHLKVLHFQFNQLKLL 135
             +      L  L+ L FQ + LK +
Sbjct: 92  -TMSSNFLGLEQLEHLDFQHSNLKQM 116

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 53  SLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGK 111
            + +T       +  F+    L  L ++ N F       I   L  L+++ L   QL  +
Sbjct: 132 DISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-Q 189

Query: 112 IPLEV-GLLTHLKVLHFQFNQLKLL 135
           +       L+ L+VL+   N    L
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSL 214

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 54  LRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKI 112
            +++ L        F S   L++LD+S         + I   LS L  + +  N      
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENF 166

Query: 113 PLEV-GLLTHLKVLHFQFNQLKLL 135
             ++   L +L  L     QL+ L
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQL 190

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 28/184 (15%), Positives = 49/184 (26%), Gaps = 58/184 (31%)

Query: 58  GLSG---------TLSDFSF-SSFPQLVH-LDLSLNGFLGTIPSQIGNLSKLSY-ISLQS 105
           G+ G             +         +  L+L       +  + +  L KL Y I    
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL---KNCNSPETVLEMLQKLLYQIDPNW 213

Query: 106 NQL---SGKIPLEVGLLTHLKVLHFQFNQLK--LLVL--V--LEVIKGKHPRDFLCSIL- 155
                 S  I L +  +        +    +  LLVL  V   +        +  C IL 
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN---AFNLSCKILL 270

Query: 156 -----------SSSLTKDVALDEMLDP-------------------RLPTSSCSVQEKLI 185
                      S++ T  ++LD                         LP    +   + +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 186 SIMG 189
           SI+ 
Sbjct: 331 SIIA 334

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 136 VLVLEVIKGKHPRDFLCSILSSSLT-------KDVALDEMLDPRLPTSSCSVQEKLISIM 188
           V++ EV+  +            +L         +  L++++DP L       +  L    
Sbjct: 229 VVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLA-DKIRPES-LRKFG 286

Query: 189 GVAFPCLNESPVSRPTMQTVSQQLQ 213
             A  CL  S   RP+M  V  +L+
Sbjct: 287 DTAVKCLALSSEDRPSMGDVLWKLE 311

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEV-GLLT 120
            + D+SF    +L  L++S   +L T+         L+ +S+    L+  +P      L 
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLV 248

Query: 121 HLKVLHFQFNQLKLL 135
           +L+ L+  +N +  +
Sbjct: 249 YLRFLNLSYNPISTI 263

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEV-GLL 119
            L D+ F     L  L++  N  L  I  +    L+ L  ++L+   L+  IP E    L
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHL 175

Query: 120 THLKVLHFQFNQLKLL 135
             L VL  +   +  +
Sbjct: 176 HGLIVLRLRHLNINAI 191

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 11/110 (10%)

Query: 28  NVSSKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGT 87
                + P   +G++ +       +S+ +  L+  +   +      L  L+LS N  + T
Sbjct: 211 PYLDTMTPNCLYGLNLTS------LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP-IST 262

Query: 88  IPSQI-GNLSKLSYISLQSNQLSGKIPLEV-GLLTHLKVLHFQFNQLKLL 135
           I   +   L +L  I L   QL+  +       L +L+VL+   NQL  L
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTL 311

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
           + S    L  LD+S +    +I ++I  L K++ I L  N     I   +  L  LK L+
Sbjct: 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLN 165

Query: 127 FQFNQLK 133
            QF+ + 
Sbjct: 166 IQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 63  LSDFS-FSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH 121
            ++++  S    L  L +            +  L+ L+ + +  +     I  ++  L  
Sbjct: 78  ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 122 LKVLHFQFNQL 132
           +  +   +N  
Sbjct: 138 VNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
             ++ P++  +DLS NG +  I   +  L +L  +++Q + +     +E      L  L+
Sbjct: 131 KINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIED--FPKLNQLY 187

Query: 127 FQFNQL 132
                +
Sbjct: 188 AFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 41  ISCSDAGRVINISLRNTGLSGTLSDFS-FSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLS 99
           I+ +    +  I+L N  ++    D +       +  L ++      T  + I  LS L 
Sbjct: 38  ITEAQMNSLTYITLANINVT----DLTGIEYAHNIKDLTINNIHA--TNYNPISGLSNLE 91

Query: 100 YISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVL 137
            + +    ++      +  LT L +L    +     +L
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 9/98 (9%)

Query: 60  SGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLL 119
           +  +      S      L+ + N F  ++      L +L  + LQ N L         + 
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMT 399

Query: 120 THLKVLHFQFNQLKLLVLVLEVIKGKHPRDFLCSILSS 157
            ++  L      L  L          H  D  C+   S
Sbjct: 400 KNMSSLETLDVSLNSL--------NSHAYDRTCAWAES 429

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 63  LSDFSFSSFPQLVHLDLSLNGFLGTIP--SQIGNLSKLSYISLQSNQLSGKIPLEVGLLT 120
           L + S      L HLDLS N F   +P   + GNL+KL+++ L + +      L++  + 
Sbjct: 112 LQNISCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVA 167

Query: 121 HLKVLHFQFNQLKLLV 136
           HL +     + +   +
Sbjct: 168 HLHLSCILLDLVSYHI 183

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 71  FPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFN 130
            PQ+  L+++ N  L ++P    +L  L       N+LS  +P     L HL V +   N
Sbjct: 79  PPQITVLEITQNA-LISLPELPASLEYL---DACDNRLS-TLPELPASLKHLDVDN---N 130

Query: 131 QLKLL 135
           QL +L
Sbjct: 131 QLTML 135

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 6e-05
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 69  SSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQ 128
                L HLD+  N  L  +P     L  ++     +NQL+  +P    L T L+VL  +
Sbjct: 117 ELPASLKHLDVDNNQ-LTMLPELPALLEYIN---ADNNQLT-MLP---ELPTSLEVLSVR 168

Query: 129 FNQLKLL 135
            NQL  L
Sbjct: 169 NNQLTFL 175

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 74  LVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQL 132
            +      N  +  IP  I +L     I L+ N LS +I   +   T     H      
Sbjct: 209 EIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 20/82 (24%), Positives = 27/82 (32%), Gaps = 16/82 (19%)

Query: 69  SSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPL-------------- 114
              P L  L  S N  L  +P    +L  L   +     LS   PL              
Sbjct: 88  ELPPHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146

Query: 115 -EVGLLTHLKVLHFQFNQLKLL 135
            E+   + LK++    N LK L
Sbjct: 147 PELQNSSFLKIIDVDNNSLKKL 168

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
              +   L  +D+  N  L  +P    +L  +   +  +NQL  ++P E+  L  L  ++
Sbjct: 148 ELQNSSFLKIIDVDNN-SLKKLPDLPPSLEFI---AAGNNQLE-ELP-ELQNLPFLTAIY 201

Query: 127 FQFNQLKLL 135
              N LK L
Sbjct: 202 ADNNSLKKL 210

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH 126
              + P L  +    N  L  +P    +L  +      +N L      E+  L  L  ++
Sbjct: 190 ELQNLPFLTAIYADNN-SLKKLPDLPLSLESI---VAGNNILE--ELPELQNLPFLTTIY 243

Query: 127 FQFNQLKLL 135
              N LK L
Sbjct: 244 ADNNLLKTL 252

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 69  SSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQ 128
              P L  +    N  L  +P  + NL  L+ I   +N L  K+P    L   L+ +   
Sbjct: 170 DLPPSLEFIAAGNN-QLEELPE-LQNLPFLTAIYADNNSLK-KLP---DLPLSLESIVAG 223

Query: 129 FNQLKLL 135
            N L+ L
Sbjct: 224 NNILEEL 230

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.8 bits (98), Expect = 7e-05
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 4/86 (4%)

Query: 54  LRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIP 113
           +        L++      P L  L ++    L     Q+     LS + L  N   G+  
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 114 LEVGL----LTHLKVLHFQFNQLKLL 135
           L   L       L+VL  +   ++  
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETP 216

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL 125
             ++  QL  LDLS N       +      S+L+ ++L    L     +  GL   L VL
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ---VPKGLPAKLSVL 279

Query: 126 HFQFNQLKLLVLVLE 140
              +N+L       E
Sbjct: 280 DLSYNRLDRNPSPDE 294

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEV-GLL 119
            L  +SF SFP+L  LDLS    + TI      +LS LS + L  N +   + L     L
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGL 99

Query: 120 THLKVLHFQFNQLKLL 135
           + L+ L      L  L
Sbjct: 100 SSLQKLVAVETNLASL 115

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 9e-05
 Identities = 14/85 (16%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 49  VINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQL 108
            I  +L+   ++  ++    +    +  +  + +  + ++   I  L  ++ + L  N+L
Sbjct: 23  TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNGNKL 77

Query: 109 SGKIPLEVGLLTHLKVLHFQFNQLK 133
           +   PL    L +L  L    N++K
Sbjct: 78  TDIKPLT--NLKNLGWLFLDENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 66  FSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL 125
           F   +F + +  +L        +      L+ +  I   ++ +   +   +  L ++  L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKL 70

Query: 126 HFQFNQLK 133
               N+L 
Sbjct: 71  FLNGNKLT 78

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 68  FSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF 127
               PQL  L L  N    T  + +  L+KL  +SL+ NQ+S  +PL    LT L+ L+ 
Sbjct: 127 LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVPLAG--LTKLQNLYL 182

Query: 128 QFNQLK 133
             N + 
Sbjct: 183 SKNHIS 188

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEV-GLL 119
           TL     S++  L  +DLS N  + T+ +Q   N+++L  + L  N+L   IP      L
Sbjct: 44  TLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGL 101

Query: 120 THLKVLHFQFNQLK 133
             L++L    N + 
Sbjct: 102 KSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 77  LDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGL---LTHLKVLHFQFNQLK 133
           L L  N     +P ++ N   L+ I L +N++S    L       +T L  L   +N+L+
Sbjct: 36  LYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRIST---LSNQSFSNMTQLLTLILSYNRLR 91

Query: 134 LL 135
            +
Sbjct: 92  CI 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 67  SFSSFPQLVHLDLSLNGFLGTIPSQ-IGNLSKLSYISLQSNQLSGKIPLEV-GLLTHLKV 124
                  L  L +     L  +  + +  L +L  +++  + L   +  +       L  
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSR 84

Query: 125 LHFQFNQLKLL 135
           L+  FN L+ L
Sbjct: 85  LNLSFNALESL 95

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 15/84 (17%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSG 110
           I+  N  ++  + + +F     +  + L+ N  L  +  ++   L  L  + L+SN+++ 
Sbjct: 62  INFSNNKIT-DIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRIT- 118

Query: 111 KIPLEV-GLLTHLKVLHFQFNQLK 133
            +  +    L+ +++L    NQ+ 
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLS 109
            + L N   +   +   F   PQL  ++ S N  +  I        S ++ I L SN+L 
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 110 GKIPLEVGL---LTHLKVLHFQFNQLKLL 135
               ++  +   L  LK L  + N++  +
Sbjct: 95  N---VQHKMFKGLESLKTLMLRSNRITCV 120

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEV-GLL 119
            +S+        L  L L+ NG + TI      +L  L ++ L  N LS  +       L
Sbjct: 66  YISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPL 123

Query: 120 THLKVLHFQFNQLKLL 135
           + L  L+   N  K L
Sbjct: 124 SSLTFLNLLGNPYKTL 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 51  NISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLS 109
            + L +  L    SD  F   P LV L+L  N  L  I        S +  + L  N++ 
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKIK 91

Query: 110 GKIPLEVGL---LTHLKVLHFQFNQLK 133
               +   +   L  LK L+   NQ+ 
Sbjct: 92  E---ISNKMFLGLHQLKTLNLYDNQIS 115

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 77  LDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGL---LTHLKVLHFQFNQLK 133
           LDL  N            L+ L+ + L  N+L     L  G+   LT L  L+   NQL+
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS---LPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 134 LL 135
            L
Sbjct: 90  SL 91

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 8/76 (10%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEVGL-- 118
            L    F S   L  L L  N  LG +P  +  +L++L+ + L +NQL+    L   +  
Sbjct: 54  KLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTV---LPSAVFD 109

Query: 119 -LTHLKVLHFQFNQLK 133
            L HLK L    N+L 
Sbjct: 110 RLVHLKELFMCCNKLT 125

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 77  LDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGL---LTHLKVLHFQFNQLK 133
           L L  N      P    +L  L  + L SNQL     L VG+   LT L VL    NQL 
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA---LPVGVFDSLTQLTVLDLGTNQLT 101

Query: 134 LL 135
           +L
Sbjct: 102 VL 103

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 62  TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPLEV-GLL 119
           +L    F S  +L +L L  N  L ++P  +   L+ L  + L +NQL  ++P      L
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKL 180

Query: 120 THLKVLHFQFNQLK 133
           T LK L    NQLK
Sbjct: 181 TELKTLKLDNNQLK 194

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 38.8 bits (89), Expect = 8e-04
 Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 26/144 (18%)

Query: 50  INISLRNTGLSGTLSD----FSFSSFPQLVHLDLSLNGFLGTIPSQIGN---LSKLSYIS 102
           + + + + G  G ++     FS   FP L  L +        +         L +L  + 
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285

Query: 103 LQSNQLSGK----IPLEVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKHPRDFLCSILSSS 158
           + +  L+ +    +   V  + HLK ++ ++N L                D +   L  S
Sbjct: 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL---------------SDEMKKELQKS 330

Query: 159 LTKDVALDEMLDPRLPTSSCSVQE 182
           L   + + +  +     S   + E
Sbjct: 331 LPMKIDVSDSQEYDDDYSYPMITE 354

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.81
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.78
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.66
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.62
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.6
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.52
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.5
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.46
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.46
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.46
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.46
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.45
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.44
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.43
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.43
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.43
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.42
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.39
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.37
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.37
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.37
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.37
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.36
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.34
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.33
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.32
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.32
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.29
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.27
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.27
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.27
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.26
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.24
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.24
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.22
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.22
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.2
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.2
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.16
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.1
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.1
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.1
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.05
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.03
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.03
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.03
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.02
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.98
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.97
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.96
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.96
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.96
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.95
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.95
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.94
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.94
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.93
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.91
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.9
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.81
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.81
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.81
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.78
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.77
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.75
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.72
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.72
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.71
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.66
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.66
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.59
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.58
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.47
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.37
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.32
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.25
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.83
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.77
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.7
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.61
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.57
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.39
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.15
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.0
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.9
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.49
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.37
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.82
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.58
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.25
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.0
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	94.96
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	94.43
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.42
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	94.36
4aoj_A	329	High affinity nerve growth factor receptor; transf	93.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.22
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	93.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.96
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.47
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	91.39
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	89.97
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	89.32
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	89.12
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	87.96
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	86.79
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	86.56
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	86.28
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	86.1
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	86.02
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	84.06
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	83.81
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	83.78
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	83.78
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	83.68
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	83.43
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	83.22
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	82.97
3q4u_A	301	Activin receptor type-1; structural genomics conso	82.88
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	82.75
3pls_A	298	Macrophage-stimulating protein receptor; protein k	82.36
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	82.31
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	82.19
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	82.09
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	81.98
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	81.57
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	80.58
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	80.39
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	80.36
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	80.27
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	80.25
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	80.23
3soc_A	322	Activin receptor type-2A; structural genomics cons	80.14

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=1.2e-22  Score=166.37  Aligned_cols=128  Identities=31%  Similarity=0.538  Sum_probs=114.5

Q ss_pred             ChhhhhhhhcccCCCCCCCCCCcCCCCCCCCCCcCcc--cceeeeCCC---CCeEEEEecCCCCcc--ccCccccCCCCC
Q 035742            1 ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCA--WFGISCSDA---GRVINISLRNTGLSG--TLSDFSFSSFPQ   73 (214)
Q Consensus         1 ~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~--w~gv~c~~~---~~L~~L~L~~n~l~g--~~p~~~~~~l~~   73 (214)
                      ++||++||+++.++ . .+++| ..+++      +|.  |.||+|...   ++|+.|+|++|.++|  .+| ..|..+++
T Consensus         8 ~~aL~~~k~~~~~~-~-~l~~W-~~~~~------~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~-~~l~~l~~   77 (313)
T 1ogq_A            8 KQALLQIKKDLGNP-T-TLSSW-LPTTD------CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPY   77 (313)
T ss_dssp             HHHHHHHHHHTTCC-G-GGTTC-CTTSC------TTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GGGGGCTT
T ss_pred             HHHHHHHHHhcCCc-c-cccCC-CCCCC------CCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccC-hhHhCCCC
Confidence            47999999999653 3 68999 45566      787  999999854   799999999999998  899 89999999


Q ss_pred             CcEEeCcC-CcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742           74 LVHLDLSL-NGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus        74 L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~  138 (214)
                      |++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..|.++++|++|++++|++++.+|.
T Consensus        78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  143 (313)
T 1ogq_A           78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP  143 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred             CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence            99999995 999999999999999999999999999999999999999999999999999987774

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=1.1e-20  Score=168.46  Aligned_cols=129  Identities=21%  Similarity=0.234  Sum_probs=115.1

Q ss_pred             ChhhhhhhhcccCCCCCCCC-------CCcCCCCCCCCCCcCccc---ceeeeCCCCCeEEEEecCCCCccccCccccCC
Q 035742            1 ADALLKWKASLQSHNRSLLP-------SWTNATTNVSSKICPCAW---FGISCSDAGRVINISLRNTGLSGTLSDFSFSS   70 (214)
Q Consensus         1 ~~~l~~~~~~~~~~~~~~~~-------~W~~~~~~~~~~~~~c~w---~gv~c~~~~~L~~L~L~~n~l~g~~p~~~~~~   70 (214)
                      ++||.++|.++.++.|....       +| ..+++      +|.|   .||+|+..++|+.|+|++++++|.+| +.++.
T Consensus        32 ~~aL~~~~~~~~~~~w~~~~~~~~~~~~W-~~~~~------~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp-~~l~~  103 (636)
T 4eco_A           32 YLALKEIWDALNGKNWSQQGFGTQPGANW-NFNKE------LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP-DAIGQ  103 (636)
T ss_dssp             HHHHHHHHHHTTGGGCCCCC------CCC-CCSSC------GGGTTCCTTEEECTTCCEEEEECTTSCCEEEEC-GGGGG
T ss_pred             HHHHHHHHHHcCCCCcccCCcCCccCCCC-CCCCC------cccccCCCCeEEcCCCCEEEEEecCcccCCcCC-hHHhc
Confidence            36999999999877666443       79 46666      9999   99999877899999999999999999 99999


Q ss_pred             CCCCcEEeCcCCc-------------------------------------------------------------------
Q 035742           71 FPQLVHLDLSLNG-------------------------------------------------------------------   83 (214)
Q Consensus        71 l~~L~~L~l~~n~-------------------------------------------------------------------   83 (214)
                      +++|+.|++++|.                                                                   
T Consensus       104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l  183 (636)
T 4eco_A          104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL  183 (636)
T ss_dssp             CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred             CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence            9999999999884                                                                   


Q ss_pred             -----------CcCCChhhhhCCcccceeeccccccccC-----------------CCcccc--ccccchhhhcccccce
Q 035742           84 -----------FLGTIPSQIGNLSKLSYISLQSNQLSGK-----------------IPLEVG--LLTHLKVLHFQFNQLK  133 (214)
Q Consensus        84 -----------l~~~~p~~~~~l~~L~~L~ls~N~l~g~-----------------~p~~~~--~l~~L~~L~l~~N~l~  133 (214)
                                 ++| +|..++++++|++|++++|.++|.                 +|..++  ++++|++|++++|++.
T Consensus       184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~  262 (636)
T 4eco_A          184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL  262 (636)
T ss_dssp             CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred             hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence                       445 888999999999999999999985                 999999  9999999999999999


Q ss_pred             eecch
Q 035742          134 LLVLV  138 (214)
Q Consensus       134 g~~p~  138 (214)
                      |.+|.
T Consensus       263 ~~~p~  267 (636)
T 4eco_A          263 TKLPT  267 (636)
T ss_dssp             SSCCT
T ss_pred             ccChH
Confidence            98885

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.81  E-value=3.5e-20  Score=168.38  Aligned_cols=128  Identities=29%  Similarity=0.487  Sum_probs=109.6

Q ss_pred             ChhhhhhhhcccCCCCCCCCCCcCCCCCCCCCCcCcccceeeeCCCCCeEEEEecCCCCccc---cCc------------
Q 035742            1 ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGT---LSD------------   65 (214)
Q Consensus         1 ~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~w~gv~c~~~~~L~~L~L~~n~l~g~---~p~------------   65 (214)
                      |+||++||+++.++ . .+++| ..+++      +|.|.||+|+ .++|+.|+|+++.+.|.   +|.            
T Consensus        14 ~~all~~k~~~~~~-~-~l~~W-~~~~~------~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~   83 (768)
T 3rgz_A           14 IHQLISFKDVLPDK-N-LLPDW-SSNKN------PCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF   83 (768)
T ss_dssp             HHHHHHHHTTCSCT-T-SSTTC-CTTSC------GGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred             HHHHHHHHhhCCCc-c-cccCC-CCCCC------CcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence            57999999999854 4 89999 46666      9999999998 68999999999999886   441            


Q ss_pred             ----------cccCCCCCCcEEeCcCCcCcCCChh--hhhCCcccceeeccccccccCCCccc-cccccchhhhcccccc
Q 035742           66 ----------FSFSSFPQLVHLDLSLNGFLGTIPS--QIGNLSKLSYISLQSNQLSGKIPLEV-GLLTHLKVLHFQFNQL  132 (214)
Q Consensus        66 ----------~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~ls~N~l~g~~p~~~-~~l~~L~~L~l~~N~l  132 (214)
                                ..|..+++|++|++++|.++|.+|.  .++++++|++|++++|.+.+.+|..+ .++++|++|++++|++
T Consensus        84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  163 (768)
T 3rgz_A           84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI  163 (768)
T ss_dssp             CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred             CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence                      3677889999999999999988888  89999999999999999988888766 7888999999999998


Q ss_pred             eeecch
Q 035742          133 KLLVLV  138 (214)
Q Consensus       133 ~g~~p~  138 (214)
                      ++.+|.
T Consensus       164 ~~~~~~  169 (768)
T 3rgz_A          164 SGANVV  169 (768)
T ss_dssp             EEETHH
T ss_pred             CCcCCh
Confidence            887764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.78  E-value=1.6e-19  Score=165.50  Aligned_cols=144  Identities=19%  Similarity=0.241  Sum_probs=114.7

Q ss_pred             ChhhhhhhhcccCCCCCCCCCCcCCCCCCCC-CCcCccc------------ceeeeCCCCCeEEEEecCCCCccccCccc
Q 035742            1 ADALLKWKASLQSHNRSLLPSWTNATTNVSS-KICPCAW------------FGISCSDAGRVINISLRNTGLSGTLSDFS   67 (214)
Q Consensus         1 ~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~-~~~~c~w------------~gv~c~~~~~L~~L~L~~n~l~g~~p~~~   67 (214)
                      ++||++||.++.++      +|. .+.+|+. ..|.|.|            .||+|+..++|+.|+|++|++.|.+| +.
T Consensus       271 ~~ALl~~k~~l~~~------~W~-~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip-~~  342 (876)
T 4ecn_A          271 YKALKAIWEALDGK------NWR-YYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP-DA  342 (876)
T ss_dssp             HHHHHHHHHHTTGG------GCC-CCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEEC-GG
T ss_pred             HHHHHHHHHHcCCC------CCC-cCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCc-hH
Confidence            47999999999653      673 3321111 1123999            99999977899999999999999999 99


Q ss_pred             cCCCCCCcEEeC-cCCcCcCC-----------------------------------------------------------
Q 035742           68 FSSFPQLVHLDL-SLNGFLGT-----------------------------------------------------------   87 (214)
Q Consensus        68 ~~~l~~L~~L~l-~~n~l~~~-----------------------------------------------------------   87 (214)
                      ++++++|+.|+| ++|.++|.                                                           
T Consensus       343 l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~  422 (876)
T 4ecn_A          343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR  422 (876)
T ss_dssp             GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCC
T ss_pred             HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccc
Confidence            999999999999 77765444                                                           


Q ss_pred             -----------------ChhhhhCCcccceeecccccccc-----------------CCCcccc--ccccchhhhccccc
Q 035742           88 -----------------IPSQIGNLSKLSYISLQSNQLSG-----------------KIPLEVG--LLTHLKVLHFQFNQ  131 (214)
Q Consensus        88 -----------------~p~~~~~l~~L~~L~ls~N~l~g-----------------~~p~~~~--~l~~L~~L~l~~N~  131 (214)
                                       +|..++++++|+.|++++|.|+|                 .+|..++  ++++|++|+|++|+
T Consensus       423 l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~  502 (876)
T 4ecn_A          423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP  502 (876)
T ss_dssp             CCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT
T ss_pred             cchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC
Confidence                             88899999999999999999998                 3999988  99999999999999


Q ss_pred             ceeecch-hhhhcCCCCchhhh
Q 035742          132 LKLLVLV-LEVIKGKHPRDFLC  152 (214)
Q Consensus       132 l~g~~p~-~~~l~g~~p~~~~~  152 (214)
                      +.+.+|. +..++...-.++..
T Consensus       503 l~~~iP~~l~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          503 NMTQLPDFLYDLPELQSLNIAC  524 (876)
T ss_dssp             TCCSCCGGGGGCSSCCEEECTT
T ss_pred             CCccChHHHhCCCCCCEEECcC
Confidence            9998885 44444333333333

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.70  E-value=2e-18  Score=142.26  Aligned_cols=128  Identities=16%  Similarity=0.295  Sum_probs=102.6

Q ss_pred             ChhhhhhhhcccCCCCCCCCCCc---CCCCCCCCCCcCcccceeeeC---------CCCCeEEEEecCCCCccccCcccc
Q 035742            1 ADALLKWKASLQSHNRSLLPSWT---NATTNVSSKICPCAWFGISCS---------DAGRVINISLRNTGLSGTLSDFSF   68 (214)
Q Consensus         1 ~~~l~~~~~~~~~~~~~~~~~W~---~~~~~~~~~~~~c~w~gv~c~---------~~~~L~~L~L~~n~l~g~~p~~~~   68 (214)
                      ++||++||..+..++.+.+.+|.   ....+      .|.|.|+.|.         ...+++.|+|++|.++ .+| ..+
T Consensus        29 ~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~------~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp-~~l  100 (328)
T 4fcg_A           29 HDVLSQWQRHYNADRNRWHSAWRQANSNNPQ------IETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP-DQA  100 (328)
T ss_dssp             HHHHHHHHHHHHHCCTTHHHHHHHHTTTCTT------SCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC-SCG
T ss_pred             HHHHHHHHHhccCCchhhhhhhccccccccc------ccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC-hhh
Confidence            46999999998766556678884   22344      8999999995         2367889999999888 788 778


Q ss_pred             CCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742           69 SSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus        69 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~  138 (214)
                      ..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..++++++|++|++++|++.+.+|.
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~  168 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE  168 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence            88888888888888888 78888888888888888888888 7788888888888888888777766653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.68  E-value=1.3e-16  Score=122.74  Aligned_cols=108  Identities=24%  Similarity=0.301  Sum_probs=87.1

Q ss_pred             CCCCcCcccceeeeCC----------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccc
Q 035742           30 SSKICPCAWFGISCSD----------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLS   99 (214)
Q Consensus        30 ~~~~~~c~w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~   99 (214)
                      |-..|.|.|.++.|..          ..+++.|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|+
T Consensus         1 Cp~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   79 (208)
T 2o6s_A            1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPN-GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT   79 (208)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CcCCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCCh-hhhcccccCcEEECCCCccCccChhhcCCCCCcC
Confidence            3457899999999974          2368999999999985444 6688999999999999999866555678899999


Q ss_pred             eeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742          100 YISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus       100 ~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~  138 (214)
                      +|++++|++++..+..|..+++|++|++++|++++..+.
T Consensus        80 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  118 (208)
T 2o6s_A           80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG  118 (208)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             EEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHh
Confidence            999999999855555678888888899988888876653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=9.9e-17  Score=122.27  Aligned_cols=109  Identities=23%  Similarity=0.319  Sum_probs=96.7

Q ss_pred             CCCCcCcccceeeeCCC----------CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccc
Q 035742           30 SSKICPCAWFGISCSDA----------GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLS   99 (214)
Q Consensus        30 ~~~~~~c~w~gv~c~~~----------~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~   99 (214)
                      |-..|.|.|..+.|+..          .+++.|++++|.+++..+...|..+++|++|++++|.+++..|..|..+++|+
T Consensus         2 CP~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   81 (192)
T 1w8a_A            2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             CCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             cCCCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence            55789999999999842          38999999999998554412489999999999999999988899999999999


Q ss_pred             eeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742          100 YISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus       100 ~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~  138 (214)
                      +|++++|+|++..|..|..+++|++|++++|++++.+|.
T Consensus        82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  120 (192)
T 1w8a_A           82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence            999999999988888899999999999999999998774

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.66  E-value=2.1e-16  Score=118.27  Aligned_cols=109  Identities=20%  Similarity=0.227  Sum_probs=94.4

Q ss_pred             CCCCcCcccceeeeCC----------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccc
Q 035742           30 SSKICPCAWFGISCSD----------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLS   99 (214)
Q Consensus        30 ~~~~~~c~w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~   99 (214)
                      |-..|.|.|..+.|+.          ..+++.|+|++|.|++..| ..|..+++|++|++++|+|++..+..|..+++|+
T Consensus         3 CP~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~   81 (170)
T 3g39_A            3 CPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT   81 (170)
T ss_dssp             CC-CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CcCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence            5567899999999974          2478999999999997667 8899999999999999999976666789999999


Q ss_pred             eeeccccccccCCCccccccccchhhhcccccceeecchh
Q 035742          100 YISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLVL  139 (214)
Q Consensus       100 ~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~  139 (214)
                      +|++++|+|++..+..|..+++|++|+|++|.+++..+.+
T Consensus        82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l  121 (170)
T 3g39_A           82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI  121 (170)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred             EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence            9999999999666667999999999999999998876643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.66  E-value=2.3e-16  Score=118.39  Aligned_cols=108  Identities=26%  Similarity=0.301  Sum_probs=92.9

Q ss_pred             CCCCcCcccceeeeCC----------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccc
Q 035742           30 SSKICPCAWFGISCSD----------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLS   99 (214)
Q Consensus        30 ~~~~~~c~w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~   99 (214)
                      |-..|.|.|.++.|..          ..+++.|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|+
T Consensus         1 Cp~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   79 (177)
T 2o6r_A            1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT   79 (177)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CcCCCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCH-HHhcCcccccEEECCCCcceEeChhHccCCCccC
Confidence            4467899999999974          2479999999999995444 6789999999999999999966666689999999


Q ss_pred             eeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742          100 YISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus       100 ~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~  138 (214)
                      +|++++|++++..+..+..+++|++|++++|++++.++.
T Consensus        80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  118 (177)
T 2o6r_A           80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG  118 (177)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence            999999999966666789999999999999999976553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.64  E-value=6.3e-16  Score=120.97  Aligned_cols=119  Identities=21%  Similarity=0.214  Sum_probs=96.5

Q ss_pred             cCcccceeeeCC----------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeec
Q 035742           34 CPCAWFGISCSD----------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISL  103 (214)
Q Consensus        34 ~~c~w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  103 (214)
                      |.|.|.+|.|+.          ..+|+.|+|++|.+++..| ..|..+++|+.|++++|.+....+..|..+++|+.|++
T Consensus        17 ~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           17 CSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             CEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            499999999984          2478999999999997767 88999999999999999998555566889999999999


Q ss_pred             cccccccCCCccccccccchhhhcccccceeecchhhhhcCCCCchhhhh
Q 035742          104 QSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKHPRDFLCS  153 (214)
Q Consensus       104 s~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~g~~p~~~~~~  153 (214)
                      ++|+|++..+..|..+++|++|++++|+++..+..+..+....-.++..|
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC
Confidence            99999966666788999999999999999955444544444433344333

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=6.5e-16  Score=117.92  Aligned_cols=113  Identities=19%  Similarity=0.284  Sum_probs=99.0

Q ss_pred             CCCCcCcccceeeeCC----------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccc
Q 035742           30 SSKICPCAWFGISCSD----------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLS   99 (214)
Q Consensus        30 ~~~~~~c~w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~   99 (214)
                      |-..|.|.|..+.|+.          ..+++.|++++|.|+ .+| ..|..+++|+.|++++|.+++..+..|..+++|+
T Consensus         4 CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~   81 (193)
T 2wfh_A            4 CPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL   81 (193)
T ss_dssp             CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence            5567899999999974          237999999999998 899 8999999999999999999988788899999999


Q ss_pred             eeeccccccccCCCccccccccchhhhcccccceeecch-hhhhcC
Q 035742          100 YISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV-LEVIKG  144 (214)
Q Consensus       100 ~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~-~~~l~g  144 (214)
                      +|++++|+|++..|..|..+++|++|+|++|++++..+. +..+..
T Consensus        82 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  127 (193)
T 2wfh_A           82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA  127 (193)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred             EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcc
Confidence            999999999977788899999999999999999976653 444433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.62  E-value=3.8e-16  Score=141.87  Aligned_cols=104  Identities=29%  Similarity=0.471  Sum_probs=94.6

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+++.|+|++|.++|.+| ..++.++.|+.|++++|.++|.+|..++++++|+.|++++|+++|.+|..++.+++|++|
T Consensus       631 l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIP-KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             cccccEEECcCCcccccCC-HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence            3578999999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccceeecchhhhhcCCCCchh
Q 035742          126 HFQFNQLKLLVLVLEVIKGKHPRDF  150 (214)
Q Consensus       126 ~l~~N~l~g~~p~~~~l~g~~p~~~  150 (214)
                      ++++|+++|.||....+....+..+
T Consensus       710 ~ls~N~l~g~iP~~~~~~~~~~~~~  734 (768)
T 3rgz_A          710 DLSNNNLSGPIPEMGQFETFPPAKF  734 (768)
T ss_dssp             ECCSSEEEEECCSSSSGGGSCGGGG
T ss_pred             ECcCCcccccCCCchhhccCCHHHh
Confidence            9999999999997655544333333

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.62  E-value=1e-15  Score=119.07  Aligned_cols=109  Identities=20%  Similarity=0.274  Sum_probs=93.2

Q ss_pred             CCCCCcCcccceeeeCCC----------CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCccc
Q 035742           29 VSSKICPCAWFGISCSDA----------GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKL   98 (214)
Q Consensus        29 ~~~~~~~c~w~gv~c~~~----------~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L   98 (214)
                      .|-..|.|.|..+.|...          .+++.|++++|.|++..+ ..|..+++|+.|++++|.+++..|..|..+++|
T Consensus         4 ~CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L   82 (220)
T 2v9t_B            4 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL   82 (220)
T ss_dssp             CSCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred             CCCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence            356679999999999742          378999999999995444 689999999999999999998888999999999


