Citrus Sinensis ID: 035749
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 405 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LQ14 | 629 | Pentatricopeptide repeat- | yes | no | 0.972 | 0.626 | 0.395 | 3e-82 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.972 | 0.641 | 0.382 | 7e-82 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.972 | 0.611 | 0.395 | 2e-81 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.972 | 0.654 | 0.372 | 9e-81 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.972 | 0.618 | 0.39 | 2e-80 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.972 | 0.625 | 0.382 | 5e-80 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.972 | 0.623 | 0.38 | 1e-79 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.972 | 0.621 | 0.382 | 1e-79 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.972 | 0.625 | 0.375 | 3e-79 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.972 | 0.704 | 0.377 | 2e-78 |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 305 bits (782), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 158/400 (39%), Positives = 240/400 (60%), Gaps = 6/400 (1%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA AL ++ A GC+P++ TY T++NGLC+ G +AL+L ++M G E D V
Sbjct: 203 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE------ADVV 256
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
IYTTIID LC V+ A L +M +K I P+VVTYNS+IR C ++A RL +M
Sbjct: 257 IYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 316
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVVTFS ++D K GK+ EA +L + MI+ + P+ F Y++L++GFC+ R+
Sbjct: 317 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 376
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ AK +F M S C NV +Y+ LI G+CK K +E + L+ EM +G+ VTYNTL
Sbjct: 377 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 436
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
GLF+ + A K+F +M GV D Y +DGLCK G + +AL +F L+ K
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
E DI +Y+ +I+G+CK+G+++ W+LF SL + +V+ Y MI C G ++A
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
LF +M+ G P+ +NTL+ +R+ + + EL+ M
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEM 596
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 304 bits (779), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 153/400 (38%), Positives = 238/400 (59%), Gaps = 6/400 (1%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA AL ++ GC+P+++TY +INGLC+ G +ALNL +M G E D V
Sbjct: 188 EAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE------ADVV 241
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
IY+T+ID LCK VD A L +M +K I PDV TY+S+I C ++A RL +M
Sbjct: 242 IYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM 301
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVVTF+ ++D K GK+ EA +L + MIQ + PN YN+L++GFC+ R+
Sbjct: 302 LERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL 361
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ A+++F M S C +V +Y+ LING+CK K++ + L+ +M +G+ VTY TL
Sbjct: 362 DEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTL 421
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
G F+ + A +F +M GV + Y T +DGLCKNG + +A+ +F L+ K
Sbjct: 422 IHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKM 481
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
E DI +Y+ + +G+CK+G+++ W+LF SL + DV+ YN MI C G ++A+
Sbjct: 482 EPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYT 541
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
LF+ M+ G PD +NTL+ +R+ + + EL+ M
Sbjct: 542 LFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEM 581
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 158/400 (39%), Positives = 235/400 (58%), Gaps = 6/400 (1%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
+A L ++ G +PN +TY ++N +C++G T +A+ L +M N K DAV
Sbjct: 211 DAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN------IKLDAV 264
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
Y+ IIDGLCK+G +D A L +M+ K D++TYN++I GFC A ++ +L +M
Sbjct: 265 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDM 324
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+ + + PNVVTFSV++D K GK+ EA QLL+ M+Q G+ PN YN+L+DGFC R+
Sbjct: 325 IKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRL 384
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
A ++ M S GC ++ +++ILINGYCK I+ L L+ EM +G+ VTYNTL
Sbjct: 385 EEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTL 444
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
G + ++E A KLF EM V D +Y+ +DGLC NG + +ALE+F + K
Sbjct: 445 VQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKM 504
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
ELDI Y +I G+C + ++ AW+LF SLP + D YNIMI LC + KA
Sbjct: 505 ELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADI 564
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
LF M +G APD + +N L+ + +++ + EL+ M
Sbjct: 565 LFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEM 604
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (769), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 149/400 (37%), Positives = 239/400 (59%), Gaps = 6/400 (1%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA L ++ GC+P+V+TY++++NG+CR+G T +AL+L +M N K D
Sbjct: 176 EAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN------VKADVF 229
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
Y+TIID LC++G +D A L +M+ K I VVTYNS++RG C A N+ L +M
Sbjct: 230 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 289
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+ + + PNV+TF+V++D K GK++EA++L + MI G+ PN YNTLMDG+C+ R+
Sbjct: 290 VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ A + M C ++ +++ LI GYC K ++ + ++ + +G+ VTY+ L
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSIL 409
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
G + +++ A +LF EM HGV D Y +DGLC NG + +ALE+F L+ K
Sbjct: 410 VQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKM 469
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
+L I Y+ +I+G+CK G+++ AW LF SLP + +V+TY +MI LC G + +A+
Sbjct: 470 DLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANI 529
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
L ME G AP+ +NTL+ +R+ + + +L+ M
Sbjct: 530 LLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEM 569
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 299 bits (766), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 156/400 (39%), Positives = 235/400 (58%), Gaps = 6/400 (1%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA L K+ +GC+PN +TY ++N +C++G T +A+ L +M N K DAV
Sbjct: 211 EAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN------IKLDAV 264
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
Y+ IIDGLCK G +D A L +M+ K I +++TYN +I GFC A ++ +L +M
Sbjct: 265 KYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDM 324
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+ + + PNVVTFSV++D K GK+ EA +L + MI G+ P+ Y +L+DGFC +
Sbjct: 325 IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHL 384
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
++A ++ M S GC N+ +++ILINGYCK I+ L L+ +M +G+ VTYNTL
Sbjct: 385 DKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTL 444
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
G E+ ++ A +LF EM V + Y+ +DGLC NG +ALE+F + K
Sbjct: 445 IQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKM 504
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
ELDI Y+ +I G+C + ++ AW+LF SLP + V TYNIMI LC G + +A
Sbjct: 505 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAEL 564
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
LF ME G APD +N L+ + + + +K V+L+ +
Sbjct: 565 LFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEEL 604
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (763), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 153/400 (38%), Positives = 237/400 (59%), Gaps = 6/400 (1%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA AL ++ GC+P+++TY ++NGLC+ G +AL+L ++M G E P V
Sbjct: 204 EAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIE------PGVV 257
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
IY TIID LC V+ A L +M +K I P+VVTYNS+IR C ++A RL +M
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVVTFS ++D K GK+ EA +L + MI+ + P+ F Y++L++GFC+ R+
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ AK +F M S C NV +Y+ LI G+CK K ++ + L+ EM +G+ VTY TL
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
G F+ + + A +F +M GV D Y +DGLC NG + AL +F L+ K
Sbjct: 438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKM 497
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
E DI +Y+ +I+G+CK+G+++ W+LF SL + +VVTY M+ C G ++A
Sbjct: 498 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADA 557
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
LF +M+ +G PD +NTL+ +R+ + + EL+ M
Sbjct: 558 LFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 597
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 297 bits (760), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 234/400 (58%), Gaps = 6/400 (1%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA AL ++ GC+P+++TY T++NGLC+ G +AL+L ++M G E D V
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE------ADVV 259
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
IY TIIDGLCK +D A L +M +K I PDV TY+S+I C ++A RL +M
Sbjct: 260 IYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM 319
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVVTFS ++D K GK+ EA +L + MI+ + P+ F Y++L++GFC+ R+
Sbjct: 320 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 379
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ AK +F M S C NV +YS LI G+CK K +E + L+ EM +G+ VTY TL
Sbjct: 380 DEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTL 439
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
G F+ + A +F +M GV + Y +DGLCKNG + +A+ +F L+
Sbjct: 440 IHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTM 499
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
E DI +Y+ +I+G+CK+G+++ WELF +L + +V+ YN MI C G ++A
Sbjct: 500 EPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADS 559
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
L M+ G P+ +NTL+ +R+ + EL+ M
Sbjct: 560 LLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEM 599
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (759), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/400 (38%), Positives = 238/400 (59%), Gaps = 6/400 (1%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA AL ++ GC+PN++TY ++NGLC+ G T +ALNL +M E D V
Sbjct: 208 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIE------ADVV 261
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
I+ TIID LCK VD A L +M+ K I P+VVTY+S+I C ++A +L +M
Sbjct: 262 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 321
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PN+VTF+ ++D K GK EA +L + MI+ + P+ F YN+L++GFC+ R+
Sbjct: 322 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRL 381
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
++AK++F M S C +V +Y+ LI G+CK+K +E L+ EM +G+ VTY TL
Sbjct: 382 DKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 441
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
GLF + A K+F +M GV D Y +DGLC NG + +ALE+F ++ +
Sbjct: 442 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 501
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
+LDI Y+ +I+G+CK+G++ W+LF SL + +VVTYN MI LC+ + +A+
Sbjct: 502 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 561
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
L M+ G P+ +NTL+ +R+ + + EL+ M
Sbjct: 562 LLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 601
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 296 bits (757), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 150/400 (37%), Positives = 238/400 (59%), Gaps = 6/400 (1%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA AL ++ A GC+P+++TY ++NGLC+ G T +A NL +M G E P +
Sbjct: 204 EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLE------PGVL 257
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
IY TIIDGLCK +D A L +M+ K I P+VVTY+S+I C ++A RL +M
Sbjct: 258 IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM 317
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + P+V TFS ++D K GK+ EA +L + M++ + P+ Y++L++GFC+ R+
Sbjct: 318 IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRL 377
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ AK++F M S C +V +Y+ LI G+CK K +E + ++ EM +G+ VTYN L
Sbjct: 378 DEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 437
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
GLF+ + A ++F EM GV + Y T +DGLCKNG + +A+ +F L+ K
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
E I +Y+ +I+G+CK+G+++ W+LF +L + DVV YN MI C G ++A
Sbjct: 498 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADA 557
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
LF +M+ G P+ +NTL+ +R+ + EL+ M
Sbjct: 558 LFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 597
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/400 (37%), Positives = 236/400 (59%), Gaps = 6/400 (1%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA AL ++ GC+PN++TY ++NGLC+ G +A NL +M E D V
Sbjct: 133 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE------ADVV 186
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
I+ TIID LCK VD A L +M+ K I P+VVTY+S+I C ++A +L +M
Sbjct: 187 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 246
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PN+VTF+ ++D K GK EA +L + MI+ + P+ F YN+L++GFC+ R+
Sbjct: 247 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRL 306
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
++AK++F M S C ++ +Y+ LI G+CK+K +E L+ EM +G+ VTY TL
Sbjct: 307 DKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 366
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
GLF + A K+F +M GV D Y +DGLC NG + +ALE+F ++ +
Sbjct: 367 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 426
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
+LDI Y+ +I+G+CK+G++ W+LF SL + +VVTYN MI LC+ + +A+
Sbjct: 427 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 486
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
L M+ G PD +NTL+ +R+ + + EL+ M
Sbjct: 487 LLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 526
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 405 | ||||||
| 359479583 | 627 | PREDICTED: pentatricopeptide repeat-cont | 0.876 | 0.566 | 0.534 | 1e-121 | |
| 449529622 | 618 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.644 | 0.507 | 1e-117 | |
| 449520323 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.975 | 0.652 | 0.504 | 1e-114 | |
| 449520325 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.657 | 0.480 | 1e-112 | |
| 449462477 | 597 | PREDICTED: pentatricopeptide repeat-cont | 0.977 | 0.663 | 0.495 | 1e-110 | |
| 255559961 | 628 | pentatricopeptide repeat-containing prot | 0.970 | 0.625 | 0.495 | 1e-109 | |
| 449462479 | 580 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.686 | 0.442 | 9e-96 | |
| 449491568 | 412 | PREDICTED: pentatricopeptide repeat-cont | 0.935 | 0.919 | 0.460 | 3e-93 | |
| 449444222 | 588 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.676 | 0.446 | 2e-90 | |
| 224130828 | 617 | predicted protein [Populus trichocarpa] | 0.972 | 0.638 | 0.42 | 3e-88 |
| >gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera] gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/404 (53%), Positives = 284/404 (70%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA L K+ G PNV+TY TL+NGLC TG+T++A+ L EEM+NGNG FGV KP+ V
Sbjct: 180 EATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLV 239
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
Y TIID LCK+G +DK KEL L+MK + I+PDVV Y+S+I G C+ AK LF EM
Sbjct: 240 CYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEM 299
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+D+GV PNVVTF+V++D LCK GKMEEA+ LL+LMIQ G P+ F YNTL+DGFCL GR+
Sbjct: 300 VDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRI 359
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ A++LFVSMES G + + SY++LINGYCK+ + A LY EM+ K I PTV+TYNTL
Sbjct: 360 DDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTL 419
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
GLF +V A+ LF EM+ H + ++ Y +DGLCKN ++ EA+ELF L
Sbjct: 420 LTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDF 479
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
+ I+ ++CLIDGLCK+ +++IA ELF+ L L +V+TY +MIH LC G+++ A D
Sbjct: 480 QPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKD 539
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN 405
LFL ME KG AP+ V FNTLM G +N+E KVVELL M E++
Sbjct: 540 LFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKD 583
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/404 (50%), Positives = 286/404 (70%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA LF +++ GC PN +TY TLI GLC+TG+ +AL L +EM+N ++GV CKP +
Sbjct: 179 EATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVI 238
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
Y+ IIDGLCK G D+AKEL +MK + + PDV++Y+++I GFC A +++K LF EM
Sbjct: 239 TYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEM 298
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+DQGVQP++VTFSV++D LCK GK+ EA +LLE+MIQ G+ PN YN+L+DGFC+ G +
Sbjct: 299 VDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDL 358
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
N A+ELF+SM S G + + SY+ LINGYCK +++ A++LY+EML G P V TY TL
Sbjct: 359 NSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTL 418
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
GLF+ +V A KLF M+ +GV+A++ Y F+DGLCKN + EA+ELF L+
Sbjct: 419 LKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNF 478
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
+L+I +YSCLIDGLCK+G+L+ AWELF L + L DVVTYNIMIH C G++D A+
Sbjct: 479 KLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANI 538
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN 405
LF ME G PD +A+NTL+ G N+ +V++LLH+M +++
Sbjct: 539 LFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKD 582
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/404 (50%), Positives = 278/404 (68%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
+AA LFT+++ GC PN ITY TL+ GLCRTG+ +AL L +EM+N + +G+ KP +
Sbjct: 184 KAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVI 243
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
Y+ IID LCK+ D+A++L +MK + + P V++Y S+I GFC EAKRLF EM
Sbjct: 244 SYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEM 303
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
++QGVQPNVVTF+V++D LCK GK+ EA LLE+MIQ G+ PN YN+L++GFCL G +
Sbjct: 304 VNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDL 363
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
N A+ELFVSM S GC+ +V Y++LINGYCK ++E A+ LY+ ML G +P V TY L
Sbjct: 364 NSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGAL 423
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
GLF+ +V A KLF M+ +G+ D + Y F++GLCKNG + EA+ELF L+
Sbjct: 424 LTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNI 483
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
+LDI ++CLIDGLCK+G+L+ AWELF LP+ L DVVTYNIMIH C G++ KA+
Sbjct: 484 KLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANI 543
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN 405
LF ME G PD + + TL+ G + + KVVELLH M +R+
Sbjct: 544 LFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRD 587
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/404 (48%), Positives = 283/404 (70%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA LF +++ GC P+V+TY TLI GLC TG+ +AL L +EM+N + + CKP+ +
Sbjct: 157 EATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVI 216
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
Y I+DGLCK G D+AK+L +MK + + P +++YNS+I GFC A E+KRL EM
Sbjct: 217 TYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEM 276
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+DQG+QP++VTF+V++D LCK GK+ EA +LL +MI+ G+ P+ YN+L++GFC+ G +
Sbjct: 277 LDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDL 336
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
N A+ELFVSM S GC+ +V SY++LINGY K ++E A+ LY+EML G +P V+TY++L
Sbjct: 337 NSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSL 396
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
G+F +V+ A KLF M+ HG+A +++ Y F+DGLCKN + EA++LF L+
Sbjct: 397 LKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNF 456
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
+L+I + +CLIDGLCK+G+L+ AWELF L +VVTY IMIH C +G++DKA+
Sbjct: 457 KLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANV 516
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN 405
L MEA G PD + +NTLM G +N+ +VV+LLHRM +++
Sbjct: 517 LIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKD 560
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/404 (49%), Positives = 275/404 (68%), Gaps = 8/404 (1%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
+AA LFT+++ GC PN ITY TL+ GLCRTG+ +AL L +EM+N + +G+ KP +
Sbjct: 184 KAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVI 243
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
Y+ IID LCK+ D+A++L +MK + + P V++Y S++ EAKRLF EM
Sbjct: 244 SYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMW--------EEAKRLFNEM 295
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
++QGVQPNVVTF+V++D LCK GK+ EA LLE+MIQ G+ PN YN+L++GFCL G +
Sbjct: 296 VNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDL 355
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
N A+ELFVSM S GC+ +V Y++LINGYCK ++E A+ LY+ ML G +P V TY L
Sbjct: 356 NSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGAL 415
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
GLF+ +V A KLF M+ +G+ D + Y F++GLCKNG + EA+ELF L+
Sbjct: 416 LTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNI 475
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
+LDI ++CLIDGLCK+G+L+ AWELF LP+ L DVVTYNIMIH C G++ KA+
Sbjct: 476 KLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANI 535
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN 405
LF ME G PD + + TL+ G + + KVVELLH M +R+
Sbjct: 536 LFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRD 579
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/406 (49%), Positives = 277/406 (68%), Gaps = 13/406 (3%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA +F + F C P+ IT LI+GLCRTG+T AL L E MINGN +FG+ CKP V
Sbjct: 195 EAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVV 254
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
Y+ IID LCK+G V++AKE ++MK+K I P+VVTY S++ G C A++ EAKRLFIEM
Sbjct: 255 SYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEM 314
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+D G+ P+VVTFSV++ LCK GK++EAS L +LM+Q V P+ YN L++G+CL G V
Sbjct: 315 VDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMV 374
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ K++F+SM + C+H+ SYSIL+ YCK+ E+ GA+ LY EM+ +GI+PTV+TY+
Sbjct: 375 DEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYS-- 432
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYR---TFIDGLCKNGYIVEALELFRTLRI 298
+V A KLF E+Q + D+ +Y ++DGLCKNG + EAL++F L
Sbjct: 433 --------KVGDARKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLEN 484
Query: 299 LKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDK 358
K ++ ++ LI+G+C+S +L+IAWELF+ L L DVVTY IMI+ LC G+ K
Sbjct: 485 CKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQK 544
Query: 359 AHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404
A+DLFL+ME KG AP+ V FNTLM G N+E K+VELLH+M R
Sbjct: 545 AYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERPKIVELLHKMAAR 590
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 356 bits (914), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 186/420 (44%), Positives = 268/420 (63%), Gaps = 22/420 (5%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
E A F + G PN++TY+TLI GLC A LF M + G C PD V
Sbjct: 122 EGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM----QKLG--CTPDVV 175
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDK------NINPDVVTYNSVIRGFCYANDSNEAK 115
Y T+I GLC G ++ A +L +M + N P+V+TYN ++ G C +EAK
Sbjct: 176 TYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAK 235
Query: 116 RLFIEM----------MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNA 165
+LF EM +DQG+QP++VTF+V++D LCK GK+ EA +LL +MI+ G+ P+
Sbjct: 236 QLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDL 295
Query: 166 FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSE 225
YN+L++GFC+ G +N A+ELFVSM S GC+ +V SY++LINGY K ++E A+ LY+E
Sbjct: 296 VTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNE 355
Query: 226 MLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285
ML G +P V+TY++L G+F +V+ A KLF M+ HG+A +++ Y F+DGLCKN
Sbjct: 356 MLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDC 415
Query: 286 IVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNI 345
+ EA++LF L+ +L+I + +CLIDGLCK+G+L+ AWELF L +VVTY I
Sbjct: 416 LFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTI 475
Query: 346 MIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN 405
MIH C +G++DKA+ L MEA G PD + +NTLM G +N+ +VV+LLHRM +++
Sbjct: 476 MIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKD 535
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 187/406 (46%), Positives = 259/406 (63%), Gaps = 27/406 (6%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
E A T + G P+++TY+TLI GLCR H I +V
Sbjct: 28 EGLAAMTGILRRGYIPDIVTYNTLIKGLCRV-HRI-----------------------SV 63
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
IIDGLCK G D+AKE+ +MK + + P+V++Y+S++ GFC A E+KRLF EM
Sbjct: 64 ATCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEM 123
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+DQGVQPN+V F+V++D LCK GK+ EA +LLE+ IQ G+ + YN+L+DGFC G +
Sbjct: 124 VDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDL 183
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ A++LF+SM S GC+HN SY+ILINGYCK ++E A++LY+EM G +P V TY+TL
Sbjct: 184 SSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTL 243
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
GL + +V A KLF M+ G++ D+ Y F+DGLCKNG + EA+ELF L+
Sbjct: 244 LTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNF 303
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
+LD SYS LIDGLCK+G+++IAWE F L + L +VVT NIMIH C ++DKA+
Sbjct: 304 KLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANI 363
Query: 362 LFLDMEA---KGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404
LF ME G PD + +NTL+ G +N+ +VV LLH+M +R
Sbjct: 364 LFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKMFKR 409
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 183/410 (44%), Positives = 255/410 (62%), Gaps = 12/410 (2%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
E A + G P+V+T++TLI GLC I A LF M + G C P+ V
Sbjct: 144 EGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRM----QKLG--CTPNVV 197
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDK------NINPDVVTYNSVIRGFCYANDSNEAK 115
Y T+I GLC G ++ A + +M + N P+V++Y+ +I G C + EA
Sbjct: 198 TYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAI 257
Query: 116 RLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF 175
LF EM+DQGVQPNVVTFSV++D LCK G++ +A +LLE+MIQIG+ PN F Y +L+ GF
Sbjct: 258 CLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGF 317
Query: 176 CLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTV 235
CL G +N AKELFVSM S G + +V SY++LINGYCK ++E A+ L++EML G+ P V
Sbjct: 318 CLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDV 377
Query: 236 VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRT 295
T L LF +V+ A +LF ++ + + D F+DGLCKNGYI EA++LF
Sbjct: 378 KTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNE 437
Query: 296 LRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGK 355
L +LDI ++ CLIDGLCK+G+L+ AWELF L + D + Y+ MIH C G+
Sbjct: 438 LESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQ 497
Query: 356 MDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN 405
+DKA+ LF ME G +PD + ++ LM G +N+ KVV+LLHRM E++
Sbjct: 498 VDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKD 547
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa] gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 168/400 (42%), Positives = 249/400 (62%), Gaps = 6/400 (1%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA LF ++ G EPNVI+Y+T+INGLC+ G+TI+A+ +F +M G KP+ V
Sbjct: 184 EAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRG------KPNVV 237
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
Y TIID LCK+ V++A E L +M D+ I PDVVTYN+++ GFC NEA RLF EM
Sbjct: 238 TYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEM 297
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+ + V P+ VTF++++D LCK G + EA + E M + G PNA+ YN LMDG+CL ++
Sbjct: 298 VGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQM 357
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ A ++ M GC N+ SY+ILINGYCK+K + A L SEM K + P VTY+TL
Sbjct: 358 DEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTL 417
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
GL ++ + A LF EM G+ D AY +DG CK+G++ EAL+L + + +
Sbjct: 418 MQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRI 477
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
+ +I Y+ LI G+ +G+L++A ELF L + D+ TYN+MI L +G D+A++
Sbjct: 478 KPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYE 537
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
F ME G PD ++N ++ G ++N ++S ++L+ M
Sbjct: 538 FFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEM 577
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 405 | ||||||
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.970 | 0.610 | 0.399 | 9e-77 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.970 | 0.640 | 0.386 | 1.1e-76 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.970 | 0.624 | 0.399 | 1.9e-76 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.970 | 0.616 | 0.394 | 1.3e-75 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.970 | 0.623 | 0.389 | 5.7e-75 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.970 | 0.623 | 0.381 | 1.2e-74 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.970 | 0.619 | 0.386 | 1.9e-74 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.965 | 0.621 | 0.385 | 5.9e-73 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.970 | 0.634 | 0.376 | 6.7e-72 | |
| TAIR|locus:2195047 | 621 | AT1G12620 [Arabidopsis thalian | 0.970 | 0.632 | 0.376 | 1.8e-71 |
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 160/401 (39%), Positives = 238/401 (59%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
+A L ++ G +PN +TY ++N +C++G T +A+ L +M N K DAV
Sbjct: 211 DAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN------IKLDAV 264