Q ss_pred             ceeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742           99 SYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus        99 ~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~  138 (214)
                      ++|++++|+|+...+..|..+++|++|+|++|++++..|.
T Consensus        83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~  122 (220)
T 2v9t_B           83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD  122 (220)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence            9999999999954445578899999999999999987664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.60  E-value=1.8e-15  Score=117.74  Aligned_cols=109  Identities=21%  Similarity=0.236  Sum_probs=83.6

Q ss_pred             CCCCcCcccceeeeCCC----------CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccc
Q 035742           30 SSKICPCAWFGISCSDA----------GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLS   99 (214)
Q Consensus        30 ~~~~~~c~w~gv~c~~~----------~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~   99 (214)
                      |-..|.|.|..+.|+..          ..++.|+|++|.|++..+...|..+++|+.|++++|.+++..+..|..+++|+
T Consensus         5 CP~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~   84 (220)
T 2v70_A            5 CPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN   84 (220)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence            55678899999998741          25778888888888554424477888888888888888866666788888888


Q ss_pred             eeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742          100 YISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus       100 ~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~  138 (214)
                      +|++++|++++..+..|..+++|++|++++|++++..|.
T Consensus        85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  123 (220)
T 2v70_A           85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND  123 (220)
T ss_dssp             EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT
T ss_pred             EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh
Confidence            888888888866666678888888888888888877553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.57  E-value=6e-15  Score=110.74  Aligned_cols=110  Identities=15%  Similarity=0.169  Sum_probs=89.4

Q ss_pred             CCCCCcCcccceeeeCC----------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCccc
Q 035742           29 VSSKICPCAWFGISCSD----------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKL   98 (214)
Q Consensus        29 ~~~~~~~c~w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L   98 (214)
                      .|-..|.|....+.|+.          ..+|+.|+|++|.|++..| ..|..+++|+.|++++|+|++..+..|..+++|
T Consensus         5 ~CP~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L   83 (174)
T 2r9u_A            5 GCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL   83 (174)
T ss_dssp             SSCTTSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence            35566788777777763          2478899999999997667 889999999999999999996555557899999


Q ss_pred             ceeeccccccccCCCccccccccchhhhcccccceeecchh
Q 035742           99 SYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLVL  139 (214)
Q Consensus        99 ~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~  139 (214)
                      +.|++++|+|++..+..|..+++|++|++++|.+....+.+
T Consensus        84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~  124 (174)
T 2r9u_A           84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI  124 (174)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred             hEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence            99999999999555555899999999999999998765543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.52  E-value=9e-15  Score=132.18  Aligned_cols=129  Identities=22%  Similarity=0.222  Sum_probs=91.7

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|+|++|.+. .+| ..+..+++|+.|+|++|.|+ .+|..|+.+++|++|+|++|.|+ .+|..|+.+++|++|+
T Consensus       224 ~~L~~L~Ls~n~l~-~l~-~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NIS-ANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCEEECTTSCCS-CCC-GGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred             CCCcEEECCCCCCC-CCC-hhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence            45778888888888 777 67778888888888888888 78888888888888888888888 7888888888888888


Q ss_pred             cccccceeecchhhhhcCCCCchhhhhhcccccchhh-----------hhhhhcCCCCCCCcch
Q 035742          127 FQFNQLKLLVLVLEVIKGKHPRDFLCSILSSSLTKDV-----------ALDEMLDPRLPTSSCS  179 (214)
Q Consensus       127 l~~N~l~g~~p~~~~l~g~~p~~~~~~~~~~~~~~~~-----------~~~~~l~~~lp~~~~~  179 (214)
                      |++|.|+..+..+..+....-.++..|.+...++...           ...|.+.+.+|.....
T Consensus       300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~  363 (727)
T 4b8c_D          300 FFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRF  363 (727)
T ss_dssp             CCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---
T ss_pred             CCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccce
Confidence            8888887544445555555445555544443322211           2246667777776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.50  E-value=3.5e-14  Score=117.24  Aligned_cols=104  Identities=20%  Similarity=0.232  Sum_probs=82.5

Q ss_pred             CCCCc-CcccceeeeCCC------------CCeEEEEecC-CCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCC
Q 035742           30 SSKIC-PCAWFGISCSDA------------GRVINISLRN-TGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNL   95 (214)
Q Consensus        30 ~~~~~-~c~w~gv~c~~~------------~~L~~L~L~~-n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   95 (214)
                      |-..| .|.|..|.|...            .+|+.|+|++ |.|++..+ ..|.++++|+.|+|++|+|++..|..|.++
T Consensus         1 cp~~c~~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l   79 (347)
T 2ifg_A            1 CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVAPDAFHFT   79 (347)
T ss_dssp             CCSSSCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred             CCCcCccccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCccceeCHHHhcCC
Confidence            44568 899999999854            2488899986 88885555 778889999999999999988778888889


Q ss_pred             cccceeeccccccccCCCccccccccchhhhcccccceee
Q 035742           96 SKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLL  135 (214)
Q Consensus        96 ~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~  135 (214)
                      ++|+.|+|++|+|++..+..|..+. |+.|+|.+|.|...
T Consensus        80 ~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           80 PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             cCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            9999999999999854444555555 88899999988754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.46  E-value=4.7e-14  Score=107.35  Aligned_cols=93  Identities=19%  Similarity=0.242  Sum_probs=85.9

Q ss_pred             CCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742           45 DAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV  124 (214)
Q Consensus        45 ~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~  124 (214)
                      ...+|+.|+|++|.|++..| ..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++
T Consensus        52 ~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (192)
T 1w8a_A           52 RLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             GCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             cCCCCCEEECCCCCCCCcCH-hHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence            34689999999999997778 89999999999999999999888888999999999999999999999999999999999


Q ss_pred             hhcccccceeecch
Q 035742          125 LHFQFNQLKLLVLV  138 (214)
Q Consensus       125 L~l~~N~l~g~~p~  138 (214)
                      |++++|.+++..+.
T Consensus       131 L~L~~N~l~c~c~l  144 (192)
T 1w8a_A          131 LNLASNPFNCNCHL  144 (192)
T ss_dssp             EECTTCCBCCSGGG
T ss_pred             EEeCCCCccCcCcc
Confidence            99999999987653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.46  E-value=9.6e-14  Score=107.89  Aligned_cols=107  Identities=14%  Similarity=0.140  Sum_probs=89.0

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|+|++|.|++..+ ..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|
T Consensus        56 l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  134 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL  134 (220)
T ss_dssp             CTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred             CCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence            4589999999999996555 789999999999999999998888789999999999999999998889999999999999


Q ss_pred             hcccccceeecch-hhhhcCCCCchhhhh
Q 035742          126 HFQFNQLKLLVLV-LEVIKGKHPRDFLCS  153 (214)
Q Consensus       126 ~l~~N~l~g~~p~-~~~l~g~~p~~~~~~  153 (214)
                      +|++|++++..|. +..+....-.++..|
T Consensus       135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          135 SLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             ECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             ECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            9999999988663 444443333333333

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.46  E-value=1.8e-13  Score=108.10  Aligned_cols=89  Identities=27%  Similarity=0.290  Sum_probs=53.7

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +++.|+|++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++
T Consensus        36 ~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            46666666666664444 55666666666666666666555555666666666666666666444445555566666666


Q ss_pred             ccccceeecc
Q 035742          128 QFNQLKLLVL  137 (214)
Q Consensus       128 ~~N~l~g~~p  137 (214)
                      ++|++++..+
T Consensus       115 ~~N~l~~~~~  124 (251)
T 3m19_A          115 GGNQLKSLPS  124 (251)
T ss_dssp             CSSCCCCCCT
T ss_pred             CCCcCCCcCh
Confidence            6666554443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.46  E-value=6.1e-14  Score=113.75  Aligned_cols=106  Identities=25%  Similarity=0.337  Sum_probs=85.9

Q ss_pred             CCCCcCcccceeeeCCC----------CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcC--CChhhhhCCcc
Q 035742           30 SSKICPCAWFGISCSDA----------GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLG--TIPSQIGNLSK   97 (214)
Q Consensus        30 ~~~~~~c~w~gv~c~~~----------~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~   97 (214)
                      |-..|.|.|.++.|...          .+++.|++++|.++ .+|...|..+++|+.|++++|.++.  ..+..+..+++
T Consensus         1 CP~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~   79 (306)
T 2z66_A            1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS   79 (306)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred             CcCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccc
Confidence            45678999999999852          37999999999999 6763558999999999999999873  33677778888


Q ss_pred             cceeeccccccccCCCccccccccchhhhcccccceeecc
Q 035742           98 LSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVL  137 (214)
Q Consensus        98 L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p  137 (214)
                      |++|++++|.+. .+|..+..+++|++|++++|++++..+
T Consensus        80 L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~  118 (306)
T 2z66_A           80 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE  118 (306)
T ss_dssp             CCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTT
T ss_pred             cCEEECCCCccc-cChhhcCCCCCCCEEECCCCccccccc
Confidence            888888888887 567777788888888888888776544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.45  E-value=9.9e-14  Score=115.42  Aligned_cols=109  Identities=23%  Similarity=0.186  Sum_probs=90.5

Q ss_pred             CCCCCCcCcccceeeeCC----------CCCeEEEEecCCCCccccCccccC-CCCCCcEEeCcCCcCcCCChhhhhCCc
Q 035742           28 NVSSKICPCAWFGISCSD----------AGRVINISLRNTGLSGTLSDFSFS-SFPQLVHLDLSLNGFLGTIPSQIGNLS   96 (214)
Q Consensus        28 ~~~~~~~~c~w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~   96 (214)
                      ..|-..|.|.+..+.|..          ...++.|+|++|.|++..+ ..|. .+++|+.|++++|.|++..+..|..++
T Consensus        10 ~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~   88 (361)
T 2xot_A           10 VSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP   88 (361)
T ss_dssp             TTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcCCccChhhccCCC
Confidence            346677999999999974          2357899999999995545 6676 899999999999999877777899999


Q ss_pred             ccceeeccccccccCCCccccccccchhhhcccccceeecc
Q 035742           97 KLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVL  137 (214)
Q Consensus        97 ~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p  137 (214)
                      +|++|+|++|+|++..+..|..+++|++|+|++|++++..|
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  129 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR  129 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH
Confidence            99999999999986666678888999999999999887755

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.44  E-value=2.1e-13  Score=109.08  Aligned_cols=87  Identities=25%  Similarity=0.288  Sum_probs=40.8

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|++|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++
T Consensus        86 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           86 NLTYLILTGNQLQSLPN-GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             TCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCccCccCh-hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            45555555555543222 33445555555555555554333333444455555555555544333333444444444444


Q ss_pred             ccccceee
Q 035742          128 QFNQLKLL  135 (214)
Q Consensus       128 ~~N~l~g~  135 (214)
                      ++|++++.
T Consensus       165 ~~n~l~~~  172 (272)
T 3rfs_A          165 SYNQLQSL  172 (272)
T ss_dssp             CSSCCCCC
T ss_pred             CCCCcCcc
Confidence            44444443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.43  E-value=1.1e-13  Score=121.83  Aligned_cols=90  Identities=28%  Similarity=0.178  Sum_probs=79.1

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+++.|+|++|.|++..+ ..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCH-HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            378999999999995444 7899999999999999999977777899999999999999999966667789999999999


Q ss_pred             cccccceeecc
Q 035742          127 FQFNQLKLLVL  137 (214)
Q Consensus       127 l~~N~l~g~~p  137 (214)
                      +++|++++..+
T Consensus       131 Ls~N~l~~l~~  141 (635)
T 4g8a_A          131 AVETNLASLEN  141 (635)
T ss_dssp             CTTSCCCCSTT
T ss_pred             CCCCcCCCCCh
Confidence            99999987665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.43  E-value=6.9e-14  Score=121.88  Aligned_cols=99  Identities=19%  Similarity=0.180  Sum_probs=81.3

Q ss_pred             cCcccceeeeCC------------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCccccee
Q 035742           34 CPCAWFGISCSD------------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYI  101 (214)
Q Consensus        34 ~~c~w~gv~c~~------------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L  101 (214)
                      +.|.|.|+ |+.            ..+|++|++++|.+++..| ..|..+++|++|++++|.+++..|..|..+++|++|
T Consensus         2 ~~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   79 (549)
T 2z81_A            2 LSCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL   79 (549)
T ss_dssp             CEECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCCCce-EECCCCccccccccCCCCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence            46788887 652            2378999999999886666 788889999999999999887777888888999999


Q ss_pred             eccccccccCCCccccccccchhhhccccccee
Q 035742          102 SLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKL  134 (214)
Q Consensus       102 ~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g  134 (214)
                      ++++|.+++..|..|+++++|++|++++|++++
T Consensus        80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  112 (549)
T 2z81_A           80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT  112 (549)
T ss_dssp             ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred             ECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence            999999886666668888889999998888875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.43  E-value=1.9e-13  Score=106.15  Aligned_cols=92  Identities=21%  Similarity=0.143  Sum_probs=82.5

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|+|++|.+++..| ..|.++++|++|++++|.++...+..|..+++|+.|++++|++++..|..|..+++|++|
T Consensus        55 l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  133 (220)
T 2v9t_B           55 YKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL  133 (220)
T ss_dssp             CTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence            4589999999999997667 899999999999999999995555557899999999999999998888899999999999


Q ss_pred             hcccccceeecch
Q 035742          126 HFQFNQLKLLVLV  138 (214)
Q Consensus       126 ~l~~N~l~g~~p~  138 (214)
                      +|++|++++..+.
T Consensus       134 ~L~~N~l~~~~~~  146 (220)
T 2v9t_B          134 SLYDNKLQTIAKG  146 (220)
T ss_dssp             ECCSSCCSCCCTT
T ss_pred             ECCCCcCCEECHH
Confidence            9999999987764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.43  E-value=7.5e-14  Score=113.99  Aligned_cols=92  Identities=20%  Similarity=0.289  Sum_probs=80.4

Q ss_pred             CCCeEEEEecC-CCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742           46 AGRVINISLRN-TGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV  124 (214)
Q Consensus        46 ~~~L~~L~L~~-n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~  124 (214)
                      ..+|+.|++++ |.+.+.+| ..|..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus        75 l~~L~~L~L~~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             CCCCCeeeCCCCCcccccCC-hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence            35788999995 88888888 88899999999999999998888888999999999999999998888888888999999


Q ss_pred             hhcccccceeecch
Q 035742          125 LHFQFNQLKLLVLV  138 (214)
Q Consensus       125 L~l~~N~l~g~~p~  138 (214)
                      |++++|+++|.+|.
T Consensus       154 L~L~~N~l~~~~p~  167 (313)
T 1ogq_A          154 ITFDGNRISGAIPD  167 (313)
T ss_dssp             EECCSSCCEEECCG
T ss_pred             EECcCCcccCcCCH
Confidence            99999998877764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.43  E-value=1.1e-13  Score=117.79  Aligned_cols=108  Identities=21%  Similarity=0.198  Sum_probs=89.6

Q ss_pred             CCCCcCcccceeeeCCC---------CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCC-hhhhhCCcccc
Q 035742           30 SSKICPCAWFGISCSDA---------GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTI-PSQIGNLSKLS   99 (214)
Q Consensus        30 ~~~~~~c~w~gv~c~~~---------~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~   99 (214)
                      |-..|.|....+.|...         .+|++|+|++|.+++..| ..|.++++|++|++++|.+.+.+ +..|..+++|+
T Consensus         4 ~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~   82 (455)
T 3v47_A            4 GTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI   82 (455)
T ss_dssp             ---CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECT-TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCC
T ss_pred             ccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCCh-hHhccCccccEEECcCCcccceECcccccccccCC
Confidence            44556666666888742         479999999999997667 88999999999999999997666 45689999999


Q ss_pred             eeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742          100 YISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus       100 ~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~  138 (214)
                      +|++++|++++..|..|+++++|++|++++|++++.+|.
T Consensus        83 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  121 (455)
T 3v47_A           83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS  121 (455)
T ss_dssp             EEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH
T ss_pred             EEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccC
Confidence            999999999988899999999999999999999875543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.42  E-value=3.2e-13  Score=103.66  Aligned_cols=133  Identities=20%  Similarity=0.112  Sum_probs=97.6

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|++++|.+++ ++...|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|
T Consensus        51 l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  129 (208)
T 2o6s_A           51 LTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL  129 (208)
T ss_dssp             CTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence            4578999999999984 442567889999999999999986666667889999999999999986666668888999999


Q ss_pred             hcccccceeecch-hhhhcCCCCchhhhhhcccccch---hhhhhhhcCCCCCCCcch
Q 035742          126 HFQFNQLKLLVLV-LEVIKGKHPRDFLCSILSSSLTK---DVALDEMLDPRLPTSSCS  179 (214)
Q Consensus       126 ~l~~N~l~g~~p~-~~~l~g~~p~~~~~~~~~~~~~~---~~~~~~~l~~~lp~~~~~  179 (214)
                      ++++|++++.++. +..+....-.++..|.+....+.   .....+.+.|.+|.....
T Consensus       130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             ECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHhCCceeeccCcc
Confidence            9999998876664 45555544455555544433332   223357788888887664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.41  E-value=2.9e-13  Score=108.10  Aligned_cols=89  Identities=24%  Similarity=0.179  Sum_probs=60.6

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +++.|++++|.+++..+ ..|..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        38 ~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPS-KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TCSEEECCSSCCSCCCT-TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCEEECcCCCCCeeCH-HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            57778888888774333 56777888888888888777444444567777777777777777444455566666777777


Q ss_pred             ccccceeecc
Q 035742          128 QFNQLKLLVL  137 (214)
Q Consensus       128 ~~N~l~g~~p  137 (214)
                      ++|++++..+
T Consensus       117 ~~n~l~~~~~  126 (270)
T 2o6q_A          117 DRNQLKSLPP  126 (270)
T ss_dssp             CSSCCCCCCT
T ss_pred             CCCccCeeCH
Confidence            6666665544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=8.8e-13  Score=98.85  Aligned_cols=100  Identities=19%  Similarity=0.156  Sum_probs=82.0

Q ss_pred             EEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhccc
Q 035742           50 INISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQF  129 (214)
Q Consensus        50 ~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~  129 (214)
                      +.+++++|.++ .+| ..+.  +.|+.|++++|.+++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            68999999997 888 6554  8999999999999988888999999999999999999965555678999999999999


Q ss_pred             ccceeecch-hhhhcCCCCchhhhh
Q 035742          130 NQLKLLVLV-LEVIKGKHPRDFLCS  153 (214)
Q Consensus       130 N~l~g~~p~-~~~l~g~~p~~~~~~  153 (214)
                      |+|++.++. +..+....-.++..|
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred             CccceeCHHHhccccCCCEEEeCCC
Confidence            999987664 444444433444333

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.39  E-value=5.3e-13  Score=114.05  Aligned_cols=109  Identities=17%  Similarity=0.251  Sum_probs=94.6

Q ss_pred             CCCCCCcCcc--cceeeeCCC----------CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCC
Q 035742           28 NVSSKICPCA--WFGISCSDA----------GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNL   95 (214)
Q Consensus        28 ~~~~~~~~c~--w~gv~c~~~----------~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   95 (214)
                      ..|-..|.|.  |..+.|...          .+++.|+|++|.+++..+ ..|.++++|+.|++++|.+++..|..|..+
T Consensus        44 ~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  122 (452)
T 3zyi_A           44 QNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVGAFNGL  122 (452)
T ss_dssp             CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCCcChhhccCc
Confidence            3466677885  578889742          379999999999997667 889999999999999999998888899999


Q ss_pred             cccceeeccccccccCCCccccccccchhhhcccccceeecc
Q 035742           96 SKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVL  137 (214)
Q Consensus        96 ~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p  137 (214)
                      ++|++|++++|++++..+..|..+++|++|++++|++++..+
T Consensus       123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  164 (452)
T 3zyi_A          123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS  164 (452)
T ss_dssp             TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT
T ss_pred             ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH
Confidence            999999999999996666679999999999999999987655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.39  E-value=6.6e-13  Score=113.95  Aligned_cols=108  Identities=23%  Similarity=0.269  Sum_probs=91.8

Q ss_pred             CCCCcCcc--cceeeeCC----------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcc
Q 035742           30 SSKICPCA--WFGISCSD----------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSK   97 (214)
Q Consensus        30 ~~~~~~c~--w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~   97 (214)
                      |-..|.|.  |..|.|..          ..+++.|+|++|.+++..+ ..|..+++|++|++++|.+++..|..|.++++
T Consensus         3 Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~   81 (477)
T 2id5_A            3 CPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNENIVSAVEPGAFNNLFN   81 (477)
T ss_dssp             CSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             ccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECH-hHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence            55678884  67899974          2378999999999996666 88999999999999999999888889999999


Q ss_pred             cceeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742           98 LSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus        98 L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~  138 (214)
                      |++|++++|++++..+..|.++++|++|++++|++++.+|.
T Consensus        82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~  122 (477)
T 2id5_A           82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY  122 (477)
T ss_dssp             CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT
T ss_pred             CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChh
Confidence            99999999999955555688999999999999999887663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.38  E-value=9.9e-13  Score=102.68  Aligned_cols=90  Identities=28%  Similarity=0.296  Sum_probs=80.5

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|+|++|.|+ .+|...|..+++|+.|++++|.+++..+..+..+++|+.|++++|+|+ .+|..+..+++|++|
T Consensus        63 l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  140 (229)
T 3e6j_A           63 LINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL  140 (229)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred             ccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence            458999999999998 555366899999999999999999766667899999999999999999 899999999999999


Q ss_pred             hcccccceeecc
Q 035742          126 HFQFNQLKLLVL  137 (214)
Q Consensus       126 ~l~~N~l~g~~p  137 (214)
                      ++++|++++..+
T Consensus       141 ~L~~N~l~~~~~  152 (229)
T 3e6j_A          141 ALDQNQLKSIPH  152 (229)
T ss_dssp             ECCSSCCCCCCT
T ss_pred             ECCCCcCCccCH
Confidence            999999997665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=7.9e-13  Score=98.67  Aligned_cols=101  Identities=21%  Similarity=0.140  Sum_probs=83.6

Q ss_pred             eEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcc
Q 035742           49 VINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQ  128 (214)
Q Consensus        49 L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~  128 (214)
                      .+.+++++|.++ .+| ..+  .+.|+.|++++|.|++..|..|..+++|++|++++|+|++..+..|..+++|++|+|+
T Consensus        11 ~~~l~~s~n~l~-~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            468999999999 688 555  3899999999999998888899999999999999999996666678999999999999


Q ss_pred             cccceeecch-hhhhcCCCCchhhhh
Q 035742          129 FNQLKLLVLV-LEVIKGKHPRDFLCS  153 (214)
Q Consensus       129 ~N~l~g~~p~-~~~l~g~~p~~~~~~  153 (214)
                      +|+|++..+. +..+....-.++..|
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCC
Confidence            9999987764 555544444444444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.37  E-value=7.6e-13  Score=105.80  Aligned_cols=133  Identities=18%  Similarity=0.075  Sum_probs=103.5

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..++.+++|++|
T Consensus       108 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  186 (272)
T 3rfs_A          108 LTNLKELVLVENQLQSLPD-GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL  186 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CcCCCEEECCCCcCCccCH-HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence            4579999999999995555 668999999999999999997777678899999999999999997777778899999999


Q ss_pred             hcccccceeecch-hhhhcCCCCchhhhhhcccccch---hhhhhhhcCCCCCCCcch
Q 035742          126 HFQFNQLKLLVLV-LEVIKGKHPRDFLCSILSSSLTK---DVALDEMLDPRLPTSSCS  179 (214)
Q Consensus       126 ~l~~N~l~g~~p~-~~~l~g~~p~~~~~~~~~~~~~~---~~~~~~~l~~~lp~~~~~  179 (214)
                      ++++|++++.+|. +..+....-.++..|.+....+.   .....+.+.|.+|.+...
T Consensus       187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             ECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCCCcccCcccc
Confidence            9999999987775 45555555555555544443332   223357888899988765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.37  E-value=2.5e-13  Score=112.36  Aligned_cols=103  Identities=24%  Similarity=0.250  Sum_probs=82.4

Q ss_pred             CcCcccceeeeCC------------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccce
Q 035742           33 ICPCAWFGISCSD------------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSY  100 (214)
Q Consensus        33 ~~~c~w~gv~c~~------------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  100 (214)
                      .|.|.|.|+ |+.            ..+|++|++++|.+++ ++...|.++++|+.|++++|.+++..|..+..+++|++
T Consensus        27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            358999887 542            2378999999999984 44257899999999999999998777778899999999


Q ss_pred             eeccccccccCCCccccccccchhhhcccccceeecc
Q 035742          101 ISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVL  137 (214)
Q Consensus       101 L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p  137 (214)
                      |++++|++++..+..|+++++|++|++++|++++..+
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~  141 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE  141 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc
Confidence            9999999984433448888999999999998886544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.37  E-value=1.1e-12  Score=103.69  Aligned_cols=91  Identities=23%  Similarity=0.203  Sum_probs=69.5

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|+|++|.+++..+ ..|..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|
T Consensus        58 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  136 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQTLSA-GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL  136 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccCCEEECCCCcCCccCH-hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEE
Confidence            3578888888888886555 667888888888888888886666667788888888888888885555556778888888


Q ss_pred             hcccccceeecc
Q 035742          126 HFQFNQLKLLVL  137 (214)
Q Consensus       126 ~l~~N~l~g~~p  137 (214)
                      ++++|++++.++
T Consensus       137 ~Ls~N~l~~~~~  148 (251)
T 3m19_A          137 RLNTNQLQSIPA  148 (251)
T ss_dssp             ECCSSCCCCCCT
T ss_pred             ECcCCcCCccCH
Confidence            888888877665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.37  E-value=2.7e-13  Score=106.23  Aligned_cols=108  Identities=26%  Similarity=0.307  Sum_probs=86.9

Q ss_pred             CCCCcCccc-ceee--eCC-------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCc-CcCCChhhhhCCccc
Q 035742           30 SSKICPCAW-FGIS--CSD-------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNG-FLGTIPSQIGNLSKL   98 (214)
Q Consensus        30 ~~~~~~c~w-~gv~--c~~-------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L   98 (214)
                      |-..|.|.+ .++.  |..       ..+++.|++++|.+++..+ ..|..+++|+.|++++|. ++...+..|..+++|
T Consensus         4 cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L   82 (239)
T 2xwt_C            4 SSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV   82 (239)
T ss_dssp             CSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECT-TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTC
T ss_pred             CCCCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECH-HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCC
Confidence            456678865 5544  853       3479999999999994444 689999999999999997 875555678999999


Q ss_pred             ceeeccc-cccccCCCccccccccchhhhcccccceeecchh
Q 035742           99 SYISLQS-NQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLVL  139 (214)
Q Consensus        99 ~~L~ls~-N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~~  139 (214)
                      ++|++++ |++++..+..|..+++|++|++++|++++ +|.+
T Consensus        83 ~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~  123 (239)
T 2xwt_C           83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDL  123 (239)
T ss_dssp             CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCC
T ss_pred             cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-cccc
Confidence            9999998 99996666788999999999999999887 4443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.37  E-value=1e-12  Score=98.34  Aligned_cols=93  Identities=18%  Similarity=0.167  Sum_probs=80.8

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        51 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  129 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI  129 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cccccEEECCCCcceEeCh-hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE
Confidence            4589999999999994444 668999999999999999997777678999999999999999995555557889999999


Q ss_pred             hcccccceeecchh
Q 035742          126 HFQFNQLKLLVLVL  139 (214)
Q Consensus       126 ~l~~N~l~g~~p~~  139 (214)
                      ++++|.+++..|.+
T Consensus       130 ~l~~N~~~~~~~~l  143 (177)
T 2o6r_A          130 WLHTNPWDCSCPRI  143 (177)
T ss_dssp             ECCSSCBCCCHHHH
T ss_pred             EecCCCeeccCccH
Confidence            99999999987754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.36  E-value=4.9e-13  Score=97.23  Aligned_cols=85  Identities=21%  Similarity=0.231  Sum_probs=43.0

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccC-CCccccccccchhhh
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK-IPLEVGLLTHLKVLH  126 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~L~  126 (214)
                      +|+.|++++|.+++.   ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|+
T Consensus        43 ~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~  119 (149)
T 2je0_A           43 ELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD  119 (149)
T ss_dssp             TCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred             CCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence            455555555555432   2445555555555555555544554454555555555555555531 224455555555555


Q ss_pred             cccccceee
Q 035742          127 FQFNQLKLL  135 (214)
Q Consensus       127 l~~N~l~g~  135 (214)
                      +++|.+++.
T Consensus       120 l~~N~l~~~  128 (149)
T 2je0_A          120 LFNCEVTNL  128 (149)
T ss_dssp             CTTCGGGGS
T ss_pred             CcCCcccch
Confidence            555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.35  E-value=1.5e-12  Score=104.44  Aligned_cols=89  Identities=24%  Similarity=0.166  Sum_probs=58.3

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccc-cccCCCccccccccchhhh
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQ-LSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~l~~L~~L~  126 (214)
                      +++.|++++|.+++..+ ..|..+++|++|++++|.+++..|..+..+++|++|++++|. +....|..+..+++|++|+
T Consensus        33 ~l~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CceEEEeeCCcCCccCH-HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            56777777777764433 556677777777777777765556666667777777777765 5544456666666666666


Q ss_pred             cccccceeecc
Q 035742          127 FQFNQLKLLVL  137 (214)
Q Consensus       127 l~~N~l~g~~p  137 (214)
                      +++|++++..|
T Consensus       112 l~~n~l~~~~~  122 (285)
T 1ozn_A          112 LDRCGLQELGP  122 (285)
T ss_dssp             CTTSCCCCCCT
T ss_pred             CCCCcCCEECH
Confidence            66666665544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.35  E-value=1.2e-12  Score=107.35  Aligned_cols=105  Identities=22%  Similarity=0.288  Sum_probs=88.2

Q ss_pred             CCCCCcCcccceeeeCC----------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCccc
Q 035742           29 VSSKICPCAWFGISCSD----------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKL   98 (214)
Q Consensus        29 ~~~~~~~c~w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L   98 (214)
                      .|...|.|.|..+.|..          ..+++.|++++|.+++..| ..|..+++|++|++++|.+++..|..+..+++|
T Consensus        26 ~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           26 MCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRK-DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             CCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred             CCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCH-hHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence            35566789999999974          2379999999999996556 789999999999999999998889999999999


Q ss_pred             ceeeccccccccCCCccccccccchhhhcccccceeecc
Q 035742           99 SYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVL  137 (214)
Q Consensus        99 ~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p  137 (214)
                      ++|++++|.++ .+|..+.  ++|++|++++|++++..+
T Consensus       105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~  140 (332)
T 2ft3_A          105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPK  140 (332)
T ss_dssp             CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCS
T ss_pred             CEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCH
Confidence            99999999998 7776554  678888888888776554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.34  E-value=2.1e-12  Score=110.03  Aligned_cols=109  Identities=19%  Similarity=0.251  Sum_probs=93.6

Q ss_pred             CCCCCCcCcc--cceeeeCC----------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCC
Q 035742           28 NVSSKICPCA--WFGISCSD----------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNL   95 (214)
Q Consensus        28 ~~~~~~~~c~--w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l   95 (214)
                      ..|-..|.|.  |..|.|..          ..+++.|+|++|.+++..+ ..|.++++|+.|++++|.+.+..+..|..+
T Consensus        33 ~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l  111 (440)
T 3zyj_A           33 QTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTIEIGAFNGL  111 (440)
T ss_dssp             CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSCCCEECGGGGTTC
T ss_pred             ccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCcCCccChhhccCC
Confidence            3466677885  67899974          2478999999999996666 889999999999999999998778889999


Q ss_pred             cccceeeccccccccCCCccccccccchhhhcccccceeecc
Q 035742           96 SKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVL  137 (214)
Q Consensus        96 ~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p  137 (214)
                      ++|++|++++|+++...+..|..+++|++|++++|++++..+
T Consensus       112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  153 (440)
T 3zyj_A          112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS  153 (440)
T ss_dssp             SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT
T ss_pred             ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH
Confidence            999999999999996556679999999999999999987665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.34  E-value=9.2e-13  Score=116.13  Aligned_cols=105  Identities=17%  Similarity=0.141  Sum_probs=85.9

Q ss_pred             CCCCcCcc--cceeeeCC----------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcc
Q 035742           30 SSKICPCA--WFGISCSD----------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSK   97 (214)
Q Consensus        30 ~~~~~~c~--w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~   97 (214)
                      |...|.|.  +..+.|..          ..+++.|++++|.+++..| ..|.++++|++|++++|.+.+..|..|.++++
T Consensus         4 ~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   82 (606)
T 3t6q_A            4 SDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHR   82 (606)
T ss_dssp             --CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTT
T ss_pred             ccCceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeChhhccCccc
Confidence            33445664  45577763          2478999999999996666 88999999999999999998888888999999


Q ss_pred             cceeeccccccccCCCccccccccchhhhcccccceee
Q 035742           98 LSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLL  135 (214)
Q Consensus        98 L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~  135 (214)
                      |++|++++|++++..|..|+++++|++|++++|++++.
T Consensus        83 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l  120 (606)
T 3t6q_A           83 LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI  120 (606)
T ss_dssp             CCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG
T ss_pred             cCeeeCCCCcccccChhhhcccccccEeeccccCcccC
Confidence            99999999999878888888889999999998888875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.33  E-value=2.1e-12  Score=98.35  Aligned_cols=90  Identities=28%  Similarity=0.227  Sum_probs=80.5

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|+|++|.|++..+ ..|.++++|+.|++++|.+++..|..|..+++|+.|++++|.|+...+..|..+++|+.|
T Consensus        53 l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  131 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL  131 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             ccCCCEEECCCCcCCEeCH-hHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEE
Confidence            4589999999999996555 789999999999999999998888889999999999999999995555578999999999


Q ss_pred             hcccccceeec
Q 035742          126 HFQFNQLKLLV  136 (214)
Q Consensus       126 ~l~~N~l~g~~  136 (214)
                      ++++|.+...-
T Consensus       132 ~L~~N~~~C~c  142 (193)
T 2wfh_A          132 AIGANPLYCDC  142 (193)
T ss_dssp             ECCSSCEECSG
T ss_pred             EeCCCCeecCC
Confidence            99999998643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.33  E-value=1.3e-12  Score=107.32  Aligned_cols=90  Identities=20%  Similarity=0.194  Sum_probs=78.6

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|++++|.++ .+| ..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+.+|..++.+++|++|
T Consensus       182 l~~L~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  258 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR-SLP-ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL  258 (328)
T ss_dssp             STTCCEEEEEEECCC-CCC-GGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred             CCCCCEEECcCCCcC-cch-HhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence            457899999999998 888 78899999999999999998 467788899999999999999888899989999999999


Q ss_pred             hcccccceeecch
Q 035742          126 HFQFNQLKLLVLV  138 (214)
Q Consensus       126 ~l~~N~l~g~~p~  138 (214)
                      ++++|++.+.+|.
T Consensus       259 ~L~~n~~~~~~p~  271 (328)
T 4fcg_A          259 ILKDCSNLLTLPL  271 (328)
T ss_dssp             ECTTCTTCCBCCT
T ss_pred             ECCCCCchhhcch
Confidence            9999988888774

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.32  E-value=6.6e-13  Score=98.48  Aligned_cols=84  Identities=26%  Similarity=0.321  Sum_probs=39.0

Q ss_pred             CeEEEEecCCCCc-cccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           48 RVINISLRNTGLS-GTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        48 ~L~~L~L~~n~l~-g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      +|+.|++++|.++ +.+| ..+..+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus        25 ~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             SCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            3444445444444 3444 3344444444444444444432  3444444444444444444433444444444444444


Q ss_pred             ccccccee
Q 035742          127 FQFNQLKL  134 (214)
Q Consensus       127 l~~N~l~g  134 (214)
                      +++|++++
T Consensus       102 Ls~N~l~~  109 (168)
T 2ell_A          102 LSGNKLKD  109 (168)
T ss_dssp             CBSSSCCS
T ss_pred             ccCCccCc
Confidence            44444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.32  E-value=5.7e-13  Score=120.41  Aligned_cols=101  Identities=24%  Similarity=0.352  Sum_probs=91.0

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|+|++|.|+ .+| ..|..+++|+.|+|++|.|+ .+|..|+.+++|++|+|++|.|+ .+|..|+.+++|++|
T Consensus       246 l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L  321 (727)
T 4b8c_D          246 YDFLTRLYLNGNSLT-ELP-AEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL  321 (727)
T ss_dssp             CCSCSCCBCTTSCCS-CCC-GGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred             CCCCCEEEeeCCcCc-ccC-hhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence            357999999999999 899 89999999999999999999 88999999999999999999998 889999999999999


Q ss_pred             hcccccceeecchh---------------hhhcCCCCchh
Q 035742          126 HFQFNQLKLLVLVL---------------EVIKGKHPRDF  150 (214)
Q Consensus       126 ~l~~N~l~g~~p~~---------------~~l~g~~p~~~  150 (214)
                      +|++|.|++.+|..               +.++|.+|..+
T Consensus       322 ~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l  361 (727)
T 4b8c_D          322 GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER  361 (727)
T ss_dssp             ECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             eCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence            99999999988751               45667777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.32  E-value=1.5e-12  Score=114.67  Aligned_cols=81  Identities=26%  Similarity=0.351  Sum_probs=41.0

Q ss_pred             eEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcc
Q 035742           49 VINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQ  128 (214)
Q Consensus        49 L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~  128 (214)
                      |+.|+|++|.|+ .+| . |..+++|+.|++++|.++ .+|..++.+++|+.|++++|.|++ +| .++.+++|++|+|+
T Consensus       443 L~~L~Ls~n~l~-~lp-~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          443 VRVLHLAHKDLT-VLC-H-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             CSEEECTTSCCS-SCC-C-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             ceEEEecCCCCC-CCc-C-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            445555555554 244 2 555555555555555554 445555555555555555555552 44 45555555555555


Q ss_pred             cccceee
Q 035742          129 FNQLKLL  135 (214)
Q Consensus       129 ~N~l~g~  135 (214)
                      +|+|++.
T Consensus       517 ~N~l~~~  523 (567)
T 1dce_A          517 NNRLQQS  523 (567)
T ss_dssp             SSCCCSS
T ss_pred             CCCCCCC
Confidence            5555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.32  E-value=3.6e-12  Score=104.36  Aligned_cols=106  Identities=24%  Similarity=0.311  Sum_probs=89.3

Q ss_pred             CCCCCcCcccceeeeCC----------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCccc
Q 035742           29 VSSKICPCAWFGISCSD----------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKL   98 (214)
Q Consensus        29 ~~~~~~~c~w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L   98 (214)
                      .|-..|.|.|..+.|..          ..+++.|++++|.+++..+ ..|..+++|++|++++|.+++..|..+..+++|
T Consensus        24 ~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (330)
T 1xku_A           24 VCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKISPGAFAPLVKL  102 (330)
T ss_dssp             CCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeCh-hhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence            35567889999999973          2478999999999995544 689999999999999999998889999999999


Q ss_pred             ceeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742           99 SYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus        99 ~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~  138 (214)
                      ++|++++|.++ .+|..+.  ++|++|++++|++++..+.
T Consensus       103 ~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~  139 (330)
T 1xku_A          103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKS  139 (330)
T ss_dssp             CEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHH
T ss_pred             CEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHh
Confidence            99999999998 6776554  6788888888888776553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.31  E-value=3.2e-12  Score=112.64  Aligned_cols=90  Identities=29%  Similarity=0.209  Sum_probs=74.7

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+++.|++++|.+++..+ ..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            478888999998886555 6888888889999988888877777888888888888888888877788888888888888


Q ss_pred             cccccceeecc
Q 035742          127 FQFNQLKLLVL  137 (214)
Q Consensus       127 l~~N~l~g~~p  137 (214)
                      +++|++++..+
T Consensus       111 L~~n~l~~~~~  121 (606)
T 3vq2_A          111 AVETKLASLES  121 (606)
T ss_dssp             CTTSCCCCSSS
T ss_pred             ccCCccccccc
Confidence            88888876553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.29  E-value=3.4e-12  Score=110.29  Aligned_cols=116  Identities=19%  Similarity=0.137  Sum_probs=85.0

Q ss_pred             CcccceeeeCCCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhh-CCcccceeeccccccccCCC
Q 035742           35 PCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIG-NLSKLSYISLQSNQLSGKIP  113 (214)
Q Consensus        35 ~c~w~gv~c~~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~ls~N~l~g~~p  113 (214)
                      .|.+.++.|....+|+.|+|++|.+++..| ..|..+++|+.|++++|.+++..|..+. .+++|+.|++++|.|++. |
T Consensus       108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~  185 (487)
T 3oja_A          108 NNNISRVSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K  185 (487)
T ss_dssp             SSCCCCEEECCCSSCEEEECCSSCCCSGGG-BCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred             CCcCCCCCccccCCCCEEECCCCCCCCCCc-hhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence            345666667666778899999999887667 7788888999999999999887787776 688888888888888754 3


Q ss_pred             ccccccccchhhhcccccceeecchhhhhcCCCCchhhhh
Q 035742          114 LEVGLLTHLKVLHFQFNQLKLLVLVLEVIKGKHPRDFLCS  153 (214)
Q Consensus       114 ~~~~~l~~L~~L~l~~N~l~g~~p~~~~l~g~~p~~~~~~  153 (214)
                      . +..+++|++|+|++|.+++.+|.+..+....-.++..|
T Consensus       186 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          186 G-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             C-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred             c-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC
Confidence            2 34577788888888888877776555444444444433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.28  E-value=4.6e-12  Score=101.20  Aligned_cols=86  Identities=19%  Similarity=0.197  Sum_probs=41.1

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|+.|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..++.+++|++|++
T Consensus        53 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  131 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (276)
T ss_dssp             TCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             CCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence            44444444444442222 34444445555555555444444444444555555555555554333334555555555555


Q ss_pred             cccccee
Q 035742          128 QFNQLKL  134 (214)
Q Consensus       128 ~~N~l~g  134 (214)
                      ++|++++
T Consensus       132 ~~n~l~~  138 (276)
T 2z62_A          132 AHNLIQS  138 (276)
T ss_dssp             CSSCCCC
T ss_pred             cCCccce
Confidence            5555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.27  E-value=4.5e-12  Score=107.91  Aligned_cols=89  Identities=24%  Similarity=0.237  Sum_probs=57.2

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|+.|++++|.+++..| ..|..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|++|++
T Consensus       276 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             CCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             CceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            56666666666665555 56666666666666666666555656666666666666666666555566666666666666


Q ss_pred             ccccceeecc
Q 035742          128 QFNQLKLLVL  137 (214)
Q Consensus       128 ~~N~l~g~~p  137 (214)
                      ++|++++.+|
T Consensus       355 s~N~l~~~~~  364 (455)
T 3v47_A          355 SYNHIRALGD  364 (455)
T ss_dssp             CSSCCCEECT
T ss_pred             CCCcccccCh
Confidence            6666666544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.27  E-value=5.1e-12  Score=91.77  Aligned_cols=105  Identities=22%  Similarity=0.256  Sum_probs=88.6

Q ss_pred             CCeEEEEecCCCCc-cccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           47 GRVINISLRNTGLS-GTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        47 ~~L~~L~L~~n~l~-g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      .+++.|++++|.++ +.+| ..+..+++|+.|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            47999999999998 7899 8889999999999999999865  788999999999999999997788888889999999


Q ss_pred             hcccccceeec--chhhhhcCCCCchhhhhh
Q 035742          126 HFQFNQLKLLV--LVLEVIKGKHPRDFLCSI  154 (214)
Q Consensus       126 ~l~~N~l~g~~--p~~~~l~g~~p~~~~~~~  154 (214)
                      ++++|++++..  ..+..+....-.++..|.
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            99999999843  445555544444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.27  E-value=5.7e-12  Score=110.88  Aligned_cols=91  Identities=22%  Similarity=0.173  Sum_probs=83.8

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCC-Cccccccccchh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKI-PLEVGLLTHLKV  124 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~-p~~~~~l~~L~~  124 (214)
                      ..+|+.|+|++|.|+ .+| ..|..+++|+.|++++|.+++ +| .++.+++|+.|++++|+|++.. |..++.+++|+.
T Consensus       462 l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~  537 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALP-PALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL  537 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCC-GGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred             cccCcEeecCccccc-ccc-hhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence            357999999999999 899 899999999999999999995 77 8999999999999999999776 999999999999


Q ss_pred             hhcccccceeecchhh
Q 035742          125 LHFQFNQLKLLVLVLE  140 (214)
Q Consensus       125 L~l~~N~l~g~~p~~~  140 (214)
                      |+|++|++++.+|...
T Consensus       538 L~L~~N~l~~~~~~~~  553 (567)
T 1dce_A          538 LNLQGNSLCQEEGIQE  553 (567)
T ss_dssp             EECTTSGGGGSSSCTT
T ss_pred             EEecCCcCCCCccHHH
Confidence            9999999998877543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.27  E-value=2.5e-12  Score=106.41  Aligned_cols=108  Identities=24%  Similarity=0.271  Sum_probs=89.1

Q ss_pred             CCCCC-cCcccceeeeCC----------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChh-hhhCCc
Q 035742           29 VSSKI-CPCAWFGISCSD----------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPS-QIGNLS   96 (214)
Q Consensus        29 ~~~~~-~~c~w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~   96 (214)
                      +|-.. |.|.+..|.|+.          ..++++|+|++|.|+ .+|...|.++++|++|+|++|.+.+.+|. .|.+++
T Consensus         1 gCp~~~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~   79 (350)
T 4ay9_X            1 GCHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP   79 (350)
T ss_dssp             -CCCSSSEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT
T ss_pred             CCCCCccEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch
Confidence            35444 899999999974          247899999999999 67746799999999999999999777765 478888


Q ss_pred             ccce-eeccccccccCCCccccccccchhhhcccccceeecc
Q 035742           97 KLSY-ISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVL  137 (214)
Q Consensus        97 ~L~~-L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p  137 (214)
                      +++. +.+..|+++...|..|..+++|++|++++|++++..+
T Consensus        80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             hhhhhhcccCCcccccCchhhhhccccccccccccccccCCc
Confidence            8775 5667899997778889999999999999999886654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.27  E-value=7.5e-12  Score=95.30  Aligned_cols=84  Identities=23%  Similarity=0.318  Sum_probs=42.1

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccc-cccCCCccccccccchhhh
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQ-LSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~l~~L~~L~  126 (214)
                      +|+.|++++|.+++..+ ..+..+++|++|++++|.+++..|..+..+++|+.|++++|. ++ .+| .+..+++|++|+
T Consensus        89 ~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~  165 (197)
T 4ezg_A           89 NLERLRIMGKDVTSDKI-PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLN  165 (197)
T ss_dssp             TCCEEEEECTTCBGGGS-CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEE
T ss_pred             CCCEEEeECCccCcccC-hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEE
Confidence            45555555555554344 445555555555555555554444455555555555555554 32 333 344555555555


Q ss_pred             ccccccee
Q 035742          127 FQFNQLKL  134 (214)
Q Consensus       127 l~~N~l~g  134 (214)
                      +++|++++
T Consensus       166 l~~n~i~~  173 (197)
T 4ezg_A          166 IQFDGVHD  173 (197)
T ss_dssp             CTTBCCCC
T ss_pred             CCCCCCcC
Confidence            55555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.26  E-value=4.2e-12  Score=105.57  Aligned_cols=93  Identities=20%  Similarity=0.142  Sum_probs=79.0

Q ss_pred             CCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742           45 DAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV  124 (214)
Q Consensus        45 ~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~  124 (214)
                      ...+|+.|+|++|.|++..+ ..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|+|++..|..|..+++|+.
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  140 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK  140 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence            34579999999999985555 77999999999999999998666667889999999999999999777888999999999


Q ss_pred             hhcccccceeecch
Q 035742          125 LHFQFNQLKLLVLV  138 (214)
Q Consensus       125 L~l~~N~l~g~~p~  138 (214)
                      |+|++|++++..+.
T Consensus       141 L~L~~N~l~~l~~~  154 (361)
T 2xot_A          141 LYLSQNQISRFPVE  154 (361)
T ss_dssp             EECCSSCCCSCCGG
T ss_pred             EECCCCcCCeeCHH
Confidence            99999999875543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.26  E-value=6.2e-12  Score=112.32  Aligned_cols=103  Identities=23%  Similarity=0.324  Sum_probs=68.6

Q ss_pred             cCcccceeeeCC----------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeec
Q 035742           34 CPCAWFGISCSD----------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISL  103 (214)
Q Consensus        34 ~~c~w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l  103 (214)
                      |.|.+..+.|+.          ..+++.|++++|.+++..+ ..|.++++|++|++++|.+++..|..++++++|++|++
T Consensus         2 C~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L   80 (680)
T 1ziw_A            2 CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL   80 (680)
T ss_dssp             --CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEEC
T ss_pred             ceeECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCH-HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEEC
Confidence            455555556652          2367778888887774433 56777777777777777777766777777777777777


Q ss_pred             cccccccCCCccccccccchhhhcccccceeecc
Q 035742          104 QSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVL  137 (214)
Q Consensus       104 s~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p  137 (214)
                      ++|.+++..+..|+++++|++|++++|++++..|
T Consensus        81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~  114 (680)
T 1ziw_A           81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN  114 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS
T ss_pred             CCCccCccChhhhccCCCCCEEECCCCccCccCh
Confidence            7777773333357777777777777777766554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.26  E-value=7.2e-12  Score=92.80  Aligned_cols=87  Identities=26%  Similarity=0.304  Sum_probs=77.9

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCC--ccccccccchh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIP--LEVGLLTHLKV  124 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~~L~~  124 (214)
                      .+|+.|++++|.+++.   ..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+++ +|  ..+..+++|++
T Consensus        49 ~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~  124 (168)
T 2ell_A           49 VNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKS  124 (168)
T ss_dssp             GGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCE
T ss_pred             CCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCE
Confidence            5799999999999854   478999999999999999998788888889999999999999984 44  78899999999


Q ss_pred             hhcccccceeecc
Q 035742          125 LHFQFNQLKLLVL  137 (214)
Q Consensus       125 L~l~~N~l~g~~p  137 (214)
                      |++++|.+++..+
T Consensus       125 L~l~~N~l~~~~~  137 (168)
T 2ell_A          125 LDLFNCEVTNLND  137 (168)
T ss_dssp             EECCSSGGGTSTT
T ss_pred             EEeeCCcCcchHH
Confidence            9999999987665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.24  E-value=1.1e-11  Score=100.05  Aligned_cols=89  Identities=22%  Similarity=0.239  Sum_probs=58.2

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|++++|.++ .+| ..+..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|+
T Consensus        77 ~~L~~L~Ls~N~l~-~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (290)
T ss_dssp             TTCCEEECCSSCCS-SCC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CcCCEEECCCCcCC-cCc-hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence            35666666666666 566 5666677777777777777655555666677777777777777644445566666777777


Q ss_pred             cccccceeecc
Q 035742          127 FQFNQLKLLVL  137 (214)
Q Consensus       127 l~~N~l~g~~p  137 (214)
                      +++|++++.++
T Consensus       155 L~~N~l~~l~~  165 (290)
T 1p9a_G          155 LANNNLTELPA  165 (290)
T ss_dssp             CTTSCCSCCCT
T ss_pred             CCCCcCCccCH
Confidence            77777665444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.24  E-value=4.9e-12  Score=103.05  Aligned_cols=89  Identities=17%  Similarity=0.140  Sum_probs=77.5

Q ss_pred             CCCeEEEEecCCCCccccCcccc--CCCCCCcEEeCcCCcCcCCChhhhhCC-----cccceeeccccccccCCCccccc
Q 035742           46 AGRVINISLRNTGLSGTLSDFSF--SSFPQLVHLDLSLNGFLGTIPSQIGNL-----SKLSYISLQSNQLSGKIPLEVGL  118 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~--~~l~~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~ls~N~l~g~~p~~~~~  118 (214)
                      ..+|++|++++|.+++.+| ..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|++++..|..|++
T Consensus        94 l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAP-PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCC-CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             cCCccEEEccCCcccchhH-HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            4578999999999998888 665  8899999999999999876 8778777     89999999999999777788999


Q ss_pred             cccchhhhcccccceeec
Q 035742          119 LTHLKVLHFQFNQLKLLV  136 (214)
Q Consensus       119 l~~L~~L~l~~N~l~g~~  136 (214)
                      +++|++|++++|++.+.+
T Consensus       172 l~~L~~L~Ls~N~l~~~~  189 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGER  189 (312)
T ss_dssp             CSSCCEEECCSCTTCHHH
T ss_pred             CCCCCEEECCCCCcCcch
Confidence            999999999999987753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.23  E-value=1.3e-11  Score=108.68  Aligned_cols=89  Identities=18%  Similarity=0.183  Sum_probs=78.1

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|+|++|.|++..+ ..|.++++|++|+|++|++++..+..|.++++|++|++++|++++..+..|+++++|++|
T Consensus        75 l~~L~~L~Ls~N~i~~i~~-~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L  153 (635)
T 4g8a_A           75 FPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL  153 (635)
T ss_dssp             CTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCCcCh-hHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCee
Confidence            3489999999999995444 789999999999999999996666779999999999999999996666779999999999


Q ss_pred             hcccccceee
Q 035742          126 HFQFNQLKLL  135 (214)
Q Consensus       126 ~l~~N~l~g~  135 (214)
                      ++++|.+++.
T Consensus       154 ~Ls~N~l~~~  163 (635)
T 4g8a_A          154 NVAHNLIQSF  163 (635)
T ss_dssp             ECCSSCCCCC
T ss_pred             ccccCccccC
Confidence            9999999763

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.23  E-value=5.3e-12  Score=115.79  Aligned_cols=96  Identities=22%  Similarity=0.102  Sum_probs=52.5

Q ss_pred             cceeeeCCCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCC-hhhhhCCcccceeeccccccccCCCccc
Q 035742           38 WFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTI-PSQIGNLSKLSYISLQSNQLSGKIPLEV  116 (214)
Q Consensus        38 w~gv~c~~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~ls~N~l~g~~p~~~  116 (214)
                      |+.|.+ -..+++.|+|++|.+++..| ..|.++++|++|++++|.+.+.+ |..|.++++|++|++++|.+++..|..|
T Consensus        16 L~~vP~-lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~   93 (844)
T 3j0a_A           16 LTQVPQ-VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF   93 (844)
T ss_dssp             SSCCCS-SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred             CCCCCC-CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence            444444 33556666666666664444 55555555555555555443343 4445555555555555555555555555


Q ss_pred             cccccchhhhcccccceee
Q 035742          117 GLLTHLKVLHFQFNQLKLL  135 (214)
Q Consensus       117 ~~l~~L~~L~l~~N~l~g~  135 (214)
                      +++++|++|+|++|.+++.
T Consensus        94 ~~l~~L~~L~Ls~n~l~~~  112 (844)
T 3j0a_A           94 QGLFHLFELRLYFCGLSDA  112 (844)
T ss_dssp             CSCSSCCCEECTTCCCSSC
T ss_pred             cCCcccCEeeCcCCCCCcc
Confidence            5555555555555555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.22  E-value=2.4e-12  Score=114.63  Aligned_cols=86  Identities=15%  Similarity=0.315  Sum_probs=45.5

Q ss_pred             CCeEEEEecCCCCccc-----------------cCccccC--CCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccc
Q 035742           47 GRVINISLRNTGLSGT-----------------LSDFSFS--SFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQ  107 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~-----------------~p~~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~  107 (214)
                      .+|++|+|++|.++|.                 +| ..+.  ++++|++|++++|.+.+.+|..++++++|++|++++|+
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            3555555555555543                 55 5555  55555555555555555555555555555555555555


Q ss_pred             -ccc-CCCcccccc------ccchhhhcccccce
Q 035742          108 -LSG-KIPLEVGLL------THLKVLHFQFNQLK  133 (214)
Q Consensus       108 -l~g-~~p~~~~~l------~~L~~L~l~~N~l~  133 (214)
                       ++| .+|..++.+      ++|++|++++|+++
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence             554 444444433      44444444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.22  E-value=2.1e-11  Score=97.18  Aligned_cols=92  Identities=26%  Similarity=0.230  Sum_probs=72.1

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+.|
T Consensus        84 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence            3578888888888884434 667888888888888888887767778888888888888888885555557888888888


Q ss_pred             hcccccceeecch
Q 035742          126 HFQFNQLKLLVLV  138 (214)
Q Consensus       126 ~l~~N~l~g~~p~  138 (214)
                      ++++|++++..+.
T Consensus       163 ~L~~n~l~~~~~~  175 (270)
T 2o6q_A          163 RLYNNQLKRVPEG  175 (270)
T ss_dssp             ECCSSCCSCCCTT
T ss_pred             EecCCcCcEeChh
Confidence            8888888876553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.22  E-value=2.8e-11  Score=97.07  Aligned_cols=89  Identities=21%  Similarity=0.229  Sum_probs=45.0

Q ss_pred             CeEEEEecCCC-CccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           48 RVINISLRNTG-LSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        48 ~L~~L~L~~n~-l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      +|+.|++++|. ++...| ..|..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..|+.+++|++|+
T Consensus        81 ~L~~L~l~~n~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           81 LLEQLDLSDNAQLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (285)
T ss_dssp             TCCEEECCSCTTCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEeCCCCCCccccCH-HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence            45555555554 432223 4455555555555555555544444455555555555555555533333455555555555


Q ss_pred             cccccceeecc
Q 035742          127 FQFNQLKLLVL  137 (214)
Q Consensus       127 l~~N~l~g~~p  137 (214)
                      +++|++++..+
T Consensus       160 l~~n~l~~~~~  170 (285)
T 1ozn_A          160 LHGNRISSVPE  170 (285)
T ss_dssp             CCSSCCCEECT
T ss_pred             CCCCcccccCH
Confidence            55555554433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.21  E-value=2e-11  Score=98.61  Aligned_cols=92  Identities=20%  Similarity=0.105  Sum_probs=78.8

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|++++|.+++..+ ..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|
T Consensus        99 l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  177 (290)
T 1p9a_G           99 LPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL  177 (290)
T ss_dssp             CTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEE
Confidence            4579999999999995555 779999999999999999997766678899999999999999995545567889999999


Q ss_pred             hcccccceeecch
Q 035742          126 HFQFNQLKLLVLV  138 (214)
Q Consensus       126 ~l~~N~l~g~~p~  138 (214)
                      ++++|+++..++.
T Consensus       178 ~L~~N~l~~ip~~  190 (290)
T 1p9a_G          178 LLQENSLYTIPKG  190 (290)
T ss_dssp             ECCSSCCCCCCTT
T ss_pred             ECCCCcCCccChh
Confidence            9999999865444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.21  E-value=9.7e-12  Score=100.69  Aligned_cols=85  Identities=22%  Similarity=0.337  Sum_probs=34.1

Q ss_pred             eEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcC-CChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           49 VINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLG-TIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        49 L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      |+.|++++|.+++..+ ..|..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+++..|..+..+++|++|++
T Consensus       128 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  206 (306)
T 2z66_A          128 LIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  206 (306)
T ss_dssp             CCEEECTTSCCEECST-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCcCCccch-hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence            3334444443333333 333344444444444444432 23333444444444444444444333334444444444444


Q ss_pred             cccccee
Q 035742          128 QFNQLKL  134 (214)
Q Consensus       128 ~~N~l~g  134 (214)
                      ++|++++
T Consensus       207 ~~N~l~~  213 (306)
T 2z66_A          207 SHNNFFS  213 (306)
T ss_dssp             TTSCCSB
T ss_pred             CCCccCc
Confidence            4444433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=1.2e-11  Score=101.83  Aligned_cols=85  Identities=16%  Similarity=0.199  Sum_probs=77.7

Q ss_pred             EEEecCC-CCccccCccccCCCCCCcEEeCcC-CcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcc
Q 035742           51 NISLRNT-GLSGTLSDFSFSSFPQLVHLDLSL-NGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQ  128 (214)
Q Consensus        51 ~L~L~~n-~l~g~~p~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~  128 (214)
                      .++.+++ +|+ .+| . +..+++|+.|+|++ |.|++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus        12 ~v~~~~~n~l~-~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            5688988 898 799 7 99999999999996 99997777889999999999999999998888899999999999999


Q ss_pred             cccceeecch
Q 035742          129 FNQLKLLVLV  138 (214)
Q Consensus       129 ~N~l~g~~p~  138 (214)
                      +|+|++.++.
T Consensus        89 ~N~l~~~~~~   98 (347)
T 2ifg_A           89 FNALESLSWK   98 (347)
T ss_dssp             SSCCSCCCST
T ss_pred             CCccceeCHH
Confidence            9999987654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.20  E-value=8.6e-12  Score=94.95  Aligned_cols=93  Identities=11%  Similarity=0.224  Sum_probs=56.2

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|+.|++++|.++ . + +.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++
T Consensus        67 ~L~~L~l~~n~~~-~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           67 NIKDLTINNIHAT-N-Y-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             TCSEEEEESCCCS-C-C-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCCEEEccCCCCC-c-c-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence            5666666666544 2 2 35666666666666666666555666666666666666666666555666666666666666


Q ss_pred             ccccceeecchhhhhc
Q 035742          128 QFNQLKLLVLVLEVIK  143 (214)
Q Consensus       128 ~~N~l~g~~p~~~~l~  143 (214)
                      ++|.+.+.+|.+..+.
T Consensus       144 ~~n~~i~~~~~l~~l~  159 (197)
T 4ezg_A          144 SYNGAITDIMPLKTLP  159 (197)
T ss_dssp             CSCTBCCCCGGGGGCS
T ss_pred             cCCCCccccHhhcCCC
Confidence            6666333344444333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.20  E-value=9.4e-12  Score=109.95  Aligned_cols=89  Identities=18%  Similarity=0.170  Sum_probs=51.0

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|+.|+|++|.+++..| ..|..+++|+.|++++|.+++..|..|+.+++|++|++++|.+++..+..|+++++|++|++
T Consensus        76 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEECCCCCCCCCCh-HHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            45555666666554433 45666666666666666666555555566666666666666666333333456666666666


Q ss_pred             ccccceeecc
Q 035742          128 QFNQLKLLVL  137 (214)
Q Consensus       128 ~~N~l~g~~p  137 (214)
                      ++|.+++.+|
T Consensus       155 s~N~l~~~~~  164 (597)
T 3oja_B          155 SNNNLERIED  164 (597)
T ss_dssp             CSSCCCBCCT
T ss_pred             eCCcCCCCCh
Confidence            6666665554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.19  E-value=3.3e-11  Score=96.21  Aligned_cols=91  Identities=18%  Similarity=0.201  Sum_probs=65.7

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccC-CCccccccccchh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGK-IPLEVGLLTHLKV  124 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~  124 (214)
                      ..+|+.|++++|.+++..+ ..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++
T Consensus        75 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~  153 (276)
T 2z62_A           75 LSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (276)
T ss_dssp             CTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CcCCCEEECCCCccCccCh-hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence            3467777777777775555 6677777777777777777755555677777777777777777642 5777777777777


Q ss_pred             hhcccccceeecc
Q 035742          125 LHFQFNQLKLLVL  137 (214)
Q Consensus       125 L~l~~N~l~g~~p  137 (214)
                      |++++|++++..+
T Consensus       154 L~Ls~N~l~~~~~  166 (276)
T 2z62_A          154 LDLSSNKIQSIYC  166 (276)
T ss_dssp             EECCSSCCCEECG
T ss_pred             EECCCCCCCcCCH
Confidence            7777777776654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.17  E-value=3.2e-11  Score=106.25  Aligned_cols=87  Identities=17%  Similarity=0.216  Sum_probs=58.5

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|++++|.+++..| ..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|+
T Consensus        56 ~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  134 (606)
T 3vq2_A           56 SELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN  134 (606)
T ss_dssp             TTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred             ccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence            467777777777765445 5667777777777777777666666677777777777777776655545666666666666


Q ss_pred             ccccccee
Q 035742          127 FQFNQLKL  134 (214)
Q Consensus       127 l~~N~l~g  134 (214)
                      +++|.+++
T Consensus       135 L~~n~l~~  142 (606)
T 3vq2_A          135 VAHNFIHS  142 (606)
T ss_dssp             CCSSCCCC
T ss_pred             CCCCcccc
Confidence            66666654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.17  E-value=3.3e-11  Score=106.43  Aligned_cols=91  Identities=16%  Similarity=0.098  Sum_probs=78.3

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+++.+++++|.+. .+|...|..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..|+++++|++|+
T Consensus        51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            46788999999988 56635678899999999999999977777899999999999999999977777889999999999


Q ss_pred             cccccceeecch
Q 035742          127 FQFNQLKLLVLV  138 (214)
Q Consensus       127 l~~N~l~g~~p~  138 (214)
                      |++|.+++.++.
T Consensus       130 L~~n~l~~l~~~  141 (597)
T 3oja_B          130 LERNDLSSLPRG  141 (597)
T ss_dssp             CCSSCCCCCCTT
T ss_pred             eeCCCCCCCCHH
Confidence            999999876654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.16  E-value=1.8e-11  Score=102.43  Aligned_cols=86  Identities=16%  Similarity=0.115  Sum_probs=46.0

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +++.|++++|.++ .+|...|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..|+++++|++|++
T Consensus        46 ~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           46 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            4555556555555 344233455555555555555555444445555555555555555555444444555555555555


Q ss_pred             cccccee
Q 035742          128 QFNQLKL  134 (214)
Q Consensus       128 ~~N~l~g  134 (214)
                      ++|+++.
T Consensus       125 ~~n~l~~  131 (390)
T 3o6n_A          125 ERNDLSS  131 (390)
T ss_dssp             CSSCCCC
T ss_pred             CCCccCc
Confidence            5555553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.16  E-value=2.5e-11  Score=90.70  Aligned_cols=83  Identities=18%  Similarity=0.135  Sum_probs=53.4

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCc--cccccccchhh
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPL--EVGLLTHLKVL  125 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~--~~~~l~~L~~L  125 (214)
                      +|+.|++++|.+++ +  ..|..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|.  .+..+++|+.|
T Consensus        43 ~L~~L~Ls~N~l~~-~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           43 QFDAIDFSDNEIRK-L--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             CCSEEECCSSCCCE-E--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred             CCCEEECCCCCCCc-c--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence            56777777777663 2  35666777777777777776433333466777777777777775 5554  56666677777


Q ss_pred             hccccccee
Q 035742          126 HFQFNQLKL  134 (214)
Q Consensus       126 ~l~~N~l~g  134 (214)
                      ++++|.++.
T Consensus       119 ~l~~N~i~~  127 (176)
T 1a9n_A          119 CILRNPVTN  127 (176)
T ss_dssp             ECCSSGGGG
T ss_pred             EecCCCCCC
Confidence            777776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.15  E-value=9.7e-12  Score=114.20  Aligned_cols=91  Identities=14%  Similarity=0.236  Sum_probs=69.0

Q ss_pred             CCCeEEEEecCCCCcc-----------------ccCccccC--CCCCCcEEeCcCCcCcCCChhhhhCCcccceeecccc
Q 035742           46 AGRVINISLRNTGLSG-----------------TLSDFSFS--SFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSN  106 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g-----------------~~p~~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N  106 (214)
                      ..+|+.|+|++|.++|                 .+| ..++  ++++|+.|++++|.+.+.+|..++++++|+.|++++|
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCC-hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            4578888888888886                 377 6766  8888888888888888888888888888888888888


Q ss_pred             c-ccc-CCCccccccc-------cchhhhcccccceeecch
Q 035742          107 Q-LSG-KIPLEVGLLT-------HLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus       107 ~-l~g-~~p~~~~~l~-------~L~~L~l~~N~l~g~~p~  138 (214)
                      + ++| .+|..++.++       +|++|++++|+++ .+|.
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~  565 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA  565 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence            7 777 6777666665       7777777777777 4443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.14  E-value=2.6e-11  Score=105.90  Aligned_cols=92  Identities=20%  Similarity=0.208  Sum_probs=69.1

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccc-cCCCccccccccchh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS-GKIPLEVGLLTHLKV  124 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~-g~~p~~~~~l~~L~~  124 (214)
                      ..+|+.|++++|.+.+..+...+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++ +.+|..+..+++|++
T Consensus       395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~  474 (570)
T 2z63_A          395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  474 (570)
T ss_dssp             CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence            3467888888888775544245777788888888888887777777777888888888888776 567777777888888


Q ss_pred             hhcccccceeecc
Q 035742          125 LHFQFNQLKLLVL  137 (214)
Q Consensus       125 L~l~~N~l~g~~p  137 (214)
                      |++++|++++.+|
T Consensus       475 L~l~~n~l~~~~~  487 (570)
T 2z63_A          475 LDLSQCQLEQLSP  487 (570)
T ss_dssp             EECTTSCCCEECT
T ss_pred             EECCCCccccCCh
Confidence            8888888777755

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.14  E-value=3.4e-11  Score=104.84  Aligned_cols=91  Identities=24%  Similarity=0.235  Sum_probs=78.7

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeecccccccc-CCCccccccccchh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG-KIPLEVGLLTHLKV  124 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~  124 (214)
                      ..+|++|++++|.+++..| ..|..+++|++|++++|.+++..|..++.+++|++|++++|.+++ ..|..++++++|++
T Consensus        49 l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  127 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT  127 (549)
T ss_dssp             CTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred             CCcccEEECCCCCcCccCh-hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence            4589999999999997666 789999999999999999998777779999999999999999986 35778899999999