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
Y+ IIDGLCK+G +D A L +M+ K D++TYN++I GFC A ++ +L +M
Sbjct: 265 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDM 324
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+ + + PNVVTFSV++D K GK+ EA QLL+ M+Q G+ PN YN+L+DGFC R+
Sbjct: 325 IKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRL 384
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
A ++ M S GC ++ +++ILINGYCK I+ L L+ EM +G+ VTYNTL
Sbjct: 385 EEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTL 444
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
G + ++E A KLF EM V D +Y+ +DGLC NG + +ALE+F + K
Sbjct: 445 VQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKM 504
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLP-RGVLIADVVTYNIMIHALCADGKMDKAH 360
ELDI Y +I G+C + ++ AW+LF SLP +GV + D YNIMI LC + KA
Sbjct: 505 ELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKL-DARAYNIMISELCRKDSLSKAD 563
Query: 361 DLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
LF M +G APD + +N L+ + +++ + EL+ M
Sbjct: 564 ILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEM 604
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
Identities = 155/401 (38%), Positives = 240/401 (59%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA AL ++ GC+P+++TY +INGLC+ G +ALNL +M G E D V
Sbjct: 188 EAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIE------ADVV 241
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
IY+T+ID LCK VD A L +M +K I PDV TY+S+I C ++A RL +M
Sbjct: 242 IYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM 301
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVVTF+ ++D K GK+ EA +L + MIQ + PN YN+L++GFC+ R+
Sbjct: 302 LERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL 361
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ A+++F M S C +V +Y+ LING+CK K++ + L+ +M +G+ VTY TL
Sbjct: 362 DEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTL 421
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
G F+ + A +F +M GV + Y T +DGLCKNG + +A+ +F L+ K
Sbjct: 422 IHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKM 481
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLP-RGVLIADVVTYNIMIHALCADGKMDKAH 360
E DI +Y+ + +G+CK+G+++ W+LF SL +GV DV+ YN MI C G ++A+
Sbjct: 482 EPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVK-PDVIAYNTMISGFCKKGLKEEAY 540
Query: 361 DLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
LF+ M+ G PD +NTL+ +R+ + + EL+ M
Sbjct: 541 TLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEM 581
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 160/401 (39%), Positives = 242/401 (60%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA AL ++ A GC+P++ TY T++NGLC+ G +AL+L ++M G E D V
Sbjct: 203 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIE------ADVV 256
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
IYTTIID LC V+ A L +M +K I P+VVTYNS+IR C ++A RL +M
Sbjct: 257 IYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 316
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVVTFS ++D K GK+ EA +L + MI+ + P+ F Y++L++GFC+ R+
Sbjct: 317 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 376
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ AK +F M S C NV +Y+ LI G+CK K +E + L+ EM +G+ VTYNTL
Sbjct: 377 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 436
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
GLF+ + A K+F +M GV D Y +DGLCK G + +AL +F L+ K
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLP-RGVLIADVVTYNIMIHALCADGKMDKAH 360
E DI +Y+ +I+G+CK+G+++ W+LF SL +GV +V+ Y MI C G ++A
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK-PNVIIYTTMISGFCRKGLKEEAD 555
Query: 361 DLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
LF +M+ G P+ +NTL+ +R+ + + EL+ M
Sbjct: 556 ALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEM 596
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 158/401 (39%), Positives = 237/401 (59%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA L K+ +GC+PN +TY ++N +C++G T +A+ L +M N K DAV
Sbjct: 211 EAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERN------IKLDAV 264
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
Y+ IIDGLCK G +D A L +M+ K I +++TYN +I GFC A ++ +L +M
Sbjct: 265 KYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDM 324
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+ + + PNVVTFSV++D K GK+ EA +L + MI G+ P+ Y +L+DGFC +
Sbjct: 325 IKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHL 384
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
++A ++ M S GC N+ +++ILINGYCK I+ L L+ +M +G+ VTYNTL
Sbjct: 385 DKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTL 444
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
G E+ ++ A +LF EM V + Y+ +DGLC NG +ALE+F + K
Sbjct: 445 IQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKM 504
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLP-RGVLIADVVTYNIMIHALCADGKMDKAH 360
ELDI Y+ +I G+C + ++ AW+LF SLP +GV V TYNIMI LC G + +A
Sbjct: 505 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK-PGVKTYNIMIGGLCKKGPLSEAE 563
Query: 361 DLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
LF ME G APD +N L+ + + + +K V+L+ +
Sbjct: 564 LLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEEL 604
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 156/401 (38%), Positives = 240/401 (59%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA AL ++ GC+P+++TY ++NGLC+ G +AL+L ++M G E GVV
Sbjct: 204 EAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVV------ 257
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
IY TIID LC V+ A L +M +K I P+VVTYNS+IR C ++A RL +M
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVVTFS ++D K GK+ EA +L + MI+ + P+ F Y++L++GFC+ R+
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ AK +F M S C NV +Y+ LI G+CK K ++ + L+ EM +G+ VTY TL
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
G F+ + + A +F +M GV D Y +DGLC NG + AL +F L+ K
Sbjct: 438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKM 497
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLP-RGVLIADVVTYNIMIHALCADGKMDKAH 360
E DI +Y+ +I+G+CK+G+++ W+LF SL +GV +VVTY M+ C G ++A
Sbjct: 498 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK-PNVVTYTTMMSGFCRKGLKEEAD 556
Query: 361 DLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
LF +M+ +G PD +NTL+ +R+ + + EL+ M
Sbjct: 557 ALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 597
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 153/401 (38%), Positives = 241/401 (60%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA AL ++ A GC+P+++TY ++NGLC+ G T +A NL +M G E GV+
Sbjct: 204 EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVL------ 257
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
IY TIIDGLCK +D A L +M+ K I P+VVTY+S+I C ++A RL +M
Sbjct: 258 IYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDM 317
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + P+V TFS ++D K GK+ EA +L + M++ + P+ Y++L++GFC+ R+
Sbjct: 318 IERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRL 377
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ AK++F M S C +V +Y+ LI G+CK K +E + ++ EM +G+ VTYN L
Sbjct: 378 DEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 437
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
GLF+ + A ++F EM GV + Y T +DGLCKNG + +A+ +F L+ K
Sbjct: 438 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLP-RGVLIADVVTYNIMIHALCADGKMDKAH 360
E I +Y+ +I+G+CK+G+++ W+LF +L +GV DVV YN MI C G ++A
Sbjct: 498 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVK-PDVVAYNTMISGFCRKGSKEEAD 556
Query: 361 DLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
LF +M+ G P+ +NTL+ +R+ + EL+ M
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM 597
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 155/401 (38%), Positives = 242/401 (60%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA AL ++ GC+PN++TY ++NGLC+ G T +ALNL +M E + + D V
Sbjct: 208 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM-----EAAKI-EADVV 261
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
I+ TIID LCK VD A L +M+ K I P+VVTY+S+I C ++A +L +M
Sbjct: 262 IFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM 321
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PN+VTF+ ++D K GK EA +L + MI+ + P+ F YN+L++GFC+ R+
Sbjct: 322 IEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRL 381
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
++AK++F M S C +V +Y+ LI G+CK+K +E L+ EM +G+ VTY TL
Sbjct: 382 DKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTL 441
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
GLF + A K+F +M GV D Y +DGLC NG + +ALE+F ++ +
Sbjct: 442 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 501
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLP-RGVLIADVVTYNIMIHALCADGKMDKAH 360
+LDI Y+ +I+G+CK+G++ W+LF SL +GV +VVTYN MI LC+ + +A+
Sbjct: 502 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVK-PNVVTYNTMISGLCSKRLLQEAY 560
Query: 361 DLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
L M+ G P+ +NTL+ +R+ + + EL+ M
Sbjct: 561 ALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 601
|
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| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 154/400 (38%), Positives = 237/400 (59%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA AL ++ GC+P+++TY T++NGLC+ G +ALNL +M E + K + V
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKM-----EAARI-KANVV 259
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
I+ TIID LCK V+ A +L +M+ K I P+VVTYNS+I C ++A RL M
Sbjct: 260 IFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNM 319
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+++ + PNVVTF+ ++D K GK+ EA +L E MIQ + P+ YN L++GFC+ R+
Sbjct: 320 LEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRL 379
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ AK++F M S C N+ +Y+ LING+CK K +E + L+ EM +G+ VTY T+
Sbjct: 380 DEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTI 439
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
G F+ + A +F +M + V D Y + GLC G + AL +F+ L+ +
Sbjct: 440 IQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEM 499
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
EL+I Y+ +I+G+CK+G++ AW+LF SL + DVVTYN MI LC+ + +A D
Sbjct: 500 ELNIFIYNTMIEGMCKAGKVGEAWDLFCSLS---IKPDVVTYNTMISGLCSKRLLQEADD 556
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
LF M+ G P+ +NTL+ +R+ + + EL+ M
Sbjct: 557 LFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEM 596
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| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 151/401 (37%), Positives = 232/401 (57%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
EA L ++ +G +P+ +TY ++N LC++G++ +AL+LF +M N K V
Sbjct: 193 EALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERN------IKASVV 246
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
Y+ +ID LCK+G D A L +M+ K I DVVTY+S+I G C ++ ++ EM
Sbjct: 247 QYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM 306
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+ + + P+VVTFS ++D K GK+ EA +L MI G+ P+ YN+L+DGFC +
Sbjct: 307 IGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCL 366
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
+ A ++F M S GC+ ++ +YSILIN YCK K ++ + L+ E+ SKG+ P +TYNTL
Sbjct: 367 HEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTL 426
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
+G + ++ A +LF EM GV Y +DGLC NG + +ALE+F ++ +
Sbjct: 427 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRM 486
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLP-RGVLIADVVTYNIMIHALCADGKMDKAH 360
L I Y+ +I G+C + ++ AW LF SL +GV DVVTYN+MI LC G + +A
Sbjct: 487 TLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVK-PDVVTYNVMIGGLCKKGSLSEAD 545
Query: 361 DLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
LF M+ G PD +N L+ + + VEL+ M
Sbjct: 546 MLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM 586
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| TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 151/401 (37%), Positives = 234/401 (58%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV 61
+A L ++ G +PN +TY ++ +C++G T +A+ L +M K DAV
Sbjct: 195 DAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERK------IKLDAV 248
Query: 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
Y+ IIDGLCK+G +D A L +M+ K D++ Y ++IRGFCYA ++ +L +M
Sbjct: 249 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDM 308
Query: 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181
+ + + P+VV FS ++D K GK+ EA +L + MIQ G+ P+ Y +L+DGFC ++
Sbjct: 309 IKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQL 368
Query: 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241
++A + M S GC N+ +++ILINGYCK I+ L L+ +M +G+ VTYNTL
Sbjct: 369 DKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTL 428
Query: 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301
G E+ ++E A +LF EM V D +Y+ +DGLC NG +ALE+F + K
Sbjct: 429 IQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKM 488
Query: 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLP-RGVLIADVVTYNIMIHALCADGKMDKAH 360
ELDI Y+ +I G+C + ++ AW+LF SLP +GV DV TYNIMI LC G + +A
Sbjct: 489 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK-PDVKTYNIMIGGLCKKGSLSEAD 547
Query: 361 DLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401
LF ME G +P+ +N L+ + + +K +L+ +
Sbjct: 548 LLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEI 588
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00023872001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (660 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 405 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-34 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-31 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-28 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-22 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-20 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-20 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-19 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-17 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.003 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 82/309 (26%), Positives = 144/309 (46%), Gaps = 15/309 (4%)
Query: 14 GCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKE 73
G E NV T+ LI+G R G A + M + N KPD V++ +I +
Sbjct: 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN------VKPDRVVFNALISACGQS 555
Query: 74 GFVDKAKELLLQMK--DKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ--PN 129
G VD+A ++L +MK I+PD +T ++++ A + AK ++ + + ++ P
Sbjct: 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615
Query: 130 VVTFSVIMDELC-KNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELF 188
V T +V C + G + A + + M + GV+P+ ++ L+D G +++A E+
Sbjct: 616 VYTIAV---NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672
Query: 189 VSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEI 248
G K SYS L+ K + AL LY ++ S ++PTV T N L L E
Sbjct: 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
Query: 249 HQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSY 308
+Q+ +A ++ EM+R G+ +T Y + + L+L + + ++
Sbjct: 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792
Query: 309 SCLIDGLCK 317
C+ GLC
Sbjct: 793 RCIT-GLCL 800
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 6e-31
Identities = 84/332 (25%), Positives = 156/332 (46%), Gaps = 7/332 (2%)
Query: 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKR 116
K D +YTT+I K G VD E+ +M + + +V T+ ++I G A +A
Sbjct: 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528
Query: 117 LFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG--VRPNAFVYNTLMDG 174
+ M + V+P+ V F+ ++ ++G ++ A +L M + P+ LM
Sbjct: 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588
Query: 175 FCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPT 234
G+V+RAKE++ + K Y+I +N + + + ALS+Y +M KG+KP
Sbjct: 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
Query: 235 VVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFR 294
V ++ L +++AF++ + ++ G+ T +Y + + +ALEL+
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708
Query: 295 TLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADG 354
++ +K + + + LI LC+ +L A E+ + R L + +TY+I++ A
Sbjct: 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768
Query: 355 KMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCI 386
D DL +AK D + N +M CI
Sbjct: 769 DADVGLDLL--SQAKE---DGIKPNLVMCRCI 795
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-28
Identities = 87/402 (21%), Positives = 167/402 (41%), Gaps = 30/402 (7%)
Query: 18 NVITYSTLINGLCRTGHTIVALNLFEEM----------INGNGEFGVVCK-----PDAVI 62
Y N L R G ++L E+M I + +F CK +A
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIY-HAKFFKACKKQRAVKEAFR 427
Query: 63 YTTIIDGLCKEGF------------VDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAND 110
+ +I F +D A +L +++ + D Y ++I +
Sbjct: 428 FAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487
Query: 111 SNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNT 170
+ +F EM++ GV+ NV TF ++D + G++ +A +M V+P+ V+N
Sbjct: 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547
Query: 171 LMDGFCLTGRVNRAKELFVSM--ESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228
L+ +G V+RA ++ M E+ + + L+ +++ A +Y +
Sbjct: 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607
Query: 229 KGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE 288
IK T Y + + A ++D+M++ GV D + +D G + +
Sbjct: 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667
Query: 289 ALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIH 348
A E+ + R +L SYS L+ + K A EL+ + L V T N +I
Sbjct: 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727
Query: 349 ALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNE 390
ALC ++ KA ++ +M+ G+ P+ + ++ L++ R ++
Sbjct: 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 7e-22
Identities = 63/276 (22%), Positives = 129/276 (46%), Gaps = 10/276 (3%)
Query: 128 PNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKEL 187
P + TF+++M + ++ A ++L L+ + G++ + +Y TL+ +G+V+ E+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 188 FVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFE 247
F M + G + NV ++ LI+G + ++ A Y M SK +KP V +N L +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 248 IHQVERAFKLFDEM--QRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDI 305
V+RAF + EM + H + D + G + A E+++ + E +I
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH----EYNI 610
Query: 306 RS----YSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361
+ Y+ ++ + G A ++ + + + D V ++ ++ G +DKA +
Sbjct: 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 362 LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVEL 397
+ D +G+ V++++LM C K +EL
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 2e-20
Identities = 79/315 (25%), Positives = 136/315 (43%), Gaps = 50/315 (15%)
Query: 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGE-----FGVVCKP------------ 58
E N+ ++ T+I GL G+ A LF EM + F V+ +
Sbjct: 186 ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245
Query: 59 ------------DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFC 106
D + +ID K G ++ A+ + M +K V +NS++ G+
Sbjct: 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT----TVAWNSMLAGYA 301
Query: 107 YANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAF 166
S EA L+ EM D GV + TFS+++ + +E A Q +I+ G P
Sbjct: 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDI 360
Query: 167 VYNT-LMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSE 225
V NT L+D + GR+ A+ +F M + N+ S++ LI GY + A+ ++
Sbjct: 361 VANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFER 416
Query: 226 MLSKGIKPTVVTYNTL-----FIGLFEIHQVERAFKLFDEMQR-HGVAADTWAYRTFIDG 279
M+++G+ P VT+ + + GL E+ +++F M H + Y I+
Sbjct: 417 MIAEGVAPNHVTFLAVLSACRYSGL-----SEQGWEIFQSMSENHRIKPRAMHYACMIEL 471
Query: 280 LCKNGYIVEALELFR 294
L + G + EA + R
Sbjct: 472 LGREGLLDEAYAMIR 486
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 2e-20
Identities = 91/385 (23%), Positives = 157/385 (40%), Gaps = 54/385 (14%)
Query: 2 EAAALFTKLKA-FGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDA 60
EA LF L+A TY L+ ++ + + E PD
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE------PDQ 158
Query: 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIE 120
+ ++ K G + A+ L +M ++N+ ++ ++I G A + EA LF E
Sbjct: 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAFALFRE 214
Query: 121 MMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180
M + G TF V++ G QL +++ GV + FV L+D + G
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274
Query: 181 VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNT 240
+ A+ +F M + +++ ++ GY + E AL LY EM G+ T++
Sbjct: 275 IEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330
Query: 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK 300
+ I +F R L Q H GL + G+
Sbjct: 331 M-IRIF-----SRLALLEHAKQAHA-------------GLIRTGF--------------- 356
Query: 301 CELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAH 360
LDI + + L+D K GR++ A +F +PR +++++N +I G+ KA
Sbjct: 357 -PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAV 411
Query: 361 DLFLDMEAKGVAPDCVAFNTLMLGC 385
++F M A+GVAP+ V F ++ C
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSAC 436
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 1e-19
Identities = 93/407 (22%), Positives = 170/407 (41%), Gaps = 63/407 (15%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKP--- 58
E LF ++ +P+++T +++I A L + G G V K
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVI----------SACELLGDERLGREMHGYVVKTGFA 320
Query: 59 -DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRL 117
D + ++I G +A+++ +M+ K D V++ ++I G+ ++A
Sbjct: 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALET 376
Query: 118 FIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177
+ M V P+ +T + ++ G ++ +L EL + G+ V N L++ +
Sbjct: 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436
Query: 178 TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVT 237
+++A E+F ++ + +V S++ +I G N AL + +ML +KP VT
Sbjct: 437 CKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVT 491
Query: 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLR 297
I A E+ H RT G+ +G++ AL
Sbjct: 492 ----LIAALSACARIGALMCGKEIHAH-------VLRT---GIGFDGFLPNAL------- 530
Query: 298 ILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMD 357
+D + GR+ AW F+S + DVV++NI++ A GK
Sbjct: 531 --------------LDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGS 571
Query: 358 KAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404
A +LF M GV PD V F +L+ C R+ ++ +E H M+E+
Sbjct: 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 2e-18
Identities = 64/276 (23%), Positives = 123/276 (44%), Gaps = 52/276 (18%)
Query: 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIE 120
V+ +I+ K +DKA E+ + +K DV+++ S+I G N EA +F
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEA-LIFFR 479
Query: 121 MMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180
M ++PN VT + + G + ++ +++ G+ + F+ N L+D + GR
Sbjct: 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
Query: 181 VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNT 240
+N A F S + +V S++IL+ GY + + A+ L++ M+ G+ P
Sbjct: 540 MNYAWNQFNS-----HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP------- 587
Query: 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLC---KNGYIVEALELFRTLR 297
DE+ TFI LC ++G + + LE F ++
Sbjct: 588 ------------------DEV-------------TFISLLCACSRSGMVTQGLEYFHSME 616
Query: 298 I-LKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLP 332
+++ Y+C++D L ++G+L A+ + +P
Sbjct: 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 1e-17
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFC 106
PD V Y T+IDG CK+G V++A +L +MK + I P+V TY+ +I G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 5e-17
Identities = 82/347 (23%), Positives = 138/347 (39%), Gaps = 57/347 (16%)
Query: 99 NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEA-----SQLL 153
NS +R C +A +L M + V + + V + LC+ + E S+ L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAY-VALFRLCEWKRAVEEGSRVCSRAL 113
Query: 154 ELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN 213
+GVR + N ++ F G + A +F M + ++FS+++L+ GY K
Sbjct: 114 SSHPSLGVR----LGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKA 165
Query: 214 KEIEGALSLYSEMLSKGIKPTVVTY----------------------------------- 238
+ AL LY ML G++P V T+
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225
Query: 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRI 298
N L + V A +FD M R D ++ I G +NG +E LELF T+R
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRE 281
Query: 299 LKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDK 358
L + D+ + + +I G ++ E+ + + DV N +I + G +
Sbjct: 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341
Query: 359 AHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN 405
A +F ME K D V++ ++ G +N K +E M++ N
Sbjct: 342 AEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDN 384
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.8 bits (180), Expect = 1e-16
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 93 PDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK 142
PDVVTYN++I G+C EA +LF EM +G++PNV T+S+++D LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 4e-16
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 163 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK 212
P+ YNTL+DG+C G+V A +LF M+ G K NV++YSILI+G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 9e-16
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 199 NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGL 245
+V +Y+ LI+GYCK ++E AL L++EM +GIKP V TY+ L GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 3e-15
Identities = 61/272 (22%), Positives = 118/272 (43%), Gaps = 34/272 (12%)
Query: 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81
Y+ +N + G AL+++++M + GV KPD V ++ ++D G +DKA E
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMK----KKGV--KPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141
+L + + I V+Y+S++ A + +A L+ ++ ++P V T + ++ LC
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730
Query: 142 KNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVF 201
+ ++ +A ++L M ++G+ PN Y+ L+ + +L + G K N+
Sbjct: 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790
Query: 202 SYSILINGYCK------------------------NKEIEGALSLYSEMLSKGIKPTVVT 237
+ G C NK AL +Y E +S G PT+
Sbjct: 791 MCRCIT-GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849
Query: 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD 269
+ + L H +L + + G++AD
Sbjct: 850 LSQVLGCLQLPHDATLRNRLIENL---GISAD 878
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 5e-15
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 128 PNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFC 176
P+VVT++ ++D CK GK+EEA +L M + G++PN + Y+ L+DG C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 2e-14
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 233 PTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK 282
P VVTYNTL G + +VE A KLF+EM++ G+ + + Y IDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 7e-14
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 339 DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGC 385
DVVTYN +I C GK+++A LF +M+ +G+ P+ ++ L+ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 2e-13
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK 72
P+V+TY+TLI+G C+ G AL LF EM KP+ Y+ +IDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG------IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 5e-12
Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 12/180 (6%)
Query: 233 PTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALEL 292
PT+ T+N L ++ A ++ +Q G+ AD Y T I K+G + E+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 293 FRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIA-----DVVTYNIMI 347
F + E ++ ++ LIDG ++G++ A+ + G++ + D V +N +I
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY-----GIMRSKNVKPDRVVFNALI 549
Query: 348 HALCADGKMDKAHDLFLDM--EAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN 405
A G +D+A D+ +M E + PD + LM C + + E+ + E N
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 2e-11
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 304 DIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALC 351
D+ +Y+ LIDG CK G+++ A +LF+ + + + +V TY+I+I LC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 76/381 (19%), Positives = 145/381 (38%), Gaps = 48/381 (12%)
Query: 42 FEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101
F E+++ FG + + D + ++ G K G+ D+A L +M + PDV T+ V
Sbjct: 134 FGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCV 193
Query: 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161
+R D + + ++ G + +V + ++ K G + A + + M
Sbjct: 194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----P 249
Query: 162 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALS 221
R + +N ++ G+ G ELF +M + ++ + + +I+ +
Sbjct: 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309
Query: 222 LYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLC 281
++ ++ G V N+L + A K+F M+ D ++ I G
Sbjct: 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYE 365
Query: 282 KNGYIVEALELFRTLRI--------------LKC-------------ELDIR----SY-- 308
KNG +ALE + + C EL R SY
Sbjct: 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425
Query: 309 --SCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDM 366
+ LI+ K + A E+FH++P DV+++ +I L + + +A F M
Sbjct: 426 VANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQM 481
Query: 367 EAKGVAPDCVAFNTLMLGCIR 387
+ P+ V + C R
Sbjct: 482 LLT-LKPNSVTLIAALSACAR 501
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 6e-10
Identities = 59/249 (23%), Positives = 92/249 (36%), Gaps = 48/249 (19%)
Query: 177 LTGRVNRAKELFVSMESMGC--KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPT 234
GR A ELF +E GC +Y L+ K I ++Y + S G +P
Sbjct: 99 ACGRHREALELFEILE-AGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD 157
Query: 235 VVTYNTLFIGLFEIHQVERAFKLFDEM-QRHGVAADTWAYRTFIDGLCKNGYIVEALELF 293
N + + + + A +LFDEM +R+ + + T I GL G EA LF
Sbjct: 158 QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLAS-----WGTIIGGLVDAGNYREAFALF 212
Query: 294 RTL----------------------------RILKC------ELDIRSYSC-LIDGLCKS 318
R + + L C + SC LID K
Sbjct: 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
Query: 319 GRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAF 378
G ++ A +F +P V +N M+ G ++A L+ +M GV+ D F
Sbjct: 273 GDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328
Query: 379 NTLMLGCIR 387
+ ++ R
Sbjct: 329 SIMIRIFSR 337