Q ss_pred             hhcccccceeecc
Q 035742          125 LHFQFNQLKLLVL  137 (214)
Q Consensus       125 L~l~~N~l~g~~p  137 (214)
                      |++++|++.+.+|
T Consensus       128 L~L~~n~~~~~~~  140 (549)
T 2z81_A          128 LRIGNVETFSEIR  140 (549)
T ss_dssp             EEEEESSSCCEEC
T ss_pred             EECCCCccccccC
Confidence            9999998655555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.14  E-value=3.4e-11  Score=106.09  Aligned_cols=94  Identities=13%  Similarity=0.010  Sum_probs=78.8

Q ss_pred             CCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742           45 DAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV  124 (214)
Q Consensus        45 ~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~  124 (214)
                      ...+|++|+|++|.+++..| ..|.++++|++|++++|.+.+..|..++.+++|++|++++|.+++..|..++++++|++
T Consensus        55 ~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~  133 (606)
T 3t6q_A           55 RLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES  133 (606)
T ss_dssp             TCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred             cCccceEEECCCCccceeCh-hhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence            34578999999999987667 88999999999999999998788888999999999999999998666777888889999


Q ss_pred             hhccccccee-ecchh
Q 035742          125 LHFQFNQLKL-LVLVL  139 (214)
Q Consensus       125 L~l~~N~l~g-~~p~~  139 (214)
                      |++++|++++ .+|.+
T Consensus       134 L~L~~n~l~~~~~~~~  149 (606)
T 3t6q_A          134 LYLGSNHISSIKLPKG  149 (606)
T ss_dssp             EECCSSCCCCCCCCTT
T ss_pred             EECCCCcccccCcccc
Confidence            9999998887 33543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.13  E-value=4.9e-11  Score=89.13  Aligned_cols=103  Identities=19%  Similarity=0.078  Sum_probs=78.4

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCC-CCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFP-QLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV  124 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~  124 (214)
                      ..+|+.|++++|.++ .+| . +..+. +|+.|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        18 ~~~L~~L~l~~n~l~-~i~-~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           18 AVRDRELDLRGYKIP-VIE-N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             TTSCEEEECTTSCCC-SCC-C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCceEEEeeCCCCc-hhH-H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            357999999999999 566 4 55544 999999999999854  68899999999999999999544444599999999


Q ss_pred             hhcccccceeecc--hhhhhcCCCCchhhhh
Q 035742          125 LHFQFNQLKLLVL--VLEVIKGKHPRDFLCS  153 (214)
Q Consensus       125 L~l~~N~l~g~~p--~~~~l~g~~p~~~~~~  153 (214)
                      |++++|+++...+  .+..+....-.++..|
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N  123 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRN  123 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCC
Confidence            9999999965333  3444433333344443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.13  E-value=5.8e-11  Score=97.14  Aligned_cols=89  Identities=18%  Similarity=0.248  Sum_probs=64.8

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|+
T Consensus       192 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~  269 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY  269 (330)
T ss_dssp             TTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEE
T ss_pred             ccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEE
Confidence            457777777777775555 67777777777777777777666666777777777777777777 7777777777777777


Q ss_pred             cccccceeecc
Q 035742          127 FQFNQLKLLVL  137 (214)
Q Consensus       127 l~~N~l~g~~p  137 (214)
                      +++|++++..+
T Consensus       270 l~~N~i~~~~~  280 (330)
T 1xku_A          270 LHNNNISAIGS  280 (330)
T ss_dssp             CCSSCCCCCCT
T ss_pred             CCCCcCCccCh
Confidence            77777775443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.12  E-value=7.6e-11  Score=98.62  Aligned_cols=90  Identities=19%  Similarity=0.227  Sum_probs=70.5

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCcc-ccccccchhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLE-VGLLTHLKVL  125 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~~L  125 (214)
                      .+|+.|++++|.+++..+ ..|..+++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|.. |.++++|++|
T Consensus        69 ~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             CCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             ccCcEEECCCCcccccCh-hhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence            478888888888885444 67888888888888888888777777888888888888888888 45544 5788888888


Q ss_pred             hcccccceeecch
Q 035742          126 HFQFNQLKLLVLV  138 (214)
Q Consensus       126 ~l~~N~l~g~~p~  138 (214)
                      ++++|++++..|.
T Consensus       147 ~L~~n~l~~~~~~  159 (390)
T 3o6n_A          147 SMSNNNLERIEDD  159 (390)
T ss_dssp             ECCSSCCCBCCTT
T ss_pred             ECCCCccCccChh
Confidence            8888888776553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.12  E-value=5.6e-11  Score=104.09  Aligned_cols=85  Identities=24%  Similarity=0.244  Sum_probs=74.2

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+++.|++++|.+++..+ ..|.++++|++|++++|.+++..|..|..+++|++|++++|+++ .+|..  .+++|++|+
T Consensus        52 ~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNSISELRM-PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSCCCCCCG-GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCCccccCh-hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            578999999999996555 78999999999999999999877888999999999999999998 67766  788899999


Q ss_pred             cccccceee
Q 035742          127 FQFNQLKLL  135 (214)
Q Consensus       127 l~~N~l~g~  135 (214)
                      +++|++++.
T Consensus       128 Ls~N~l~~l  136 (562)
T 3a79_B          128 LSFNDFDVL  136 (562)
T ss_dssp             CCSSCCSBC
T ss_pred             CCCCCcccc
Confidence            999988873

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.12  E-value=6.9e-11  Score=102.32  Aligned_cols=92  Identities=16%  Similarity=0.178  Sum_probs=78.6

Q ss_pred             CCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcC--CChhhhhCCcccceeeccccccccCCCcc-cccccc
Q 035742           45 DAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLG--TIPSQIGNLSKLSYISLQSNQLSGKIPLE-VGLLTH  121 (214)
Q Consensus        45 ~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~  121 (214)
                      ...+|+.|++++|.+++.+| ..+..+++|+.|++++|.+++  .+|..+..+++|++|++++|.+++.+|.. +..+++
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hCCcccEEEeECCccChhhh-hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            44679999999999998788 889999999999999999986  56678999999999999999999757764 777888


Q ss_pred             chhhhcccccceeecc
Q 035742          122 LKVLHFQFNQLKLLVL  137 (214)
Q Consensus       122 L~~L~l~~N~l~g~~p  137 (214)
                      |++|++++|++++.+|
T Consensus       401 L~~L~Ls~N~l~~~~~  416 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIF  416 (520)
T ss_dssp             CCEEECCSSCCCGGGG
T ss_pred             CCEEECcCCCCCcchh
Confidence            8888888888876655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.12  E-value=6.3e-11  Score=101.60  Aligned_cols=91  Identities=19%  Similarity=0.127  Sum_probs=66.7

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|++|+|++|.+++..| ..|.++++|++|++++|.++...+..|..+++|++|++++|++.+..|..|..+++|++|
T Consensus        55 l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             CTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            3467788888888776556 777778888888888887775444456777778888887777776667777777777777


Q ss_pred             hcccccceeecc
Q 035742          126 HFQFNQLKLLVL  137 (214)
Q Consensus       126 ~l~~N~l~g~~p  137 (214)
                      ++++|.+++..+
T Consensus       134 ~l~~n~l~~~~~  145 (477)
T 2id5_A          134 EVGDNDLVYISH  145 (477)
T ss_dssp             EECCTTCCEECT
T ss_pred             ECCCCccceeCh
Confidence            777777776554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.11  E-value=6.3e-11  Score=108.67  Aligned_cols=92  Identities=23%  Similarity=0.202  Sum_probs=63.3

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCcc--ccccccch
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLE--VGLLTHLK  123 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~--~~~l~~L~  123 (214)
                      ..+|+.|+|++|.+.+.++...|.++++|++|++++|.+.+..|..|..+++|++|++++|.+++.+|..  |+++++|+
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            3467777777776555663266777777777777777777666777777777777777777777655554  67777777


Q ss_pred             hhhcccccceeecc
Q 035742          124 VLHFQFNQLKLLVL  137 (214)
Q Consensus       124 ~L~l~~N~l~g~~p  137 (214)
                      +|++++|.+++..+
T Consensus       127 ~L~Ls~N~l~~~~~  140 (844)
T 3j0a_A          127 RLDLSKNQIRSLYL  140 (844)
T ss_dssp             EEEEESCCCCCCCC
T ss_pred             EEECCCCccccccc
Confidence            77777777766543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.10  E-value=6.2e-11  Score=103.45  Aligned_cols=92  Identities=24%  Similarity=0.310  Sum_probs=80.0

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCc-CCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFL-GTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV  124 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~  124 (214)
                      ..+|+.|++++|.+.+..| ..|..+++|+.|++++|.+. +.+|..+..+++|+.|++++|++++..|..|..+++|++
T Consensus       420 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  498 (570)
T 2z63_A          420 LRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  498 (570)
T ss_dssp             CTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCEEeCcCCcccccch-hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence            4578999999999987777 88889999999999999987 578888899999999999999999878888999999999


Q ss_pred             hhcccccceeecch
Q 035742          125 LHFQFNQLKLLVLV  138 (214)
Q Consensus       125 L~l~~N~l~g~~p~  138 (214)
                      |++++|++++.+|.
T Consensus       499 L~l~~n~l~~~~~~  512 (570)
T 2z63_A          499 LNMASNQLKSVPDG  512 (570)
T ss_dssp             EECCSSCCSCCCTT
T ss_pred             EeCCCCcCCCCCHH
Confidence            99999998887653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.10  E-value=1.2e-10  Score=95.04  Aligned_cols=113  Identities=19%  Similarity=0.150  Sum_probs=72.0

Q ss_pred             cceeeeCCCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhh-CCcccceeeccccccccCCCccc
Q 035742           38 WFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIG-NLSKLSYISLQSNQLSGKIPLEV  116 (214)
Q Consensus        38 w~gv~c~~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~ls~N~l~g~~p~~~  116 (214)
                      ..++.+....+|+.|++++|.+++..+ ..+..+++|+.|++++|.+++..+..+. .+++|++|++++|.+++. |. .
T Consensus       111 l~~~~~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~  187 (317)
T 3o53_A          111 ISRVSCSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-Q  187 (317)
T ss_dssp             CSEEEECCCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-C
T ss_pred             cCCcCccccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-c
Confidence            344444444567777777777775444 6677777888888888887766666553 577777777777777633 32 2


Q ss_pred             cccccchhhhcccccceeecchhhhhcCCCCchhhhh
Q 035742          117 GLLTHLKVLHFQFNQLKLLVLVLEVIKGKHPRDFLCS  153 (214)
Q Consensus       117 ~~l~~L~~L~l~~N~l~g~~p~~~~l~g~~p~~~~~~  153 (214)
                      ..+++|++|++++|++++.++.+..+....-.++..|
T Consensus       188 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN  224 (317)
T ss_dssp             CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS
T ss_pred             cccccCCEEECCCCcCCcchhhhcccCcccEEECcCC
Confidence            3467777777777777776665544444444444433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.10  E-value=5.8e-11  Score=97.28  Aligned_cols=89  Identities=18%  Similarity=0.235  Sum_probs=72.4

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|++++|.+++..+ ..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++ .+|..+..+++|++|+
T Consensus       193 ~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~  270 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY  270 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCT-TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence            467888888888886655 67888888888888888888777777888888888888888888 7888888888888888


Q ss_pred             cccccceeecc
Q 035742          127 FQFNQLKLLVL  137 (214)
Q Consensus       127 l~~N~l~g~~p  137 (214)
                      +++|++++..+
T Consensus       271 l~~N~l~~~~~  281 (332)
T 2ft3_A          271 LHTNNITKVGV  281 (332)
T ss_dssp             CCSSCCCBCCT
T ss_pred             CCCCCCCccCh
Confidence            88888876544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.09  E-value=4.5e-11  Score=103.50  Aligned_cols=84  Identities=21%  Similarity=0.226  Sum_probs=44.9

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeecccccccc-CCCccccccccchhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG-KIPLEVGLLTHLKVL  125 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~L  125 (214)
                      .+|+.|++++|.+++..| ..|..+++|++|++++|.++ .+|..  .+++|++|++++|.+++ .+|..|+++++|++|
T Consensus        45 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L  120 (520)
T 2z7x_B           45 SKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL  120 (520)
T ss_dssp             TTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred             ccccEEecCCCccCCcCh-HHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence            345555555555554434 45555555555555555555 34433  45555555555555554 245555555555555


Q ss_pred             hccccccee
Q 035742          126 HFQFNQLKL  134 (214)
Q Consensus       126 ~l~~N~l~g  134 (214)
                      ++++|++++
T Consensus       121 ~L~~n~l~~  129 (520)
T 2z7x_B          121 GLSTTHLEK  129 (520)
T ss_dssp             EEEESSCCG
T ss_pred             EecCcccch
Confidence            555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.06  E-value=1.8e-10  Score=100.84  Aligned_cols=92  Identities=17%  Similarity=0.188  Sum_probs=77.7

Q ss_pred             CCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcC--CChhhhhCCcccceeeccccccccCCCc-ccccccc
Q 035742           45 DAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLG--TIPSQIGNLSKLSYISLQSNQLSGKIPL-EVGLLTH  121 (214)
Q Consensus        45 ~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~N~l~g~~p~-~~~~l~~  121 (214)
                      ...+|+.|++++|.+++.+| ..+..+++|+.|++++|.+++  .+|..+..+++|+.|++++|++++.+|. .+..+++
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTT-TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             CCCCceEEECCCCccccchh-hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            45689999999999998888 889999999999999999986  3456788999999999999999975665 4778888


Q ss_pred             chhhhcccccceeecc
Q 035742          122 LKVLHFQFNQLKLLVL  137 (214)
Q Consensus       122 L~~L~l~~N~l~g~~p  137 (214)
                      |++|++++|++++.+|
T Consensus       430 L~~L~l~~n~l~~~~~  445 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVF  445 (562)
T ss_dssp             CCEEECCSSCCCGGGG
T ss_pred             CCEEECCCCCCCcchh
Confidence            8888888888877654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.05  E-value=9.7e-11  Score=101.19  Aligned_cols=94  Identities=21%  Similarity=0.194  Sum_probs=73.8

Q ss_pred             CCCeEEEEecCCCCccccCccccC-CCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFS-SFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV  124 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~  124 (214)
                      ..+|+.|+|++|.+++..| ..+. .+++|+.|++++|.+++. | .+..+++|+.|++++|.+++ +|..+..+++|+.
T Consensus       143 l~~L~~L~Ls~N~l~~~~~-~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~  218 (487)
T 3oja_A          143 RSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTW  218 (487)
T ss_dssp             GSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSE
T ss_pred             CCCCCEEECCCCCCCCcCh-HHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccE
Confidence            3579999999999998777 6665 789999999999998855 3 34468889999999999985 5556888889999


Q ss_pred             hhcccccceeecchhhhhc
Q 035742          125 LHFQFNQLKLLVLVLEVIK  143 (214)
Q Consensus       125 L~l~~N~l~g~~p~~~~l~  143 (214)
                      |++++|.+++.++.+..+.
T Consensus       219 L~Ls~N~l~~lp~~l~~l~  237 (487)
T 3oja_A          219 ISLRNNKLVLIEKALRFSQ  237 (487)
T ss_dssp             EECTTSCCCEECTTCCCCT
T ss_pred             EEecCCcCcccchhhccCC
Confidence            9999999987655444333

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.05  E-value=1.5e-10  Score=94.04  Aligned_cols=86  Identities=16%  Similarity=0.040  Sum_probs=71.7

Q ss_pred             CeEEEEecCCCCccccCcccc--CCCCCCcEEeCcCCcCcCCCh----hhhhCCcccceeeccccccccCCCcccccccc
Q 035742           48 RVINISLRNTGLSGTLSDFSF--SSFPQLVHLDLSLNGFLGTIP----SQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH  121 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~  121 (214)
                      +|++|++++|.+++..| ..+  ..+++|+.|++++|.+++..+    ..+..+++|++|++++|.+.+..|..|+.+++
T Consensus        92 ~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           92 RLKELTLEDLKITGTMP-PLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             CCCEEEEESCCCBSCCC-CCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             ceeEEEeeCCEeccchh-hhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            58999999999998888 776  888999999999999887554    34557888999999999988777788888888


Q ss_pred             chhhhccccccee
Q 035742          122 LKVLHFQFNQLKL  134 (214)
Q Consensus       122 L~~L~l~~N~l~g  134 (214)
                      |++|++++|++.+
T Consensus       171 L~~L~Ls~N~l~~  183 (310)
T 4glp_A          171 LTSLDLSDNPGLG  183 (310)
T ss_dssp             CCEEECCSCTTCH
T ss_pred             CCEEECCCCCCcc
Confidence            8888888888765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.04  E-value=8.3e-11  Score=103.46  Aligned_cols=96  Identities=26%  Similarity=0.410  Sum_probs=68.8

Q ss_pred             CCCCcCCCCCCCCCCcCc-----cccee-eeCCCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhh
Q 035742           19 LPSWTNATTNVSSKICPC-----AWFGI-SCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQI   92 (214)
Q Consensus        19 ~~~W~~~~~~~~~~~~~c-----~w~gv-~c~~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~   92 (214)
                      +.+| ..+..      +|     .|.|+ .|.. ++++.|++++|.|++ +| ..+  +++|+.|++++|.|+ .+|   
T Consensus        33 l~~W-~~~~~------~~~~~~~~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp-~~l--~~~L~~L~Ls~N~l~-~ip---   96 (571)
T 3cvr_A           33 WDKW-EKQAL------PGENRNEAVSLLKECLI-NQFSELQLNRLNLSS-LP-DNL--PPQITVLEITQNALI-SLP---   96 (571)
T ss_dssp             HHHH-HTTCC------TTCCHHHHHHHHHHHHH-TTCSEEECCSSCCSC-CC-SCC--CTTCSEEECCSSCCS-CCC---
T ss_pred             HHHH-hccCC------ccccccchhhhcccccc-CCccEEEeCCCCCCc-cC-HhH--cCCCCEEECcCCCCc-ccc---
Confidence            4567 34444      67     79999 6753 479999999999985 77 544  377888888888887 566   


Q ss_pred             hCCcccceeeccccccccCCCccccccccchhhhccccccee
Q 035742           93 GNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKL  134 (214)
Q Consensus        93 ~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g  134 (214)
                      ..+++|+.|++++|+|++ +|. +..  +|++|++++|+|++
T Consensus        97 ~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~  134 (571)
T 3cvr_A           97 ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM  134 (571)
T ss_dssp             CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred             cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence            456778888888887774 666 544  66667777776666

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.04  E-value=1.6e-10  Score=103.19  Aligned_cols=89  Identities=24%  Similarity=0.202  Sum_probs=50.3

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|+.|+|++|.++ .+|...|.++++|++|++++|.+.+..|..|+.+++|++|++++|.+++..|..++++++|++|++
T Consensus        74 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  152 (680)
T 1ziw_A           74 MLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL  152 (680)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEEC
T ss_pred             CcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEc
Confidence            4555555555555 333134555666666666666555444455556666666666666665555555555666666666


Q ss_pred             ccccceeecc
Q 035742          128 QFNQLKLLVL  137 (214)
Q Consensus       128 ~~N~l~g~~p  137 (214)
                      ++|.+++..+
T Consensus       153 ~~n~l~~~~~  162 (680)
T 1ziw_A          153 SNNKIQALKS  162 (680)
T ss_dssp             CSSCCCCBCH
T ss_pred             cCCcccccCH
Confidence            6666555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.03  E-value=2e-10  Score=97.71  Aligned_cols=90  Identities=20%  Similarity=0.198  Sum_probs=76.8

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|++++|.++ .+|  .+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..|.++++|++|
T Consensus       184 l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  260 (440)
T 3zyj_A          184 LSNLRYLNLAMCNLR-EIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI  260 (440)
T ss_dssp             CSSCCEEECTTSCCS-SCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred             ccccCeecCCCCcCc-ccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence            457889999999988 666  58888999999999999987778888899999999999999988788888888999999


Q ss_pred             hcccccceeecch
Q 035742          126 HFQFNQLKLLVLV  138 (214)
Q Consensus       126 ~l~~N~l~g~~p~  138 (214)
                      +|++|++++..+.
T Consensus       261 ~L~~N~l~~~~~~  273 (440)
T 3zyj_A          261 NLAHNNLTLLPHD  273 (440)
T ss_dssp             ECTTSCCCCCCTT
T ss_pred             ECCCCCCCccChh
Confidence            9999988876654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.03  E-value=1.6e-10  Score=93.97  Aligned_cols=92  Identities=23%  Similarity=0.260  Sum_probs=74.6

Q ss_pred             CCCCeEEEEecCCCCcc--ccCccccCCCCCCcEEeCcCCcCcCCCh-hhhhCCcccceeeccccccccCCCcccccccc
Q 035742           45 DAGRVINISLRNTGLSG--TLSDFSFSSFPQLVHLDLSLNGFLGTIP-SQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH  121 (214)
Q Consensus        45 ~~~~L~~L~L~~n~l~g--~~p~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~  121 (214)
                      ...+|+.|++++|.+++  .++...+..+++|+.|++++|.+++..| ..+..+++|++|++++|+++ .+|..+.  ++
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~  275 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK  275 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence            45689999999999983  2331345688999999999999997775 45667899999999999999 8888776  89


Q ss_pred             chhhhcccccceeecchhh
Q 035742          122 LKVLHFQFNQLKLLVLVLE  140 (214)
Q Consensus       122 L~~L~l~~N~l~g~~p~~~  140 (214)
                      |++|++++|++++. |.+.
T Consensus       276 L~~L~Ls~N~l~~~-p~~~  293 (312)
T 1wwl_A          276 LSVLDLSYNRLDRN-PSPD  293 (312)
T ss_dssp             EEEEECCSSCCCSC-CCTT
T ss_pred             ceEEECCCCCCCCC-hhHh
Confidence            99999999999886 4443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.03  E-value=2.2e-10  Score=97.73  Aligned_cols=90  Identities=20%  Similarity=0.163  Sum_probs=76.9

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|+|++|.++ .+|  .+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..|..+++|+.|
T Consensus       195 l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  271 (452)
T 3zyi_A          195 LFNLKYLNLGMCNIK-DMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL  271 (452)
T ss_dssp             CTTCCEEECTTSCCS-SCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccc-ccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence            457899999999988 455  58888999999999999988888889999999999999999988888888889999999


Q ss_pred             hcccccceeecch
Q 035742          126 HFQFNQLKLLVLV  138 (214)
Q Consensus       126 ~l~~N~l~g~~p~  138 (214)
                      +|++|++++.++.
T Consensus       272 ~L~~N~l~~~~~~  284 (452)
T 3zyi_A          272 NLAHNNLSSLPHD  284 (452)
T ss_dssp             ECCSSCCSCCCTT
T ss_pred             ECCCCcCCccChH
Confidence            9999998876654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.02  E-value=4.2e-10  Score=92.88  Aligned_cols=90  Identities=26%  Similarity=0.276  Sum_probs=71.9

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCc--cccccccch
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPL--EVGLLTHLK  123 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~--~~~~l~~L~  123 (214)
                      ..+|+.|++++|.+++..+ ..|.++++|++|++++|.+++..+..+..+++|++|++++|+++ .+|.  .+..+++|+
T Consensus        75 l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEE-DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQ  152 (353)
T ss_dssp             CTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCC
T ss_pred             CCCCCEEECCCCccCccCH-hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCc
Confidence            4578999999999986656 77899999999999999998655555888999999999999988 5554  678888888


Q ss_pred             hhhccccc-ceeecc
Q 035742          124 VLHFQFNQ-LKLLVL  137 (214)
Q Consensus       124 ~L~l~~N~-l~g~~p  137 (214)
                      +|++++|+ +++..+
T Consensus       153 ~L~l~~n~~~~~~~~  167 (353)
T 2z80_A          153 ILRVGNMDTFTKIQR  167 (353)
T ss_dssp             EEEEEESSSCCEECT
T ss_pred             EEECCCCccccccCH
Confidence            88888884 554433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.00  E-value=1.7e-10  Score=90.16  Aligned_cols=89  Identities=15%  Similarity=0.233  Sum_probs=62.8

Q ss_pred             CCCeEEEEecCCC-CccccCccccCCCCCCcEEeCcC-CcCcCCChhhhhCCcccceeeccccccccCCCccccccccch
Q 035742           46 AGRVINISLRNTG-LSGTLSDFSFSSFPQLVHLDLSL-NGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLK  123 (214)
Q Consensus        46 ~~~L~~L~L~~n~-l~g~~p~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~  123 (214)
                      ..+|+.|++++|. ++ .++...|.++++|+.|++++ |.+++..+..|..+++|++|++++|.+++ +|. +..+++|+
T Consensus        54 l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~  130 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD  130 (239)
T ss_dssp             CTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred             CCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence            3467888888886 66 44425677788888888887 77775555667777888888888887773 665 66666666


Q ss_pred             ---hhhcccc-cceeecc
Q 035742          124 ---VLHFQFN-QLKLLVL  137 (214)
Q Consensus       124 ---~L~l~~N-~l~g~~p  137 (214)
                         +|++++| ++++..+
T Consensus       131 ~L~~L~l~~N~~l~~i~~  148 (239)
T 2xwt_C          131 IFFILEITDNPYMTSIPV  148 (239)
T ss_dssp             SEEEEEEESCTTCCEECT
T ss_pred             cccEEECCCCcchhhcCc
Confidence               7777777 6666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.98  E-value=4.3e-10  Score=92.34  Aligned_cols=85  Identities=27%  Similarity=0.375  Sum_probs=60.2

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|++++|.++ .++ . +..+++|+.|++++|.+++ + +.+..+++|+.|++++|.+++ + ..+..+++|+.|+
T Consensus       221 ~~L~~L~l~~n~l~-~~~-~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~  293 (347)
T 4fmz_A          221 TRLNSLKIGNNKIT-DLS-P-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLF  293 (347)
T ss_dssp             TTCCEEECCSSCCC-CCG-G-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE
T ss_pred             CcCCEEEccCCccC-CCc-c-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEE
Confidence            46788888888877 444 3 7777788888888877764 3 357777777777777777773 3 3467777777777


Q ss_pred             cccccceeecch
Q 035742          127 FQFNQLKLLVLV  138 (214)
Q Consensus       127 l~~N~l~g~~p~  138 (214)
                      +++|++++..|.
T Consensus       294 L~~n~l~~~~~~  305 (347)
T 4fmz_A          294 LNNNQLGNEDME  305 (347)
T ss_dssp             CCSSCCCGGGHH
T ss_pred             CcCCcCCCcChh
Confidence            777777765553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.97  E-value=9.8e-10  Score=88.63  Aligned_cols=81  Identities=25%  Similarity=0.318  Sum_probs=36.7

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|+.|++++|.+++ ++  .+..+++|+.|++++|.+++ + +.+..+++|+.|++++|++++.  ..+..+++|+.|++
T Consensus        91 ~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L  163 (291)
T 1h6t_A           91 NLGWLFLDENKVKD-LS--SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL  163 (291)
T ss_dssp             TCCEEECCSSCCCC-GG--GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             CCCEEECCCCcCCC-Ch--hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEc
Confidence            34444444444442 22  24444444444444444442 1 2344444455555555544422  33444455555555


Q ss_pred             ccccceee
Q 035742          128 QFNQLKLL  135 (214)
Q Consensus       128 ~~N~l~g~  135 (214)
                      ++|++++.
T Consensus       164 ~~N~l~~~  171 (291)
T 1h6t_A          164 EDNQISDI  171 (291)
T ss_dssp             CSSCCCCC
T ss_pred             cCCccccc
Confidence            55555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.96  E-value=3.6e-10  Score=92.14  Aligned_cols=91  Identities=22%  Similarity=0.211  Sum_probs=66.6

Q ss_pred             CCeEEEEecCCCCccccCcccc-CCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSF-SSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      .+|+.|++++|.+++..+ ..+ ..+++|+.|++++|.+++. + ....+++|+.|++++|+++ .+|..+..+++|+.|
T Consensus       144 ~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L  219 (317)
T 3o53_A          144 SRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI  219 (317)
T ss_dssp             SSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEE
T ss_pred             CCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEE
Confidence            478888888888886555 555 4678888888888888743 3 3335788888888888888 455568888888888


Q ss_pred             hcccccceeecchhhh
Q 035742          126 HFQFNQLKLLVLVLEV  141 (214)
Q Consensus       126 ~l~~N~l~g~~p~~~~  141 (214)
                      ++++|++++..+.+..
T Consensus       220 ~L~~N~l~~l~~~~~~  235 (317)
T 3o53_A          220 SLRNNKLVLIEKALRF  235 (317)
T ss_dssp             ECTTSCCCEECTTCCC
T ss_pred             ECcCCcccchhhHhhc
Confidence            8888888865444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.96  E-value=9.1e-12  Score=94.90  Aligned_cols=82  Identities=21%  Similarity=0.246  Sum_probs=55.0

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|++++|.+++ +|  .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|++|+
T Consensus        48 ~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             CCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence            456777777777763 44  5666677777777777776 566666666777777777777763 44 466667777777


Q ss_pred             ccccccee
Q 035742          127 FQFNQLKL  134 (214)
Q Consensus       127 l~~N~l~g  134 (214)
                      +++|++++
T Consensus       122 l~~N~i~~  129 (198)
T 1ds9_A          122 MSNNKITN  129 (198)
T ss_dssp             ESEEECCC
T ss_pred             CCCCcCCc
Confidence            77777664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.96  E-value=1.3e-09  Score=88.66  Aligned_cols=80  Identities=23%  Similarity=0.351  Sum_probs=35.5

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|+.|++++|.+++ ++  .+..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+++ ++. +..+++|++|++
T Consensus        86 ~L~~L~L~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l  158 (308)
T 1h6u_A           86 KITELELSGNPLKN-VS--AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSI  158 (308)
T ss_dssp             SCCEEECCSCCCSC-CG--GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEEC
T ss_pred             CCCEEEccCCcCCC-ch--hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEc
Confidence            45555555555542 22  34445555555555555442 221 4444444444444444442 222 344444444444


Q ss_pred             cccccee
Q 035742          128 QFNQLKL  134 (214)
Q Consensus       128 ~~N~l~g  134 (214)
                      ++|++++
T Consensus       159 ~~n~l~~  165 (308)
T 1h6u_A          159 GNAQVSD  165 (308)
T ss_dssp             CSSCCCC
T ss_pred             cCCcCCC
Confidence            4444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.95  E-value=1.6e-09  Score=87.32  Aligned_cols=97  Identities=22%  Similarity=0.245  Sum_probs=76.8

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|++++|.++ .++ + +..+++|+.|++++|.+++ +| .+..+++|+.|++++|++++ + ..+..+++|++|
T Consensus        67 l~~L~~L~L~~n~l~-~~~-~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L  139 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLT-DIK-P-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL  139 (291)
T ss_dssp             CTTCCEEECCSSCCC-CCG-G-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEE
T ss_pred             CCCCCEEEccCCccC-CCc-c-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEE
Confidence            357999999999998 455 4 8999999999999999984 44 58999999999999999984 4 468889999999


Q ss_pred             hcccccceeecchhhhhcCCCCchh
Q 035742          126 HFQFNQLKLLVLVLEVIKGKHPRDF  150 (214)
Q Consensus       126 ~l~~N~l~g~~p~~~~l~g~~p~~~  150 (214)
                      ++++|++++. +.+..+....-.++
T Consensus       140 ~l~~n~l~~~-~~l~~l~~L~~L~L  163 (291)
T 1h6t_A          140 YLGNNKITDI-TVLSRLTKLDTLSL  163 (291)
T ss_dssp             ECCSSCCCCC-GGGGGCTTCSEEEC
T ss_pred             EccCCcCCcc-hhhccCCCCCEEEc
Confidence            9999999876 55544444333333

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.95  E-value=1.4e-09  Score=86.55  Aligned_cols=98  Identities=20%  Similarity=0.272  Sum_probs=70.1

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|++++|.++ .++ + +..+++|+.|++++|.+++ +|.. .. ++|+.|++++|++++ ++ .+..+++|+.|+
T Consensus        63 ~~L~~L~L~~N~i~-~~~-~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~  134 (263)
T 1xeu_A           63 TNLKELHLSHNQIS-DLS-P-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILS  134 (263)
T ss_dssp             TTCCEEECCSSCCC-CCG-G-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred             CCCCEEECCCCccC-CCh-h-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence            47888888888887 455 4 8888888888888888874 4432 23 788888888888874 44 588888999999


Q ss_pred             cccccceeecchhhhhcCCCCchhhhh
Q 035742          127 FQFNQLKLLVLVLEVIKGKHPRDFLCS  153 (214)
Q Consensus       127 l~~N~l~g~~p~~~~l~g~~p~~~~~~  153 (214)
                      +++|++++. +.+..+....-.++..|
T Consensus       135 Ls~N~i~~~-~~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A          135 IRNNKLKSI-VMLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             CTTSCCCBC-GGGGGCTTCCEEECTTS
T ss_pred             CCCCcCCCC-hHHccCCCCCEEECCCC
Confidence            999988875 45555544444444433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.94  E-value=1.5e-09  Score=88.13  Aligned_cols=90  Identities=21%  Similarity=0.389  Sum_probs=74.7

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|++++|.++ .++ . +..+++|++|++++|.+.+ ++ .+..+++|+.|++++|.+++ ++. +..+++|++|
T Consensus        62 l~~L~~L~L~~n~i~-~~~-~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L  134 (308)
T 1h6u_A           62 LNNLIGLELKDNQIT-DLA-P-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVL  134 (308)
T ss_dssp             CTTCCEEECCSSCCC-CCG-G-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEE
T ss_pred             cCCCCEEEccCCcCC-CCh-h-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEE
Confidence            357999999999998 566 4 8999999999999999984 44 68899999999999999984 554 8899999999


Q ss_pred             hcccccceeecchhhhhc
Q 035742          126 HFQFNQLKLLVLVLEVIK  143 (214)
Q Consensus       126 ~l~~N~l~g~~p~~~~l~  143 (214)
                      ++++|++++..+ +..+.
T Consensus       135 ~l~~n~l~~~~~-l~~l~  151 (308)
T 1h6u_A          135 YLDLNQITNISP-LAGLT  151 (308)
T ss_dssp             ECCSSCCCCCGG-GGGCT
T ss_pred             ECCCCccCcCcc-ccCCC
Confidence            999999987654 43333

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.94  E-value=1.4e-09  Score=86.40  Aligned_cols=99  Identities=24%  Similarity=0.266  Sum_probs=73.7

Q ss_pred             CCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742           45 DAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV  124 (214)
Q Consensus        45 ~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~  124 (214)
                      ...+|+.|++++|.++ .+| . +.. ++|+.|++++|.+++ ++ .+..+++|+.|++++|++++ ++ .+..+++|+.
T Consensus        83 ~l~~L~~L~L~~N~l~-~l~-~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~  154 (263)
T 1xeu_A           83 DLTKLEELSVNRNRLK-NLN-G-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEV  154 (263)
T ss_dssp             TCSSCCEEECCSSCCS-CCT-T-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCE
T ss_pred             cCCCCCEEECCCCccC-CcC-c-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCE
Confidence            3457899999999998 455 3 333 889999999999985 33 58889999999999999984 44 6888899999


Q ss_pred             hhcccccceeecchhhhhcCCCCchhhh
Q 035742          125 LHFQFNQLKLLVLVLEVIKGKHPRDFLC  152 (214)
Q Consensus       125 L~l~~N~l~g~~p~~~~l~g~~p~~~~~  152 (214)
                      |++++|++++. +.+..+....-.++..
T Consensus       155 L~L~~N~i~~~-~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          155 LDLHGNEITNT-GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             EECTTSCCCBC-TTSTTCCCCCEEEEEE
T ss_pred             EECCCCcCcch-HHhccCCCCCEEeCCC
Confidence            99999998876 4444444433333333

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.93  E-value=3e-10  Score=92.25  Aligned_cols=87  Identities=17%  Similarity=0.169  Sum_probs=46.6

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCC--Chhh--hhCCcccceeeccccccccCCCc----cccc
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGT--IPSQ--IGNLSKLSYISLQSNQLSGKIPL----EVGL  118 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~--~p~~--~~~l~~L~~L~ls~N~l~g~~p~----~~~~  118 (214)
                      .+|+.|+|++|.+++..+ ..|..+++|++|++++|.+.+.  ++..  +..+++|++|++++|+++ .++.    .++.
T Consensus       145 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             SCCCEEEEECCSSCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCcchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            356666666666654444 5566666666666666665431  1111  245555566666665554 2222    1344


Q ss_pred             cccchhhhcccccceee
Q 035742          119 LTHLKVLHFQFNQLKLL  135 (214)
Q Consensus       119 l~~L~~L~l~~N~l~g~  135 (214)
                      +++|++|++++|++++.
T Consensus       223 l~~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRAT  239 (310)
T ss_dssp             TCCCSSEECTTSCCCCC
T ss_pred             CCCCCEEECCCCCCCcc
Confidence            55566666666665554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.91  E-value=1.3e-09  Score=96.65  Aligned_cols=82  Identities=26%  Similarity=0.332  Sum_probs=38.5

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|+.|+|++|.|++ +|  .+..+++|+.|+|++|.+.+ + +.+..+++|+.|+|++|.+++.  ..+..+++|+.|+|
T Consensus        88 ~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L  160 (605)
T 1m9s_A           88 NLGWLFLDENKIKD-LS--SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL  160 (605)
T ss_dssp             TCCEEECCSSCCCC-CT--TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEEC
T ss_pred             CCCEEECcCCCCCC-Ch--hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEEC
Confidence            45555555555542 22  34555555555555555542 2 2344444455555555444422  33444444444444


Q ss_pred             ccccceeec
Q 035742          128 QFNQLKLLV  136 (214)
Q Consensus       128 ~~N~l~g~~  136 (214)
                      ++|++++.+
T Consensus       161 s~N~l~~~~  169 (605)
T 1m9s_A          161 EDNQISDIV  169 (605)
T ss_dssp             CSSCCCCCG
T ss_pred             cCCcCCCch
Confidence            444444433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.90  E-value=2.4e-09  Score=94.81  Aligned_cols=89  Identities=30%  Similarity=0.437  Sum_probs=51.3

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|+|++|.+.+ ++  .+..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+
T Consensus       109 ~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~  181 (605)
T 1m9s_A          109 KKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY  181 (605)
T ss_dssp             TTCCEEECTTSCCCC-CG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCEEEecCCCCCC-Cc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEE
Confidence            356666666666653 32  456666666666666666543  455666666666666666664333  56666666666


Q ss_pred             cccccceeecchhhhhc
Q 035742          127 FQFNQLKLLVLVLEVIK  143 (214)
Q Consensus       127 l~~N~l~g~~p~~~~l~  143 (214)
                      |++|+|++. |.+..+.
T Consensus       182 Ls~N~i~~l-~~l~~l~  197 (605)
T 1m9s_A          182 LSKNHISDL-RALAGLK  197 (605)
T ss_dssp             CCSSCCCBC-GGGTTCT
T ss_pred             CcCCCCCCC-hHHccCC
Confidence            666666553 3443333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.88  E-value=1.6e-09  Score=88.93  Aligned_cols=101  Identities=22%  Similarity=0.288  Sum_probs=84.0

Q ss_pred             CCCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742           45 DAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV  124 (214)
Q Consensus        45 ~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~  124 (214)
                      ...+|+.|++++|.+++ +  +.+..+++|+.|++++|.+++.  +.+..+++|+.|++++|.+++..|..+..+++|++
T Consensus       241 ~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          241 NLSQLTWLEIGTNQISD-I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             TCTTCCEEECCSSCCCC-C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             cCCCCCEEECCCCccCC-C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence            34589999999999984 4  4689999999999999999854  46889999999999999999888888999999999


Q ss_pred             hhcccccceeecchhhhhcCCCCchhh
Q 035742          125 LHFQFNQLKLLVLVLEVIKGKHPRDFL  151 (214)
Q Consensus       125 L~l~~N~l~g~~p~~~~l~g~~p~~~~  151 (214)
                      |++++|++++.+| +..+....-.++.
T Consensus       316 L~L~~n~l~~~~~-~~~l~~L~~L~l~  341 (347)
T 4fmz_A          316 LFLSQNHITDIRP-LASLSKMDSADFA  341 (347)
T ss_dssp             EECCSSSCCCCGG-GGGCTTCSEESSS
T ss_pred             EEccCCccccccC-hhhhhccceeehh
Confidence            9999999998777 5555444434333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.81  E-value=2.5e-09  Score=94.09  Aligned_cols=82  Identities=21%  Similarity=0.239  Sum_probs=60.6

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCccc-------ceeeccccccccCCCcccccc
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKL-------SYISLQSNQLSGKIPLEVGLL  119 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L-------~~L~ls~N~l~g~~p~~~~~l  119 (214)
                      .+|+.|+|++|.|++ +| . |.  ++|+.|++++|.|+ .+|. +..  +|       +.|++++|+|+ .+|..+..+
T Consensus       160 ~~L~~L~Ls~N~L~~-lp-~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l  229 (571)
T 3cvr_A          160 TSLEVLSVRNNQLTF-LP-E-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL  229 (571)
T ss_dssp             TTCCEEECCSSCCSC-CC-C-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred             CCcCEEECCCCCCCC-cc-h-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcC
Confidence            467777777777774 66 4 54  77888888888887 6665 443  66       88888888888 678878888


Q ss_pred             ccchhhhcccccceeecch
Q 035742          120 THLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus       120 ~~L~~L~l~~N~l~g~~p~  138 (214)
                      ++|+.|+|++|++++.+|.
T Consensus       230 ~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          230 DPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             CTTEEEECCSSSCCHHHHH
T ss_pred             CCCCEEEeeCCcCCCcCHH
Confidence            8888888888888887764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.81  E-value=5e-09  Score=89.68  Aligned_cols=66  Identities=26%  Similarity=0.317  Sum_probs=30.7

Q ss_pred             cCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcccccceeecc
Q 035742           68 FSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVL  137 (214)
Q Consensus        68 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p  137 (214)
                      +..+++|+.|++++|.+++..|  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++.+|
T Consensus       305 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred             hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence            3344444444444444443322  34444444444444444422  234455555555555555555544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.81  E-value=6.7e-09  Score=88.87  Aligned_cols=82  Identities=27%  Similarity=0.458  Sum_probs=41.1

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|+.|++++|.+++ ++  .+..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++|+.|++
T Consensus       244 ~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L  316 (466)
T 1o6v_A          244 NLTDLDLANNQISN-LA--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL  316 (466)
T ss_dssp             TCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred             CCCEEECCCCcccc-ch--hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence            45666666666553 22  15555555555555555553222  4455555555555555553222  444455555555


Q ss_pred             ccccceeec
Q 035742          128 QFNQLKLLV  136 (214)
Q Consensus       128 ~~N~l~g~~  136 (214)
                      ++|++++..
T Consensus       317 ~~n~l~~~~  325 (466)
T 1o6v_A          317 YFNNISDIS  325 (466)
T ss_dssp             CSSCCSCCG
T ss_pred             cCCcCCCch
Confidence            555554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.78  E-value=8.4e-11  Score=89.49  Aligned_cols=87  Identities=17%  Similarity=0.098  Sum_probs=77.1

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCC--ccccccccchh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIP--LEVGLLTHLKV  124 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~~L~~  124 (214)
                      .+|+.|++++|.++ .+| ..+..+++|+.|++++|.+++ +| .+..+++|+.|++++|+++ .++  ..+..+++|++
T Consensus        70 ~~L~~L~l~~n~l~-~l~-~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~  144 (198)
T 1ds9_A           70 ENLRILSLGRNLIK-KIE-NLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLED  144 (198)
T ss_dssp             TTCCEEEEEEEEEC-SCS-SHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSE
T ss_pred             CCCCEEECCCCCcc-ccc-chhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCE
Confidence            57999999999999 788 778888999999999999985 55 7999999999999999998 444  47889999999


Q ss_pred             hhcccccceeecch
Q 035742          125 LHFQFNQLKLLVLV  138 (214)
Q Consensus       125 L~l~~N~l~g~~p~  138 (214)
                      |++++|.+++.+|.
T Consensus       145 L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          145 LLLAGNPLYNDYKE  158 (198)
T ss_dssp             EEECSCHHHHHHHT
T ss_pred             EEecCCcccccccc
Confidence            99999999988764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.77  E-value=8.2e-09  Score=88.44  Aligned_cols=77  Identities=21%  Similarity=0.270  Sum_probs=38.4

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|+.|++++|.+++ +|   +..+++|++|++++|.+++. +  ++.+++|++|++++|++++ +|  ++.+++|++|++
T Consensus        65 ~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           65 GLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC  134 (457)
T ss_dssp             TCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred             CCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence            44555555555543 22   44555555555555555432 2  4455555555555555553 32  455555555555


Q ss_pred             cccccee
Q 035742          128 QFNQLKL  134 (214)
Q Consensus       128 ~~N~l~g  134 (214)
                      ++|++++
T Consensus       135 ~~N~l~~  141 (457)
T 3bz5_A          135 ARNTLTE  141 (457)
T ss_dssp             TTSCCSC
T ss_pred             CCCccce
Confidence            5555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.75  E-value=2.3e-08  Score=85.68  Aligned_cols=78  Identities=21%  Similarity=0.258  Sum_probs=39.6

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|++++|.+++ +|   +..+++|+.|++++|.+++.   .++.+++|+.|++++|++++ +|  ++.+++|++|+
T Consensus       170 ~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~  239 (457)
T 3bz5_A          170 TQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD  239 (457)
T ss_dssp             TTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred             CcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence            355566666665553 32   44555555555555555432   24445555555555555553 33  44455555555


Q ss_pred             ccccccee
Q 035742          127 FQFNQLKL  134 (214)
Q Consensus       127 l~~N~l~g  134 (214)
                      +++|++++
T Consensus       240 l~~N~l~~  247 (457)
T 3bz5_A          240 CSVNPLTE  247 (457)
T ss_dssp             CCSSCCSC
T ss_pred             eeCCcCCC
Confidence            55555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.72  E-value=1.3e-09  Score=91.11  Aligned_cols=87  Identities=21%  Similarity=0.284  Sum_probs=59.5

Q ss_pred             CCeEEEEecCCCCc--c---ccCccccCCCCCCcEEeCcCCcCc----CCChhhhhCCcccceeeccccccccC----CC
Q 035742           47 GRVINISLRNTGLS--G---TLSDFSFSSFPQLVHLDLSLNGFL----GTIPSQIGNLSKLSYISLQSNQLSGK----IP  113 (214)
Q Consensus        47 ~~L~~L~L~~n~l~--g---~~p~~~~~~l~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~ls~N~l~g~----~p  113 (214)
                      .+|+.|++++|.++  |   .++ ..+..+++|+.|++++|.++    +.+|..+..+++|+.|++++|.+++.    +|
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~-~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHH-TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHH-HHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            36777777777776  2   222 36667777777777777774    45677777777777777777777654    44


Q ss_pred             ccc--cccccchhhhccccccee
Q 035742          114 LEV--GLLTHLKVLHFQFNQLKL  134 (214)
Q Consensus       114 ~~~--~~l~~L~~L~l~~N~l~g  134 (214)
                      ..+  +.+++|++|+|++|.+++
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHhhccCCCeEEEECcCCcCCH
Confidence            555  336777777777777776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.72  E-value=1.2e-08  Score=87.22  Aligned_cols=58  Identities=29%  Similarity=0.481  Sum_probs=44.0

Q ss_pred             CCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhccccccee--ecc
Q 035742           72 PQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKL--LVL  137 (214)
Q Consensus        72 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g--~~p  137 (214)
                      ++|+.|++++|++++ +|..   +++|+.|++++|+++ .+|.   .+++|++|++++|++++  .+|
T Consensus       317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip  376 (454)
T 1jl5_A          317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIP  376 (454)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCC
T ss_pred             CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCCh
Confidence            478888888888874 5543   577888888888888 5666   46788888888888887  455

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.71  E-value=1.2e-08  Score=90.55  Aligned_cols=82  Identities=22%  Similarity=0.222  Sum_probs=61.6

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|++++|.|+ .+|    ..+++|+.|++++|.|+ .+|.   .+++|+.|++++|+|+ .+|..+.++++|+.|+
T Consensus       221 ~~L~~L~Ls~N~L~-~lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~  290 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN  290 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred             CCCCEEEccCCccC-cCC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence            35666666666666 344    34567777888888777 4554   5678888888888888 7788888888899999


Q ss_pred             cccccceeecch
Q 035742          127 FQFNQLKLLVLV  138 (214)
Q Consensus       127 l~~N~l~g~~p~  138 (214)
                      +++|.+++.+|.
T Consensus       291 L~~N~l~~~~~~  302 (622)
T 3g06_A          291 LEGNPLSERTLQ  302 (622)
T ss_dssp             CCSCCCCHHHHH
T ss_pred             ecCCCCCCcCHH
Confidence            999988887765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.67  E-value=6.8e-09  Score=84.70  Aligned_cols=84  Identities=21%  Similarity=0.160  Sum_probs=46.1

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCC-ChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGT-IPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      +++.|++++|.+.+..+  .+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+++..|..++.+++|++|+
T Consensus        71 ~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TCSEEECTTCEECSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             cceEEEcCCccccccch--hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            45555555555554333  244555666666666655543 555555555666666665555555555555555555555


Q ss_pred             cccc-cce
Q 035742          127 FQFN-QLK  133 (214)
Q Consensus       127 l~~N-~l~  133 (214)
                      +++| .++
T Consensus       149 L~~~~~l~  156 (336)
T 2ast_B          149 LSGCSGFS  156 (336)
T ss_dssp             CTTCBSCC
T ss_pred             CCCCCCCC
Confidence            5555 344

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.66  E-value=1.8e-09  Score=88.11  Aligned_cols=85  Identities=19%  Similarity=0.205  Sum_probs=42.8

Q ss_pred             CeEEEEecCCCCccc-cCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeecccc-ccccC-CCccccccccchh
Q 035742           48 RVINISLRNTGLSGT-LSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSN-QLSGK-IPLEVGLLTHLKV  124 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~-~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N-~l~g~-~p~~~~~l~~L~~  124 (214)
                      +|+.|++++|.+++. ++ ..+..+++|+.|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++
T Consensus        94 ~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTLH-GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             CCCEEECTTCEECHHHHH-HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCEEEccCCCcCHHHHH-HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            455555555555433 44 44555555555555555555445555555555555555555 34431 3333444445555


Q ss_pred             hhcccc-cce
Q 035742          125 LHFQFN-QLK  133 (214)
Q Consensus       125 L~l~~N-~l~  133 (214)
                      |++++| .++
T Consensus       173 L~l~~~~~l~  182 (336)
T 2ast_B          173 LNLSWCFDFT  182 (336)
T ss_dssp             EECCCCTTCC
T ss_pred             EcCCCCCCcC
Confidence            555554 444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.66  E-value=3.1e-09  Score=88.73  Aligned_cols=89  Identities=18%  Similarity=0.261  Sum_probs=60.2

Q ss_pred             CCeEEEEecCCCCc-cccCc--cccCCCCCCcEEeCcCCcCc--C---CChhhhhCCcccceeeccccccc----cCCCc
Q 035742           47 GRVINISLRNTGLS-GTLSD--FSFSSFPQLVHLDLSLNGFL--G---TIPSQIGNLSKLSYISLQSNQLS----GKIPL  114 (214)
Q Consensus        47 ~~L~~L~L~~n~l~-g~~p~--~~~~~l~~L~~L~l~~n~l~--~---~~p~~~~~l~~L~~L~ls~N~l~----g~~p~  114 (214)
                      .+|+.|++++|.++ +.++.  ..+..+++|+.|++++|.++  |   ..|..+..+++|+.|++++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            56777777777776 22330  24556777777887777776  2   23336667777777787777774    45677


Q ss_pred             cccccccchhhhcccccceee
Q 035742          115 EVGLLTHLKVLHFQFNQLKLL  135 (214)
Q Consensus       115 ~~~~l~~L~~L~l~~N~l~g~  135 (214)
                      .+..+++|++|+|++|.+++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHH
T ss_pred             HHccCCCcCEEECCCCCCchh
Confidence            777777777777777777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.63  E-value=5.5e-09  Score=92.80  Aligned_cols=75  Identities=23%  Similarity=0.328  Sum_probs=41.9

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +++.|++++|+++ .+| ..+.  ++|+.|++++|.++ .+|.   .+++|++|++++|+|+ .+|.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp-~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLP-DCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCC-SCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccC-hhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            4666666666666 556 4443  56666666666665 3443   4455666666666655 4444   3344555555


Q ss_pred             cccccee
Q 035742          128 QFNQLKL  134 (214)
Q Consensus       128 ~~N~l~g  134 (214)
                      ++|++++
T Consensus       109 s~N~l~~  115 (622)
T 3g06_A          109 FSNPLTH  115 (622)
T ss_dssp             CSCCCCC
T ss_pred             cCCcCCC
Confidence            5555444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.63  E-value=8.7e-09  Score=85.39  Aligned_cols=86  Identities=19%  Similarity=0.177  Sum_probs=49.5

Q ss_pred             CeEEEEecCCCCccccCccccCCC-----CCCcEEeCcCCcCcCCChhhhhC----C-cccceeeccccccccCCCcccc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSF-----PQLVHLDLSLNGFLGTIPSQIGN----L-SKLSYISLQSNQLSGKIPLEVG  117 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~----l-~~L~~L~ls~N~l~g~~p~~~~  117 (214)
                      +|++|+|++|.+++..+ ..+..+     ++|+.|++++|.+++..+..+..    + ++|+.|++++|.+++..+..+.
T Consensus        52 ~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  130 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNS-DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK  130 (362)
T ss_dssp             TCCEEECCSSCGGGSCH-HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             ceeEEECcCCCCCHHHH-HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence            56666666666664434 444443     66666666666666555554333    2 5666666666666644443332


Q ss_pred             c-----cccchhhhccccccee
Q 035742          118 L-----LTHLKVLHFQFNQLKL  134 (214)
Q Consensus       118 ~-----l~~L~~L~l~~N~l~g  134 (214)
                      .     .++|++|++++|+++.
T Consensus       131 ~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A          131 QAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             HHHTTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCceeEEEccCCcCCH
Confidence            2     2466666777666663

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.59  E-value=1.8e-08  Score=83.54  Aligned_cols=90  Identities=21%  Similarity=0.227  Sum_probs=75.0

Q ss_pred             CCeEEEEecCCCCccccCc----cccCCCC-CCcEEeCcCCcCcCCChhhhhCC-----cccceeeccccccccCCCccc
Q 035742           47 GRVINISLRNTGLSGTLSD----FSFSSFP-QLVHLDLSLNGFLGTIPSQIGNL-----SKLSYISLQSNQLSGKIPLEV  116 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~----~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~ls~N~l~g~~p~~~  116 (214)
                      .+|+.|+|++|.++ ..+.    ..|..++ +|+.|++++|.+++..+..+..+     ++|++|++++|.+++..+..+
T Consensus        22 ~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            46999999999998 4442    4567888 89999999999998888888775     999999999999997777655


Q ss_pred             ccc-----ccchhhhcccccceeecc
Q 035742          117 GLL-----THLKVLHFQFNQLKLLVL  137 (214)
Q Consensus       117 ~~l-----~~L~~L~l~~N~l~g~~p  137 (214)
                      ...     ++|++|++++|++++..+
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHH
Confidence            443     899999999999987655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.58  E-value=5.6e-08  Score=83.15  Aligned_cols=79  Identities=24%  Similarity=0.310  Sum_probs=55.8

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|++|++++|.+++ +|  .|..+++|++|++++|.+++ +|..+   .+|++|++++|++++ +| .++++++|++|+
T Consensus       131 ~~L~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            467777777777774 66  37777888888888887774 45332   467777777777774 55 477777777777


Q ss_pred             ccccccee
Q 035742          127 FQFNQLKL  134 (214)
Q Consensus       127 l~~N~l~g  134 (214)
                      +++|++++
T Consensus       202 l~~N~l~~  209 (454)
T 1jl5_A          202 ADNNSLKK  209 (454)
T ss_dssp             CCSSCCSS
T ss_pred             CCCCcCCc
Confidence            77777765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.47  E-value=7.3e-08  Score=76.78  Aligned_cols=83  Identities=24%  Similarity=0.278  Sum_probs=57.8

Q ss_pred             EEecCCCCc---cccCccccCCCCCCcEEeCcCCcCcC--CChhhhhCCcccceeeccccccccCCCccccccc--cchh
Q 035742           52 ISLRNTGLS---GTLSDFSFSSFPQLVHLDLSLNGFLG--TIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLT--HLKV  124 (214)
Q Consensus        52 L~L~~n~l~---g~~p~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~--~L~~  124 (214)
                      ++++.|...   +.++ ....++++|+.|+|++|.|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++
T Consensus       148 l~l~~N~~~~~~~~l~-i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~  224 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLR-IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEE  224 (267)
T ss_dssp             CCCCTTSHHHHHHHHH-HHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSE
T ss_pred             ccccCCHHHHHHHHHH-HHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcce
Confidence            556666432   2222 222467888888888888886  4556777888888888888888854  3345555  7888


Q ss_pred             hhcccccceeecc
Q 035742          125 LHFQFNQLKLLVL  137 (214)
Q Consensus       125 L~l~~N~l~g~~p  137 (214)
                      |+|++|.+.+.+|
T Consensus       225 L~L~~Npl~~~~~  237 (267)
T 3rw6_A          225 LWLDGNSLCDTFR  237 (267)
T ss_dssp             EECTTSTTGGGCS
T ss_pred             EEccCCcCccccC
Confidence            8888888887655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.43  E-value=1.6e-08  Score=85.85  Aligned_cols=87  Identities=17%  Similarity=0.070  Sum_probs=58.3

Q ss_pred             CCeEEEEecCCCCccccCccccC-----CCCCCcEEeCcCCcCcCC----ChhhhhCCcccceeeccccccccCCCcccc
Q 035742           47 GRVINISLRNTGLSGTLSDFSFS-----SFPQLVHLDLSLNGFLGT----IPSQIGNLSKLSYISLQSNQLSGKIPLEVG  117 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~-----~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~  117 (214)
                      .+|+.|++++|.++...+ ..+.     ..++|+.|++++|.+++.    ++..+..+++|+.|++++|.+++..+..+.
T Consensus       284 ~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  362 (461)
T 1z7x_W          284 ESLKELSLAGNELGDEGA-RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC  362 (461)
T ss_dssp             TTCCEEECTTCCCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred             CCcceEECCCCCCchHHH-HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence            468888888888764322 2222     235788888888887754    455666778888888888877754444343


Q ss_pred             c-----cccchhhhccccccee
Q 035742          118 L-----LTHLKVLHFQFNQLKL  134 (214)
Q Consensus       118 ~-----l~~L~~L~l~~N~l~g  134 (214)
                      .     .++|++|++++|.+++
T Consensus       363 ~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          363 QGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHcCCCCceEEEECCCCCCCh
Confidence            2     4578888888887774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.37  E-value=2.2e-07  Score=73.97  Aligned_cols=75  Identities=31%  Similarity=0.356  Sum_probs=54.2

Q ss_pred             cCCCCCCcE--EeCcCCcCcCCChh----hhhCCcccceeecccccccc--CCCccccccccchhhhcccccceeecchh
Q 035742           68 FSSFPQLVH--LDLSLNGFLGTIPS----QIGNLSKLSYISLQSNQLSG--KIPLEVGLLTHLKVLHFQFNQLKLLVLVL  139 (214)
Q Consensus        68 ~~~l~~L~~--L~l~~n~l~~~~p~----~~~~l~~L~~L~ls~N~l~g--~~p~~~~~l~~L~~L~l~~N~l~g~~p~~  139 (214)
                      |...+.|..  ++++.|... .++.    ...++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++. ..+
T Consensus       137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l  214 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL  214 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG
T ss_pred             cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh
Confidence            444455555  677888543 3333    23568999999999999997  4567778999999999999999975 445


Q ss_pred             hhhcC
Q 035742          140 EVIKG  144 (214)
Q Consensus       140 ~~l~g  144 (214)
                      ..+.+
T Consensus       215 ~~l~~  219 (267)
T 3rw6_A          215 DKIKG  219 (267)
T ss_dssp             GGGTT
T ss_pred             hhccc
Confidence            55553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.32  E-value=3.7e-07  Score=75.18  Aligned_cols=69  Identities=19%  Similarity=0.260  Sum_probs=54.8

Q ss_pred             CCCCeEEEEecCCCCccccCccccCCCCCCcE-EeCcCCcCcCCChhhhhCCcccceeeccccccccCCC
Q 035742           45 DAGRVINISLRNTGLSGTLSDFSFSSFPQLVH-LDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIP  113 (214)
Q Consensus        45 ~~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~-L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p  113 (214)
                      ...+|+.|+|++|.+.+.+|...|.++++++. +.++.|++....|..|..+++|++|++++|++.+..+
T Consensus        52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCc
Confidence            34689999999999876777467888988775 5667788986667788999999999999998874333

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.25  E-value=9.3e-07  Score=72.13  Aligned_cols=88  Identities=15%  Similarity=0.171  Sum_probs=75.9

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccc-eeeccccccccCCCccccccccchhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLS-YISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      .+|+.|+|++|.++ .+|+..|.++.+|+.+++.+| +...-+..|.++.+|+ .+++.+ .++..-+..|.++++|+.+
T Consensus       226 ~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          226 PNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             TTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             CCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            47999999999998 777688999999999999998 7655666799999999 999988 7775667889999999999


Q ss_pred             hcccccceeecc
Q 035742          126 HFQFNQLKLLVL  137 (214)
Q Consensus       126 ~l~~N~l~g~~p  137 (214)
                      +++.|+++...+
T Consensus       303 ~l~~n~i~~I~~  314 (329)
T 3sb4_A          303 LATGDKITTLGD  314 (329)
T ss_dssp             EECSSCCCEECT
T ss_pred             EeCCCccCccch
Confidence            999998876543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.23  E-value=1.4e-07  Score=80.12  Aligned_cols=86  Identities=23%  Similarity=0.268  Sum_probs=50.3

Q ss_pred             CeEEEEecCCCCcc----ccCccccCCCCCCcEEeCcCCcCcCCChhhhhC-----CcccceeeccccccccC----CCc
Q 035742           48 RVINISLRNTGLSG----TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGN-----LSKLSYISLQSNQLSGK----IPL  114 (214)
Q Consensus        48 ~L~~L~L~~n~l~g----~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~L~ls~N~l~g~----~p~  114 (214)
                      +|++|++++|.++.    .++ ..+..+++|++|++++|.++...+..+..     .++|++|++++|.+++.    ++.
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHH-HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHH-HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence            47777777777662    345 56667777777777777765433333322     34566666666666542    234


Q ss_pred             cccccccchhhhccccccee
Q 035742          115 EVGLLTHLKVLHFQFNQLKL  134 (214)
Q Consensus       115 ~~~~l~~L~~L~l~~N~l~g  134 (214)
                      .+..+++|++|++++|.++.
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHH
T ss_pred             HHhhCCCCCEEECcCCCcch
Confidence            44455666666666666543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.15  E-value=2.1e-07  Score=77.64  Aligned_cols=85  Identities=16%  Similarity=0.205  Sum_probs=45.8

Q ss_pred             CeEEEEecCCCCccccCcccc-----CCCCCCcEEeCcCCcCcC----CChhhhhCCcccceeeccccccccC----CCc
Q 035742           48 RVINISLRNTGLSGTLSDFSF-----SSFPQLVHLDLSLNGFLG----TIPSQIGNLSKLSYISLQSNQLSGK----IPL  114 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~-----~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~g~----~p~  114 (214)
                      +++.|+|++|.|+..-. ..+     ...+.|+.|++++|.++.    .++..+...++|++|+|++|.|+..    ++.
T Consensus       127 ~L~~L~Ls~n~l~~~~~-~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~  205 (372)
T 3un9_A          127 RARKLGLQLNSLGPEAC-KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA  205 (372)
T ss_dssp             TEEEEECCSSCCCHHHH-HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHH-HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence            56666666666652211 222     234566666666666642    1333345566666666666666531    233


Q ss_pred             cccccccchhhhcccccce
Q 035742          115 EVGLLTHLKVLHFQFNQLK  133 (214)
Q Consensus       115 ~~~~l~~L~~L~l~~N~l~  133 (214)
                      .+...++|++|+|++|.++
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCC
T ss_pred             HHhcCCCcCeEECCCCCCC
Confidence            4445556666666666655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.04  E-value=8.7e-07  Score=73.89  Aligned_cols=65  Identities=20%  Similarity=0.311  Sum_probs=27.3

Q ss_pred             CCCCCCcEEeCcCCcCcCC----ChhhhhCCcccceeeccccccccC----CCccccccccchhhhcccccce
Q 035742           69 SSFPQLVHLDLSLNGFLGT----IPSQIGNLSKLSYISLQSNQLSGK----IPLEVGLLTHLKVLHFQFNQLK  133 (214)
Q Consensus        69 ~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~  133 (214)
                      ...+.|++|+|++|.++..    +...+...++|+.|++++|.|+..    +...+...++|++|+|++|.|+
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            3444455555555544321    123333444455555555544421    1222223344455555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.85  E-value=3.2e-06  Score=63.41  Aligned_cols=88  Identities=14%  Similarity=0.102  Sum_probs=68.3

Q ss_pred             CCCeEEEEecCC-CCccc----cCccccCCCCCCcEEeCcCCcCcCC----ChhhhhCCcccceeeccccccccC----C
Q 035742           46 AGRVINISLRNT-GLSGT----LSDFSFSSFPQLVHLDLSLNGFLGT----IPSQIGNLSKLSYISLQSNQLSGK----I  112 (214)
Q Consensus        46 ~~~L~~L~L~~n-~l~g~----~p~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~----~  112 (214)
                      ..+|++|+|++| .+...    +. ..+...+.|++|+|++|.+...    +...+...++|++|+|++|.|...    +
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            457999999999 87632    33 5567788999999999999642    344556678899999999999743    4


Q ss_pred             Cccccccccchhhhc--cccccee
Q 035742          113 PLEVGLLTHLKVLHF--QFNQLKL  134 (214)
Q Consensus       113 p~~~~~l~~L~~L~l--~~N~l~g  134 (214)
                      ...+...++|++|+|  ++|.+..
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCH
Confidence            556777788999999  8898864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.83  E-value=1.3e-06  Score=76.48  Aligned_cols=63  Identities=17%  Similarity=0.133  Sum_probs=30.6

Q ss_pred             CCCCcEEeCcCCcCcC-CChhhhhCCcccceeeccccccccC-CCccccccccchhhhcccccce
Q 035742           71 FPQLVHLDLSLNGFLG-TIPSQIGNLSKLSYISLQSNQLSGK-IPLEVGLLTHLKVLHFQFNQLK  133 (214)
Q Consensus        71 l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~L~l~~N~l~  133 (214)
                      +++|+.|++++|.+++ .++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|+++
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            4455555555555543 2233334455555555555555432 2222344555555555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.77  E-value=2.4e-06  Score=64.11  Aligned_cols=87  Identities=20%  Similarity=0.173  Sum_probs=67.5

Q ss_pred             CCCeEEEEecCCCCccc----cCccccCCCCCCcEEeCcCCcCcCC----ChhhhhCCcccceeec--cccccccC----
Q 035742           46 AGRVINISLRNTGLSGT----LSDFSFSSFPQLVHLDLSLNGFLGT----IPSQIGNLSKLSYISL--QSNQLSGK----  111 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l--s~N~l~g~----  111 (214)
                      ..+|++|+|++|.|...    +. ..+...+.|++|+|++|.|...    +...+...++|++|++  ++|.|...    
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~-~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~  142 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALA-EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  142 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHH-HHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             CCCcCEEECcCCCCChHHHHHHH-HHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence            35799999999998632    33 4455668999999999999743    4556777889999999  88999743    


Q ss_pred             CCccccccccchhhhcccccce
Q 035742          112 IPLEVGLLTHLKVLHFQFNQLK  133 (214)
Q Consensus       112 ~p~~~~~l~~L~~L~l~~N~l~  133 (214)
                      +...+...++|++|++++|.+.
T Consensus       143 l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          143 IANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCcCEEeccCCCCC
Confidence            3344555688999999999875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.70  E-value=7.2e-06  Score=71.64  Aligned_cols=16  Identities=13%  Similarity=0.351  Sum_probs=7.6

Q ss_pred             cccccchhhhcccccc
Q 035742          117 GLLTHLKVLHFQFNQL  132 (214)
Q Consensus       117 ~~l~~L~~L~l~~N~l  132 (214)
                      ..+++|++|++++|.+
T Consensus       290 ~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          290 PFAAQIRKLDLLYALL  305 (592)
T ss_dssp             GGGGGCCEEEETTCCC
T ss_pred             hhcCCCcEEecCCCcC
Confidence            3344455555555443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.62  E-value=1.9e-05  Score=58.82  Aligned_cols=83  Identities=10%  Similarity=0.061  Sum_probs=63.0

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCc-CcCCChhhhhCC----cccceeeccccc-cccCCCcccccccc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNG-FLGTIPSQIGNL----SKLSYISLQSNQ-LSGKIPLEVGLLTH  121 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~ls~N~-l~g~~p~~~~~l~~  121 (214)
                      +|++||++++.++..-- ..+.++++|+.|+|+++. ++..--..+..+    ++|++|+++++. ++..--..+.++++
T Consensus        62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            69999999999873322 567899999999999985 664444456654    479999999975 76433345678899