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.5 bits (130), Expect = 6e-10
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 13 FGCEPNVITYSTLINGLCRTGHTIVALNLFEEM 45
G +P+V+TY+TLI+GLCR G A+ L +EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 52.7 bits (128), Expect = 1e-09
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMK 87
KPD V Y T+IDGLC+ G VD+A ELL +M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 6e-08
Identities = 14/33 (42%), Positives = 28/33 (84%)
Query: 124 QGVQPNVVTFSVIMDELCKNGKMEEASQLLELM 156
+G++P+VVT++ ++D LC+ G+++EA +LL+ M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.7 bits (115), Expect = 6e-08
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 192
G++P+ YNTL+DG C GRV+ A EL ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 7e-08
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 201 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTV 235
+Y+ LI+G CK +E AL L+ EM +GI+P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-07
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 341 VTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDC 375
VTYN +I LC G++++A +LF +M+ +G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 49/233 (21%), Positives = 94/233 (40%), Gaps = 43/233 (18%)
Query: 10 LKAFGCEP--NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTII 67
L+ F P +VI+++++I GL AL F +M+ + KP++V +
Sbjct: 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-------LTLKPNSVTLIAAL 496
Query: 68 DGLCKEGFVDKAKEL------------------LLQMKDK-----------NIN-PDVVT 97
+ G + KE+ LL + + N + DVV+
Sbjct: 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVS 556
Query: 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELM- 156
+N ++ G+ + A LF M++ GV P+ VTF ++ ++G + + + M
Sbjct: 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616
Query: 157 IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILING 209
+ + PN Y ++D L GR + E + + M + + L+N
Sbjct: 617 EKYSITPNLKHYACVVD---LLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 2e-07
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 194 MGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226
G K +V +Y+ LI+G C+ ++ A+ L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 2e-07
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 339 DVVTYNIMIHALCADGKMDKAHDLFLDME 367
DVVTYN +I LC G++D+A +L +ME
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 5e-07
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 89 KNINPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121
K + PDVVTYN++I G C A +EA L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 1e-06
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 2 EAAALFTKLKAFGCEPNVITYSTLINGLCR 31
EA LF ++K G +PNV TYS LI+GLC+
Sbjct: 21 EALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 1e-06
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95
V Y T+IDGLCK G V++A EL +MK++ I PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 1e-06
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 201 FSYSILINGYCKNKEIEGALSLYSEMLSKGI 231
+Y+ LI+GYCK ++E AL L+ EM KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 341 VTYNIMIHALCADGKMDKAHDLFLDMEAKGV 371
VTYN +I C GK+++A +LF +M+ KGV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 4e-06
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV 130
VTYN++I G C A EA LF EM ++G++P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 6e-06
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 229 KGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQ 262
KG+KP VVTYNTL GL +V+ A +L DEM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNI 91
V Y ++I G CK G +++A EL +MK+K +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 301 CELDIRSYSCLIDGLCKSGRLKIAWELF 328
+ D+ +Y+ LIDGLC++GR+ A EL
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 166 FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNV 200
YNTL+DG C GRV A ELF M+ G + +V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 46/224 (20%), Positives = 96/224 (42%), Gaps = 25/224 (11%)
Query: 14 GCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKE 73
G +++ + L++ + G A N+F+ M N + + +I G
Sbjct: 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN----------LISWNALIAGYGNH 404
Query: 74 GFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMM-DQGVQPNVVT 132
G KA E+ +M + + P+ VT+ +V+ Y+ S + +F M + ++P +
Sbjct: 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464
Query: 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTG-RVNRAKELF-VS 190
++ +++ L + G ++EA + +R F M LT R+++ EL ++
Sbjct: 465 YACMIELLGREGLLDEAYAM--------IRRAPFKPTVNMWAALLTACRIHKNLELGRLA 516
Query: 191 ME---SMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 231
E MG + +Y +L+N Y + A + + KG+
Sbjct: 517 AEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 3e-05
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 200 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP 233
+ +Y+ L+ K + + AL++ EM + G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 3e-05
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 340 VVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAP 373
+ TYN ++ AL G D A + +M+A G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 7e-05
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 95 VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQP 128
+ TYN+++ A D + A + EM G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 9e-05
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGV 126
VTYNS+I G+C A EA LF EM ++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 3 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVI 62
A L+ +K+ P V T + LI LC AL + EM G+ P+ +
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR----LGL--CPNTIT 756
Query: 63 YTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFC 106
Y+ ++ ++ D +LL Q K+ I P++V + G C
Sbjct: 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 166 FVYNTLMDGFCLTGRVNRAKELFVSMESMGC 196
YN+L+ G+C G++ A ELF M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 3e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 236 VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT 270
VTYNTL GL + +VE A +LF EM+ G+ D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 4e-04
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 131 VTFSVIMDELCKNGKMEEASQLLELMIQIGV 161
VT++ ++ CK GK+EEA +L + M + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 6e-04
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 20 ITYSTLINGLCRTGHTIVALNLFEEMI 46
+TY++LI+G C+ G AL LF+EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 131 VTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNA 165
VT++ ++D LCK G++EEA +L + M + G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 236 VTYNTLFIGLFEIHQVERAFKLFDEMQRHGV 266
VTYN+L G + ++E A +LF EM+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 130 VVTFSVIMDELCKNGKMEEASQLLELMIQIGVRP 163
+ T++ ++ L K G + A +LE M G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.1 bits (89), Expect = 0.003
Identities = 50/260 (19%), Positives = 94/260 (36%), Gaps = 5/260 (1%)
Query: 73 EGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVV- 131
+ A +LL+ K + + + + + EA L E ++ ++
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 132 TFSVIMDELCKNGKMEEASQLLELMIQIGVRPN-AFVYNTLMDGFCLTGRVNRAKELFVS 190
++ L K G++EEA +LLE +++ + PN A L G+ A EL
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 191 MESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML--SKGIKPTVVTYNTLFIGLFEI 248
++ ++ + + + + E AL LY + L + L L +
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 249 HQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSY 308
+ E A +L ++ + D A K G EALE + + + +
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA-LELDPDNAEAL 239
Query: 309 SCLIDGLCKSGRLKIAWELF 328
L L + GR + A E
Sbjct: 240 YNLALLLLELGRYEEALEAL 259
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.4 bits (80), Expect = 0.004
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDA 60
+TY+TLI+GLC+ G AL LF+EM +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG------IEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 405 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.95 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.95 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.94 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.92 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.9 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.85 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.81 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.81 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.81 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.8 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.8 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.8 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.8 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.79 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.78 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.78 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.77 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.77 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.76 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.76 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.75 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.74 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.74 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.74 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.73 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.67 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.67 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.66 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.65 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.65 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.64 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.6 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.6 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.59 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.59 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.56 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.56 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.55 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.52 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.52 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.52 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.51 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.5 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.49 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.49 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.49 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.48 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.48 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.46 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.44 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.44 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.43 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.42 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.41 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.4 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.4 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.38 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.38 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.31 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.29 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.29 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.27 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.26 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.18 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.17 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.17 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.14 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.11 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.11 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.1 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.08 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.08 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.05 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.01 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.01 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.01 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.0 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.0 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.0 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.99 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.99 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.96 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.96 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.95 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.95 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.92 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.92 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.9 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.88 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.85 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.84 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.82 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.79 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.78 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.78 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.72 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.67 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.65 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.63 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.61 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.58 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.57 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.52 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.46 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.42 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.41 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.39 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.37 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.35 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.34 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.32 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.32 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.3 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.28 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.28 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.28 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.26 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.25 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.25 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.22 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.21 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.2 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.2 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.2 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.2 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.17 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.16 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.16 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.14 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.14 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.13 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.12 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.1 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.1 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.09 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.08 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.08 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.08 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.07 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.07 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.04 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.02 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.01 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.0 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.98 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.98 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.96 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.88 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.88 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.88 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.87 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.86 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.86 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.85 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.83 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.83 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.77 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.73 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.73 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.73 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.72 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.68 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.68 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.66 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.64 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.62 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.61 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.59 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.56 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.5 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.49 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.49 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.47 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.45 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.44 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.41 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.32 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.31 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.28 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.25 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.25 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.15 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.1 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.1 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.09 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.07 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.05 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.04 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.02 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.01 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.91 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.91 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.91 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.88 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.87 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.87 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.87 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.81 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.73 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.71 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.7 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.7 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.67 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.56 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.55 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.54 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.53 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.53 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.49 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.43 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.38 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.36 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.23 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.12 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.12 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.11 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.07 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.98 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.81 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.75 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.74 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.73 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.73 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.72 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.71 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.65 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.61 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.61 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.52 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.51 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.5 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.5 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.49 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.39 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.32 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.16 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.14 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.12 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.09 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.06 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.05 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.98 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.97 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.91 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.84 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.73 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 94.63 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.55 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.53 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.53 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.37 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.26 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.25 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 94.24 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.15 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.12 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.12 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.97 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.96 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.68 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.59 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.56 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.31 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.19 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.11 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 93.08 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.85 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.77 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.62 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.49 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.4 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.14 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.11 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.04 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.83 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.74 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.71 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.68 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.61 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.59 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.36 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.35 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.28 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 91.25 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.19 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 91.18 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 91.0 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.98 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.54 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 90.48 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.37 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.27 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 90.05 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.95 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 89.77 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.64 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.57 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 89.52 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.48 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 89.35 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.15 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.15 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.64 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.2 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.12 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 87.92 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 87.78 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 87.76 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 87.66 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.27 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 86.94 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.69 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 86.26 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 86.1 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.07 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 85.87 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.48 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 85.16 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 85.08 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.73 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 84.57 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 84.01 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 83.93 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.6 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.29 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.72 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 82.13 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 81.93 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 81.35 | |
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 81.3 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 80.77 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 80.33 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 80.22 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-63 Score=454.54 Aligned_cols=395 Identities=20% Similarity=0.345 Sum_probs=374.1
Q ss_pred ChHhHHHHHHhhcCC-CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHH
Q 035749 1 MEAAALFTKLKAFGC-EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKA 79 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 79 (405)
++|+++|++|.+.|+ +++...+..++..|.+.|..++|..+|+.|. .|+..+|+.++.+|++.|+++.|
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----------~pd~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----------NPTLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----------CCCHHHHHHHHHHHHhCcCHHHH
Confidence 378999999999985 5677778889999999999999999998884 47899999999999999999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 80 KELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--cCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhh
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES--MGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVT 237 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (405)
|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.++.|+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 9999999999999999999999999999999976 57789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 035749 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCK 317 (405)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (405)
|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHH
Q 035749 318 SGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVEL 397 (405)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 397 (405)
.|++++|.++|++|.+.+..||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|..++.+|.+.|++++|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcC
Q 035749 398 LHRMDERN 405 (405)
Q Consensus 398 ~~~~~~~~ 405 (405)
+++|.+.|
T Consensus 777 ~~~M~k~G 784 (1060)
T PLN03218 777 LSQAKEDG 784 (1060)
T ss_pred HHHHHHcC
Confidence 99998765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=450.79 Aligned_cols=394 Identities=23% Similarity=0.374 Sum_probs=378.4
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|+.+|+.|.. |+..+|+.++.+|++.|+++.|.++|+.|.+.+ +.|+..+|+.+|.+|++.|++++|.+
T Consensus 424 eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 424 EAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG------LKADCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred HHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 67888888864 899999999999999999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH--c
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ--I 159 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 159 (405)
+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 5
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN 239 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (405)
|+.||..+|+.++.+|++.|++++|.++|+.|.+.+++|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn 653 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSG 319 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (405)
.++.+|.+.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|...++.||..+|+.++.+|++.|
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----c-------
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIR----N------- 388 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~------- 388 (405)
++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.+++++|.+.|+.||..+|+.++..|.+ .