Q ss_pred             chhhhccccc
Q 035742          122 LKVLHFQFNQ  131 (214)
Q Consensus       122 L~~L~l~~N~  131 (214)
                      |++|++++..
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.61  E-value=3.8e-05  Score=62.48  Aligned_cols=77  Identities=17%  Similarity=0.170  Sum_probs=66.5

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCc-EEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLV-HLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~-~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      .+|+.|+|.+| ++ .+++..|.++.+|+ .+++.+ .++..-+..|.++++|+.++++.|.++..-+..|.++++|+.+
T Consensus       250 ~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          250 KYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             TTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             CCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence            47999999998 77 67768899999999 999998 7775566789999999999999999996666789999999887


Q ss_pred             h
Q 035742          126 H  126 (214)
Q Consensus       126 ~  126 (214)
                      +
T Consensus       327 y  327 (329)
T 3sb4_A          327 Y  327 (329)
T ss_dssp             E
T ss_pred             c
Confidence            5

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.57  E-value=6.1e-06  Score=72.11  Aligned_cols=62  Identities=11%  Similarity=0.148  Sum_probs=30.3

Q ss_pred             CCCCcEEeCcCCcCcCCChhhh-hCCcccceeeccccccccCCCc-cccccccchhhhcccccc
Q 035742           71 FPQLVHLDLSLNGFLGTIPSQI-GNLSKLSYISLQSNQLSGKIPL-EVGLLTHLKVLHFQFNQL  132 (214)
Q Consensus        71 l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~N~l~g~~p~-~~~~l~~L~~L~l~~N~l  132 (214)
                      +++|+.|++++|.+++.....+ ..+++|+.|++++|.+++.... .+..+++|++|++++|++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            4455555555555543333333 3455555555555555432222 223355555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.39  E-value=2.7e-05  Score=67.96  Aligned_cols=84  Identities=17%  Similarity=0.134  Sum_probs=54.6

Q ss_pred             CCeEEEEecCCCCccccCccccC-CCCCCcEEeCcCC-cCcCC-ChhhhhCCcccceeeccccccccCCCcccc----cc
Q 035742           47 GRVINISLRNTGLSGTLSDFSFS-SFPQLVHLDLSLN-GFLGT-IPSQIGNLSKLSYISLQSNQLSGKIPLEVG----LL  119 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~-~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~----~l  119 (214)
                      .+|++|+|++|.+++..+ ..+. .+++|+.|++++| .++.. ++..+..+++|++|++++|.+++..+..+.    .+
T Consensus       105 ~~L~~L~L~~~~~~~~~~-~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCL-ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             TTCCEEEEESCBCCHHHH-HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCeEEeeCcEEcHHHH-HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            468888888888775554 4444 5778888888877 44422 344445778888888888877654443332    44


Q ss_pred             ccchhhhccccc
Q 035742          120 THLKVLHFQFNQ  131 (214)
Q Consensus       120 ~~L~~L~l~~N~  131 (214)
                      ++|+.|++++|.
T Consensus       184 ~~L~~L~l~~~~  195 (594)
T 2p1m_B          184 TSLVSLNISCLA  195 (594)
T ss_dssp             CCCCEEECTTCC
T ss_pred             CcCcEEEecccC
Confidence            567777776664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.15  E-value=9.4e-05  Score=61.35  Aligned_cols=87  Identities=13%  Similarity=0.216  Sum_probs=48.8

Q ss_pred             CCeEEEEecCCCCccccCcccc--CCCCCCcEEeCcC--CcCcCC-----Chhhh--hCCcccceeeccccccccCCCcc
Q 035742           47 GRVINISLRNTGLSGTLSDFSF--SSFPQLVHLDLSL--NGFLGT-----IPSQI--GNLSKLSYISLQSNQLSGKIPLE  115 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~--~~l~~L~~L~l~~--n~l~~~-----~p~~~--~~l~~L~~L~ls~N~l~g~~p~~  115 (214)
                      .+|+.|+|..+.+....- ..+  ..+++|+.|+|+.  |...+.     +...+  ..+++|+.|++.+|.+....+..
T Consensus       193 ~~L~~L~L~~~~l~~~~l-~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          193 PNLKSLEIISGGLPDSVV-EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             TTCSEEEEECSBCCHHHH-HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             CCCcEEEEecCCCChHHH-HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            467888887776653221 222  2577777777642  221111     11112  23677777777777765433322


Q ss_pred             c---cccccchhhhccccccee
Q 035742          116 V---GLLTHLKVLHFQFNQLKL  134 (214)
Q Consensus       116 ~---~~l~~L~~L~l~~N~l~g  134 (214)
                      +   ..+++|++|+|+.|.+..
T Consensus       272 la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHhCccCCCCCEEECCCCCCCh
Confidence            2   245677777777777765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.00  E-value=0.00094  Score=46.97  Aligned_cols=56  Identities=21%  Similarity=0.248  Sum_probs=41.4

Q ss_pred             EEEecCCCCc-cccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccc
Q 035742           51 NISLRNTGLS-GTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS  109 (214)
Q Consensus        51 ~L~L~~n~l~-g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  109 (214)
                      .++-++++++ ..+| ..+  -++|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP-~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLP-TAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSC-SCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCC-CCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5556666665 2455 322  246899999999999555566888999999999999875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.90  E-value=0.002  Score=45.22  Aligned_cols=37  Identities=22%  Similarity=0.274  Sum_probs=18.6

Q ss_pred             ccceeeccccccccCCCccccccccchhhhcccccce
Q 035742           97 KLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLK  133 (214)
Q Consensus        97 ~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~  133 (214)
                      +|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            3555555555555222333455555555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.49  E-value=0.0028  Score=53.11  Aligned_cols=81  Identities=15%  Similarity=0.154  Sum_probs=48.6

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCc-----CCChhhhhCCcccceeeccccccccCCCcccccccc
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFL-----GTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTH  121 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~-----~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~  121 (214)
                      .+|+.+.+. +.++ .++...|.++++|+.+++.+|.+.     ..-+..|..+++|+.+.+.. .++..-...|.++++
T Consensus       248 ~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~  324 (401)
T 4fdw_A          248 SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRK  324 (401)
T ss_dssp             CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCS
T ss_pred             CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCC
Confidence            356777773 4455 454466777777777777766553     23344566677777777763 355334455666666


Q ss_pred             chhhhcccc
Q 035742          122 LKVLHFQFN  130 (214)
Q Consensus       122 L~~L~l~~N  130 (214)
                      |+.+.+..|
T Consensus       325 L~~l~lp~~  333 (401)
T 4fdw_A          325 VTQLTIPAN  333 (401)
T ss_dssp             CCEEEECTT
T ss_pred             ccEEEECcc
Confidence            666666444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.37  E-value=0.0026  Score=53.32  Aligned_cols=77  Identities=13%  Similarity=0.184  Sum_probs=34.3

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccc-----cCCCccccccccc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLS-----GKIPLEVGLLTHL  122 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~-----g~~p~~~~~l~~L  122 (214)
                      +|+.+++..+ ++ .++...|.+ .+|+.+.+. +.+...-...|.++++|+.+.+.+|.+.     ..-+..|.++.+|
T Consensus       227 ~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L  302 (401)
T 4fdw_A          227 QLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL  302 (401)
T ss_dssp             TCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC
T ss_pred             CCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC
Confidence            3445555442 33 333244444 455555552 2333223344555555555555544432     1223344555555


Q ss_pred             hhhhcc
Q 035742          123 KVLHFQ  128 (214)
Q Consensus       123 ~~L~l~  128 (214)
                      +.+++.
T Consensus       303 ~~l~l~  308 (401)
T 4fdw_A          303 ARFEIP  308 (401)
T ss_dssp             CEECCC
T ss_pred             CeEEeC
Confidence            555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.82  E-value=0.0015  Score=54.00  Aligned_cols=88  Identities=17%  Similarity=0.207  Sum_probs=63.1

Q ss_pred             CCCeEEEEecC--CCCccc-----cCcccc--CCCCCCcEEeCcCCcCcCCChhhhh---CCcccceeeccccccccC--
Q 035742           46 AGRVINISLRN--TGLSGT-----LSDFSF--SSFPQLVHLDLSLNGFLGTIPSQIG---NLSKLSYISLQSNQLSGK--  111 (214)
Q Consensus        46 ~~~L~~L~L~~--n~l~g~-----~p~~~~--~~l~~L~~L~l~~n~l~~~~p~~~~---~l~~L~~L~ls~N~l~g~--  111 (214)
                      ..+|+.|+|+.  |...+.     +. ..+  ..+++|+.|++.+|.+....+..+.   .+++|+.|+|+.|.+.+.  
T Consensus       218 lp~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~  296 (362)
T 2ra8_A          218 LPNLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA  296 (362)
T ss_dssp             CTTCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred             CCCCcEEEEeccccccccchhHHHHH-HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence            46899999863  221111     11 122  3589999999999998755454554   578999999999999853  


Q ss_pred             --CCccccccccchhhhccccccee
Q 035742          112 --IPLEVGLLTHLKVLHFQFNQLKL  134 (214)
Q Consensus       112 --~p~~~~~l~~L~~L~l~~N~l~g  134 (214)
                        ++..+..+++|+.|++++|.++.
T Consensus       297 ~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          297 RLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             HHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHHHhhcccCCcceEEECCCCcCCH
Confidence              44455678999999999998764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.58  E-value=0.012  Score=48.84  Aligned_cols=77  Identities=17%  Similarity=0.161  Sum_probs=34.4

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|+.+.+..+ ++ .+++..|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++..-..+|.++.+|+.+++
T Consensus       298 ~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          298 SLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             TCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred             cccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence            3444444332 33 333344555555555555432 33222334555555555555444 33222334555555555544


Q ss_pred             c
Q 035742          128 Q  128 (214)
Q Consensus       128 ~  128 (214)
                      .
T Consensus       374 p  374 (394)
T 4fs7_A          374 P  374 (394)
T ss_dssp             E
T ss_pred             C
Confidence            3

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.44  E-value=0.0064  Score=45.89  Aligned_cols=84  Identities=11%  Similarity=0.102  Sum_probs=60.3

Q ss_pred             CCCeEEEEecCC-CCcc----ccCccccCCCCCCcEEeCcCCcCcC----CChhhhhCCcccceeeccccccccC----C
Q 035742           46 AGRVINISLRNT-GLSG----TLSDFSFSSFPQLVHLDLSLNGFLG----TIPSQIGNLSKLSYISLQSNQLSGK----I  112 (214)
Q Consensus        46 ~~~L~~L~L~~n-~l~g----~~p~~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~g~----~  112 (214)
                      ...|++|+|++| .|..    .+- ..+..-+.|+.|+|++|.+..    .+-..+..=+.|+.|+|+.|.|...    +
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            457999999986 6642    133 556677899999999999963    2344455567899999999999742    2


Q ss_pred             Cccccccccchhhhcccc
Q 035742          113 PLEVGLLTHLKVLHFQFN  130 (214)
Q Consensus       113 p~~~~~l~~L~~L~l~~N  130 (214)
                      -..+..-+.|+.|+|++|
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence            233444567999999865

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.25  E-value=0.024  Score=46.98  Aligned_cols=76  Identities=11%  Similarity=0.159  Sum_probs=30.2

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      .|+.+.+..+-.  .+....|.++..|+.+.+.. .+...-...|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+
T Consensus       266 ~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          266 YLASVKMPDSVV--SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SCCEEECCTTCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             cccEEecccccc--eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence            345555543321  22223444445555554432 222122233444444444444332 22122233444444444444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.00  E-value=0.028  Score=46.08  Aligned_cols=78  Identities=10%  Similarity=0.123  Sum_probs=37.7

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      .|+.+.+..+ ++ .+.+..|.+...|+.+.+..+ +...-...|..+.+|+.+.+..+.++..-...|.++.+|+.+.+
T Consensus       241 ~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          241 ALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             SCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             cceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            4555555543 33 333344555555555555432 22122234555555555555555554233344555555555555


Q ss_pred             c
Q 035742          128 Q  128 (214)
Q Consensus       128 ~  128 (214)
                      .
T Consensus       318 p  318 (379)
T 4h09_A          318 P  318 (379)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=94.96  E-value=0.0057  Score=45.30  Aligned_cols=71  Identities=8%  Similarity=-0.001  Sum_probs=50.2

Q ss_pred             ccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccc-cccCCCcccccc----ccchhhhccccc-ce
Q 035742           62 TLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQ-LSGKIPLEVGLL----THLKVLHFQFNQ-LK  133 (214)
Q Consensus        62 ~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~l----~~L~~L~l~~N~-l~  133 (214)
                      .+| .....-..|+.||++++.++..--..+..+++|+.|+|+++. ++..--..+..+    ++|++|+|+++. ++
T Consensus        52 ~LP-~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           52 HLP-TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             GSC-CCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             cCC-cccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            345 333333579999999999876555667899999999999985 553322334443    379999999874 54

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=94.43  E-value=0.039  Score=44.46  Aligned_cols=31  Identities=10%  Similarity=0.384  Sum_probs=24.2

Q ss_pred             hHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          180 VQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       180 ~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      .+..+.+++.   .|...+|.+||+|.+|+++|+
T Consensus       266 ~~~~l~~li~---~cl~~dP~~RPs~~ei~~~Le  296 (307)
T 3omv_A          266 CPKAMKRLVA---DCVKKVKEERPLFPQILSSIE  296 (307)
T ss_dssp             SCHHHHHHHH---HHTCSSSTTSCCHHHHHHHHH
T ss_pred             chHHHHHHHH---HHcCCCHhHCcCHHHHHHHHH
Confidence            3355555554   499999999999999998875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.42  E-value=0.041  Score=45.54  Aligned_cols=82  Identities=12%  Similarity=0.182  Sum_probs=63.7

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      ..|+.+.+. +.++ .+++..|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++..-..+|.++++|+.++
T Consensus       288 ~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~  363 (394)
T 4gt6_A          288 PALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE  363 (394)
T ss_dssp             TTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred             cccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence            468888886 4566 677688999999999999865 55344567899999999999755 5534456899999999999


Q ss_pred             cccccc
Q 035742          127 FQFNQL  132 (214)
Q Consensus       127 l~~N~l  132 (214)
                      +.+|..
T Consensus       364 ~~~~~~  369 (394)
T 4gt6_A          364 YSGSRS  369 (394)
T ss_dssp             ESSCHH
T ss_pred             ECCcee
Confidence            988754

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=94.36  E-value=0.04  Score=44.38  Aligned_cols=30  Identities=27%  Similarity=0.592  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          181 QEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       181 ~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +..+.+++   ..|...+|.+||+|++|+++|+
T Consensus       273 ~~~~~~li---~~C~~~dP~~RPs~~ei~~~L~  302 (308)
T 4gt4_A          273 PAWVYALM---IECWNEFPSRRPRFKDIHSRLR  302 (308)
T ss_dssp             CHHHHHHH---HHHTCSSGGGSCCHHHHHHHHH
T ss_pred             hHHHHHHH---HHHcCCChhHCcCHHHHHHHHH
Confidence            34445444   4599999999999999999986

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=93.58  E-value=0.077  Score=43.08  Aligned_cols=29  Identities=28%  Similarity=0.544  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++.   .|...+|.+||+|.+|+++|+
T Consensus       287 ~~~~~li~---~cl~~dP~~RPs~~ei~~~L~  315 (329)
T 4aoj_A          287 PEVYAIMR---GCWQREPQQRHSIKDVHARLQ  315 (329)
T ss_dssp             HHHHHHHH---HHCCSSTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHH---HHcCcChhHCcCHHHHHHHHH
Confidence            44444444   499999999999999999986

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.22  E-value=0.057  Score=44.66  Aligned_cols=74  Identities=15%  Similarity=0.220  Sum_probs=55.9

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      .+|+.+++..+ ++ .+++..|.++.+|+.+++..+ +...-..+|.++.+|+.+.+..+ +. .+...|.++++|+.+
T Consensus       320 ~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          320 TSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            47899988754 66 676588999999999999877 65445667999999999999765 33 334567777777643

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=93.13  E-value=0.071  Score=42.67  Aligned_cols=29  Identities=21%  Similarity=0.428  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++.   .|...+|.+||+|++|+++|+
T Consensus       257 ~~~~~li~---~cl~~dP~~RPs~~~i~~~L~  285 (299)
T 4asz_A          257 QEVYELML---GCWQREPHMRKNIKGIHTLLQ  285 (299)
T ss_dssp             HHHHHHHH---HHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHH---HHcCCChhHCcCHHHHHHHHH
Confidence            44454444   499999999999999999886

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.96  E-value=0.11  Score=42.45  Aligned_cols=80  Identities=13%  Similarity=0.118  Sum_probs=47.1

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +++.+.+..+ ++ .++...|.++.+|+.+.+.++.+...-...|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+
T Consensus       264 ~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          264 ALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             hhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            4555655433 44 444356667777777777666665344455667777777776543 44233445666677776666


Q ss_pred             ccc
Q 035742          128 QFN  130 (214)
Q Consensus       128 ~~N  130 (214)
                      ..+
T Consensus       341 p~~  343 (379)
T 4h09_A          341 PKS  343 (379)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.47  E-value=0.05  Score=40.94  Aligned_cols=68  Identities=15%  Similarity=0.097  Sum_probs=50.1

Q ss_pred             ccCCCCCCcEEeCcCC-cCcC----CChhhhhCCcccceeeccccccccC----CCccccccccchhhhccccccee
Q 035742           67 SFSSFPQLVHLDLSLN-GFLG----TIPSQIGNLSKLSYISLQSNQLSGK----IPLEVGLLTHLKVLHFQFNQLKL  134 (214)
Q Consensus        67 ~~~~l~~L~~L~l~~n-~l~~----~~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~L~l~~N~l~g  134 (214)
                      .+.+-+.|+.|+|++| .|..    .+-..+..-+.|+.|+|++|.|...    +-..+..-+.|+.|+|+.|.|..
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            3455688999999985 7752    2344566668899999999999732    22334455789999999999873

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=91.39  E-value=0.12  Score=41.25  Aligned_cols=46  Identities=22%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             hhcCCCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          167 EMLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       167 ~~l~~~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+++.+|..... .+....+..+...|...+|.+||+|.+|+++|+
T Consensus       248 ~~~rp~~p~~~~~-~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~  293 (303)
T 3hmm_A          248 QKLRPNIPNRWQS-CEALRVMAKIMRECWYANGAARLTALRIKKTLS  293 (303)
T ss_dssp             SCCCCCCCGGGGS-SHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHH
T ss_pred             ccCCCCCCccccc-hHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHH
Confidence            3445556654332 122334455666799999999999999999986

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=89.97  E-value=0.42  Score=37.51  Aligned_cols=44  Identities=27%  Similarity=0.509  Sum_probs=30.2

Q ss_pred             hhcCCCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          167 EMLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       167 ~~l~~~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..++..++.........+.+++   ..|+..+|.+||++.+|+++|+
T Consensus       259 ~~~~~~~~~~~~~~~~~l~~li---~~cl~~~p~~Rps~~~l~~~L~  302 (307)
T 2nru_A          259 DYIDKKMNDADSTSVEAMYSVA---SQCLHEKKNKRPDIKKVQQLLQ  302 (307)
T ss_dssp             HHSCSSCSCCCHHHHHHHHHHH---HHHTCSSTTTSCCHHHHHHHHH
T ss_pred             hhccccccccchHHHHHHHHHH---HHHcCCCcccCcCHHHHHHHHH
Confidence            3444455444444444444444   4499999999999999999986

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=89.32  E-value=0.3  Score=39.98  Aligned_cols=38  Identities=24%  Similarity=0.444  Sum_probs=27.1

Q ss_pred             CCCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          170 DPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       170 ~~~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ....|....   ..+.+++.   .|...+|.+||++.+|++.|+
T Consensus       306 ~~~~p~~~~---~~~~~li~---~c~~~dP~~RPt~~eil~~L~  343 (353)
T 4ase_A          306 RMRAPDYTT---PEMYQTML---DCWHGEPSQRPTFSELVEHLG  343 (353)
T ss_dssp             CCCCCTTCC---HHHHHHHH---HHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCCCCccCC---HHHHHHHH---HHcCcChhHCcCHHHHHHHHH
Confidence            344555443   34444444   599999999999999999875

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=89.12  E-value=0.35  Score=38.34  Aligned_cols=30  Identities=33%  Similarity=0.636  Sum_probs=25.1

Q ss_pred             HHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          184 LISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       184 L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ...+..+...|+..+|.+||++.+|+++|+
T Consensus       278 ~~~l~~li~~cl~~dP~~Rps~~ell~~L~  307 (326)
T 3uim_A          278 VEQLIQVALLCTQSSPMERPKMSEVVRMLE  307 (326)
T ss_dssp             HHHHHHHHHHHTCSCGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCCccCCCHHHHHHHhc
Confidence            345556666699999999999999999996

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=87.96  E-value=0.58  Score=35.87  Aligned_cols=30  Identities=33%  Similarity=0.600  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      ..+.+++..   |...+|.+||++.+|+++|+.
T Consensus       241 ~~~~~li~~---~l~~~p~~Rps~~e~l~~L~~  270 (271)
T 3dtc_A          241 EPFAKLMED---CWNPDPHSRPSFTNILDQLTT  270 (271)
T ss_dssp             HHHHHHHHH---HTCSSGGGSCCHHHHHHHHHC
T ss_pred             HHHHHHHHH---HhcCCcccCcCHHHHHHHHhc
Confidence            444555554   999999999999999999873

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=86.79  E-value=0.64  Score=35.47  Aligned_cols=29  Identities=28%  Similarity=0.682  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |+..+|.+||++.+|+++|+
T Consensus       238 ~~~~~li~~---~l~~~p~~Rps~~~il~~L~  266 (271)
T 3kmu_A          238 PHVSKLMKI---CMNEDPAKRPKFDMIVPILE  266 (271)
T ss_dssp             HHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HcCCChhhCcCHHHHHHHHH
Confidence            444555554   99999999999999999986

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=86.28  E-value=0.72  Score=36.37  Aligned_cols=31  Identities=23%  Similarity=0.569  Sum_probs=24.4

Q ss_pred             hHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          180 VQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       180 ~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      .+..+.+++..   |...+|.+||++.+|+++|+
T Consensus       229 ~~~~l~~li~~---~l~~dp~~Rps~~ell~~L~  259 (307)
T 2eva_A          229 LPKPIESLMTR---CWSKDPSQRPSMEEIVKIMT  259 (307)
T ss_dssp             CCHHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             cCHHHHHHHHH---HhcCChhhCcCHHHHHHHHH
Confidence            34555555554   99999999999999999875

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=86.10  E-value=0.55  Score=36.59  Aligned_cols=30  Identities=17%  Similarity=0.511  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          181 QEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       181 ~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +..+.+++..   |+..+|.+||++.+|+++|+
T Consensus       255 ~~~l~~li~~---~l~~~p~~Rps~~ell~~L~  284 (289)
T 3og7_A          255 PKRMKRLMAE---CLKKKRDERPSFPRILAEIE  284 (289)
T ss_dssp             CHHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             CHHHHHHHHH---HccCChhhCCCHHHHHHHHH
Confidence            3555555555   99999999999999999986

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=86.02  E-value=1.2  Score=34.65  Aligned_cols=29  Identities=21%  Similarity=0.484  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |...+|.+||++.+|+++|+
T Consensus       247 ~~l~~li~~---~l~~dp~~Rps~~~l~~~L~  275 (291)
T 1xbb_A          247 REMYDLMNL---CWTYDVENRPGFAAVELRLR  275 (291)
T ss_dssp             HHHHHHHHH---HTCSSTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HcCCChhhCcCHHHHHHHHH
Confidence            445555555   99999999999999999986

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=84.06  E-value=0.88  Score=35.97  Aligned_cols=28  Identities=32%  Similarity=0.431  Sum_probs=23.3

Q ss_pred             HHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          186 SIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       186 ~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      .+..+...|+..+|.+||++.+|+++|+
T Consensus       284 ~l~~li~~~l~~dP~~Rps~~ell~~L~  311 (321)
T 2qkw_B          284 KFGDTAVKCLALSSEDRPSMGDVLWKLE  311 (321)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence            4445555699999999999999999886

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=83.81  E-value=1.1  Score=35.64  Aligned_cols=29  Identities=21%  Similarity=0.398  Sum_probs=23.3

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |+..+|.+||++.+|+++|+
T Consensus       281 ~~l~~li~~---~l~~dp~~Rps~~eil~~L~  309 (325)
T 3kul_A          281 HALHQLMLD---CWHKDRAQRPRFSQIVSVLD  309 (325)
T ss_dssp             HHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HccCChhhCcCHHHHHHHHH
Confidence            444444444   99999999999999999986

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=83.78  E-value=1.4  Score=33.61  Aligned_cols=29  Identities=31%  Similarity=0.591  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |...+|.+||++.+|++.|+
T Consensus       232 ~~l~~li~~---~l~~~p~~Rps~~~ll~~L~  260 (268)
T 3sxs_A          232 DTIYQIMYS---CWHELPEKRPTFQQLLSSIE  260 (268)
T ss_dssp             HHHHHHHHH---TTCSSGGGSCCHHHHHHHHG
T ss_pred             HHHHHHHHH---HcCCChhhCcCHHHHHHHHH
Confidence            444455544   99999999999999999986

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=83.78  E-value=1.2  Score=34.58  Aligned_cols=29  Identities=17%  Similarity=0.421  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |+..+|.+||++.+++++|+
T Consensus       259 ~~l~~li~~---~l~~~p~~Rps~~ell~~L~  287 (298)
T 3f66_A          259 DPLYEVMLK---CWHPKAEMRPSFSELVSRIS  287 (298)
T ss_dssp             HHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HcCCChhhCcCHHHHHHHHH
Confidence            445555554   99999999999999999986

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=83.68  E-value=1.1  Score=35.49  Aligned_cols=29  Identities=28%  Similarity=0.612  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |...+|.+||++.+|+++|+
T Consensus       303 ~~l~~li~~---~l~~~p~~Rps~~~~~~~L~  331 (343)
T 1luf_A          303 LELYNLMRL---CWSKLPADRPSFCSIHRILQ  331 (343)
T ss_dssp             HHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HcccCcccCCCHHHHHHHHH
Confidence            445555554   99999999999999999986

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=83.22  E-value=1.5  Score=33.62  Aligned_cols=29  Identities=21%  Similarity=0.446  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |...+|.+||++.+++++|+
T Consensus       241 ~~l~~li~~---~l~~~p~~Rps~~~l~~~L~  269 (278)
T 1byg_A          241 PAVYEVMKN---CWHLDAAMRPSFLQLREQLE  269 (278)
T ss_dssp             HHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HhcCChhhCCCHHHHHHHHH
Confidence            455555554   99999999999999999986

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=82.97  E-value=1  Score=36.06  Aligned_cols=29  Identities=24%  Similarity=0.495  Sum_probs=23.2

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++.   .|+..+|.+||++.+|+++|+
T Consensus       323 ~~l~~li~---~~l~~dP~~Rps~~ell~~L~  351 (359)
T 3vhe_A          323 PEMYQTML---DCWHGEPSQRPTFSELVEHLG  351 (359)
T ss_dssp             HHHHHHHH---HHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHH---HHccCChhhCCCHHHHHHHHH
Confidence            34444444   499999999999999999986

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=82.88  E-value=0.63  Score=36.24  Aligned_cols=26  Identities=19%  Similarity=0.339  Sum_probs=21.9

Q ss_pred             HHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          188 MGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       188 ~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+-..|...+|.+||++.+|+++|+
T Consensus       273 ~~li~~cl~~dP~~Rps~~~i~~~L~  298 (301)
T 3q4u_A          273 AKLMKECWYQNPSARLTALRIKKTLT  298 (301)
T ss_dssp             HHHHHHHCCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHhhcChhhCCCHHHHHHHHh
Confidence            34444599999999999999999986

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=82.75  E-value=1.2  Score=35.08  Aligned_cols=29  Identities=24%  Similarity=0.543  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |...+|.+||++.+|+++|+
T Consensus       266 ~~l~~li~~---~l~~dP~~Rps~~~ll~~L~  294 (309)
T 3p86_A          266 PQVAAIIEG---CWTNEPWKRPSFATIMDLLR  294 (309)
T ss_dssp             HHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HccCChhhCcCHHHHHHHHH
Confidence            444555554   99999999999999999886

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=82.36  E-value=1.5  Score=34.00  Aligned_cols=29  Identities=24%  Similarity=0.610  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |+..+|.+||++.+++++|+
T Consensus       255 ~~l~~li~~---~l~~~p~~Rps~~~ll~~l~  283 (298)
T 3pls_A          255 DSLYQVMQQ---CWEADPAVRPTFRVLVGEVE  283 (298)
T ss_dssp             HHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HccCChhhCcCHHHHHHHHH
Confidence            445555554   99999999999999999986

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=82.31  E-value=1.7  Score=34.24  Aligned_cols=29  Identities=24%  Similarity=0.566  Sum_probs=23.3

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |+..+|.+||++.+++++|+
T Consensus       266 ~~l~~li~~---~l~~dp~~Rps~~~l~~~l~  294 (323)
T 3qup_A          266 EEVYDLMYQ---CWSADPKQRPSFTCLRMELE  294 (323)
T ss_dssp             HHHHHHHHH---TTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HccCChhhCcCHHHHHHHHH
Confidence            444555544   99999999999999999886

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=82.19  E-value=1.7  Score=34.00  Aligned_cols=29  Identities=34%  Similarity=0.657  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |+..+|.+||++.+++++|+
T Consensus       276 ~~l~~li~~---~l~~dp~~Rps~~~l~~~L~  304 (313)
T 3brb_A          276 DELYEIMYS---CWRTDPLDRPTFSVLRLQLE  304 (313)
T ss_dssp             HHHHHHHHH---TTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HcCCChhhCcCHHHHHHHHH
Confidence            445555554   99999999999999999986

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=82.09  E-value=1.6  Score=33.73  Aligned_cols=29  Identities=28%  Similarity=0.410  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |...+|.+||++.+|++.|+
T Consensus       240 ~~l~~li~~---~l~~~p~~Rps~~~l~~~l~  268 (287)
T 1u59_A          240 PELYALMSD---CWIYKWEDRPDFLTVEQRMR  268 (287)
T ss_dssp             HHHHHHHHH---TTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HcCCChhhCcCHHHHHHHHH
Confidence            455555554   99999999999999999885

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=81.98  E-value=1.5  Score=33.46  Aligned_cols=29  Identities=31%  Similarity=0.591  Sum_probs=23.2

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |...+|.+||++.+++++|+
T Consensus       234 ~~~~~li~~---~l~~~p~~Rps~~~ll~~l~  262 (269)
T 4hcu_A          234 THVYQIMNH---CWRERPEDRPAFSRLLRQLA  262 (269)
T ss_dssp             HHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HccCCcccCcCHHHHHHHHH
Confidence            444444444   99999999999999999986

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=81.57  E-value=1  Score=35.04  Aligned_cols=29  Identities=21%  Similarity=0.517  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |...+|.+||++.+|+++|+
T Consensus       259 ~~l~~li~~---~l~~dp~~Rps~~el~~~L~  287 (295)
T 3ugc_A          259 DEIYMIMTE---CWNNNVNQRPSFRDLALRVD  287 (295)
T ss_dssp             HHHHHHHHH---HSCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HcCCChhhCCCHHHHHHHHH
Confidence            445555554   99999999999999999986

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=80.58  E-value=1.2  Score=34.35  Aligned_cols=30  Identities=20%  Similarity=0.527  Sum_probs=24.2

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      ..+.+++..   |...+|.+||++.+|+++|+.
T Consensus       257 ~~l~~li~~---~l~~dp~~Rps~~~ll~~L~~  286 (287)
T 4f0f_A          257 PRLRNVIEL---CWSGDPKKRPHFSYIVKELSE  286 (287)
T ss_dssp             HHHHHHHHH---HTCSSGGGSCCHHHHHHHHHT
T ss_pred             HHHHHHHHH---HhcCChhhCcCHHHHHHHHHh
Confidence            444555555   999999999999999999873

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=80.39  E-value=1.9  Score=33.09  Aligned_cols=29  Identities=34%  Similarity=0.676  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |+..+|.+||++.+++++|+
T Consensus       237 ~~l~~li~~---~l~~~p~~Rps~~~l~~~l~  265 (279)
T 1qpc_A          237 EELYQLMRL---CWKERPEDRPTFDYLRSVLE  265 (279)
T ss_dssp             HHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HhccChhhCCCHHHHHHHHH
Confidence            444555544   99999999999999999885

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=80.36  E-value=2.1  Score=33.97  Aligned_cols=25  Identities=16%  Similarity=0.292  Sum_probs=21.1

Q ss_pred             HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          189 GVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       189 ~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      .+...|...+|.+||+|.+|+++|+
T Consensus       250 ~li~~~l~~~p~~Rps~~ell~~l~  274 (327)
T 3poz_A          250 MIMVKCWMIDADSRPKFRELIIEFS  274 (327)
T ss_dssp             HHHHHHTCSCGGGSCCHHHHHHHHH
T ss_pred             HHHHHHcCCChhhCCCHHHHHHHHH
Confidence            3444599999999999999999875

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=80.27  E-value=2.1  Score=33.41  Aligned_cols=29  Identities=28%  Similarity=0.613  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |+..+|.+||++.+|+++|+
T Consensus       279 ~~~~~li~~---~l~~dp~~Rps~~~l~~~l~  307 (314)
T 2ivs_A          279 EEMYRLMLQ---CWKQEPDKRPVFADISKDLE  307 (314)
T ss_dssp             HHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HccCChhhCcCHHHHHHHHH
Confidence            445555544   99999999999999999886

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=80.25  E-value=1.2  Score=35.35  Aligned_cols=29  Identities=17%  Similarity=0.313  Sum_probs=23.3

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++.   .|+..+|.+||++++|+++|+
T Consensus       286 ~~l~~li~---~cl~~dP~~Rps~~e~l~~L~  314 (336)
T 3g2f_A          286 RSLKETIE---DCWDQDAEARLTAQXAEERMA  314 (336)
T ss_dssp             HHHHHHHH---HHSCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHH---HHhcCChhhCcchHHHHHHHH
Confidence            34444444   499999999999999999886

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=80.23  E-value=1.2  Score=34.73  Aligned_cols=29  Identities=28%  Similarity=0.685  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |+..+|.+||++.+|+++|+
T Consensus       275 ~~l~~li~~---~l~~dp~~Rps~~ell~~L~  303 (313)
T 1t46_A          275 AEMYDIMKT---CWDADPLKRPTFKQIVQLIE  303 (313)
T ss_dssp             HHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HcCCCchhCcCHHHHHHHHH
Confidence            444455444   99999999999999999986

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=80.14  E-value=1.1  Score=35.61  Aligned_cols=27  Identities=11%  Similarity=0.258  Sum_probs=22.4

Q ss_pred             HHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          187 IMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       187 l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +..+-..|...+|.+||++.+|+++|+
T Consensus       288 l~~li~~cl~~dP~~Rps~~ell~~L~  314 (322)
T 3soc_A          288 LCETIEECWDHDAEARLSAGCVGERIT  314 (322)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHccCChhhCcCHHHHHHHHH
Confidence            344444599999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-04
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.7 bits (135), Expect = 2e-10
 Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 12/136 (8%)

Query: 1   ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPCAWFGISCSDAG---RVINISLRNT 57
             ALL+ K  L   N + L SW       ++  C   W G+ C       RV N+ L   
Sbjct: 8   KQALLQIKKDL--GNPTTLSSWLP-----TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 58  GLSGTLS-DFSFSSFPQLVHLDLSLNGFL-GTIPSQIGNLSKLSYISLQSNQLSGKIPLE 115
            L        S ++ P L  L +     L G IP  I  L++L Y+ +    +SG IP  
Sbjct: 61  NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120

Query: 116 VGLLTHLKVLHFQFNQ 131
           +  +  L  L F +N 
Sbjct: 121 LSQIKTLVTLDFSYNA 136

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.0 bits (128), Expect = 2e-09
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 71  FPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFN 130
              L  LDL  N   GT+P  +  L  L  +++  N L G+IP + G L    V  +  N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

Query: 131 QL 132
           + 
Sbjct: 302 KC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 2e-07
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 34  CPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIG 93
              A+       +  +  + LRN  + GTL     +    L  L++S N   G IP   G
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQ-GG 288

Query: 94  NLSKLSYISLQSNQLSGKIPL 114
           NL +    +  +N+     PL
Sbjct: 289 NLQRFDVSAYANNKCLCGSPL 309

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 5e-08
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 7/114 (6%)

Query: 17  SLLPSWTNATTNVSSKICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVH 76
           ++ P                       S+   +  ++L    +S        SS  +L  
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQR 333

Query: 77  LDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFN 130
           L  + N    +  S + NL+ ++++S   NQ+S   PL    LT +  L     
Sbjct: 334 LFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 71  FPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFN 130
              L +L L  N      P  + +L+KL  +   +N++S      +  LT++  L    N
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 131 QLK 133
           Q+ 
Sbjct: 362 QIS 364

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 49  VINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQL 108
            +   L  T ++ T+S    +   Q+  L     G + +I   +  L+ L+ I+  +NQL
Sbjct: 24  KMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNNQL 78

Query: 109 SGKIPLEVGLLTHLKVLHFQFNQ 131
           +   PL    LT L  +    NQ
Sbjct: 79  TDITPL--KNLTKLVDILMNNNQ 99

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.5 bits (101), Expect = 7e-06
 Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 11/109 (10%)

Query: 34  CPCAWFGISCSDAG----------RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNG 83
           C C    + CSD G              + L+N  ++  + D  F +   L  L L  N 
Sbjct: 8   CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNK 66

Query: 84  FLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQL 132
                P     L KL  + L  NQL          L  L+V   +  ++
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 115

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 5e-05
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 60  SGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLL 119
           S           P L  L++S N  L  +P+    L +L       N L+ ++P    L 
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPRLERLI---ASFNHLA-EVP---ELP 323

Query: 120 THLKVLHFQFNQLK 133
            +LK LH ++N L+
Sbjct: 324 QNLKQLHVEYNPLR 337

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 16/91 (17%)

Query: 136 VLVLEVIKGKHP-----------RDFLCSILSSSLTKDVALDEMLDPRLP--TSSCSVQE 182
           ++  E+ +                D + S  S    + V  ++ L P +P    SC    
Sbjct: 206 LVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALR 265

Query: 183 KLISIMGVAFPCLNESPVSRPTMQTVSQQLQ 213
            +  IM     C   +  +R T   + + L 
Sbjct: 266 VMAKIM---RECWYANGAARLTALRIKKTLS 293

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 136 VLVLEVIKGKHPRDFLCSILSSSLTKDVALDEMLDPRLPTSSCSVQEKLISIMGVAFPCL 195
           +++ E++ G+ P     +I +      +     L P L     +  + +  +M     CL
Sbjct: 197 IVLYELMTGQLPYS---NINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAE---CL 250

Query: 196 NESPVSRPTMQTVSQQLQ 213
            +    RP    +   ++
Sbjct: 251 KKKRDERPLFPQILASIE 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 52  ISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLG-TIPSQIGNLSKLSYISLQSNQLSG 110
           I+ R              S  ++ H+DLS +     T+   +   SKL  +SL+  +LS 
Sbjct: 26  IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD 85

Query: 111 KIPLEVGLLTHLKVLHFQFNQ 131
            I   +   ++L  L+     
Sbjct: 86  PIVNTLAKNSNLVRLNLSGCS 106

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 13/97 (13%), Positives = 25/97 (25%), Gaps = 5/97 (5%)

Query: 32  KICPCAWFGISCSDAGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQ 91
                A           + +  L   G +  +  FS      L  L L  N         
Sbjct: 233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 292

Query: 92  I-----GNLSKLSYISLQSNQLSGKIPLEVGLLTHLK 123
           +       +  L ++ L  N+ S +  +   +     
Sbjct: 293 LKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 329

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.89
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.33
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.32
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.29
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.17
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.16
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.09
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.07
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.06
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.03
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.01
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.94
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.77
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.67
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.67
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.61
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.6
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.59
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.47
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.31
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.09
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.07
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.94
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.93
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.77
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.55
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.27
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.26
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.98
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.96
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	95.07
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	94.45
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.14
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	93.85
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	93.74
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	93.53
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	93.43
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	92.9
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	92.79
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.75
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	92.65
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	92.54
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	92.53
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	92.29
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	91.36
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	91.15
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	91.1
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	89.65
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	89.38
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	89.27
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	88.85
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	87.9
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	86.89
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	85.88
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	85.57

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.89  E-value=4.5e-24  Score=172.58  Aligned_cols=128  Identities=31%  Similarity=0.545  Sum_probs=113.0

Q ss_pred             ChhhhhhhhcccCCCCCCCCCCcCCCCCCCCCCcCc--ccceeeeCCC---CCeEEEEecCCCCcc--ccCccccCCCCC
Q 035742            1 ADALLKWKASLQSHNRSLLPSWTNATTNVSSKICPC--AWFGISCSDA---GRVINISLRNTGLSG--TLSDFSFSSFPQ   73 (214)
Q Consensus         1 ~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c--~w~gv~c~~~---~~L~~L~L~~n~l~g--~~p~~~~~~l~~   73 (214)
                      |+||++||+++.++  ..+++| ..++|      +|  .|.||+|+..   .+|+.|+|++|+++|  .+| ..++++++
T Consensus         8 ~~aLl~~k~~~~~~--~~l~sW-~~~~d------~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp-~~l~~L~~   77 (313)
T d1ogqa_           8 KQALLQIKKDLGNP--TTLSSW-LPTTD------CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPY   77 (313)
T ss_dssp             HHHHHHHHHHTTCC--GGGTTC-CTTSC------TTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GGGGGCTT
T ss_pred             HHHHHHHHHHCCCC--CcCCCC-CCCCC------CCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCC-hHHhcCcc
Confidence            58999999999874  468999 56677      88  5999999853   379999999999998  578 89999999


Q ss_pred             CcEEeCcC-CcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742           74 LVHLDLSL-NGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus        74 L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~  138 (214)
                      |++|++++ |+++|.+|..|+++++|++|++++|++.+..+..+..+..|+.+++++|++.+.+|.
T Consensus        78 L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~  143 (313)
T d1ogqa_          78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP  143 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCch
Confidence            99999996 899999999999999999999999999988888888888888888888888877764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=6.2e-17  Score=121.63  Aligned_cols=109  Identities=23%  Similarity=0.319  Sum_probs=98.0

Q ss_pred             CCCCcCcccceeeeCCC----------CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccc
Q 035742           30 SSKICPCAWFGISCSDA----------GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLS   99 (214)
Q Consensus        30 ~~~~~~c~w~gv~c~~~----------~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~   99 (214)
                      |-..|.|.|..|.|+..          .+++.|+|++|.|++.++...|.++++|+.|++++|.+.+..+..+..+++|+
T Consensus         2 CP~~C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~   81 (192)
T d1w8aa_           2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             CCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             cCCCCEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccc
Confidence            55679999999999842          37899999999998766547789999999999999999988889999999999


Q ss_pred             eeeccccccccCCCccccccccchhhhcccccceeecch
Q 035742          100 YISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVLV  138 (214)
Q Consensus       100 ~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p~  138 (214)
                      +|++++|+|+...|..|.++++|++|+|++|+|++..|.
T Consensus        82 ~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~  120 (192)
T d1w8aa_          82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             eeeeccccccccCHHHHhCCCcccccccCCccccccCHH
Confidence            999999999977788899999999999999999998775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.3e-13  Score=97.76  Aligned_cols=100  Identities=20%  Similarity=0.242  Sum_probs=78.2

Q ss_pred             CCcCcc-cceeeeCC------------CCCeEEEEecCCC-CccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcc
Q 035742           32 KICPCA-WFGISCSD------------AGRVINISLRNTG-LSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSK   97 (214)
Q Consensus        32 ~~~~c~-w~gv~c~~------------~~~L~~L~L~~n~-l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~   97 (214)
                      ..|.|. +++++|..            ..++++|++.+|+ |+ .++...|.++++|+.|++++|+|+...+..|..+++
T Consensus         3 ~~C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~   81 (156)
T d2ifga3           3 DACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR   81 (156)
T ss_dssp             SSSCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred             CCCCcCCCCeEEecCCCCccCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCccccccccccc
Confidence            345554 67788873            2378899997664 77 565477999999999999999998766778999999


Q ss_pred             cceeeccccccccCCCccccccccchhhhcccccce
Q 035742           98 LSYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLK  133 (214)
Q Consensus        98 L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~  133 (214)
                      |++|+|++|+|+ .+|.......+|+.|+|++|.+.
T Consensus        82 L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          82 LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            999999999998 66665444457999999999885

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=9.5e-13  Score=91.65  Aligned_cols=81  Identities=23%  Similarity=0.258  Sum_probs=43.8

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCC--ccccccccchhh
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIP--LEVGLLTHLKVL  125 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~~L~~L  125 (214)
                      +|++|++++|.|+ .+| +.|..+++|+.|++++|.++ .+| .+..+++|+.+++++|+++ .+|  ..+..+++|++|
T Consensus        21 ~L~~L~ls~N~l~-~lp-~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          21 LVTHLDLSHNRLR-ALP-PALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             TCCEEECCSSCCC-CCC-GGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEE
T ss_pred             CCCEEECCCCccC-cch-hhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccC-CCCCchhhcCCCCCCEE
Confidence            4555555555555 455 45555555555555555555 233 3555555555555555555 222  234555555555


Q ss_pred             hcccccce
Q 035742          126 HFQFNQLK  133 (214)
Q Consensus       126 ~l~~N~l~  133 (214)
                      ++++|+++
T Consensus        96 ~l~~N~i~  103 (124)
T d1dcea3          96 NLQGNSLC  103 (124)
T ss_dssp             ECTTSGGG
T ss_pred             ECCCCcCC
Confidence            55555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=8.1e-13  Score=91.99  Aligned_cols=81  Identities=25%  Similarity=0.339  Sum_probs=72.7

Q ss_pred             EEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhccc
Q 035742           50 INISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQF  129 (214)
Q Consensus        50 ~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~  129 (214)
                      +.|+|++|+|+ .++  .+..+++|++|++++|.++ .+|+.++.+++|+.|++++|.|+ .+| .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~--~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc--ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence            47999999998 666  5899999999999999998 78888999999999999999999 565 489999999999999


Q ss_pred             ccceeec
Q 035742          130 NQLKLLV  136 (214)
Q Consensus       130 N~l~g~~  136 (214)
                      |+++...
T Consensus        75 N~i~~~~   81 (124)
T d1dcea3          75 NRLQQSA   81 (124)
T ss_dssp             SCCCSSS
T ss_pred             CccCCCC
Confidence            9998643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=6.8e-13  Score=99.08  Aligned_cols=91  Identities=20%  Similarity=0.242  Sum_probs=82.5

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|+|++|.+.+..+ ..|..+++|++|++++|++....|..|.++++|++|+|++|+|++..|..|..+++|++|
T Consensus        53 l~~L~~L~L~~N~i~~~~~-~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l  131 (192)
T d1w8aa_          53 LPHLVKLELKRNQLTGIEP-NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             CceEeeeeccccccccccc-cccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccc
Confidence            4589999999999996666 899999999999999999997777789999999999999999997778889999999999


Q ss_pred             hcccccceeecc
Q 035742          126 HFQFNQLKLLVL  137 (214)
Q Consensus       126 ~l~~N~l~g~~p  137 (214)
                      +|++|.+.....
T Consensus       132 ~L~~N~~~~~~~  143 (192)
T d1w8aa_         132 NLASNPFNCNCH  143 (192)
T ss_dssp             ECTTCCBCCSGG
T ss_pred             cccccccccccc
Confidence            999999986544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.29  E-value=7.2e-13  Score=105.90  Aligned_cols=92  Identities=20%  Similarity=0.289  Sum_probs=85.5

Q ss_pred             CCCeEEEEecC-CCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchh
Q 035742           46 AGRVINISLRN-TGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKV  124 (214)
Q Consensus        46 ~~~L~~L~L~~-n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~  124 (214)
                      ..+|++|+|++ |.++|.+| ..|.++++|++|++++|++.+..+..+..+.+|+.+++++|.+.+.+|..+++++.+++
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP-~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~  153 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             Cccccccccccccccccccc-cccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccce
Confidence            45899999997 89999999 99999999999999999999888888999999999999999999899999999999999


Q ss_pred             hhcccccceeecch
Q 035742          125 LHFQFNQLKLLVLV  138 (214)
Q Consensus       125 L~l~~N~l~g~~p~  138 (214)
                      +++++|.++|.+|.
T Consensus       154 l~l~~n~l~~~ip~  167 (313)
T d1ogqa_         154 ITFDGNRISGAIPD  167 (313)
T ss_dssp             EECCSSCCEEECCG
T ss_pred             eecccccccccccc
Confidence            99999999988875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.1e-11  Score=90.15  Aligned_cols=85  Identities=19%  Similarity=0.112  Sum_probs=68.5

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+++.|+|++|.|+ .++ ..+..+++|+.|++++|.++ .++ .+..+++|++|++++|+++...+..+..+++|+.|
T Consensus        17 ~~~lr~L~L~~n~I~-~i~-~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          17 AVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             TTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCcCcEEECCCCCCC-ccC-ccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            346889999999998 677 66778889999999999987 443 57888999999999999984444455678899999


Q ss_pred             hccccccee
Q 035742          126 HFQFNQLKL  134 (214)
Q Consensus       126 ~l~~N~l~g  134 (214)
                      ++++|+++.
T Consensus        93 ~L~~N~i~~  101 (162)
T d1a9na_          93 ILTNNSLVE  101 (162)
T ss_dssp             ECCSCCCCC
T ss_pred             eeccccccc
Confidence            999998875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.16  E-value=3.2e-11  Score=95.67  Aligned_cols=105  Identities=25%  Similarity=0.348  Sum_probs=87.7

Q ss_pred             CCCCCcCcccceeeeCC----------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCccc
Q 035742           29 VSSKICPCAWFGISCSD----------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKL   98 (214)
Q Consensus        29 ~~~~~~~c~w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L   98 (214)
                      +|=-.|.|.|.+|.|..          ..+++.|+|++|.|+ .+|+..|.++++|+.|++++|.+....|..|.++++|
T Consensus         3 ~~p~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L   81 (305)
T d1xkua_           3 VCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL   81 (305)
T ss_dssp             CCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCCCCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCcc
Confidence            45567899999999974          247899999999999 6663579999999999999999997778889999999


Q ss_pred             ceeeccccccccCCCccccccccchhhhcccccceeecc
Q 035742           99 SYISLQSNQLSGKIPLEVGLLTHLKVLHFQFNQLKLLVL  137 (214)
Q Consensus        99 ~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~p  137 (214)
                      +.|++++|+++ .+|..+  ...+..|++..|.+.+..+
T Consensus        82 ~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~  117 (305)
T d1xkua_          82 ERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRK  117 (305)
T ss_dssp             CEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCH
T ss_pred             CEecccCCccC-cCccch--hhhhhhhhccccchhhhhh
Confidence            99999999998 677543  3467788888888876544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.5e-11  Score=94.06  Aligned_cols=90  Identities=23%  Similarity=0.242  Sum_probs=57.3

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.+++++|.+++ +|...|..+++|+.|++++|++.+..+..|..+++|+.+++++|++++..|..|..+++|++|+
T Consensus       129 ~~L~~l~l~~N~l~~-i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         129 AALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccchhhhccccccc-cChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence            356666666666663 3325566666666666666666655555666666666666666666666666666666666666


Q ss_pred             cccccceeecc
Q 035742          127 FQFNQLKLLVL  137 (214)
Q Consensus       127 l~~N~l~g~~p  137 (214)
                      +++|.+++..+
T Consensus       208 l~~N~i~~~~~  218 (284)
T d1ozna_         208 LFANNLSALPT  218 (284)
T ss_dssp             CCSSCCSCCCH
T ss_pred             ccccccccccc
Confidence            66666665554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5e-11  Score=93.78  Aligned_cols=91  Identities=21%  Similarity=0.193  Sum_probs=82.7

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+++.|++++|.+++..+ ..|.++++|+.+++++|++++..|..|..+++|++|++++|++.+..|..|+.+.+|++|
T Consensus       152 ~~~L~~L~l~~N~l~~l~~-~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L  230 (284)
T d1ozna_         152 LGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL  230 (284)
T ss_dssp             CTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             ccchhhcccccCcccccch-hhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEE
Confidence            3579999999999995555 889999999999999999998889999999999999999999997777889999999999


Q ss_pred             hcccccceeecc
Q 035742          126 HFQFNQLKLLVL  137 (214)
Q Consensus       126 ~l~~N~l~g~~p  137 (214)
                      ++++|.+.+.-+
T Consensus       231 ~l~~N~l~C~C~  242 (284)
T d1ozna_         231 RLNDNPWVCDCR  242 (284)
T ss_dssp             ECCSSCEECSGG
T ss_pred             EecCCCCCCCcc
Confidence            999999987544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=6.1e-11  Score=86.04  Aligned_cols=86  Identities=17%  Similarity=0.142  Sum_probs=73.3

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCC--ccccccccch
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIP--LEVGLLTHLK  123 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~~L~  123 (214)
                      ..+|+.|+|++|.|+ .++  .|..+++|+.|++++|.++...+..+..+++|+.|++++|+++ .++  ..+..+++|+
T Consensus        40 l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~  115 (162)
T d1a9na_          40 LDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLT  115 (162)
T ss_dssp             TTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCC
T ss_pred             cccCCEEECCCCCCC-ccC--CcccCcchhhhhcccccccCCCccccccccccccceecccccc-ccccccccccccccc
Confidence            357999999999998 665  5899999999999999998555555678999999999999998 444  3678899999


Q ss_pred             hhhcccccceee
Q 035742          124 VLHFQFNQLKLL  135 (214)
Q Consensus       124 ~L~l~~N~l~g~  135 (214)
                      +|++++|.++..
T Consensus       116 ~L~l~~N~i~~~  127 (162)
T d1a9na_         116 YLCILRNPVTNK  127 (162)
T ss_dssp             EEECCSSGGGGS
T ss_pred             hhhcCCCccccc
Confidence            999999998643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.4e-10  Score=83.54  Aligned_cols=86  Identities=15%  Similarity=0.152  Sum_probs=74.9

Q ss_pred             EEEEecCCCCccccCccccCCCCCCcEEeCcCC-cCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcc
Q 035742           50 INISLRNTGLSGTLSDFSFSSFPQLVHLDLSLN-GFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQ  128 (214)
Q Consensus        50 ~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~  128 (214)
                      ..++.+++++. .+| ..+..+++|+.|++++| .++...+..|.++++|+.|++++|+|+...|..|..+++|++|+|+
T Consensus        11 ~~l~c~~~~~~-~~p-~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGAL-DSL-HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCC-TTT-TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCc-cCc-ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            45788999988 678 78999999999999866 5886666779999999999999999997778889999999999999


Q ss_pred             cccceeecc
Q 035742          129 FNQLKLLVL  137 (214)
Q Consensus       129 ~N~l~g~~p  137 (214)
                      +|+|+...+
T Consensus        89 ~N~l~~l~~   97 (156)
T d2ifga3          89 FNALESLSW   97 (156)
T ss_dssp             SSCCSCCCS
T ss_pred             CCCCcccCh
Confidence            999986544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.6e-10  Score=88.88  Aligned_cols=85  Identities=21%  Similarity=0.147  Sum_probs=44.8

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHF  127 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l  127 (214)
                      +|+.|++++|.+....+ ..+..+.+++.|++++|.+....+..+..+++|+.+++++|++++..+..|..+++|++|+|
T Consensus       101 ~L~~L~l~~~~~~~~~~-~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~L  179 (266)
T d1p9ag_         101 ALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL  179 (266)
T ss_dssp             TCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccceeec-cccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeec
Confidence            45555555555553223 44555555555555555555443444445555555555555555444444555555555555


Q ss_pred             ccccce
Q 035742          128 QFNQLK  133 (214)
Q Consensus       128 ~~N~l~  133 (214)
                      ++|+|+
T Consensus       180 s~N~L~  185 (266)
T d1p9ag_         180 QENSLY  185 (266)
T ss_dssp             CSSCCC
T ss_pred             ccCCCc
Confidence            555555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.00  E-value=1.9e-10  Score=91.03  Aligned_cols=88  Identities=18%  Similarity=0.272  Sum_probs=77.1

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+++.|++++|.+++..+ ..|..++.++.|++++|.+.+..+..+..+++|++|++++|+|+ .+|..|..+++|++|
T Consensus       170 ~~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L  247 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV  247 (305)
T ss_dssp             CTTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEE
T ss_pred             CCccCEEECCCCcCCCCCh-hHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEE
Confidence            3478899999998887777 88899999999999999998777888889999999999999998 778889999999999


Q ss_pred             hcccccceee
Q 035742          126 HFQFNQLKLL  135 (214)
Q Consensus       126 ~l~~N~l~g~  135 (214)
                      +|++|+++..
T Consensus       248 ~Ls~N~i~~i  257 (305)
T d1xkua_         248 YLHNNNISAI  257 (305)
T ss_dssp             ECCSSCCCCC
T ss_pred             ECCCCccCcc
Confidence            9999998853

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=7.3e-10  Score=86.23  Aligned_cols=107  Identities=20%  Similarity=0.169  Sum_probs=74.8

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|+|++|.++ .++ ..+..+++|+.|++++|.+....+..+..+.+++.+++++|.++...+..+..+++|+.+
T Consensus        76 l~~L~~L~Ls~N~l~-~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l  153 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQ-SLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (266)
T ss_dssp             CTTCCEEECCSSCCS-SCC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccccccccccccc-ccc-cccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhc
Confidence            356788888888877 455 677788888888888888776666667777888888888888875555566777788888


Q ss_pred             hcccccceeecch-hhhhcCCCCchhhhhh
Q 035742          126 HFQFNQLKLLVLV-LEVIKGKHPRDFLCSI  154 (214)
Q Consensus       126 ~l~~N~l~g~~p~-~~~l~g~~p~~~~~~~  154 (214)
                      ++++|++++..+. +..+....-.++..|.
T Consensus       154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         154 SLANNNLTELPAGLLNGLENLDTLLLQENS  183 (266)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccccccCccccccccccceeecccCC
Confidence            8888888776654 3444444344444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.5e-10  Score=86.50  Aligned_cols=105  Identities=27%  Similarity=0.367  Sum_probs=85.7

Q ss_pred             CCCcCcccceeeeCC----------CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCCh-hhhhCCcccc
Q 035742           31 SKICPCAWFGISCSD----------AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIP-SQIGNLSKLS   99 (214)
Q Consensus        31 ~~~~~c~w~gv~c~~----------~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~   99 (214)
                      +..|.|....|.|..          ..++++|++++|.|+ .+|...|.++++|++|++++|.+...++ ..|..++.++
T Consensus         3 ~~~C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~   81 (242)
T d1xwdc1           3 HRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH   81 (242)
T ss_dssp             CSSEEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCC
T ss_pred             CCcCCCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeeccccccccccc
Confidence            345788888899973          237999999999998 6663679999999999999999876554 4578899999


Q ss_pred             eeeccc-cccccCCCccccccccchhhhcccccceeec
Q 035742          100 YISLQS-NQLSGKIPLEVGLLTHLKVLHFQFNQLKLLV  136 (214)
Q Consensus       100 ~L~ls~-N~l~g~~p~~~~~l~~L~~L~l~~N~l~g~~  136 (214)
                      .+.+.. |.+....+..|.++++|+.+++++|.+....
T Consensus        82 ~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~  119 (242)
T d1xwdc1          82 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP  119 (242)
T ss_dssp             EEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCC
T ss_pred             cccccccccccccccccccccccccccccchhhhcccc
Confidence            998764 6777677788999999999999999887543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.77  E-value=3.1e-09  Score=85.95  Aligned_cols=89  Identities=22%  Similarity=0.325  Sum_probs=68.6

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      ..++.+.+..|.+++ +  ..+..+++++.|++++|++++. + .+..+++|+.|++++|+++ .++ .++++++|++|+
T Consensus       285 ~~l~~l~~~~n~l~~-~--~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~  357 (384)
T d2omza2         285 TALTNLELNENQLED-I--SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLS  357 (384)
T ss_dssp             TTCSEEECCSSCCSC-C--GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEE
T ss_pred             ccccccccccccccc-c--cccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEE
Confidence            457788888888874 3  4578888889999999988854 3 3788888999999999887 454 588888899999


Q ss_pred             cccccceeecchhhhhc
Q 035742          127 FQFNQLKLLVLVLEVIK  143 (214)
Q Consensus       127 l~~N~l~g~~p~~~~l~  143 (214)
                      +++|++++.+| +..++
T Consensus       358 l~~N~l~~l~~-l~~l~  373 (384)
T d2omza2         358 AGHNQISDLTP-LANLT  373 (384)
T ss_dssp             CCSSCCCBCGG-GTTCT
T ss_pred             CCCCcCCCChh-hccCC
Confidence            99998887655 44443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.68  E-value=1.2e-08  Score=82.41  Aligned_cols=101  Identities=25%  Similarity=0.295  Sum_probs=73.3

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|+++++.+++ ++  .+..++.++.+++..|.+.+  ...+..+++++.+++++|++++. + .+..+++|++|
T Consensus       262 ~~~L~~L~l~~~~l~~-~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L  334 (384)
T d2omza2         262 LTKLTELKLGANQISN-IS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRL  334 (384)
T ss_dssp             CTTCSEEECCSSCCCC-CG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEE
T ss_pred             cccCCEeeccCcccCC-CC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEE
Confidence            3578888998888874 33  47788888999999888874  23577888889999999988853 3 37888889999


Q ss_pred             hcccccceeecchhhhhcCCCCchhhhhh
Q 035742          126 HFQFNQLKLLVLVLEVIKGKHPRDFLCSI  154 (214)
Q Consensus       126 ~l~~N~l~g~~p~~~~l~g~~p~~~~~~~  154 (214)
                      ++++|++++ ++.+..++...-.++..|.
T Consensus       335 ~L~~n~l~~-l~~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         335 FFANNKVSD-VSSLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             ECCSSCCCC-CGGGGGCTTCCEEECCSSC
T ss_pred             ECCCCCCCC-ChhHcCCCCCCEEECCCCc
Confidence            999998876 4455554444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.67  E-value=1.7e-08  Score=74.93  Aligned_cols=81  Identities=23%  Similarity=0.371  Sum_probs=57.2

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|++++|.+++ ++  .+.++++|+.|++++|.+. .++ .+.++++|+.+++++|.+.. + ..+..+++|+.|+
T Consensus        62 ~nL~~L~Ls~N~l~~-~~--~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~  134 (199)
T d2omxa2          62 NNLTQINFSNNQLTD-IT--PLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLE  134 (199)
T ss_dssp             TTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred             CCcCcCccccccccC-cc--cccCCcccccccccccccc-ccc-cccccccccccccccccccc-c-cccchhhhhHHhh
Confidence            467778888887773 43  3777778888888877776 344 46777778888887777763 2 2366777888888


Q ss_pred             ccccccee
Q 035742          127 FQFNQLKL  134 (214)
Q Consensus       127 l~~N~l~g  134 (214)
                      +++|++..
T Consensus       135 l~~n~l~~  142 (199)
T d2omxa2         135 LSSNTISD  142 (199)
T ss_dssp             CCSSCCCC
T ss_pred             hhhhhhcc
Confidence            88887764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.67  E-value=2.7e-08  Score=73.86  Aligned_cols=91  Identities=25%  Similarity=0.377  Sum_probs=61.3

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|++++|.+. .++  .+.+++.|+.|++++|.+...  ..+..+++|+.+++++|++. .++ .+..+++|+.|
T Consensus        83 l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L  155 (199)
T d2omxa2          83 LTKLVDILMNNNQIA-DIT--PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQL  155 (199)
T ss_dssp             CTTCCEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEE
T ss_pred             Ccccccccccccccc-ccc--ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhc-ccc-ccccccccccc
Confidence            346888888888776 444  477778888888877777632  24667777888888777776 333 46677777777


Q ss_pred             hcccccceeecchhhhhcC
Q 035742          126 HFQFNQLKLLVLVLEVIKG  144 (214)
Q Consensus       126 ~l~~N~l~g~~p~~~~l~g  144 (214)
                      ++.+|++++.. .+..++.
T Consensus       156 ~l~~n~l~~l~-~l~~l~~  173 (199)
T d2omxa2         156 NFSSNQVTDLK-PLANLTT  173 (199)
T ss_dssp             ECCSSCCCCCG-GGTTCTT
T ss_pred             ccccccccCCc-cccCCCC
Confidence            77777776543 3444443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.67  E-value=2.6e-10  Score=85.33  Aligned_cols=84  Identities=20%  Similarity=0.236  Sum_probs=71.0

Q ss_pred             CCCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhh
Q 035742           46 AGRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVL  125 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L  125 (214)
                      ..+|+.|+|++|.|+ .++  .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++ .++ .+..+++|++|
T Consensus        47 L~~L~~L~Ls~n~I~-~i~--~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L  120 (198)
T d1m9la_          47 LKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVL  120 (198)
T ss_dssp             TTTCCEEECSEEEES-CCC--CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEE
T ss_pred             ccccceeECcccCCC-Ccc--cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-ccccccccccc
Confidence            458999999999998 665  5889999999999999998 66766667788999999999998 443 47888999999


Q ss_pred             hcccccceee
Q 035742          126 HFQFNQLKLL  135 (214)
Q Consensus       126 ~l~~N~l~g~  135 (214)
                      ++++|+++..
T Consensus       121 ~L~~N~i~~~  130 (198)
T d1m9la_         121 YMSNNKITNW  130 (198)
T ss_dssp             EESEEECCCH
T ss_pred             ccccchhccc
Confidence            9999998753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.61  E-value=3.4e-10  Score=84.63  Aligned_cols=87  Identities=18%  Similarity=0.109  Sum_probs=73.5

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCC--ccccccccchh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIP--LEVGLLTHLKV  124 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~~L~~  124 (214)
                      .+|+.|+|++|.|+ .+| ..+..++.|+.|++++|.++ .+ +.+..+++|+.|++++|+++ .++  ..+..+++|+.
T Consensus        70 ~~L~~L~Ls~N~i~-~i~-~~~~~~~~L~~L~l~~N~i~-~l-~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~  144 (198)
T d1m9la_          70 ENLRILSLGRNLIK-KIE-NLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLED  144 (198)
T ss_dssp             TTCCEEECCEEEEC-SCS-SHHHHHHHCCEEECSEEECC-CH-HHHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSE
T ss_pred             ccccChhhcccccc-ccc-cccccccccccccccccccc-cc-ccccccccccccccccchhc-cccccccccCCCccce
Confidence            48999999999998 677 66666778999999999998 44 45889999999999999998 444  46889999999


Q ss_pred             hhcccccceeecch
Q 035742          125 LHFQFNQLKLLVLV  138 (214)
Q Consensus       125 L~l~~N~l~g~~p~  138 (214)
                      |++++|++....+.
T Consensus       145 L~L~~N~l~~~~~~  158 (198)
T d1m9la_         145 LLLAGNPLYNDYKE  158 (198)
T ss_dssp             EEECSSHHHHHHCT
T ss_pred             eecCCCccccCccc
Confidence            99999998765553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.61  E-value=4.3e-08  Score=73.39  Aligned_cols=81  Identities=23%  Similarity=0.294  Sum_probs=51.1

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|++|++++|.+++ ++  .+..+++|+.|++++|+++ .+| .+..+++|+.+++++|.+. .++ .+..++.++.++
T Consensus        68 ~~L~~L~L~~n~i~~-l~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~l~~l~~l~  140 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTD-IK--PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLY  140 (210)
T ss_dssp             TTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-CCG-GGGGCTTCCEEE
T ss_pred             CCCCEEeCCCccccC-cc--ccccCcccccccccccccc-ccc-ccccccccccccccccccc-ccc-cccccccccccc
Confidence            467777777777773 43  3567777777777777776 344 4667777777777777665 332 344555555555


Q ss_pred             ccccccee
Q 035742          127 FQFNQLKL  134 (214)
Q Consensus       127 l~~N~l~g  134 (214)
                      +++|.+++
T Consensus       141 ~~~n~l~~  148 (210)
T d1h6ta2         141 LGNNKITD  148 (210)
T ss_dssp             CCSSCCCC
T ss_pred             cccccccc
Confidence            55555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.60  E-value=3e-08  Score=74.27  Aligned_cols=81  Identities=21%  Similarity=0.354  Sum_probs=70.0

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.|++++|.++ .++  .+..+++|+.|++++|.+++ ++ .++.+++|+.|++++|+++ .+| .+..+++|+.|+
T Consensus        46 ~~L~~L~l~~~~i~-~l~--~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEE
T ss_pred             cCccEEECcCCCCC-Cch--hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-cccccccccccc
Confidence            36899999999998 454  48889999999999999985 44 4789999999999999998 565 588999999999


Q ss_pred             ccccccee
Q 035742          127 FQFNQLKL  134 (214)
Q Consensus       127 l~~N~l~g  134 (214)
                      +++|.+..
T Consensus       119 l~~~~~~~  126 (210)
T d1h6ta2         119 LEHNGISD  126 (210)
T ss_dssp             CTTSCCCC
T ss_pred             cccccccc
Confidence            99998764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.59  E-value=3.1e-08  Score=74.85  Aligned_cols=83  Identities=19%  Similarity=0.255  Sum_probs=63.3