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999865432 1
Q ss_pred ------------CchhHHHHHHHHhhhcC
Q 035749 389 ------------NETSKVVELLHRMDERN 405 (405)
Q Consensus 389 ------------g~~~~a~~~~~~~~~~~ 405 (405)
+..++|..+|++|.+.|
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred hhhhccccccccchHHHHHHHHHHHHHCC
Confidence 22467999999998875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-57 Score=413.22 Aligned_cols=384 Identities=21% Similarity=0.316 Sum_probs=339.5
Q ss_pred ChHhHHHHHHhhcC-CCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHH
Q 035749 1 MEAAALFTKLKAFG-CEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKA 79 (405)
Q Consensus 1 ~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 79 (405)
++|+++|+.|...+ ..||..+|+.++.++.+.++++.|.+++..+.+.+ +.|+..+|+.++..|++.|+++.|
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g------~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG------FEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCcchHHHHHHHHHHhcCCCHHHH
Confidence 36889999998764 67899999999999999999999999999999888 788999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 80 KELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|.+.|..+.+.+++..+.+.
T Consensus 178 ~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~ 253 (697)
T PLN03081 178 RRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT 253 (697)
T ss_pred HHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 999999864 6889999999999999999999999999999999999999999999999889888898888888888
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN 239 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (405)
|+.+|..+++.++.+|++.|++++|.++|+.|. +++..+|+.++.+|++.|+.++|.++|++|...|+.||..||+
T Consensus 254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~ 329 (697)
T PLN03081 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329 (697)
T ss_pred CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 888888889999999999999999999888885 4578889999999999999999999999988888888888999
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSG 319 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (405)
.++.+|++.|++++|.+++..|.+.|++||..+++.++.+|++.|++++|.++|+.|. .||..+|+.++.+|++.|
T Consensus 330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHG 405 (697)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcC
Confidence 9999999999999999999888888888888888888888888888888888888876 467788888888888888
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHccCchhHHHHHH
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA-KGVAPDCVAFNTLMLGCIRNNETSKVVELL 398 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 398 (405)
+.++|.++|++|.+.|+.||..+|+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|..++.+|.+.|++++|.+++
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888875 488888888888888888888888888888
Q ss_pred HHhh
Q 035749 399 HRMD 402 (405)
Q Consensus 399 ~~~~ 402 (405)
++|.
T Consensus 486 ~~~~ 489 (697)
T PLN03081 486 RRAP 489 (697)
T ss_pred HHCC
Confidence 8763
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-56 Score=406.13 Aligned_cols=381 Identities=18% Similarity=0.293 Sum_probs=318.1
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
.|.+++..|.+.|+.||..+|+.++..|++.|+++.|.++|++|. .|+..+|+.++.+|++.|++++|++
T Consensus 141 ~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~ 210 (697)
T PLN03081 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----------ERNLASWGTIIGGLVDAGNYREAFA 210 (697)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHH
Confidence 467888888888888888888888888888888888888888884 4677888888888888888888888
Q ss_pred HHHHHHhCCCCCChH-----------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 035749 82 LLLQMKDKNINPDVV-----------------------------------TYNSVIRGFCYANDSNEAKRLFIEMMDQGV 126 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~-----------------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (405)
+|++|.+.|+.|+.. +|+.|+.+|++.|++++|.++|++|.
T Consensus 211 lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---- 286 (697)
T PLN03081 211 LFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---- 286 (697)
T ss_pred HHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----
Confidence 888887766655544 45667777778888888888888774
Q ss_pred CccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 035749 127 QPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSIL 206 (405)
Q Consensus 127 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (405)
++|..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..+.+.|++|+..+++.+
T Consensus 287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 34778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 035749 207 INGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI 286 (405)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 286 (405)
+.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|..++.+|.+.|..
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~ 442 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcH
Confidence 8888888888888888888753 577888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHh-cCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 035749 287 VEALELFRTLRI-LKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLD 365 (405)
Q Consensus 287 ~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (405)
++|.++|+.|.+ .++.|+..+|+.++.+|.+.|++++|.++++++. ..|+..+|+.++.+|...|+++.|..++++
T Consensus 443 ~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 888888888865 5778888888888888888888888888888764 567888888888888888888888888888
Q ss_pred HHhCCCCC-CHHHHHHHHHHHHccCchhHHHHHHHHhhhcC
Q 035749 366 MEAKGVAP-DCVAFNTLMLGCIRNNETSKVVELLHRMDERN 405 (405)
Q Consensus 366 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 405 (405)
+.+. .| +..+|..++..|.+.|++++|.+++++|.++|
T Consensus 520 l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 520 LYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 8754 44 46688888899999999999999999998775
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-56 Score=414.64 Aligned_cols=381 Identities=19% Similarity=0.323 Sum_probs=297.9
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|+++|++|.+.|+.||..+|+.++.++++.|+.+.|.+++..+.+.+ ..|+..+|+.++..|++.|++++|.+
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG------FAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC------CccchHHHHHHHHHHHhcCCHHHHHH
Confidence 566777777777777777777777777777777777777777777666 66777777777777777777777777
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
+|++|. .||..+|+.++.+|.+.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.+.++++.+.+.|+
T Consensus 345 vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 345 VFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420 (857)
T ss_pred HHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence 777765 3466777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHH
Q 035749 162 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241 (405)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (405)
.|+..+++.++.+|++.|++++|.++|++|.+ ++..+|+.++.+|++.|+.++|+.+|++|.. ++.||..+|+.+
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~l 495 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAA 495 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHH
Confidence 77777777777777777777777777777653 4666777777777777777777777777765 467777777777
Q ss_pred HHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRL 321 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (405)
+.+|.+.|+.+.+.+++..+.+.|+.++..+++.++.+|++.|++++|..+|+.+ .+|..+|+.++.+|++.|+.
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCH
Confidence 7777777777777777777777777777777778888888888888888887765 57888888888889899999
Q ss_pred HHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 322 KIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDME-AKGVAPDCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++.+|.+.|++++|.+++++
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999988888888899999999999889999999999999888 568888888899999999999999999988888
Q ss_pred hh
Q 035749 401 MD 402 (405)
Q Consensus 401 ~~ 402 (405)
|.
T Consensus 651 m~ 652 (857)
T PLN03077 651 MP 652 (857)
T ss_pred CC
Confidence 73
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=412.59 Aligned_cols=383 Identities=24% Similarity=0.380 Sum_probs=275.1
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|+++|++|...|+.||..+|+.++++++..+++..+.+++..+.+.+ ..|+..+++.++.+|++.|+++.|.+
T Consensus 170 ~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~n~Li~~y~k~g~~~~A~~ 243 (857)
T PLN03077 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG------FELDVDVVNALITMYVKCGDVVSARL 243 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC------CCcccchHhHHHHHHhcCCCHHHHHH
Confidence 567777777777777777777666666666666666666666666555 55666666777777777777777777
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
+|++|.. ||..+|+.++.+|++.|++++|+++|.+|...|+.||..+|+.++.+|.+.|+.+.+.+++..+.+.|+
T Consensus 244 lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 244 VFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 7777653 466677777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHH
Q 035749 162 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241 (405)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (405)
.||..+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.+
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 7777777777777777777777777777764 356667777777777777777777777777777777777777777
Q ss_pred HHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc----------------------
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL---------------------- 299 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------- 299 (405)
+.+|++.|+++.|.+++..+.+.|..|+..+++.++.+|++.|++++|.++|++|.+.
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHH
Confidence 7777777777777777777776666666666666666666666666666666555321
Q ss_pred --------CCCccHHHHH-----------------------------------HHHHHHHhcCCHHHHHHHHhhccCCCc
Q 035749 300 --------KCELDIRSYS-----------------------------------CLIDGLCKSGRLKIAWELFHSLPRGVL 336 (405)
Q Consensus 300 --------~~~~~~~~~~-----------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~ 336 (405)
+.+||..+|. .++.+|.++|++++|.++|+.+
T Consensus 476 ~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----- 550 (857)
T PLN03077 476 IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----- 550 (857)
T ss_pred HHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----
Confidence 1233333333 3334444444555555555444
Q ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 337 IADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 337 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
.||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||..++.+|.+.|++++|.++|++|.+
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999999999999999999999999999999999983
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=248.91 Aligned_cols=383 Identities=15% Similarity=0.106 Sum_probs=277.4
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|++.|+.+.+.+ +.+..++..+...+.+.|++++|..+|+++.+.+ +.+...+..++..+...|++++|..
T Consensus 517 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 517 DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-------PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 4555555555443 3344555555666666666666666666665543 3445556666666666677777777
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
+++.+.+.. +.+...|..++.++...|++++|...|+++.+... .+...+..+..++...|++++|...++++.+..
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 766666543 45566677777777777777777777777766532 255566666777777777777777777776653
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHH
Q 035749 162 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241 (405)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (405)
+.+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+++...+ |+..++..+
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l 742 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKL 742 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHH
Confidence 4456667777777777777777777777776664 4566677777777788888888888888877753 444666677
Q ss_pred HHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRL 321 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (405)
..++...|++++|...+..+.+.. +.+...+..+...+...|++++|...|+++.+.. +.++.++..++..+...|+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-
Confidence 778888888888888888887764 5677778888888888888888888888888765 6677888888888888888
Q ss_pred HHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 322 KIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
.+|+..++++.+.. +.+...+..++..+...|++++|..+++++++.+. .+..++..++.++.+.|++++|.+++++|
T Consensus 820 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 820 PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77888888877652 23566777888889999999999999999998753 38889999999999999999999999998
Q ss_pred hh
Q 035749 402 DE 403 (405)
Q Consensus 402 ~~ 403 (405)
++
T Consensus 898 ~~ 899 (899)
T TIGR02917 898 LN 899 (899)
T ss_pred hC
Confidence 64
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-29 Score=240.34 Aligned_cols=385 Identities=12% Similarity=0.038 Sum_probs=224.4
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|+.+++.+.... ++++.+|..+...+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+
T Consensus 449 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 449 KALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-------PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred HHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-------CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 5666777666543 4556667777777777777777777777776654 3445555666666666666666666
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
.++++.+.+ +.+..++..+...+.+.|+.++|..+++++...+. .+...+..++..+...|++++|..+++.+.+..
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 666665543 33455555555555555555555555555544422 233444444455555555555555555544432
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC---------------------------------CCCChhhHHHHHH
Q 035749 162 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG---------------------------------CKHNVFSYSILIN 208 (405)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~ 208 (405)
+.+...+..++.++...|++++|...++.+.+.. .+.+..++..++.
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3344444444555555555555555555444432 0233444444444
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHH
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE 288 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 288 (405)
.+...|++++|..+++.+.... +++...+..+...+...|++++|...+..+...+ |+..++..++.++.+.|++++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 4445555555555555444432 2334445555555666666666666666665543 333455556666666666666
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 289 ALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
|...++.+.... +.+...+..++..|...|++++|...|+++.+.. +++..+++.++..+...|+ .+|+..++++.+
T Consensus 755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 755 AVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 666666666544 4566666667777777777777777777766553 3356667777777777777 667777777766
Q ss_pred CCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 369 KGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 369 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
. .+.++.++..+..++...|++++|.+.++++.+.
T Consensus 832 ~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 832 L-APNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred h-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5 2334556666777777888888888888877654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-24 Score=192.06 Aligned_cols=369 Identities=14% Similarity=0.039 Sum_probs=292.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+......+.+.|++++|+..|+++++.. |++..|..+..+|.+.|++++|++.++...+.. +.+...+..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--------p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~ 199 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--------PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNR 199 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 35577888999999999999999999854 677889999999999999999999999999875 557789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-----------------------------CccHhhHHHHHH-------------
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGV-----------------------------QPNVVTFSVIMD------------- 138 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~------------- 138 (405)
+..++...|++++|+..|..+...+. +++...+..+..
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhh
Confidence 99999999999999876654432110 000000000000
Q ss_pred -----------------H------HHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 035749 139 -----------------E------LCKNGKMEEASQLLELMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 139 -----------------~------~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (405)
. ....+++++|.+.|+...+.+ .+.....+..+..++...|++++|+..+++..+
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 012357889999999998764 233456788888899999999999999999988
Q ss_pred cCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHH
Q 035749 194 MGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAY 273 (405)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (405)
.. +.....|..+...+...|++++|+..|+++++.. +.+...+..+...+...|++++|...|++.++.. +.+...+
T Consensus 360 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~ 436 (615)
T TIGR00990 360 LD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSH 436 (615)
T ss_pred cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHH
Confidence 74 4456788899999999999999999999998863 3456788889999999999999999999999875 5567778
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccH------HHHHHHH
Q 035749 274 RTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADV------VTYNIMI 347 (405)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~ 347 (405)
..+..++.+.|++++|+..+++..... +.+...++.++..+...|++++|...|++..+.....+. ..++..+
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHH
Confidence 888999999999999999999998764 567888999999999999999999999998764221111 1122223
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 348 HALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
..+...|++++|..+++++...+ +.+...+..++..+.+.|++++|.+++++..+
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33445799999999999998863 33556788899999999999999999998754
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-25 Score=185.78 Aligned_cols=368 Identities=16% Similarity=0.111 Sum_probs=309.2
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh-
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV- 95 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 95 (405)
.-..+|..+...+-..|+++.|+.+++.+++.. |...+.|..+..++...|+.+.|.+.|.+..+.+ |+.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-------p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ 184 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELK-------PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLY 184 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchh
Confidence 345789999999999999999999999999975 5678899999999999999999999999998863 443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF 175 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (405)
.....+...+...|++.+|...|.+.++..+. -...|+.|...+..+|+...|++.|++..+.+ +.-...|..|...|
T Consensus 185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ 262 (966)
T KOG4626|consen 185 CARSDLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVY 262 (966)
T ss_pred hhhcchhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHH
Confidence 33445666666789999999999998876332 45678888888999999999999999998874 44567889999999
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHH
Q 035749 176 CLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAF 255 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (405)
...+.+++|...|.+..... +....++..+...|...|..+-|+..|++.++.. +.=...|+.+..++-..|++.+|.
T Consensus 263 ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 263 KEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred HHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHH
Confidence 99999999999999988764 5567788888888999999999999999998863 223468999999999999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC
Q 035749 256 KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGV 335 (405)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 335 (405)
..+.+.+... +......+.+...+...|.++.|..+|....+.. +--...++.|+..|...|++++|+..+++..+
T Consensus 341 ~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-- 416 (966)
T KOG4626|consen 341 DCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-- 416 (966)
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--
Confidence 9999998874 4567788899999999999999999999988764 34456788999999999999999999999887
Q ss_pred cCcc-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 336 LIAD-VVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD-CVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 336 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
+.|+ ...|+.+...|-..|+.+.|++.+.+++.. .|. ...++.|...|-.+|+..+|+..+++..+
T Consensus 417 I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 417 IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 4555 568899999999999999999999999874 444 45778889999999999999999988764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-23 Score=202.60 Aligned_cols=385 Identities=13% Similarity=0.067 Sum_probs=265.3
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHH------------HHHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVI------------YTTIID 68 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------------~~~l~~ 68 (405)
++|+..|+..++.. +.+..++..+...+.+.|++++|+..|+++++..+.. +.... ......
T Consensus 286 ~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~-----~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 286 GKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS-----SNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----cchhHHHHHHHhhhHHHHHHHHH
Confidence 47899999998874 4578899999999999999999999999999876321 11111 123355
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH--------
Q 035749 69 GLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL-------- 140 (405)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------- 140 (405)
.+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++++.... +...+..+...+
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHH
Confidence 6778999999999999999874 557788888999999999999999999999876432 344444444443
Q ss_pred ----------------------------------HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 035749 141 ----------------------------------CKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKE 186 (405)
Q Consensus 141 ----------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (405)
...|++++|+..+++.++.. +.+...+..+...|...|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 23445555555555554442 2233444445555555555555555
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh---------hHHHHHHHHHccccHHHHHHH
Q 035749 187 LFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV---------TYNTLFIGLFEIHQVERAFKL 257 (405)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~ 257 (405)
.++++.+.. +.++..+..+...+...++.++|+..++.+......++.. .+......+...|+.++|..+
T Consensus 517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 555554432 2233333333333444455555555554433221111110 111233445566777777766
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC
Q 035749 258 FDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI 337 (405)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (405)
++ . .+.+...+..+...+.+.|++++|+..|+++.... |.+...+..++..+...|++++|.+.++.+.+.. +
T Consensus 596 l~----~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p 668 (1157)
T PRK11447 596 LR----Q-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-N 668 (1157)
T ss_pred HH----h-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence 65 1 25566677788889999999999999999999875 6678899999999999999999999999887652 2
Q ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 338 ADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGV--AP---DCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
.+...+..+..++...|++++|.+++++++.... +| +...+..+...+...|++++|...+++..
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3566677788889999999999999999987522 12 22456667888999999999999999875
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-24 Score=183.48 Aligned_cols=306 Identities=13% Similarity=0.091 Sum_probs=248.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc---HhhHHHHHHHH
Q 035749 64 TTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN---VVTFSVIMDEL 140 (405)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 140 (405)
......+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 333455678899999999999999874 55677899999999999999999999999987532222 24677888999
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHhhcCCh
Q 035749 141 CKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHN----VFSYSILINGYCKNKEI 216 (405)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~ 216 (405)
...|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+...+..+. ...+..++..+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 99999999999999998764 55678889999999999999999999999987653222 12455677788899999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 035749 217 EGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTL 296 (405)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 296 (405)
++|...++++.+.. +.+...+..+...+...|++++|...++++...+......++..++.+|...|++++|...++++
T Consensus 197 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998763 33455777788899999999999999999987642223456788889999999999999999998
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCC
Q 035749 297 RILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCA---DGKMDKAHDLFLDMEAKGVAP 373 (405)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~ 373 (405)
.... |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|
T Consensus 276 ~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 276 LEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 8763 55566788899999999999999999988775 5788888887777664 568999999999999877777
Q ss_pred CHH
Q 035749 374 DCV 376 (405)
Q Consensus 374 ~~~ 376 (405)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 665
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-24 Score=183.29 Aligned_cols=307 Identities=13% Similarity=0.098 Sum_probs=253.8
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD---VVTY 98 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 98 (405)
.......+...|++++|+..|+++.+.+ |.+..++..+...+...|++++|..+++.+...+..++ ...+
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3344556778899999999999999876 56678999999999999999999999999987532211 2567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPN----AFVYNTLMDG 174 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~ 174 (405)
..++..+...|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 888999999999999999999998763 34678899999999999999999999999988753222 2245567788
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHH
Q 035749 175 FCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERA 254 (405)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (405)
+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999998864 4556788889999999999999999999998764333345678889999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh---cCCHHHHHHHHhhc
Q 035749 255 FKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCK---SGRLKIAWELFHSL 331 (405)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 331 (405)
...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++
T Consensus 269 ~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 269 LEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 9999999886 356666688899999999999999999998876 5777788877777664 55899999999998
Q ss_pred cCCCcCccHH
Q 035749 332 PRGVLIADVV 341 (405)
Q Consensus 332 ~~~~~~~~~~ 341 (405)
.+.++.|++.
T Consensus 345 ~~~~~~~~p~ 354 (389)
T PRK11788 345 VGEQLKRKPR 354 (389)
T ss_pred HHHHHhCCCC
Confidence 8766665554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-23 Score=184.21 Aligned_cols=332 Identities=14% Similarity=0.065 Sum_probs=273.3
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
...++..+.+.|++++|..+++..+... +.+...+..++.+....|++++|...++++.... |.+...+..+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~l 116 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLV 116 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 4556777889999999999999999875 5567788888888889999999999999999875 6678889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (405)
...+...|++++|...++++....+ .+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCH
Confidence 9999999999999999999988633 367788888999999999999999999887764 3344444443 347889999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHH----HHHH
Q 035749 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVER----AFKL 257 (405)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~ 257 (405)
++|...++.+......++......+...+...|++++|+..++++.... +.+...+..+...+...|++++ |...
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 9999999998776433444455566778889999999999999998864 3456677788899999999885 8999
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC
Q 035749 258 FDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI 337 (405)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (405)
++++.+.. |.+...+..+...+...|++++|...++++.... +.+...+..++.++...|++++|...|+.+... .
T Consensus 273 ~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~ 348 (656)
T PRK15174 273 WRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--K 348 (656)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 99998874 5577888899999999999999999999998875 556777888999999999999999999998875 3
Q ss_pred ccH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 338 ADV-VTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 338 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
|+. ..+..+..++...|++++|...|+++.+.
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 333 34445677888999999999999999876
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-23 Score=185.25 Aligned_cols=361 Identities=11% Similarity=0.007 Sum_probs=290.3
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN 109 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (405)
.+..+++.-.-+|....+.... ...+..-...++..+.+.|++++|+.+++...... +-+...+..++.+....|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g 90 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRD----SAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASS 90 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhh----hcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcC
Confidence 4556666655555554432210 11233446677788889999999999999998874 556777778888888999
Q ss_pred CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 035749 110 DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV 189 (405)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (405)
++++|...++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++
T Consensus 91 ~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 999999999999987443 67788889999999999999999999999874 5567888899999999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCcc
Q 035749 190 SMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD 269 (405)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 269 (405)
.+.... +.+...+..+ ..+...|++++|...++.+......++......+...+...|++++|...+.++.+.. +.+
T Consensus 169 ~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~ 245 (656)
T PRK15174 169 TQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDG 245 (656)
T ss_pred HHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence 887664 3344444444 3478899999999999998876433444455556778889999999999999999875 567
Q ss_pred HHHHHHHHHHHhcCCChHH----HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHH
Q 035749 270 TWAYRTFIDGLCKNGYIVE----ALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNI 345 (405)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 345 (405)
...+..+...+...|++++ |...++++.... |.+...+..++..+...|++++|...++++.+.. +.+...+..
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~ 323 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 7888889999999999986 899999998875 6678899999999999999999999999988753 235667888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 346 MIHALCADGKMDKAHDLFLDMEAKGVAPDC-VAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
+..++...|++++|+..++++... .|+. ..+..+..++...|++++|...+++..+.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 899999999999999999999985 3443 33444567889999999999999987653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-24 Score=176.16 Aligned_cols=366 Identities=14% Similarity=0.070 Sum_probs=310.3
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|+..++.+.+.. +.....|..+..++...|+.+.|.+.|-++++.+ |........+...+-..|+.++|.
T Consensus 133 ~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln-------P~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 133 QDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-------PDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-------cchhhhhcchhHHHHhhcccchhH
Confidence 36888999998874 4467899999999999999999999999999975 333445555666666789999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
..|.+.++.. +-=...|..|...+..+|++..|++.|++..+..+. -...|..|...|...+.++.|...+.+.....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 9999988763 334677999999999999999999999999886432 36788899999999999999999999998774
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHH
Q 035749 161 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNT 240 (405)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (405)
+.....+..+...|...|..+-|+..|++..+.. |.-+.+|+.|..++-..|+..+|.+.|.+.+... +......+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 4456778899999999999999999999999885 5568899999999999999999999999999863 335667889
Q ss_pred HHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 035749 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR 320 (405)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (405)
+...+.+.|.+++|..+|....+-. +.-....+.+...|-++|++++|+..++++.+.. |.-...++.+...|-..|+
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHHhcchHHHHhhh
Confidence 9999999999999999999998763 4446678899999999999999999999998764 4456789999999999999
Q ss_pred HHHHHHHHhhccCCCcCc-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 035749 321 LKIAWELFHSLPRGVLIA-DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD-CVAFNTLMLGC 385 (405)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 385 (405)
.+.|.+.+.+.+.. .| =...++.|...|-..|+..+|+.-+++.++. .|| +..+..++.+.
T Consensus 438 v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence 99999999999875 34 3678999999999999999999999999985 554 34566665544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-22 Score=182.19 Aligned_cols=355 Identities=15% Similarity=0.038 Sum_probs=280.5
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|+..|+...+. .|+...|..+..+|...|++++|+..++++++.+ |.+..++..+..++...|++++|+
T Consensus 144 ~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 144 NKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------PDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4689999998876 5788889999999999999999999999999876 567889999999999999999998
Q ss_pred HHHHHHHhCC-----------------------------CCCChHHHHHHHH----------------------------
Q 035749 81 ELLLQMKDKN-----------------------------INPDVVTYNSVIR---------------------------- 103 (405)
Q Consensus 81 ~~~~~~~~~~-----------------------------~~~~~~~~~~l~~---------------------------- 103 (405)
..|..+...+ .+++...+..+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 7665443211 0111001111100
Q ss_pred --HH------HhcCCHHHHHHHHHHHHHCC-C-CccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035749 104 --GF------CYANDSNEAKRLFIEMMDQG-V-QPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMD 173 (405)
Q Consensus 104 --~~------~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (405)
.. ...+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++.++.. +.....|..+..
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~ 373 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRAS 373 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 00 11257889999999998764 2 2245677888888999999999999999999874 445678889999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHH
Q 035749 174 GFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVER 253 (405)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (405)
++...|++++|...++++.+.. +.+..++..+...+...|++++|+..|++.+... +.+...+..+...+.+.|++++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998875 5678899999999999999999999999999874 3356677788889999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccH------HHHHHHHHHHHhcCCHHHHHHH
Q 035749 254 AFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDI------RSYSCLIDGLCKSGRLKIAWEL 327 (405)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~ 327 (405)
|...++..++.. +.++..+..+..++...|++++|...|++........+. ..++..+..+...|++++|..+
T Consensus 452 A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 452 SMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999998764 566888999999999999999999999998876422111 1122223334457999999999
Q ss_pred HhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 328 FHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
+++..+.. +.+...+..++..+...|++++|+..|+++.+.
T Consensus 531 ~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 531 CEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99987753 234567889999999999999999999999875
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-22 Score=192.88 Aligned_cols=362 Identities=12% Similarity=0.053 Sum_probs=252.8
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChHHH----
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP-DVVTY---- 98 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~---- 98 (405)
.....+...|++++|+..|+++++.. |.+..++..+..++.+.|++++|+..|++..+..... ....+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 34567788999999999999999875 5678899999999999999999999999998764211 11112
Q ss_pred --------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 035749 99 --------NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNT 170 (405)
Q Consensus 99 --------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (405)
......+.+.|++++|+..|+++++..+ .+...+..+..++...|++++|++.|+++.+.. +.+...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~ 424 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRG 424 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 1224567789999999999999998744 366778888999999999999999999998874 334444444
Q ss_pred HHHHH------------------------------------------HccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 035749 171 LMDGF------------------------------------------CLTGRVNRAKELFVSMESMGCKHNVFSYSILIN 208 (405)
Q Consensus 171 l~~~~------------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 208 (405)
+...+ ...|++++|...+++..+.. |.+...+..+..
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~ 503 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44433 33455555555555555543 334444555555
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccH---------HHHHHHHHH
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT---------WAYRTFIDG 279 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~ 279 (405)
.|.+.|++++|...++++.... +.+...+..+...+...++.++|...++.+......++. ..+......
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 5555556666665555555432 112222323333344455555555555544322111111 111233455
Q ss_pred HhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHH
Q 035749 280 LCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKA 359 (405)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 359 (405)
+...|+.++|..+++. .+.+...+..++..+...|++++|+..|+++.+.. +.+...+..++..+...|++++|
T Consensus 583 l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 6667777777777661 25666778889999999999999999999988763 33678899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 360 HDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
++.++.+.+. -+.+...+..+..++...|++++|.++++++.+
T Consensus 657 ~~~l~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 657 RAQLAKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999988875 233556677788889999999999999998865
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-22 Score=181.34 Aligned_cols=386 Identities=13% Similarity=0.043 Sum_probs=280.9
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|+++|....... +.+...+..+...+...|++++|..+|+++++.. |.++..+..++..+...|++++|+.
T Consensus 33 ~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 33 EVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-------PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6777888877632 4455568888888888888888888888888765 5567777788888888888888888
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
.++++.+.. |.+.. +..+..++...|+.++|+..++++.+..+. +...+..+..++...+..++|+..++.+..
T Consensus 105 ~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~--- 178 (765)
T PRK10049 105 KAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL--- 178 (765)
T ss_pred HHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---
Confidence 888887763 55566 778888888888888888888888876443 555666677777788888888888876553
Q ss_pred CCCH------HHHHHHHHHHHc-----cCCH---HHHHHHHHHHHhc-CCCCChh-hH----HHHHHHHhhcCChHHHHH
Q 035749 162 RPNA------FVYNTLMDGFCL-----TGRV---NRAKELFVSMESM-GCKHNVF-SY----SILINGYCKNKEIEGALS 221 (405)
Q Consensus 162 ~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~ 221 (405)
.|+. ......++.... .+++ ++|+..++.+.+. ...|+.. .+ ...+..+...|++++|+.
T Consensus 179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~ 258 (765)
T PRK10049 179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS 258 (765)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 1211 111222222221 1233 6778888887754 1122221 11 111334567799999999
Q ss_pred HHHHHHhCCCC-CchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 035749 222 LYSEMLSKGIK-PTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA---DTWAYRTFIDGLCKNGYIVEALELFRTLR 297 (405)
Q Consensus 222 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (405)
.|+++.+.+.+ |+. ....+...+...|++++|...|+.+.+..... .......+..++...|++++|..+++.+.
T Consensus 259 ~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 259 EYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred HHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 99999887532 332 22235678999999999999999988653111 13455666778899999999999999988
Q ss_pred hcCC-----------Ccc---HHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHH
Q 035749 298 ILKC-----------ELD---IRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLF 363 (405)
Q Consensus 298 ~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (405)
.... .|+ ...+..++..+...|++++|++.++++.... +.+...+..++..+...|++++|++.+
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6531 122 2355677888999999999999999988763 446788999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 364 LDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
+++.+.. +.+...+...+..+...|++++|..+++++++.
T Consensus 417 ~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 417 KKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999862 335667777788899999999999999998764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-20 Score=171.82 Aligned_cols=383 Identities=8% Similarity=-0.009 Sum_probs=290.1
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHH
Q 035749 4 AALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELL 83 (405)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 83 (405)
+..++. .+.+ +.++....-.+.+....|+.++|++++.++.... +.....+..+...+...|++++|.++|
T Consensus 2 ~~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-------~~~a~~~~~lA~~~~~~g~~~~A~~~~ 72 (765)
T PRK10049 2 LSWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-------QLPARGYAAVAVAYRNLKQWQNSLTLW 72 (765)
T ss_pred chhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 445555 3332 5566667778888999999999999999998643 456778999999999999999999999
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 035749 84 LQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRP 163 (405)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (405)
++..+.. |.+...+..++..+...|++++|+..++++.+..+ .+.. +..+..++...|+.++|+..++++.+.. +.
T Consensus 73 ~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~ 148 (765)
T PRK10049 73 QKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQ 148 (765)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 9998874 56678888999999999999999999999998743 3556 8888999999999999999999999985 55
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHh-----hcCCh---HHHHHHHHHHHhC
Q 035749 164 NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNV------FSYSILINGYC-----KNKEI---EGALSLYSEMLSK 229 (405)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~ 229 (405)
+...+..+..++...+..++|+..++.+... |+. ......+.... ..+++ ++|+..++.+.+.
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~---p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANLT---PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 6677777888888999999999999876641 221 11122222222 12234 7788888888864
Q ss_pred -CCCCchh-hHH----HHHHHHHccccHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCC
Q 035749 230 -GIKPTVV-TYN----TLFIGLFEIHQVERAFKLFDEMQRHGVA-ADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCE 302 (405)
Q Consensus 230 -~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 302 (405)
...|+.. .+. ..+..+...|++++|...|+.+.+.+.+ |+ .....+..++...|++++|+..|+++......
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 2223221 111 1133456779999999999999987522 22 23333577899999999999999998765311
Q ss_pred c---cHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCc-----------Ccc---HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 035749 303 L---DIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVL-----------IAD---VVTYNIMIHALCADGKMDKAHDLFLD 365 (405)
Q Consensus 303 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 365 (405)
. .......+..++...|++++|..+++.+.+... .|+ ...+..++..+...|++++|+.++++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 134566677788999999999999998876421 122 23456677888999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 366 MEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
+... .+.+...+..++..+...|++++|.+.+++..+.
T Consensus 385 al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 385 LAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 9986 4557788889999999999999999999988753
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-18 Score=156.95 Aligned_cols=386 Identities=11% Similarity=0.036 Sum_probs=251.4
Q ss_pred hHhHHHHHHhhcCCCCCh--hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHH
Q 035749 2 EAAALFTKLKAFGCEPNV--ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKA 79 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 79 (405)
+|+..|+..++.. |+. ..+ .++..+...|+.++|+..++++.... +........++..+...|++++|
T Consensus 52 ~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-------n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 52 PVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-------NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 5777788877763 332 233 77777778888888888888887321 33344445556677788888888
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 80 KELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
+++|+++.+.. |.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 88888888774 445677777777888888888888888888765 344444444444444456665688888888777
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHH------------------------------------------------HH
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFV------------------------------------------------SM 191 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------------------------------------------------~~ 191 (405)
. +.+...+..+..++.+.|-...|.++.. .+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 4 4455555555555555554444443332 11
Q ss_pred Hhc-CCCCCh-h----hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC
Q 035749 192 ESM-GCKHNV-F----SYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 192 ~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (405)
... +..|.. . ...-.+-++...+++.++++.|+.+...+.+....+-..+..+|...+++++|..++..+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 110 001111 1 1122344566677788888888888776654334466677788888888888888888876542
Q ss_pred -----CCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC-----------Ccc---HHHHHHHHHHHHhcCCHHHHHH
Q 035749 266 -----VAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC-----------ELD---IRSYSCLIDGLCKSGRLKIAWE 326 (405)
Q Consensus 266 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~ 326 (405)
.+++......|.-++...+++++|..+++.+.+... .|+ ......++..+...|++.+|.+
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122333346677788888888888888888776311 111 1233445666778888888888
Q ss_pred HHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 327 LFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
.++.+.... +-|......+...+...|++.+|+..++.+... -+-+..+....+.++...|++.+|..+.+.+.+
T Consensus 438 ~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 438 KLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 888876653 337777778888888888888888888666654 233455666677777788888888877766654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-18 Score=153.08 Aligned_cols=372 Identities=14% Similarity=0.087 Sum_probs=274.5
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
.+.+-..-+-...+.|+++.|+..|+++++.+ |.++.....++..+...|+.++|+..+++..... +.....
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-------P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~ 104 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG-------PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRG 104 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-------ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHH
Confidence 33344444555679999999999999999876 2332222388888889999999999999988321 223334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
...++..+...|++++|+++|+++.+..+. +...+..++..+...++.++|++.++++... .|+...+..++..+..
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~ 181 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRA 181 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHh
Confidence 444466888999999999999999998554 5777778888999999999999999999877 4555556555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHH----------------------------------
Q 035749 178 TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLY---------------------------------- 223 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~---------------------------------- 223 (405)
.++..+|+..++++.+.. |.+...+..+..++.+.|-...|.++.
T Consensus 182 ~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 182 TDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred cchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 677767999999999875 445666666666655555443333333
Q ss_pred --------------HHHHhC-CCCCch-hh----HHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC
Q 035749 224 --------------SEMLSK-GIKPTV-VT----YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (405)
Q Consensus 224 --------------~~~~~~-~~~~~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (405)
+.+... +..|.. .. ....+.++...+++.++++.++.+...+.+....+...+..+|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 232221 111221 11 1233456778899999999999999887666667889999999999
Q ss_pred CChHHHHHHHHHHHhcC-----CCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCc-----------Ccc---HHHHH
Q 035749 284 GYIVEALELFRTLRILK-----CELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVL-----------IAD---VVTYN 344 (405)
Q Consensus 284 ~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~ 344 (405)
+++++|+.+++.+.... .+++......|..++...+++++|..+++.+.+..+ .|+ ...+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 99999999999986643 123444457888999999999999999998876311 122 12344
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 345 IMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 345 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
.++..+...|++.+|++.++++... -+-|......+...+...|.+.+|.+.++...
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 5677788999999999999999876 45588888899999999999999999997654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-17 Score=153.65 Aligned_cols=216 Identities=8% Similarity=-0.017 Sum_probs=150.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHH
Q 035749 179 GRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLF 258 (405)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (405)
++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+..++.+.|+.++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444555544444443 233332223344445677777777777776553 333344555566677778888888888
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCc
Q 035749 259 DEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIA 338 (405)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 338 (405)
....+.. +.+...+..+.......|++++|...+++..+.. |+...+..++.++.+.|++++|...+++..... +.
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd 641 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PN 641 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 7777654 3333334344444555688888888888888764 467788888888889999999999998888763 33
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 339 DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 339 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
+...++.+..++...|++++|+..++++.+. .+-+...+..+..++...|++++|...+++..+
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5677888888888899999999999988886 244677788888889999999999998888764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-18 Score=148.39 Aligned_cols=370 Identities=12% Similarity=0.068 Sum_probs=229.1
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
..|..+.+++...|++++|...|-+..+.++ ......+..+.+.+++.|+++.+...|+.+.+.. |.+..+..