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      ..+..+.++.+.+...   ..+...++|+.|++++|.+....  .+.++++|+.|++++|+++ .++. +.++++|++|+
T Consensus       129 ~~~~~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~-~l~~-l~~l~~L~~L~  201 (227)
T d1h6ua2         129 SNLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVH  201 (227)
T ss_dssp             TTCCEEECCSSCCCCC---GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEE
T ss_pred             cchhhhhchhhhhchh---hhhccccccccccccccccccch--hhcccccceecccCCCccC-CChh-hcCCCCCCEEE
Confidence            4677788888877632   34777888899999888886432  3788888999999998887 4443 78888899999


Q ss_pred             cccccceeec
Q 035742          127 FQFNQLKLLV  136 (214)
Q Consensus       127 l~~N~l~g~~  136 (214)
                      +++|++++..
T Consensus       202 Ls~N~lt~i~  211 (227)
T d1h6ua2         202 LKNNQISDVS  211 (227)
T ss_dssp             CTTSCCCBCG
T ss_pred             CcCCcCCCCc
Confidence            9998888643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.47  E-value=1.1e-07  Score=71.61  Aligned_cols=90  Identities=20%  Similarity=0.299  Sum_probs=52.8

Q ss_pred             CCeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhh
Q 035742           47 GRVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLH  126 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~  126 (214)
                      .+|+.++++++...+.   ..+...+.++.+.++.+.+....  .+..+++|+.|++++|.+... + .++++++|+.|+
T Consensus       107 ~~L~~l~l~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~  179 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDV---TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL-T-PLANLSKLTTLK  179 (227)
T ss_dssp             TTCCEEECTTSCCCCC---GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEE
T ss_pred             cccccccccccccccc---chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc-h-hhcccccceecc
Confidence            4566666766665532   24556666677777666665322  355666677777777766522 2 256666777777


Q ss_pred             cccccceeecchhhhhcC
Q 035742          127 FQFNQLKLLVLVLEVIKG  144 (214)
Q Consensus       127 l~~N~l~g~~p~~~~l~g  144 (214)
                      +++|++++ ++.+..+..
T Consensus       180 Ls~n~l~~-l~~l~~l~~  196 (227)
T d1h6ua2         180 ADDNKISD-ISPLASLPN  196 (227)
T ss_dssp             CCSSCCCC-CGGGGGCTT
T ss_pred             cCCCccCC-ChhhcCCCC
Confidence            77776665 333444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.31  E-value=3.3e-07  Score=72.50  Aligned_cols=81  Identities=32%  Similarity=0.425  Sum_probs=46.3

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCC-----------------cccceeecccccccc
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNL-----------------SKLSYISLQSNQLSG  110 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l-----------------~~L~~L~ls~N~l~g  110 (214)
                      ++++|+|++++++ .+| +   .+++|++|++++|+|+ .+|..++++                 +.|++|++++|.+. 
T Consensus        39 ~l~~LdLs~~~L~-~lp-~---~~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~-  111 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLP-E---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-  111 (353)
T ss_dssp             TCSEEECTTSCCS-CCC-S---CCTTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-
T ss_pred             CCCEEEeCCCCCC-CCC-C---CCCCCCEEECCCCCCc-ccccchhhhhhhhhhhcccchhhhhccccccccccccccc-
Confidence            4566666666665 455 3   2345666666666665 455433221                 24566666666665 


Q ss_pred             CCCccccccccchhhhcccccceeec
Q 035742          111 KIPLEVGLLTHLKVLHFQFNQLKLLV  136 (214)
Q Consensus       111 ~~p~~~~~l~~L~~L~l~~N~l~g~~  136 (214)
                      .+|. ++.+++|++|++++|.+....
T Consensus       112 ~lp~-~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         112 KLPE-LQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             SCCC-CTTCTTCCEEECCSSCCSCCC
T ss_pred             cccc-hhhhccceeeccccccccccc
Confidence            4553 456667777777766665443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.3e-07  Score=65.69  Aligned_cols=70  Identities=21%  Similarity=0.200  Sum_probs=48.8

Q ss_pred             cccCCCCCCcEEeCcCCcCcCC--ChhhhhCCcccceeeccccccccCCCc-cccccccchhhhcccccceeec
Q 035742           66 FSFSSFPQLVHLDLSLNGFLGT--IPSQIGNLSKLSYISLQSNQLSGKIPL-EVGLLTHLKVLHFQFNQLKLLV  136 (214)
Q Consensus        66 ~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~ls~N~l~g~~p~-~~~~l~~L~~L~l~~N~l~g~~  136 (214)
                      ..+..++.|++|++++|+++..  ++..+..+++|+.|++++|.++ .++. .+.....|+.+++++|.++...
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCc
Confidence            4445678888888888888743  2445677888888888888887 4443 2333456788888888887543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2.3e-06  Score=64.60  Aligned_cols=85  Identities=21%  Similarity=0.183  Sum_probs=52.5

Q ss_pred             CeEEEEecCCCCccccCccccCCCC-CCcEEeCcCCcCcCCChhhhhCCccccee-eccccccccCCC-ccccccccchh
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFP-QLVHLDLSLNGFLGTIPSQIGNLSKLSYI-SLQSNQLSGKIP-LEVGLLTHLKV  124 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L-~ls~N~l~g~~p-~~~~~l~~L~~  124 (214)
                      .+..+...++.+. .++...|.+++ .++.|++++|+++ .++.......+++.+ ++.+|+++ .+| ..|.++++|++
T Consensus       129 ~l~~~~~~n~~l~-~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~  205 (242)
T d1xwdc1         129 KVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVI  205 (242)
T ss_dssp             CEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSE
T ss_pred             ccccccccccccc-cccccccccccccceeeeccccccc-ccccccccchhhhccccccccccc-cccHHHhcCCCCCCE
Confidence            4555556666665 44325566554 6777788877777 444444445554444 45666777 444 34677778888


Q ss_pred             hhcccccceee
Q 035742          125 LHFQFNQLKLL  135 (214)
Q Consensus       125 L~l~~N~l~g~  135 (214)
                      |++++|+++..
T Consensus       206 L~Ls~N~l~~l  216 (242)
T d1xwdc1         206 LDISRTRIHSL  216 (242)
T ss_dssp             EECTTSCCCCC
T ss_pred             EECCCCcCCcc
Confidence            88888877743

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.94  E-value=5.9e-06  Score=65.03  Aligned_cols=75  Identities=21%  Similarity=0.317  Sum_probs=55.3

Q ss_pred             eEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeeccccccccCCCccccccccchhhhcc
Q 035742           49 VINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSGKIPLEVGLLTHLKVLHFQ  128 (214)
Q Consensus        49 L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~L~l~  128 (214)
                      ....++..+.+.     .....+++|++|++++|+++ .+|.   .+++|+.|++++|+|+ .+|..   +++|++|+++
T Consensus       266 ~~~~~~~~~~~~-----~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~  332 (353)
T d1jl5a_         266 LYYLNASSNEIR-----SLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVE  332 (353)
T ss_dssp             CCEEECCSSCCS-----EECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECC
T ss_pred             hcccccccCccc-----cccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-ccccc---cCCCCEEECc
Confidence            344455555544     22234678999999999998 6774   3678999999999998 77764   4678899999


Q ss_pred             cccceeecc
Q 035742          129 FNQLKLLVL  137 (214)
Q Consensus       129 ~N~l~g~~p  137 (214)
                      +|+++. +|
T Consensus       333 ~N~L~~-lp  340 (353)
T d1jl5a_         333 YNPLRE-FP  340 (353)
T ss_dssp             SSCCSS-CC
T ss_pred             CCcCCC-CC
Confidence            999874 44

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.2e-06  Score=62.58  Aligned_cols=62  Identities=26%  Similarity=0.213  Sum_probs=29.0

Q ss_pred             CeEEEEecCCCCccccC--ccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeecccccccc
Q 035742           48 RVINISLRNTGLSGTLS--DFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSNQLSG  110 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~g  110 (214)
                      +|++|+|++|.|+. ++  ...+..+++|+.|++++|.++..-+-.+....+|+.+++++|.++.
T Consensus        66 ~L~~L~Ls~N~i~~-l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          66 ELLSLNLSNNRLYR-LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             TCCCCCCCSSCCCC-CSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             CCCEeeCCCccccC-CchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            45555555555552 21  0223445555555555555552222122233345555555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.7e-06  Score=70.55  Aligned_cols=87  Identities=24%  Similarity=0.298  Sum_probs=59.9

Q ss_pred             CCeEEEEecCCCCcc----ccCccccCCCCCCcEEeCcCCcCcCC----Chhhhh-CCcccceeeccccccccC----CC
Q 035742           47 GRVINISLRNTGLSG----TLSDFSFSSFPQLVHLDLSLNGFLGT----IPSQIG-NLSKLSYISLQSNQLSGK----IP  113 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g----~~p~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~-~l~~L~~L~ls~N~l~g~----~p  113 (214)
                      .++++|+|++|+|+-    .+. ..+...++|+.|+|++|.++..    +...+. ...+|+.|++++|+++..    ++
T Consensus        27 ~~l~~L~L~~~~i~~~~~~~l~-~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~  105 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  105 (460)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHH-HHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccccc
Confidence            367788888888762    233 4467788899999998887521    111221 234688999998888643    34


Q ss_pred             ccccccccchhhhccccccee
Q 035742          114 LEVGLLTHLKVLHFQFNQLKL  134 (214)
Q Consensus       114 ~~~~~l~~L~~L~l~~N~l~g  134 (214)
                      ..+..+++|++|++++|.++.
T Consensus       106 ~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1         106 STLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             HHTTSCTTCCEEECCSSBCHH
T ss_pred             chhhccccccccccccccchh
Confidence            556778889999999888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=3.9e-06  Score=65.27  Aligned_cols=82  Identities=18%  Similarity=0.180  Sum_probs=44.8

Q ss_pred             CeEEEEecCCCCccccCccccCCCCCCcEEeCcCCcCcCCChhhhhCCcccceeecccc-ccccC-CCccccccccchhh
Q 035742           48 RVINISLRNTGLSGTLSDFSFSSFPQLVHLDLSLNGFLGTIPSQIGNLSKLSYISLQSN-QLSGK-IPLEVGLLTHLKVL  125 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~N-~l~g~-~p~~~~~l~~L~~L  125 (214)
                      +|++|+++++.++.......+..+++|++|+++++.++...+..++.+++|+.|+++++ .++.. +..-...+++|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            56666666666543221134556666666666666666555666666666666666663 33311 11112345556666


Q ss_pred             hccc
Q 035742          126 HFQF  129 (214)
Q Consensus       126 ~l~~  129 (214)
                      ++++
T Consensus       127 ~ls~  130 (284)
T d2astb2         127 NLSW  130 (284)
T ss_dssp             ECCC
T ss_pred             cccc
Confidence            6655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=2.4e-06  Score=69.64  Aligned_cols=86  Identities=17%  Similarity=0.144  Sum_probs=64.9

Q ss_pred             CeEEEEecCCCCcccc-CccccCCCCCCcEEeCcCCcCcC----CChhhhhCCcccceeeccccccccC----CCcccc-
Q 035742           48 RVINISLRNTGLSGTL-SDFSFSSFPQLVHLDLSLNGFLG----TIPSQIGNLSKLSYISLQSNQLSGK----IPLEVG-  117 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~~-p~~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~-  117 (214)
                      +|++||+++|+++..- . .-+..+++++.|+|++|.++.    .+...+..+++|++|+|++|.|+..    +...+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~-~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHH-HHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            5899999999998431 2 345678999999999999872    3455678899999999999998621    222222 


Q ss_pred             ccccchhhhccccccee
Q 035742          118 LLTHLKVLHFQFNQLKL  134 (214)
Q Consensus       118 ~l~~L~~L~l~~N~l~g  134 (214)
                      ...+|++|++++|+++.
T Consensus        82 ~~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             TTCCCCEEECTTSCCBG
T ss_pred             CCCCCCEEECCCCCccc
Confidence            22479999999999874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.39  E-value=1.4e-05  Score=63.40  Aligned_cols=85  Identities=19%  Similarity=0.248  Sum_probs=44.6

Q ss_pred             CeEEEEecCCCCccc-----cCccccCCCCCCcEEeCcCCcCcCC----ChhhhhCCcccceeeccccccccCCCc----
Q 035742           48 RVINISLRNTGLSGT-----LSDFSFSSFPQLVHLDLSLNGFLGT----IPSQIGNLSKLSYISLQSNQLSGKIPL----  114 (214)
Q Consensus        48 ~L~~L~L~~n~l~g~-----~p~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~~p~----  114 (214)
                      .++.|+|++|.++..     +. ..+...++|+.|++++|.++..    +...+..+++|++|++++|.+++.-..    
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~-~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~  265 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  265 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHH-TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             hhcccccccccccccccccchh-hhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHH
Confidence            466666666665421     12 2345556666666666665422    333445566666666666666532111    


Q ss_pred             cccc--cccchhhhcccccce
Q 035742          115 EVGL--LTHLKVLHFQFNQLK  133 (214)
Q Consensus       115 ~~~~--l~~L~~L~l~~N~l~  133 (214)
                      .+..  ...|++|++++|+++
T Consensus       266 ~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         266 AFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHTCSSCCCCEEECCSSCCB
T ss_pred             HhhhccCCCCCEEECCCCcCC
Confidence            1211  234666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.27  E-value=1.8e-05  Score=62.77  Aligned_cols=87  Identities=16%  Similarity=0.198  Sum_probs=64.9

Q ss_pred             CCeEEEEecCCCCccc----cCccccCCCCCCcEEeCcCCcCcCCChh----hhhC--CcccceeeccccccccC----C
Q 035742           47 GRVINISLRNTGLSGT----LSDFSFSSFPQLVHLDLSLNGFLGTIPS----QIGN--LSKLSYISLQSNQLSGK----I  112 (214)
Q Consensus        47 ~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~l~~n~l~~~~p~----~~~~--l~~L~~L~ls~N~l~g~----~  112 (214)
                      .+|+.|+|++|.++..    +. ..+...++|++|++++|.++..-..    .+..  ...|+.|++++|+++..    +
T Consensus       215 ~~L~~L~Ls~N~i~~~g~~~L~-~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l  293 (344)
T d2ca6a1         215 QELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL  293 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHH-HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred             hhhccccccccccccccccccc-ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHH
Confidence            5799999999998632    33 5677899999999999999754233    3333  36799999999998742    2


Q ss_pred             Cccc-cccccchhhhccccccee
Q 035742          113 PLEV-GLLTHLKVLHFQFNQLKL  134 (214)
Q Consensus       113 p~~~-~~l~~L~~L~l~~N~l~g  134 (214)
                      ...+ .++++|++|++++|+|+.
T Consensus       294 ~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         294 KTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHccCCCCCEEECCCCcCCC
Confidence            2333 256789999999999864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=5.5e-05  Score=58.49  Aligned_cols=86  Identities=14%  Similarity=0.158  Sum_probs=48.9

Q ss_pred             CCeEEEEecCC-CCccc-cCccccC-CCCCCcEEeCcCC--cCcCC-ChhhhhCCcccceeecccc-ccccCCCcccccc
Q 035742           47 GRVINISLRNT-GLSGT-LSDFSFS-SFPQLVHLDLSLN--GFLGT-IPSQIGNLSKLSYISLQSN-QLSGKIPLEVGLL  119 (214)
Q Consensus        47 ~~L~~L~L~~n-~l~g~-~p~~~~~-~l~~L~~L~l~~n--~l~~~-~p~~~~~l~~L~~L~ls~N-~l~g~~p~~~~~l  119 (214)
                      .+|++|+++++ .++.. +. ..+. ..+.|+.|+++++  .++.. +.....++++|++|+++++ .+++.....+.++
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~  199 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQ-VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  199 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHH-HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             Hhccccccccccccccccch-hhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhccc
Confidence            36788888774 33311 11 1222 2356777777754  23321 2223345677777777764 4565556667777


Q ss_pred             ccchhhhccc-ccce
Q 035742          120 THLKVLHFQF-NQLK  133 (214)
Q Consensus       120 ~~L~~L~l~~-N~l~  133 (214)
                      ++|++|++++ +.++
T Consensus       200 ~~L~~L~L~~C~~i~  214 (284)
T d2astb2         200 NYLQHLSLSRCYDII  214 (284)
T ss_dssp             TTCCEEECTTCTTCC
T ss_pred             CcCCEEECCCCCCCC
Confidence            7777777777 3444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.98  E-value=0.00014  Score=51.68  Aligned_cols=87  Identities=10%  Similarity=0.093  Sum_probs=62.1

Q ss_pred             CCCeEEEEecCC-CCccc----cCccccCCCCCCcEEeCcCCcCcC----CChhhhhCCcccceeeccccccccC----C
Q 035742           46 AGRVINISLRNT-GLSGT----LSDFSFSSFPQLVHLDLSLNGFLG----TIPSQIGNLSKLSYISLQSNQLSGK----I  112 (214)
Q Consensus        46 ~~~L~~L~L~~n-~l~g~----~p~~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~g~----~  112 (214)
                      .++|++|+|+++ .++..    +- ..+...+.|+.|++++|.+..    .+...+...+.|+.|++++|.++..    +
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~-~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHH-HHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            357999999874 45421    22 356677889999999998863    3334556678899999999998742    2


Q ss_pred             Cccccccccchhhhcccccce
Q 035742          113 PLEVGLLTHLKVLHFQFNQLK  133 (214)
Q Consensus       113 p~~~~~l~~L~~L~l~~N~l~  133 (214)
                      -..+..-++|++|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence            234556678999999988654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.96  E-value=0.00071  Score=47.84  Aligned_cols=85  Identities=15%  Similarity=0.110  Sum_probs=58.3

Q ss_pred             CCCeEEEEecCCCCccc----cCccccCCCCCCcEEeCcCCcCcCC----ChhhhhCCcccceeeccccccccC------
Q 035742           46 AGRVINISLRNTGLSGT----LSDFSFSSFPQLVHLDLSLNGFLGT----IPSQIGNLSKLSYISLQSNQLSGK------  111 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~------  111 (214)
                      ..+|++|+|++|.+...    +. ..+...+.|+.|++++|.++..    +-..+...++|++|++++|.+...      
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la-~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~  121 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLI-ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  121 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHH-HHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             CCccceeeccccccchhHHHHHh-hhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHH
Confidence            45799999999998732    22 3445678999999999999743    223456678899999999876521      


Q ss_pred             -CCccccccccchhhhccccc
Q 035742          112 -IPLEVGLLTHLKVLHFQFNQ  131 (214)
Q Consensus       112 -~p~~~~~l~~L~~L~l~~N~  131 (214)
                       +...+..-++|+.|+++.+.
T Consensus       122 ~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         122 DMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCCccEeeCcCCC
Confidence             22233444667777766543

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.07  E-value=0.0079  Score=46.21  Aligned_cols=43  Identities=21%  Similarity=0.430  Sum_probs=30.2

Q ss_pred             hcCCCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          168 MLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       168 ~l~~~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ...+..|+.....+..+.+++..   |.+.+|.+||+|.+|+++|+
T Consensus       255 v~~~~~~~~p~~~~~~~~~li~~---cl~~~P~~RPt~~ev~~~L~  297 (301)
T d1lufa_         255 VRDGNILACPENCPLELYNLMRL---CWSKLPADRPSFCSIHRILQ  297 (301)
T ss_dssp             HHTTCCCCCCTTCCHHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             HHcCCCCCCCccchHHHHHHHHH---HcCCChhHCcCHHHHHHHHH
Confidence            34444444333344555555554   99999999999999999987

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.016  Score=44.59  Aligned_cols=42  Identities=17%  Similarity=0.360  Sum_probs=28.9

Q ss_pred             CCCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhcC
Q 035742          170 DPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQI  214 (214)
Q Consensus       170 ~~~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~~  214 (214)
                      ++..++.....+..+.+++..   |...+|.+||+|.+|+++|++
T Consensus       250 ~~~~~~~p~~~~~~l~~li~~---cl~~~P~~RPs~~~il~~L~~  291 (308)
T d1p4oa_         250 EGGLLDKPDNCPDMLFELMRM---CWQYNPKMRPSFLEIISSIKE  291 (308)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHH---HTCSSGGGSCCHHHHHHHHGG
T ss_pred             hCCCCCCcccchHHHHHHHHH---HcCCChhHCcCHHHHHHHHHH
Confidence            444333333333555555444   999999999999999999873

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.14  E-value=0.0078  Score=41.94  Aligned_cols=87  Identities=14%  Similarity=0.098  Sum_probs=55.9

Q ss_pred             CCCeEEEEecC-CCCccc----cCccccCCCCCCcEEeCcCCcCcCC----ChhhhhCCcccceeeccccccccC----C
Q 035742           46 AGRVINISLRN-TGLSGT----LSDFSFSSFPQLVHLDLSLNGFLGT----IPSQIGNLSKLSYISLQSNQLSGK----I  112 (214)
Q Consensus        46 ~~~L~~L~L~~-n~l~g~----~p~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~g~----~  112 (214)
                      ...|++|+|++ +.++..    +- ..+...++|+.|++++|.++..    +-..+...++++.+++++|.+...    +
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~-~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHH-HHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            35788999987 445421    22 4456788899999999988643    223445678889999988887532    2


Q ss_pred             Cccccccccchhh--hcccccce
Q 035742          113 PLEVGLLTHLKVL--HFQFNQLK  133 (214)
Q Consensus       113 p~~~~~l~~L~~L--~l~~N~l~  133 (214)
                      -..+...++|+.+  ++++|.+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHhCccccEEeeccCCCcCc
Confidence            2345556677654  44556653

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.031  Score=42.29  Aligned_cols=29  Identities=17%  Similarity=0.485  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++   ..|...+|.+||+|.+|+++|+
T Consensus       240 ~~l~~li---~~cl~~~p~~RPt~~eil~~L~  268 (283)
T d1mqba_         240 SAIYQLM---MQCWQQERARRPKFADIVSILD  268 (283)
T ss_dssp             HHHHHHH---HHHTCSSTTTSCCHHHHHHHHH
T ss_pred             HHHHHHH---HHHCcCCHhHCcCHHHHHHHHH
Confidence            4455544   4599999999999999999885

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.037  Score=41.50  Aligned_cols=38  Identities=18%  Similarity=0.380  Sum_probs=28.0

Q ss_pred             CCCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          170 DPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       170 ~~~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ...+|...   +..+.+++..   |...+|.+||+|.+|+++|+
T Consensus       218 ~~~~~~~~---~~~~~~li~~---cl~~dP~~Rps~~~l~~~L~  255 (262)
T d1byga_         218 KMDAPDGC---PPAVYEVMKN---CWHLDAAMRPSFLQLREQLE  255 (262)
T ss_dssp             CCCCCTTC---CHHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             CCCCCccC---CHHHHHHHHH---HcccCHhHCcCHHHHHHHHH
Confidence            33444433   3555555554   99999999999999999986

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.035  Score=41.79  Aligned_cols=29  Identities=34%  Similarity=0.629  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +.+.+++.   .|...+|.+||+|.+|+++|+
T Consensus       237 ~~l~~li~---~cl~~~P~~Rpt~~ei~~~L~  265 (272)
T d1qpca_         237 EELYQLMR---LCWKERPEDRPTFDYLRSVLE  265 (272)
T ss_dssp             HHHHHHHH---HHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHH---HHcCCCHhHCcCHHHHHHHhh
Confidence            44455544   499999999999999999886

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.032  Score=42.94  Aligned_cols=29  Identities=17%  Similarity=0.507  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +.+.+++   ..|...+|.+||+|.+|+++|+
T Consensus       261 ~~l~~li---~~cl~~dP~~RPs~~ei~~~L~  289 (311)
T d1r0pa_         261 DPLYEVM---LKCWHPKAEMRPSFSELVSRIS  289 (311)
T ss_dssp             HHHHHHH---HHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHH---HHHcCCCHhHCcCHHHHHHHHH
Confidence            4445444   4599999999999999999986

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.025  Score=42.84  Aligned_cols=30  Identities=17%  Similarity=0.431  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          181 QEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       181 ~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +..+.+++..   |...+|.+||+|.+|+++|+
T Consensus       239 ~~~l~~li~~---cl~~dp~~RPt~~~il~~Le  268 (276)
T d1uwha_         239 PKAMKRLMAE---CLKKKRDERPLFPQILASIE  268 (276)
T ss_dssp             CHHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             hHHHHHHHHH---HcCCCHhHCcCHHHHHHHHH
Confidence            3555555554   99999999999999999886

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.79  E-value=0.043  Score=42.01  Aligned_cols=30  Identities=23%  Similarity=0.579  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          181 QEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       181 ~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ++.+.+++..   |...+|.+||+|.+|++.|+
T Consensus       252 ~~~~~~li~~---cl~~dP~~RPs~~eil~~L~  281 (309)
T d1fvra_         252 DDEVYDLMRQ---CWREKPYERPSFAQILVSLN  281 (309)
T ss_dssp             CHHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             CHHHHHHHHH---HcCCChhHCcCHHHHHHHHH
Confidence            3555555554   99999999999999999885

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.75  E-value=0.0061  Score=42.54  Aligned_cols=86  Identities=20%  Similarity=0.181  Sum_probs=60.0

Q ss_pred             CCCeEEEEecCCCCccc----cCccccCCCCCCcEEeCcCCcCcCC----ChhhhhCCcccceeec--ccccccc----C
Q 035742           46 AGRVINISLRNTGLSGT----LSDFSFSSFPQLVHLDLSLNGFLGT----IPSQIGNLSKLSYISL--QSNQLSG----K  111 (214)
Q Consensus        46 ~~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l--s~N~l~g----~  111 (214)
                      ..+|++|++++|.++..    +. ..+...+.++.+++++|.+...    +-..+...++|+.++|  ++|.+..    .
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~-~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALA-EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHH-HHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             CCccCeeeccCCcccHHHHHHHH-HHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            45899999999998633    22 3455678999999999988633    2345566788887555  5666643    2


Q ss_pred             CCccccccccchhhhcccccc
Q 035742          112 IPLEVGLLTHLKVLHFQFNQL  132 (214)
Q Consensus       112 ~p~~~~~l~~L~~L~l~~N~l  132 (214)
                      +...+...++|+.|+++.+..
T Consensus       124 La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCcCEEeCcCCCC
Confidence            334456678888888877654

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.65  E-value=0.077  Score=40.41  Aligned_cols=30  Identities=20%  Similarity=0.381  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          181 QEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       181 ~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +..+.+++.   .|...+|.+||+|.+|+++|+
T Consensus       259 ~~~l~~li~---~cl~~~P~~RPs~~ei~~~L~  288 (299)
T d1jpaa_         259 PSALHQLML---DCWQKDRNHRPKFGQIVNTLD  288 (299)
T ss_dssp             CHHHHHHHH---HHTCSSTTTSCCHHHHHHHHH
T ss_pred             hHHHHHHHH---HHcCCCHhHCcCHHHHHHHHH
Confidence            345555544   499999999999999999885

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.54  E-value=0.085  Score=39.69  Aligned_cols=29  Identities=21%  Similarity=0.484  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |...+|.+||+|++|+++|+
T Consensus       237 ~~~~~li~~---cl~~dp~~RPs~~~i~~~L~  265 (277)
T d1xbba_         237 REMYDLMNL---CWTYDVENRPGFAAVELRLR  265 (277)
T ss_dssp             HHHHHHHHH---HTCSSTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HcCCCHhHCcCHHHHHHHhh
Confidence            555555544   99999999999999998875

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.53  E-value=0.063  Score=40.68  Aligned_cols=29  Identities=28%  Similarity=0.436  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++.   .|...+|.+||+|.+|++.|+
T Consensus       239 ~~l~~li~---~cl~~~p~~RPs~~~i~~~L~  267 (285)
T d1u59a_         239 PELYALMS---DCWIYKWEDRPDFLTVEQRMR  267 (285)
T ss_dssp             HHHHHHHH---HTTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHH---HHcCCCHhHCcCHHHHHHHHH
Confidence            45555554   499999999999999999885

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.29  E-value=0.042  Score=41.03  Aligned_cols=25  Identities=28%  Similarity=0.542  Sum_probs=21.4

Q ss_pred             HHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          189 GVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       189 ~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      .+...|...+|.+||+|++|+++|+
T Consensus       233 ~li~~cl~~~p~~Rps~~~il~~L~  257 (263)
T d1sm2a_         233 QIMNHCWKERPEDRPAFSRLLRQLA  257 (263)
T ss_dssp             HHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHccCCHhHCcCHHHHHHHHH
Confidence            3344499999999999999999986

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.1  Score=39.44  Aligned_cols=29  Identities=31%  Similarity=0.594  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +.+.+++   ..|...+|.+||+|.+|+++|+
T Consensus       241 ~~l~~li---~~cl~~dP~~Rps~~~i~~~L~  269 (285)
T d1fmka3         241 ESLHDLM---CQCWRKEPEERPTFEYLQAFLE  269 (285)
T ss_dssp             HHHHHHH---HHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHH---HHHcccCHhHCcCHHHHHHHHh
Confidence            4445444   4599999999999999999886

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.11  Score=38.92  Aligned_cols=30  Identities=23%  Similarity=0.474  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          181 QEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       181 ~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +..+.+++..   |...+|.+||+|.+|.+.|+
T Consensus       241 ~~~l~~li~~---cl~~dp~~RPt~~ei~~~L~  270 (273)
T d1u46a_         241 PQDIYNVMVQ---CWAHKPEDRPTFVALRDFLL  270 (273)
T ss_dssp             CHHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             cHHHHHHHHH---HcCCChhHCcCHHHHHHHHH
Confidence            3455555555   99999999999999999886

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.10  E-value=0.12  Score=38.64  Aligned_cols=30  Identities=30%  Similarity=0.513  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          181 QEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       181 ~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +..+.+++..   |...+|.+||++.+|++.|+
T Consensus       235 ~~~~~~li~~---cl~~dp~~Rps~~ei~~~L~  264 (273)
T d1mp8a_         235 PPTLYSLMTK---CWAYDPSRRPRFTELKAQLS  264 (273)
T ss_dssp             CHHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             CHHHHHHHHH---HcCCCHhHCcCHHHHHHHHH
Confidence            3555666555   99999999999999998875

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.65  E-value=0.17  Score=38.19  Aligned_cols=29  Identities=28%  Similarity=0.618  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |...+|.+||+|.+|+++|+
T Consensus       243 ~~l~~li~~---cl~~dP~~Rps~~ei~~~L~  271 (287)
T d1opja_         243 EKVYELMRA---CWQWNPSDRPSFAEIHQAFE  271 (287)
T ss_dssp             HHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HcCCCHhHCcCHHHHHHHHH
Confidence            445555544   99999999999999998875

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.38  E-value=0.085  Score=40.31  Aligned_cols=29  Identities=28%  Similarity=0.686  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++.   .|...+|.+||+|.+|+++|+
T Consensus       275 ~~l~~Li~---~cl~~dP~~RPs~~~il~~L~  303 (311)
T d1t46a_         275 AEMYDIMK---TCWDADPLKRPTFKQIVQLIE  303 (311)
T ss_dssp             HHHHHHHH---HHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHH---HHcCCChhHCcCHHHHHHHHH
Confidence            44444444   499999999999999999996

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.27  E-value=0.18  Score=38.63  Aligned_cols=29  Identities=24%  Similarity=0.422  Sum_probs=23.8

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      +.+.+++..   |...+|.+||+|++|+++|.
T Consensus       294 ~~l~~li~~---cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         294 EEIYIIMQS---CWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             HHHHHHHHH---HTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HcCCChhHCcCHHHHHHHHh
Confidence            445555554   99999999999999999985

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.85  E-value=0.22  Score=36.84  Aligned_cols=29  Identities=31%  Similarity=0.519  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++..   |...+|.+||++.++++.|.
T Consensus       228 ~~l~~li~~---cl~~dP~~RPt~~eil~~L~  256 (258)
T d1k2pa_         228 EKVYTIMYS---CWHEKADERPTFKILLSNIL  256 (258)
T ss_dssp             HHHHHHHHH---TTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHH---HccCCHhHCcCHHHHHHHhh
Confidence            445555555   99999999999999999875

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.90  E-value=0.16  Score=38.50  Aligned_cols=29  Identities=28%  Similarity=0.611  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++.   .|...+|.+||++.+|+++|+
T Consensus       264 ~~l~~li~---~cl~~dP~~Rps~~eil~~L~  292 (299)
T d1fgka_         264 NELYMMMR---DCWHAVPSQRPTFKQLVEDLD  292 (299)
T ss_dssp             HHHHHHHH---HHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHH---HHccCCHhHCcCHHHHHHHHH
Confidence            44454444   499999999999999999986

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.89  E-value=0.2  Score=38.03  Aligned_cols=45  Identities=22%  Similarity=0.293  Sum_probs=30.5

Q ss_pred             hcCCCCCCCcchhHHHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          168 MLDPRLPTSSCSVQEKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       168 ~l~~~lp~~~~~~~~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      .+.+.+|..... .+....+..+...|...+|.+||+|.+|+++|+
T Consensus       249 ~~~p~~~~~~~~-~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~  293 (303)
T d1vjya_         249 KLRPNIPNRWQS-CEALRVMAKIMRECWYANGAARLTALRIKKTLS  293 (303)
T ss_dssp             CCCCCCCGGGGG-CHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHH
T ss_pred             ccCCCCCcccCC-hHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHH
Confidence            334444444322 123344556667799999999999999999886

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.88  E-value=0.23  Score=37.38  Aligned_cols=29  Identities=24%  Similarity=0.568  Sum_probs=23.1

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++   ..|...+|.+||++.+|+++|+
T Consensus       264 ~~l~~li---~~cl~~dP~~Rpt~~eil~~L~  292 (299)
T d1ywna1         264 PEMYQTM---LDCWHGEPSQRPTFSELVEHLG  292 (299)
T ss_dssp             HHHHHHH---HHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHH---HHHcCCChhHCcCHHHHHHHHH
Confidence            4444444   4599999999999999999886

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.57  E-value=0.29  Score=37.29  Aligned_cols=29  Identities=21%  Similarity=0.292  Sum_probs=22.6

Q ss_pred             HHHHHHHHHhhcccCCCCCCCCCHHHHHHHhc
Q 035742          182 EKLISIMGVAFPCLNESPVSRPTMQTVSQQLQ  213 (214)
Q Consensus       182 ~~L~~l~~~~l~C~~~~p~~Rp~m~~V~~~L~  213 (214)
                      ..+.+++.   .|...+|.+||++++|++.|+
T Consensus       240 ~~~~~li~---~cl~~dP~~RPs~~eil~~l~  268 (317)
T d1xkka_         240 IDVYMIMV---KCWMIDADSRPKFRELIIEFS  268 (317)
T ss_dssp             HHHHHHHH---HHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHH---HhCCCChhhCcCHHHHHHHHH
Confidence            44444444   599999999999999998764