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~------d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~ 380 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADN------DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMK 380 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCC------CCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHH
Confidence 4566777777777888888777777776552 1113445666777777777777777777776653 44555555
Q ss_pred HHHHHHHhcC----CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHH----HcCCCCCHHHHHHH
Q 035749 100 SVIRGFCYAN----DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMI----QIGVRPNAFVYNTL 171 (405)
Q Consensus 100 ~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l 171 (405)
.|...|...+ ..+.|..++.+..+.- +.|...|..+...+-....+.. +.+|..+. ..+..+.+...|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 5555555543 3344444444444432 2244455544444443322222 43333322 22333444455555
Q ss_pred HHHHHccCCHHHHHHHHHHH--------------------------------------------HhcCCCCChhhHHHHH
Q 035749 172 MDGFCLTGRVNRAKELFVSM--------------------------------------------ESMGCKHNVFSYSILI 207 (405)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~--------------------------------------------~~~~~~~~~~~~~~l~ 207 (405)
...+...|++.+|...|... .... |.-...|-.++
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~ 537 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhh
Confidence 55555555555555555544 3331 11222233332
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHhc----
Q 035749 208 NGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH-GVAADTWAYRTFIDGLCK---- 282 (405)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~---- 282 (405)
......+...+|...+..+...+ ..++..+..+...+.....+..|.+-|....+. ...+|..+.-.+...|.+
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 22222344555555555554432 223444445555666666666666655554432 123455555555554432
Q ss_pred --------CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCC
Q 035749 283 --------NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADG 354 (405)
Q Consensus 283 --------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 354 (405)
.+..++|+++|.+++... |.+...-+.++.+++..|++.+|..+|.++.+... ....+|..+.++|+.+|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHH
Confidence 245778999999988876 77888889999999999999999999999987633 35678999999999999
Q ss_pred CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 355 KMDKAHDLFLDMEAK-GVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 355 ~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
+|..|+++|+...+. ....+..+...|.+++.+.|.+.+|.+.+....
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999988765 344577888999999999999999998877654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-17 Score=141.50 Aligned_cols=372 Identities=15% Similarity=0.102 Sum_probs=288.1
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
..-.....+...|++++|..++.++++.. |.+...|..|..+|-..|+.+++...+-.+-..+ |-|...|..
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ 212 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD-------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKR 212 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 33444555666799999999999999986 6778899999999999999999998876665553 557899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHH
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVY----NTLMDGFC 176 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~ 176 (405)
+.....+.|+++.|.-.|.+.++..+ ++...+..-+..|-+.|+...|...|.++.+...+.|..-+ ...+..+.
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999854 46777777788999999999999999999987533333222 33456677
Q ss_pred ccCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC--------------------------
Q 035749 177 LTGRVNRAKELFVSMESMG-CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK-------------------------- 229 (405)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------- 229 (405)
..++-+.|.+.++.....+ -..+...++.++..+.+...++.+..........
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 7788899999988877632 2345667889999999999999998888777651
Q ss_pred -CCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC--CCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHH
Q 035749 230 -GIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG--VAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIR 306 (405)
Q Consensus 230 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 306 (405)
+..++... ..++.++.+.+..+....+.......+ +..+...+.-+..++...|.+.+|+.++..+......-+..
T Consensus 372 ~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 11222222 233445556666556666666666655 33456788899999999999999999999998876556678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh--------CCCCCCHHHH
Q 035749 307 SYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA--------KGVAPDCVAF 378 (405)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~ 378 (405)
+|..++++|...|.++.|.+.|+.+.... +.+..+-..|...+.+.|+.++|.+.+..+.. .+..|+....
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~ 529 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRIL 529 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHH
Confidence 99999999999999999999999998752 23566677788889999999999999998542 2355666676
Q ss_pred HHHHHHHHccCchhHHHHHHHHhhh
Q 035749 379 NTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 379 ~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
......+.+.|+.++-......|+.
T Consensus 530 ~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 530 AHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7777888899999887776666653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-16 Score=148.32 Aligned_cols=352 Identities=11% Similarity=-0.012 Sum_probs=248.0
Q ss_pred hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C-CCCChHHHHHHHHHHHhc
Q 035749 31 RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-N-INPDVVTYNSVIRGFCYA 108 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~ 108 (405)
..+...++...+..+.+.. +.+......+.-..++.|+.++|.++|+..... + ...+......++..|.+.
T Consensus 354 ~~~~~~~~~~~~~~~y~~~-------~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 426 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQE-------PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESH 426 (987)
T ss_pred ccCchhHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC
Confidence 4466667777777776653 446666777777777788888888888877652 1 122334444666666655
Q ss_pred CC---HHHHHH----------------------HHHHHHHC-C-CCc--cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 109 ND---SNEAKR----------------------LFIEMMDQ-G-VQP--NVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 109 ~~---~~~a~~----------------------~~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
+. ..++.. .++..... + .++ +...|..+..++.. ++.++|...+.+....
T Consensus 427 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~ 505 (987)
T PRK09782 427 PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR 505 (987)
T ss_pred CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh
Confidence 44 222222 22222221 1 123 56677777777766 7888899988877766
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN 239 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (405)
.|+......+...+...|++++|...++++... +|+...+..+...+.+.|+.++|...+++..... +++...+.
T Consensus 506 --~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~ 580 (987)
T PRK09782 506 --QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYW 580 (987)
T ss_pred --CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHH
Confidence 355444444555667889999999999987655 4455556677788888999999999999988764 22333333
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSG 319 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (405)
.+.......|++++|...+++..+.. |+...+..+..++.+.|++++|...++++.... |.+...+..+..++...|
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 33344445699999999999988764 567788888889999999999999999998876 667788888888999999
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCchhHHHHHH
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD-CVAFNTLMLGCIRNNETSKVVELL 398 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 398 (405)
++++|+..+++..+.. +-+...+..+..++...|++++|+..+++..+. .|+ ..+.........+..+++.|.+-+
T Consensus 658 ~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 658 DIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999887753 236778888999999999999999999999875 343 345555566677777777777766
Q ss_pred HHh
Q 035749 399 HRM 401 (405)
Q Consensus 399 ~~~ 401 (405)
++.
T Consensus 735 ~r~ 737 (987)
T PRK09782 735 GRR 737 (987)
T ss_pred HHH
Confidence 654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-18 Score=137.64 Aligned_cols=391 Identities=15% Similarity=0.110 Sum_probs=225.0
Q ss_pred hHhHHHHHHhhcCCCCChhHHH-HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYS-TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
||+..++-+++....|+...+. .+...+.+..++.+|+++|+.++..-+... ......+.+.+...+.+.|+++.|+
T Consensus 219 ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin--k~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 219 EALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN--KDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc--hhhHHHHHhhcCeeEEecccchhhH
Confidence 5667777777766666665433 456778888889999999988887642211 0112446677777788889999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc------------cHhhHHHHHH-----HHHcC
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQP------------NVVTFSVIMD-----ELCKN 143 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~l~~-----~~~~~ 143 (405)
..|+...+. .|+..+-..|+-++.--|+.++..+.|.+|+.....| +....+..+. -.-+.
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 999988776 4676666666667777888888888888887642222 2222221111 11111
Q ss_pred C--CHHHHHHHHHHHHHcCCCCCHH-------------HH--------HHHHHHHHccCCHHHHHHHHHHHHhcCCCCCh
Q 035749 144 G--KMEEASQLLELMIQIGVRPNAF-------------VY--------NTLMDGFCLTGRVNRAKELFVSMESMGCKHNV 200 (405)
Q Consensus 144 ~--~~~~a~~~~~~~~~~~~~~~~~-------------~~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 200 (405)
. +.++++-.--+++.--+.|+-. .+ ..-.--+.+.|+++.|+++++-+.+...+.-.
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 1 1122221111111111111100 00 01123466777777777777665543211111
Q ss_pred hhHHHH------------------------------------HHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 035749 201 FSYSIL------------------------------------INGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIG 244 (405)
Q Consensus 201 ~~~~~l------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (405)
..-+.| .+.....|++++|.+.|++.+..+..-.. ....+...
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e-alfniglt 533 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE-ALFNIGLT 533 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH-HHHHhccc
Confidence 111110 11112346777777777777665322111 22223334
Q ss_pred HHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 035749 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (405)
+-..|+.++|++.|-++... +..+..++..+...|....+..+|++++.+.... +|.|+.++..+...|-+.|+-..|
T Consensus 534 ~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhh
Confidence 55667777777777665543 1335566666666777777777777777666544 356667777777777777777777
Q ss_pred HHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HccCchhHHHHHHHHhh
Q 035749 325 WELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGC-IRNNETSKVVELLHRMD 402 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~ 402 (405)
.+..-+--+. ++-+..+...|...|....-+++|+.+|+++.- +.|+..-|..++..| .+.|++++|.++++...
T Consensus 612 fq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 612 FQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 6665444333 344666666677667777777777777776654 467777776666443 45677777777776654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-16 Score=124.85 Aligned_cols=386 Identities=12% Similarity=0.088 Sum_probs=292.0
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|..+|++.+..+ ..+...|...+..-.++.....|..++++++..- |.-...|...+..--..|+...|.+
T Consensus 91 RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-------PRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 91 RARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-------PRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-------chHHHHHHHHHHHHHHhcccHHHHH
Confidence 5889999999876 4567789999999999999999999999998763 3444567777777777899999999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-C
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI-G 160 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 160 (405)
+|++..+- .|+..+|.+.|..-.+.+.++.|..+|+...-. .|+..+|...++.-.+.|....+..+|+.+.+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99998875 789999999999999999999999999998764 588899988888888899999998888887654 1
Q ss_pred -CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-------------------------------------------CC
Q 035749 161 -VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM-------------------------------------------GC 196 (405)
Q Consensus 161 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------------~~ 196 (405)
-..+...+.++...-.++..++.|.-+|+-..+. ..
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 0112334445544444555555555555433321 11
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh--hHHH---H-----HHHHHccccHHHHHHHHHHHHHcCC
Q 035749 197 KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV--TYNT---L-----FIGLFEIHQVERAFKLFDEMQRHGV 266 (405)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~---l-----~~~~~~~~~~~~a~~~~~~~~~~~~ 266 (405)
+.|-.+|-..++.-...|+.+...++|++++.. ++|-.. .|.. | +-.-....+.+.+.++++..++. +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 445566677777777889999999999998875 455221 1111 1 11123567888999999988874 4
Q ss_pred CccHHHHHHHHHHH----hcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHH
Q 035749 267 AADTWAYRTFIDGL----CKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVT 342 (405)
Q Consensus 267 ~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 342 (405)
|....++..+--.| .++.++..|.+++..+.. .-|-..++...|..-.+.+++|.+..++++.++.++ -+..+
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~ 473 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYA 473 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHH
Confidence 55555655544443 467889999999998874 468888999999999999999999999999998743 37788
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 343 YNIMIHALCADGKMDKAHDLFLDMEAKG-VAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
|......-...|+.+.|..+|.-+++.. +......|...|..-...|.++.|+.+++++.++
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 8888888889999999999999998762 2223456777777778899999999999999875
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-15 Score=122.66 Aligned_cols=397 Identities=16% Similarity=0.202 Sum_probs=283.7
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHh--cCchH-HHHHHHHHHHcCCCCCccc-------------ccccHHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCR--TGHTI-VALNLFEEMINGNGEFGVV-------------CKPDAVIYTT 65 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~-~A~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 65 (405)
++.-+++.|.+.|++.+...-..|.+.-+- +.+.. .-.+.|-.+...+.+.+.. .|.+..++..
T Consensus 133 Ds~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~ 212 (625)
T KOG4422|consen 133 DSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVSI 212 (625)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHHH
Confidence 456789999999988888777766654332 22222 1233344444333222211 3556789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCC
Q 035749 66 IIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGK 145 (405)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (405)
+|.++++--+.++|.+++++......+.+..+||.+|.+-.-..+ .++..+|....+.||..|+|.++.+..+.|+
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~ 288 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGK 288 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcc
Confidence 999999999999999999999888778999999999876544332 7889999999999999999999999999998
Q ss_pred HHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHh----cCC----CCChhhHHHHHHHHhh
Q 035749 146 MEE----ASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNR-AKELFVSMES----MGC----KHNVFSYSILINGYCK 212 (405)
Q Consensus 146 ~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~ 212 (405)
++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++..+.. ... +.+...|...+..|.+
T Consensus 289 F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~ 368 (625)
T KOG4422|consen 289 FEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSS 368 (625)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHH
Confidence 765 56788889999999999999999999998888644 4445544432 222 2244556677788888
Q ss_pred cCChHHHHHHHHHHHhCC----CCCch---hhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 035749 213 NKEIEGALSLYSEMLSKG----IKPTV---VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (405)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 285 (405)
..+.+-|.++..-+.... +.|+. .-|..+....+.....+.....|+.|...-.-|+..+...++++....|.
T Consensus 369 l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~ 448 (625)
T KOG4422|consen 369 LRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANR 448 (625)
T ss_pred hhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCc
Confidence 888888888776655431 23332 23556677778888899999999999988778899999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC-CH--------H-----HHHHHHh-------hccCCCcCccHHHHH
Q 035749 286 IVEALELFRTLRILKCELDIRSYSCLIDGLCKSG-RL--------K-----IAWELFH-------SLPRGVLIADVVTYN 344 (405)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~-----~a~~~~~-------~~~~~~~~~~~~~~~ 344 (405)
++-..++|..+...|..........+...+++.. ++ . -|..+++ ++.+. .......+
T Consensus 449 ~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~ 526 (625)
T KOG4422|consen 449 LEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLN 526 (625)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHH
Confidence 9999999988887775544444444444444433 11 1 1112221 12222 23455667
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 345 IMIHALCADGKMDKAHDLFLDMEAKG----VAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 345 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
..+..+.+.|+.++|.+++.-+.+.+ ..|.......++..-.+.+...+|..+++-|...
T Consensus 527 ~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 527 CIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 77777889999999999999886543 2234444556777778889999999998877653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-16 Score=124.84 Aligned_cols=373 Identities=16% Similarity=0.202 Sum_probs=275.6
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
|.+..++..+|.++++-...+.|.+++++..+.. .+.+..+||.+|.+-.-. ...+++.+|......||.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK------GKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNL 273 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh------heeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCch
Confidence 5677899999999999999999999999998876 578899999999875533 337899999999999999
Q ss_pred HHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHH-HHHHHHHHHHc----CC----C
Q 035749 96 VTYNSVIRGFCYANDSNE----AKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEE-ASQLLELMIQI----GV----R 162 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~----~ 162 (405)
.|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++..+... .+ +
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999998865 55778889999999999999999999988887644 55555555432 12 2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC----CCCC---hhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCch
Q 035749 163 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG----CKHN---VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTV 235 (405)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 235 (405)
.|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+..+.++....+.-...|+.|.-.-+-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 345566778888989999999988877665421 1222 234566777788888999999999999988788899
Q ss_pred hhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC-Ch--------HH-----HHHHH-------H
Q 035749 236 VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG-YI--------VE-----ALELF-------R 294 (405)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~~-----a~~~~-------~ 294 (405)
.+...++++....+.++-.-+++.+++..|..........++..+++.. +. .. |..++ .
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~ 513 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI 513 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999988876555555555555555543 11 11 11111 1
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC-CcCccHHHHH---HHHHHHHcCCCHHHHHHHHHHHHhCC
Q 035749 295 TLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG-VLIADVVTYN---IMIHALCADGKMDKAHDLFLDMEAKG 370 (405)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~ 370 (405)
++.+ ........+..+-.+.+.|+.++|.++|.-+.++ +-.|-....| -++..-...+++..|..+++-|...+
T Consensus 514 R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 514 RQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 1222 2455667788888899999999999999887443 2333334444 55566678889999999999998765
Q ss_pred CCCCHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 371 VAPDCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 371 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
.+.-...-..+...|.-+..-.+++.-+..
T Consensus 592 ~~~~E~La~RI~e~f~iNqeq~~~ls~l~~ 621 (625)
T KOG4422|consen 592 LPICEGLAQRIMEDFAINQEQKEALSNLTA 621 (625)
T ss_pred chhhhHHHHHHHHhcCcCHHHHHHHhhhhh
Confidence 443332445555666555555555554443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-15 Score=131.09 Aligned_cols=389 Identities=14% Similarity=0.081 Sum_probs=269.9
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
+.|.+.|...++.. ++|.-.+.--.......+++..|+.+|..++...+. .+|+ ....+..++.+.|+.+.|+
T Consensus 147 ~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~----~~aD--~rIgig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPA----CKAD--VRIGIGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcc----cCCC--ccchhhhHHHhccchhhHH
Confidence 36778888888775 566655555566667889999999999998877643 2333 3445557788899999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYAN---DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMI 157 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (405)
..|.+..+.+ |.++.++..|...-.... .+..+...+...-.... -++...+.|...+.-.|+++.+..+...+.
T Consensus 220 ~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 220 LAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 9999998874 334555544444333333 34566666666655533 377888888999999999999999988887
Q ss_pred HcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCch
Q 035749 158 QIGV--RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTV 235 (405)
Q Consensus 158 ~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 235 (405)
.... ..-...|..+.++|...|++++|..+|.+..+.........+..+.+.+.+.|+.+.+...|+.+.... +.+.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~ 376 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNY 376 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchH
Confidence 6531 122345788899999999999999999888776422224456678889999999999999999988762 4456
Q ss_pred hhHHHHHHHHHccc----cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHH----hcCCCccHHH
Q 035749 236 VTYNTLFIGLFEIH----QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLR----ILKCELDIRS 307 (405)
Q Consensus 236 ~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~ 307 (405)
.+...+...|...+ ..++|..++.+..+.. +.|...|-.+...+....- ..++.+|..+. ..+.++.+..
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~ 454 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEV 454 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 67777777777664 5677788888777764 6677777777777765444 34477766653 3444677888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccCC---CcCc------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHH
Q 035749 308 YSCLIDGLCKSGRLKIAWELFHSLPRG---VLIA------DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD-CVA 377 (405)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~ 377 (405)
.|.++..+...|++.+|...|...... ...+ +..+--.+..++-..++++.|.+.|+...+. .|. ...
T Consensus 455 LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ 532 (1018)
T KOG2002|consen 455 LNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDA 532 (1018)
T ss_pred HHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHH
Confidence 899999899999999998888876543 1112 2223334566666778888888888888875 333 233
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 378 FNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 378 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
|..++......++..+|..+++...+
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 44444333345677777777776653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-16 Score=126.33 Aligned_cols=372 Identities=15% Similarity=0.119 Sum_probs=248.3
Q ss_pred hHhHHHHHHhhcCCCCCh------hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC
Q 035749 2 EAAALFTKLKAFGCEPNV------ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF 75 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (405)
.|+++++-.+.. -|+. ...+.+...+.+.|+++.|+..|+...+.. |+..+-..|+-++..-|+
T Consensus 255 kaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--------pn~~a~~nl~i~~f~i~d 324 (840)
T KOG2003|consen 255 KAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--------PNFIAALNLIICAFAIGD 324 (840)
T ss_pred HHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--------ccHHhhhhhhhhheecCc
Confidence 466666655544 2322 234555566778899999999999988754 666655556666667788
Q ss_pred hHHHHHHHHHHHhCCCCCChHH--------HHHHHHHHHhc---------C--CHHHHHHHHHHHHHCCCCccH------
Q 035749 76 VDKAKELLLQMKDKNINPDVVT--------YNSVIRGFCYA---------N--DSNEAKRLFIEMMDQGVQPNV------ 130 (405)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~---------~--~~~~a~~~~~~~~~~~~~~~~------ 130 (405)
-++..+.|.+|+.....||..- ...|+.-..+. + +.++++-.-.+++.--+.|+-
T Consensus 325 ~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dw 404 (840)
T KOG2003|consen 325 AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDW 404 (840)
T ss_pred HHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHH
Confidence 8888888988876532222111 11122111111 1 111111111111111111110
Q ss_pred ---------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--------------------------------
Q 035749 131 ---------------VTFSVIMDELCKNGKMEEASQLLELMIQIGVRP-------------------------------- 163 (405)
Q Consensus 131 ---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------- 163 (405)
..-..-...+.+.|+++.|++++.-+.+..-+.
T Consensus 405 cle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln 484 (840)
T KOG2003|consen 405 CLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN 484 (840)
T ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc
Confidence 000112335667777777777776654432111
Q ss_pred ----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH
Q 035749 164 ----NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN 239 (405)
Q Consensus 164 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (405)
+......-.+.....|++++|...|++.......-....|+ +.-.+-..|+.++|++.|-++... ...+.....
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~ 562 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLV 562 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHH
Confidence 11111111222345688999999999988654222222333 334567789999999999887653 234667778
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSG 319 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (405)
.+...|....++..|++++.+.... ++.|+..+..+...|-+.|+-.+|.+.+-..... +|.+..+...+...|....
T Consensus 563 qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhH
Confidence 8889999999999999999888765 5788999999999999999999998887655433 4788999999999999999
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALC-ADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNE 390 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (405)
-+++++.+|++..- +.|+..-|..++..|. +.|+++.|.++++....+ ++.|...+..|++.+...|-
T Consensus 641 f~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 641 FSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999998765 5789999998886655 789999999999999876 77788888888888877663
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-14 Score=117.84 Aligned_cols=381 Identities=11% Similarity=0.094 Sum_probs=260.9
Q ss_pred HhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHH
Q 035749 3 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKEL 82 (405)
Q Consensus 3 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 82 (405)
|.++|++..+. .|+..+|.+.|..-.+.+.++.|..++++..- +.|+...|......-.+.|+...+..+
T Consensus 160 aRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--------~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 160 ARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--------VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 56666666654 56667777777776677777777777776654 346666666666666667777777777
Q ss_pred HHHHHhC-C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc--HhhHHHHHHHHHcCCCHHHHHHH------
Q 035749 83 LLQMKDK-N-INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN--VVTFSVIMDELCKNGKMEEASQL------ 152 (405)
Q Consensus 83 ~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~------ 152 (405)
|+...+. | -..+...+.+....-.++..++.|.-+|.-.++. ++.+ ...|..+...--+-|+.......
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 6666543 1 0011223333333333455666666666666654 2212 23343333333344554333322
Q ss_pred --HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChh--hHHHHH--------HHHhhcCChHHHH
Q 035749 153 --LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVF--SYSILI--------NGYCKNKEIEGAL 220 (405)
Q Consensus 153 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~--------~~~~~~~~~~~a~ 220 (405)
++..++.+ +.|-.+|...++.-...|+.+...++|++++..- ||-.. .|...| ..-....+.+.+.
T Consensus 309 ~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444444 6677888888888889999999999999998863 44221 122221 1123468999999
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHH----ccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 035749 221 SLYSEMLSKGIKPTVVTYNTLFIGLF----EIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTL 296 (405)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 296 (405)
++|+..++. ++....||..+.-.|+ ++.+...|.+++...+. ..|...++...+..-.+.++++.+..++++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999884 5666778877766654 66789999999988774 5789999999999999999999999999999
Q ss_pred HhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC-cCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 035749 297 RILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGV-LIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDC 375 (405)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 375 (405)
++.+ |-+..+|...+..-...|+.+.|..+|+-+++.. .......|...|..-...|.++.|..+++++++. .+..
T Consensus 464 le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~ 540 (677)
T KOG1915|consen 464 LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHV 540 (677)
T ss_pred HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccc
Confidence 9887 6788899999988899999999999999887642 2223455667777777899999999999999986 4455
Q ss_pred HHHHHHHHHHH-----ccC-----------chhHHHHHHHHhh
Q 035749 376 VAFNTLMLGCI-----RNN-----------ETSKVVELLHRMD 402 (405)
Q Consensus 376 ~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~ 402 (405)
.+|.++...-. +.| +...|+.+|++..
T Consensus 541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 56766665433 344 5667777777653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-15 Score=130.78 Aligned_cols=355 Identities=15% Similarity=0.107 Sum_probs=268.1
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|..++.++.+.. +.+...|..|...|-+.|+.+++...+-.+-..+ |.+...|..+.....+.|.+++|.
T Consensus 156 eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-------p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 156 EEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-------PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHhcccHHHHH
Confidence 47999999999886 6778899999999999999999999988887775 567799999999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHH----HHHHHHHcCCCHHHHHHHHHHH
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFS----VIMDELCKNGKMEEASQLLELM 156 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~ 156 (405)
-.|.+.++.. |++...+-.-+..|-+.|+...|...|.++....++.+..-+. ..+..+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999885 6676666777888999999999999999999875533333333 3455677778779999998887
Q ss_pred HHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC---------------------------CCCChhhHHHHHH
Q 035749 157 IQI-GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG---------------------------CKHNVFSYSILIN 208 (405)
Q Consensus 157 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~ 208 (405)
... +-..+...++.++..+.+...++.+........... ..++..++ .+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 763 224456677888888999999999988887766511 11122221 1222
Q ss_pred HHhhcCChHHHHHHHHHHHhCC--CCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCCh
Q 035749 209 GYCKNKEIEGALSLYSEMLSKG--IKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYI 286 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 286 (405)
++...+..+....+........ +.-+...|..+..++...|.+.+|+.+|..+.......+...|..+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3334444444444444444544 33355678889999999999999999999998775445567899999999999999
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccC--------CCcCccHHHHHHHHHHHHcCCCHHH
Q 035749 287 VEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPR--------GVLIADVVTYNIMIHALCADGKMDK 358 (405)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~ 358 (405)
++|.+.|+.++... |.+..+-..|...+...|+.++|.+.+..+.. ....|+....-.....+...|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999998875 66777788888999999999999999988652 2233444444445556667777666
Q ss_pred HHHHHHHH
Q 035749 359 AHDLFLDM 366 (405)
Q Consensus 359 A~~~~~~~ 366 (405)
=+.+...|
T Consensus 545 fi~t~~~L 552 (895)
T KOG2076|consen 545 FINTASTL 552 (895)
T ss_pred HHHHHHHH
Confidence 54444433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-19 Score=144.36 Aligned_cols=262 Identities=16% Similarity=0.157 Sum_probs=100.6
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIR 103 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (405)
.+...+.+.|++++|++++++...... .+.++..|..+.......++++.|.+.++++...+ +-++..+..++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~-----~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~ 86 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA-----PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 557778888888888888865443320 13455566666667777888888888888887764 335666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHH
Q 035749 104 GFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG-VRPNAFVYNTLMDGFCLTGRVN 182 (405)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 182 (405)
. ...+++++|.++++...+. .++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.+
T Consensus 87 l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 87 L-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred c-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 6 6788888888888776554 2455666777777888888888888888876532 3456677777888888888888
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHH
Q 035749 183 RAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQ 262 (405)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (405)
+|.+.+++..+.. |.+......++..+...|+.+++..++....... +.++..+..+..++...|++++|...+++..
T Consensus 164 ~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 164 KALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 8888888888774 4457777788888888888888777777776653 3455566777788888888888888888877
Q ss_pred HcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 035749 263 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLR 297 (405)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (405)
+.. +.|+.....+..++...|+.++|.++.+++.
T Consensus 242 ~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 242 KLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHS-TT-HHHHHHHHHHHT----------------
T ss_pred ccc-ccccccccccccccccccccccccccccccc
Confidence 764 5677778888888888888888888777654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-16 Score=132.49 Aligned_cols=282 Identities=12% Similarity=0.071 Sum_probs=180.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCCHHHHH
Q 035749 108 ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYN--TLMDGFCLTGRVNRAK 185 (405)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 185 (405)
.|+++.|.+.+....+....| ...+.....+....|+++.|...+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777777666654432111 222333344446777788888877777664 34433222 3356677777888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh-------hHHHHHHHHHccccHHHHHHHH
Q 035749 186 ELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV-------TYNTLFIGLFEIHQVERAFKLF 258 (405)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 258 (405)
..++.+.+.. |.++.....+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+....++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8887777765 5566777777777777788888887777777765432221 1222222223334445555555
Q ss_pred HHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCc
Q 035749 259 DEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIA 338 (405)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 338 (405)
+.+.+. .+.++.....+...+...|+.++|..++++..+. +++.... ++.+....++++++.+..+...+.. +-
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 555433 2456667777777788888888888888777763 4454322 2233334577788887777776652 23
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 339 DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 339 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
|...+..+...+.+.|++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++-
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5566777777888888888888888887774 677777777778888888888888777765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-15 Score=131.43 Aligned_cols=119 Identities=13% Similarity=0.164 Sum_probs=49.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHH
Q 035749 73 EGFVDKAKELLLQMKDKNINPD-VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQ 151 (405)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (405)
.|+++.|.+.+.+..+.. |+ ...+-....+..+.|+.+.|.+.+.+..+....+...........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 344555555444443331 22 222223334444445555555554444433211111122222444444445555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 152 LLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
.++.+.+.. |.+..+...+...+...|++++|.+.+..+.+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 544444443 333344444444444455555555444444444
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-19 Score=146.39 Aligned_cols=261 Identities=15% Similarity=0.098 Sum_probs=81.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc
Q 035749 135 VIMDELCKNGKMEEASQLLELMIQIG-VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN 213 (405)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (405)
.+...+.+.|++++|.++++...... .+.+...|..+...+...++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34555666666666666664433332 13334444455555556666666666666666554 2344455555555 566
Q ss_pred CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHhcCCChHHHHHH
Q 035749 214 KEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG-VAADTWAYRTFIDGLCKNGYIVEALEL 292 (405)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 292 (405)
+++++|.+++....+. .++...+...+..+...++++++..++..+.... .+.+...+......+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666655443 2344445555566666666666666666655321 234555566666666666777777777
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 035749 293 FRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVA 372 (405)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 372 (405)
++++.+.. |.+......++..+...|+.+++.++++...+.. +.|+..+..+..++...|++++|...+++..+. .+
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NP 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-ST
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-cc
Confidence 76666654 3455666666666666666666666665554432 234455666666667777777777777776664 23
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 373 PDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 373 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
.|+.....+..++...|+.++|.++.+++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 366666666677777777777776666554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-15 Score=128.80 Aligned_cols=285 Identities=14% Similarity=0.059 Sum_probs=222.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhH--HHHHHHHHcCCCHHH
Q 035749 72 KEGFVDKAKELLLQMKDKNINPDVVT-YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTF--SVIMDELCKNGKMEE 148 (405)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~ 148 (405)
..|+++.|.+.+....+.. +++.. |........+.|+++.|.+.+.++.+. .|+.... ......+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3699999998888776642 23333 334455558999999999999999875 3443322 244678889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCh-------hhHHHHHHHHhhcCChHHHHH
Q 035749 149 ASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNV-------FSYSILINGYCKNKEIEGALS 221 (405)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 221 (405)
|...++.+.+.. |.+......+...|.+.|++++|..++..+.+....++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999886 667888899999999999999999999999987643222 123333444444455666667
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC
Q 035749 222 LYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301 (405)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 301 (405)
+++.+... .+.++.....+...+...|+.++|...+.+..+. ++++.... +.+....++.+++.+..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhC-
Confidence 77665443 3456778888899999999999999999999884 56664332 333445699999999999998875
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
|.|+..+..+++.+...+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++....
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 677888999999999999999999999999884 688899999999999999999999999988653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-15 Score=129.92 Aligned_cols=288 Identities=13% Similarity=0.097 Sum_probs=170.7
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh--HHHHHHHHHHH
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV--VTYNSVIRGFC 106 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 106 (405)
....|+++.|.+.+.+..+.. +.....+........+.|+++.|.+.+.+..+.. |+. .........+.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~-------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHA-------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL 164 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH
Confidence 356899999999999987754 2234455566788888999999999999987653 443 34444688889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHH---HccCCHH
Q 035749 107 YANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTL-MDGF---CLTGRVN 182 (405)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~---~~~~~~~ 182 (405)
..|+++.|...++.+.+..+. +...+..+...+...|++++|.+.+..+.+.+.. +...+..+ ...+ ...+..+
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998644 6778889999999999999999999999998643 33333211 1111 2222222
Q ss_pred HHHHHHHHHHhcCC---CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhH---HHHHHHHHccccHHHHHH
Q 035749 183 RAKELFVSMESMGC---KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTY---NTLFIGLFEIHQVERAFK 256 (405)
Q Consensus 183 ~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~ 256 (405)
+....+..+.+... +.++..+..+...+...|+.+.|.+++++..+.. |+.... ..........++.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHH
Confidence 22333433333211 1356666677777777777777777777777652 232210 111111122344444444
Q ss_pred HHHHHHHcCCCccH--HHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 035749 257 LFDEMQRHGVAADT--WAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHS 330 (405)
Q Consensus 257 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 330 (405)
.++...+.. +.|+ .....+...+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++
T Consensus 321 ~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 321 LIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444331 2233 333444444444455555555444322212234444444444444444554444444443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-14 Score=116.88 Aligned_cols=331 Identities=13% Similarity=0.058 Sum_probs=189.3
Q ss_pred CCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035749 14 GCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP 93 (405)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 93 (405)
+...|...+......+.+.|....|++.|....... |-.-.+|..|..... +.+. ...... +.+.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-------P~~W~AWleL~~lit---~~e~----~~~l~~-~l~~ 223 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-------PWFWSAWLELSELIT---DIEI----LSILVV-GLPS 223 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-------CcchHHHHHHHHhhc---hHHH----HHHHHh-cCcc
Confidence 446676666667777888899999999998887654 344445555544322 1221 111111 1121
Q ss_pred ChH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC---CHHHH
Q 035749 94 DVV--TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRP---NAFVY 168 (405)
Q Consensus 94 ~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 168 (405)
+.. .--.+..++-.....+++..-.+.....|.+-+...-+....+.....++++|+.+|+.+.+.. +- |..+|
T Consensus 224 ~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdly 302 (559)
T KOG1155|consen 224 DMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLY 302 (559)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHH
Confidence 111 1112334445555666777777777776666555555555555666777777777777777663 21 34455
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHcc
Q 035749 169 NTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEI 248 (405)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (405)
..++-.-. +-.+.--+-......+ +--+.|...+.+-|.-.++.++|...|+..++.+ +.....|+.+..-|...
T Consensus 303 SN~LYv~~---~~skLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEm 377 (559)
T KOG1155|consen 303 SNVLYVKN---DKSKLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEM 377 (559)
T ss_pred hHHHHHHh---hhHHHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHh
Confidence 44432211 1111111111111111 2334455556666666666666776666666653 22334555566666666
Q ss_pred ccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 249 HQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELF 328 (405)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (405)
.+...|.+.++.+++-+ |.|-..+..+.++|.-.+...=|+-.|+++.... |.|...|..|+.+|.+.++.++|++.|
T Consensus 378 KNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred cccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 66666666666666654 5566666666666666666666666666666654 556666666777776667777777666
Q ss_pred hhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 329 HSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
......+- .+...+..|...|-+.++.++|...|++.++
T Consensus 456 krai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 456 KRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66655432 2445666666666666666666666666554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-14 Score=118.63 Aligned_cols=388 Identities=12% Similarity=0.064 Sum_probs=204.8
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHH------------
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDG------------ 69 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------ 69 (405)
.|..+++...+. ++.+...|..-...--.+|+.+...++.++.+..-...| +..+.+.|..=...
T Consensus 424 nAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ng--v~i~rdqWl~eAe~~e~agsv~TcQA 500 (913)
T KOG0495|consen 424 NAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANG--VEINRDQWLKEAEACEDAGSVITCQA 500 (913)
T ss_pred HHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcc--eeecHHHHHHHHHHHhhcCChhhHHH
Confidence 455666666654 455666666666666666666666666555432111111 23334444443333
Q ss_pred -------------------------HHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 70 -------------------------LCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 70 -------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
|.+.+.++-|..+|...++. .+.+...|...+..--..|..++...+++++...
T Consensus 501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 44444444444444444433 1233344444444333444555555555555444
Q ss_pred CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHH
Q 035749 125 GVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYS 204 (405)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (405)
++.....|...+..+-..|+...|..++..+.+.. +-+..+|..-+.......+++.|..+|.+.... .++...|.
T Consensus 580 -~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~m 655 (913)
T KOG0495|consen 580 -CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWM 655 (913)
T ss_pred -CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhH
Confidence 22234444444445555566666666665555543 334555555555555556666666666655543 34555555
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHhCCCCCc-hhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC
Q 035749 205 ILINGYCKNKEIEGALSLYSEMLSKGIKPT-VVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (405)
Q Consensus 205 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (405)
--+....-.++.++|++++++.++. .|+ ...|-.+.+.+-+.++.+.|...|..-.+. .|.....+-.+...-.+.
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHh
Confidence 4444444555566666666555553 222 224444555555555555555555544433 133334444444555555
Q ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC----C------------------------
Q 035749 284 GYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG----V------------------------ 335 (405)
Q Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~------------------------ 335 (405)
|.+-+|..++++.+..+ |.+...|...+++-.+.|+.+.|..+..+..+. |
T Consensus 733 ~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred cchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence 66666666666665554 556666666666666666666665555443321 0
Q ss_pred -cCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 336 -LIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 336 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
..-|+.+...+...|....+++.|.+.|.+.++.+ +.+..+|..+...+.+.|.-++-.+++..+.
T Consensus 812 kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 812 KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 01134445555566666667777777777777653 3345566666677777776666666666553
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-14 Score=118.76 Aligned_cols=335 Identities=12% Similarity=0.023 Sum_probs=273.4
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
.+|..-...|.+.+-++-|..+|..+++.. +.....|...+..--..|..+....+|+++... +|-....|.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf-------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwl 588 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF-------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWL 588 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHH
Confidence 467777778888888999999999998864 667788888888877889999999999999876 455667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (405)
.....+...|+...|..++....+..+. +...|...+.......+++.|..+|.+.... .++..+|..-+...--.+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhh
Confidence 7788888899999999999999887544 7788888888899999999999999988775 678888887777777889
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHH
Q 035749 180 RVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFD 259 (405)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (405)
..++|.+++++..+.- +.-...|..+.+.+-+.++.+.|...|..-.+. ++.....|..+...-.+.|++-+|..+++
T Consensus 666 ~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 9999999999988763 445667888889999999999999998877665 34445566666667777889999999999
Q ss_pred HHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC-----------------------------CCccHHHHHH
Q 035749 260 EMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK-----------------------------CELDIRSYSC 310 (405)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~ 310 (405)
+..-.+ |.+...|-..+++-.+.|+.+.|..++.++++.- +.-|+.+...
T Consensus 744 rarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVlla 822 (913)
T KOG0495|consen 744 RARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLA 822 (913)
T ss_pred HHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHH
Confidence 888776 6678888888999999999999888877665321 2345666777
Q ss_pred HHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 311 LIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
+...+....++++|.+.|.+..+.+. ....+|..+...+..+|.-++-.+++.+....
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 78888888899999999999988643 36788999999999999999999999998875
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-16 Score=132.34 Aligned_cols=290 Identities=13% Similarity=0.053 Sum_probs=231.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CccHhhHHHHHHHHHcCCCHHHHH
Q 035749 73 EGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGV--QPNVVTFSVIMDELCKNGKMEEAS 150 (405)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 150 (405)
.-+..+|+..|+.+... +.-+.++...+..+|...+++++|.++|+.+.+..+ .-+...|...+.-+-+ +-++
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 34577899999996654 345567888899999999999999999999987521 1145666666544322 1222
Q ss_pred H-HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 151 Q-LLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 151 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
. +-+.+.+.. +..+.+|..+.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 2 223344443 6678999999999999999999999999999875 447889999999999999999999999998875
Q ss_pred CCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHH
Q 035749 230 GIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYS 309 (405)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 309 (405)
. +-+...|.-+...|.+.++++.|.-.|+++.+.+ |.+......+...+.+.|+.++|+++++++.... +.|+..-.
T Consensus 485 ~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 D-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred C-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 2 2234455567788999999999999999999876 6677788888899999999999999999998877 56777777
Q ss_pred HHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 035749 310 CLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAP 373 (405)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 373 (405)
..+..+...+++++|+..++++.+. .+.+..+|-.++..|.+.|+.+.|+.-|--+.+.+.++
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 7788889999999999999999885 33367788889999999999999999999988864433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-15 Score=113.73 Aligned_cols=290 Identities=13% Similarity=0.141 Sum_probs=166.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---cHhhHHHHHHHHHcCCCHHHH
Q 035749 73 EGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQP---NVVTFSVIMDELCKNGKMEEA 149 (405)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 149 (405)
+++.++|.++|-+|.+.. +.+..+..+|...|.+.|..+.|+++.+.+.++.--+ -..+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456777777777776643 3445556667777777777777777777766541110 012333455566667777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHhhcCChHHHHHHHHH
Q 035749 150 SQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHN----VFSYSILINGYCKNKEIEGALSLYSE 225 (405)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (405)
+.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+..+. ...|.-+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 77777766644 33445566667777777777777777776666543322 12344455555556666677777776
Q ss_pred HHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccH
Q 035749 226 MLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDI 305 (405)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 305 (405)
..+.+ +.....--.+.......|+++.|.+.++.+.+.+..--+.+...+..+|.+.|+.++....+..+.+.. +..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 66653 122333334555666667777777777776666544445566666667777777777776666666543 333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHc---CCCHHHHHHHHHHHHhC
Q 035749 306 RSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCA---DGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 369 (405)
..-..+........-.+.|...+.+-... .|+...+..++..-.. .|...+....++.|...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33344444444444455555554443332 4666666666655442 23445555555555543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-14 Score=111.72 Aligned_cols=297 Identities=16% Similarity=0.151 Sum_probs=230.9
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD---VVTY 98 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 98 (405)
|-.=++.+ -.++.++|+++|-++.+.+ +.+.++...|...+.+.|..++|+.+.+.+.++.--+. ....
T Consensus 39 Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d-------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl 110 (389)
T COG2956 39 YVKGLNFL-LSNQPDKAVDLFLEMLQED-------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLAL 110 (389)
T ss_pred HHhHHHHH-hhcCcchHHHHHHHHHhcC-------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 33333333 4678899999999999975 56788999999999999999999999999988621111 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPN----AFVYNTLMDG 174 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~ 174 (405)
..|.+-|...|-++.|+.+|..+.+.+. --..+...|+..|-...+|++|+.+-+++.+.+..+. ...|..+...
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 5678889999999999999999987642 3567788899999999999999999999988864443 3457788888
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHH
Q 035749 175 FCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERA 254 (405)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (405)
+....+.+.|..++.+..+.+ +..+.+--.+.+.....|+++.|.+.++.+.+.+..--+.+...+..+|...|+.++.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 190 ALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 899999999999999998875 5556666778899999999999999999999986544556778899999999999999
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc---CCHHHHHHHHhhc
Q 035749 255 FKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKS---GRLKIAWELFHSL 331 (405)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~ 331 (405)
...+..+.+.. +.......+........-.+.|...+.+-... .|+...+..++...... |...+....++.|
T Consensus 269 ~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 269 LNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred HHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 99999998874 33344444555545555566676666655544 68999999998876543 3455666666666
Q ss_pred c
Q 035749 332 P 332 (405)
Q Consensus 332 ~ 332 (405)
.
T Consensus 345 v 345 (389)
T COG2956 345 V 345 (389)
T ss_pred H
Confidence 5
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-14 Score=114.39 Aligned_cols=328 Identities=12% Similarity=0.029 Sum_probs=240.4
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhH--HH
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTF--SV 135 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 135 (405)
.|...+......+.+.|....|.+.|...... .|..-.+|..|.... .+.+.+ ..+... .+.+...+ -.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~----~~l~~~-l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEIL----SILVVG-LPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHH----HHHHhc-CcccchHHHHHH
Confidence 34444445555666778888888888777654 233333443333322 222222 222221 12121111 13
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHhh
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH---NVFSYSILINGYCK 212 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 212 (405)
+..++....+.+++.+-.+...+.|++-+...-+....+.....++++|+.+|+++.+.. |- |..+|+.++. .+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHH--HH
Confidence 445566667888888888888888888777777777788889999999999999998873 22 5566766653 33
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHH
Q 035749 213 NKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALEL 292 (405)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 292 (405)
..+- .+..+.+-...-.+--+.|...+..-|.-.++.++|...|++.++.+ +.....+..+..-|....+...|.+-
T Consensus 310 ~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 2222 12222222111112234577788888999999999999999999986 55667788888999999999999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 035749 293 FRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVA 372 (405)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 372 (405)
++++.+.. |.|...|..++++|...+.+.-|+-+|++..+.. +.|+..|.+|+.+|.+.++.++|++.|.++...|-.
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 99999987 7899999999999999999999999999998863 348999999999999999999999999999987533
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 373 PDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 373 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
+...+..|.+.|.+.++.++|...+++.++
T Consensus 465 -e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 -EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 668899999999999999999999998765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-15 Score=128.41 Aligned_cols=285 Identities=14% Similarity=0.107 Sum_probs=231.3
Q ss_pred CchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChHHHHHHHHHHHhcCC
Q 035749 33 GHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NPDVVTYNSVIRGFCYAND 110 (405)
Q Consensus 33 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 110 (405)
=+..+|+..|++.... .+.+.++...+..+|...+++++|..+|+.+.+... --+..+|.+.+.-+-+.
T Consensus 333 y~~~~A~~~~~klp~h-------~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~-- 403 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-------HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE-- 403 (638)
T ss_pred HHHHHHHHHHHhhHHh-------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--
Confidence 3557899999995554 456678899999999999999999999999987631 12567888877654222
Q ss_pred HHHHHH-HHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 035749 111 SNEAKR-LFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV 189 (405)
Q Consensus 111 ~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (405)
-++. +-+.+.+.. +-.+.+|-.+..+|.-+++.+.|++.|++.++.+ +....+|+.+..-+....++|.|...|+
T Consensus 404 --v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 404 --VALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred --HHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHH
Confidence 1222 233344432 3478899999999999999999999999999875 4477889988888899999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCcc
Q 035749 190 SMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD 269 (405)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 269 (405)
...... +.+-.+|..+...|.+.++++.|+-.|+++.+.+ +.+......++..+.+.|+.++|+.+++++.... +.|
T Consensus 480 ~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn 556 (638)
T KOG1126|consen 480 KALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKN 556 (638)
T ss_pred hhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCC
Confidence 998664 3455567778899999999999999999999864 3356667778888999999999999999999875 567
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC
Q 035749 270 TWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG 334 (405)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (405)
+......+..+...+++++|+..++++++.- |.+..++..++..|.+.|+.+.|+.-|.-+.+.
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 7777777888888999999999999998863 567788999999999999999999999887764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.4e-14 Score=110.98 Aligned_cols=286 Identities=12% Similarity=0.078 Sum_probs=165.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHH
Q 035749 73 EGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQL 152 (405)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (405)
.|+|.+|+++..+..+.+ +.....|..-+++.-+.|+.+.+-.++.+.-+....++........+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466777777666655554 2234445555556666667777777666666553344555555566666666777777666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChh-------hHHHHHHHHhhcCChHHHHHHHHH
Q 035749 153 LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVF-------SYSILINGYCKNKEIEGALSLYSE 225 (405)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~ 225 (405)
+..+.+.+ +..+.......++|.+.|++.....++..+.+.+.-.+.. +|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666654 4455566666666777777777777777666665433322 344444444444444444444444
Q ss_pred HHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccH
Q 035749 226 MLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDI 305 (405)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 305 (405)
.... .+.++..-..++.-+.++|+.++|.++..+..+++..|. +.. .-.+.+.++...-.+..++..+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 3332 233444445555566666666777666666666543333 111 122345555555555555555443 4455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 306 RSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
..+..++..|.+.+.+.+|...|+...+ ..|+..+|+.+..++.+.|+..+|.++.++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6666666666666667777666665555 355666666666666666666666666666553
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.7e-14 Score=113.64 Aligned_cols=366 Identities=15% Similarity=0.092 Sum_probs=250.7
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD-AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
+.....-+.++|++++|++.|.++++.. |+ +..|.....+|...|+|+++.+.-....+.+ |.-+..+..
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--------p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~R 188 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--------PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLR 188 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--------CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHH
Confidence 4556677889999999999999999864 55 7788999999999999999999888887763 222344444
Q ss_pred HHHHHHhcCCHHHHHH----------------------HHHH--------HHH-CC--CCccHhhHHHHHHHHHc-----
Q 035749 101 VIRGFCYANDSNEAKR----------------------LFIE--------MMD-QG--VQPNVVTFSVIMDELCK----- 142 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~----------------------~~~~--------~~~-~~--~~~~~~~~~~l~~~~~~----- 142 (405)
-..++-..|++++|+. ++.. -.+ .+ +-|+.....+....+..
T Consensus 189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 4555556666555442 1111 011 11 22333333333322211
Q ss_pred ---CCC-----HHHHHHHHHH------------HHHc------CCCCC---------HHHHHHHHHHHHccCCHHHHHHH
Q 035749 143 ---NGK-----MEEASQLLEL------------MIQI------GVRPN---------AFVYNTLMDGFCLTGRVNRAKEL 187 (405)
Q Consensus 143 ---~~~-----~~~a~~~~~~------------~~~~------~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~ 187 (405)
.++ ..++.+.+.. +.+. ....+ ..+.......+.-.|+.-.|..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 000 1122222111 1110 00111 11222223345567888899999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCC
Q 035749 188 FVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVA 267 (405)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 267 (405)
|+..+... +.+...|--+..+|....+.++....|++....+ +-++.+|..-.+...-.+++++|..-|++.+... +
T Consensus 349 ~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-p 425 (606)
T KOG0547|consen 349 FDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-P 425 (606)
T ss_pred HHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-h
Confidence 99998875 3333447778888999999999999999998875 4467788888888888999999999999998874 4
Q ss_pred ccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC-----ccHHH
Q 035749 268 ADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI-----ADVVT 342 (405)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 342 (405)
.+...+..+.-+..+.+.+++++..|++..+. +|..+..|+..+..+...++++.|.+.|+...+.... .+...
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 45666667777777889999999999999875 4777889999999999999999999999987653111 12222
Q ss_pred H--HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 343 Y--NIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 343 ~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
+ -.++. +.-.+++..|+.+++++.+.+.+ ....+..|...-.+.|+.++|+++|++..
T Consensus 505 lV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 505 LVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 22222 22458999999999999986322 45678899999999999999999999764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-13 Score=112.59 Aligned_cols=354 Identities=15% Similarity=0.081 Sum_probs=252.8
Q ss_pred ChHhHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHH
Q 035749 1 MEAAALFTKLKAFGCEPN-VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKA 79 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 79 (405)
++|++.+....+. .|+ +..|.....+|...|+|++.++.-.++++.+ |.-..++..-..++-..|++++|
T Consensus 132 ~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-------P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 132 DEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-------PDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred HHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-------cHHHHHHHHHHHHHHhhccHHHH
Confidence 5899999999987 577 8889999999999999999999999999875 34466777777888888887776
Q ss_pred HHHHH------------------H-------------HHhCC--CCCChHHHHHHHHHHHh--------cC---------
Q 035749 80 KELLL------------------Q-------------MKDKN--INPDVVTYNSVIRGFCY--------AN--------- 109 (405)
Q Consensus 80 ~~~~~------------------~-------------~~~~~--~~~~~~~~~~l~~~~~~--------~~--------- 109 (405)
+.-.. + +.+.+ +-|++....+....+.. .+
T Consensus 203 l~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~ 282 (606)
T KOG0547|consen 203 LFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAE 282 (606)
T ss_pred HHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHH
Confidence 54211 1 11011 12333332222222110 00
Q ss_pred -----------CHHHHHHHHHHHHHC---CCCcc---------HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH
Q 035749 110 -----------DSNEAKRLFIEMMDQ---GVQPN---------VVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAF 166 (405)
Q Consensus 110 -----------~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (405)
.+..|.+.+.+-... ....+ ..+.......+.-.|+.-.+..-|+..++.. +.+..
T Consensus 283 ~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-~~~~~ 361 (606)
T KOG0547|consen 283 ALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-PAFNS 361 (606)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC-cccch
Confidence 112222222211110 01111 1122222223445688889999999998875 33444
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLF 246 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (405)
.|..+..+|....+.++....|....+.+ +.++.+|..-.+.+.-.++++.|..=|++.++.. +.+...|..+.-+..
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHH
Confidence 48888889999999999999999999887 6688888888888888899999999999999864 335566777777778
Q ss_pred ccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCC-------ccHHHHHHHHHHHHhcC
Q 035749 247 EIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCE-------LDIRSYSCLIDGLCKSG 319 (405)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~ 319 (405)
+.+++++++..|++.++. +|..+..++.....+...++++.|.+.|+........ +.+.+.-.++..- -.+
T Consensus 440 r~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~ 517 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKE 517 (606)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhh
Confidence 999999999999999987 5778899999999999999999999999998876311 1122222222222 348
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
++..|..++++..+...+ ....|..|...-.+.|+.++|+++|++....
T Consensus 518 d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 518 DINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999886333 4567999999999999999999999987753
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-13 Score=110.19 Aligned_cols=286 Identities=12% Similarity=0.093 Sum_probs=231.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 035749 107 YANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKE 186 (405)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (405)
..|+|.+|++...+-.+.+.. ....|..-+.+....|+.+.+-.++.++.+..-.++........+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 469999999999998887655 3455667778888999999999999999887446667777788889999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh-------hHHHHHHHHHccccHHHHHHHHH
Q 035749 187 LFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV-------TYNTLFIGLFEIHQVERAFKLFD 259 (405)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 259 (405)
-+.++.+.+ +..+.......++|.+.|++.....++.++.+.+.-.+.. ++..++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999999886 6688889999999999999999999999999988655543 45556665556666666566666
Q ss_pred HHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCcc
Q 035749 260 EMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIAD 339 (405)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 339 (405)
..... ...++.....++.-+.+.|+.++|.++..+..+.+..|. ....-.+.+-++...-.+..+...+. .+.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 66543 355677788889999999999999999999998876555 12223456677777777777665543 2235
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 340 VVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 340 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
+..+..|...|.+.+.|.+|...|+...+ ..|+..+|..+..++.+.|+..+|.++.++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 68899999999999999999999998887 58999999999999999999999999887753
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-13 Score=120.59 Aligned_cols=266 Identities=14% Similarity=0.041 Sum_probs=175.5
Q ss_pred CChhHHHHHHHHHHh-----cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh---------cCChHHHHHH
Q 035749 17 PNVITYSTLINGLCR-----TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK---------EGFVDKAKEL 82 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~ 82 (405)
.+...|...+++... .+++++|+..|+++++.+ |.+...|..+..++.. .+++++|...
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-------P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~ 326 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-------PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEH 326 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHH
Confidence 344555566555322 245679999999999976 4456677777665542 2447888888
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 035749 83 LLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVR 162 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (405)
+++..+.+ |.+...+..+...+...|++++|...|++.++.++. +...+..+..++...|++++|...++++.+.+ +
T Consensus 327 ~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P 403 (553)
T PRK12370 327 AIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-P 403 (553)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 88888775 557788888888888889999999999988887533 56677778888888899999999999888874 2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc-hhhHHHH
Q 035749 163 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPT-VVTYNTL 241 (405)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 241 (405)
.+...+..++..+...|++++|...++++.....+.++..+..+..++...|+.++|...+.++... .|+ ....+.+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHH
Confidence 2333334444456667888888888888776542334556677778888888888888888887654 233 3334444
Q ss_pred HHHHHccccHHHHHHHHHHHHHcC-CCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHG-VAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL 299 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (405)
...+...| +++...++.+.+.. ..+... ......+.-.|+.+.+..+ +++.+.
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNP--GLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCc--hHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 55556666 36666666655421 011111 1133334444555555544 555543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-13 Score=121.75 Aligned_cols=249 Identities=12% Similarity=0.041 Sum_probs=183.8
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHH---------hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLC---------RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLC 71 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 71 (405)
++|+..|++..+.. |.+...|..+..++. ..+++++|...++++++.+ |.++.++..+...+.
T Consensus 278 ~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~~~~ 349 (553)
T PRK12370 278 QQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHH
Confidence 36888999998874 334556766665544 2345899999999999986 567889999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHH
Q 035749 72 KEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQ 151 (405)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 151 (405)
..|++++|...|++..+.+ |.+...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++|..
T Consensus 350 ~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHH
Confidence 9999999999999999885 556888999999999999999999999999987544 33333444555667899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCC-
Q 035749 152 LLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG- 230 (405)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 230 (405)
.++++.+...+.+...+..+..++...|++++|...+.++.... +.+....+.+...|...| +.|...++.+.+..
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 99998876423355667788889999999999999999986652 334455566666777777 47777777766531
Q ss_pred CCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC
Q 035749 231 IKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (405)
..+....+ ....+.-.|+.+.+..+ +++.+.+
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 11222222 33445556666666655 7776653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.9e-13 Score=110.42 Aligned_cols=284 Identities=14% Similarity=0.110 Sum_probs=181.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 035749 95 VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDG 174 (405)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (405)
......-..-+...+++.+..++.+...+.. ++....+..-+.++...|+..+-..+=.++.+.- |..+.+|..+.--
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 3334444455566677777777777776652 3455555555667777777666666666666552 5556677777777
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHH
Q 035749 175 FCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERA 254 (405)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (405)
|...|+.++|.+.|.+....+ +.-...|-.+...|.-.+..+.|+..|..+-+. ++-...-+--+..-|.+.++.+.|
T Consensus 322 Yl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 777777777777777776654 334556777777777777777777777766553 111222223344456667777777
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc----CCC-c-cHHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 255 FKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL----KCE-L-DIRSYSCLIDGLCKSGRLKIAWELF 328 (405)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (405)
.+.|.+..... |.|+..++.+.-.....+.+.+|..+|+..+.. ... + ...+++.++.+|.+.+.+++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 77777777653 556666666666666677777777777776522 111 1 2345677777777777777777777
Q ss_pred hhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 035749 329 HSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCI 386 (405)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (405)
++..... +-+..++..++-.|...|+++.|++.|.+.+. +.|+..+...++..+.
T Consensus 479 q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 479 QKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 7766542 33677777777777777777777777777765 4666655555555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-12 Score=106.53 Aligned_cols=366 Identities=11% Similarity=-0.009 Sum_probs=240.8
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-NINPDVVTYNS 100 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 100 (405)
+..-...|....+.++|...|.+++..+ ....+.+..++....-. ..+-..+++.+.-. ...-+......
T Consensus 144 c~lRgk~y~al~n~~~ar~~Y~~Al~~D-------~~c~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~ 214 (611)
T KOG1173|consen 144 CYLRGKVYVALDNREEARDKYKEALLAD-------AKCFEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEI 214 (611)
T ss_pred eeeeeehhhhhccHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHH
Confidence 3444556777778888888888887544 22334444444443322 12223333321100 01123333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (405)
+.....-...-+.....-.+..-.+..-+.........-+...+++.+..++.+.+.+.. ++....+..-|.++...|+
T Consensus 215 lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~ 293 (611)
T KOG1173|consen 215 LYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGK 293 (611)
T ss_pred HHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcc
Confidence 333221111111111111111122334466666677777888888888888888888774 6666666666678888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHH
Q 035749 181 VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDE 260 (405)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (405)
..+-..+-.++.+.- |..+.+|-.+.-.|...|+..+|.+.|.+....+.. =...|-....+|.-.+..++|+..+..
T Consensus 294 ~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 294 SNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred cchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 888777777777764 667778888888888888889999988887664311 123566777788888888888888887
Q ss_pred HHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC-----
Q 035749 261 MQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGV----- 335 (405)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 335 (405)
+.+.- +.....+-.+..-|.+.++.+.|.++|.++.... |.|+.+.+.+.......+.+.+|..+|+......
T Consensus 372 Aarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 372 AARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred HHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence 76642 2233334445566777888888988888887764 6778888888888888888888888887754210
Q ss_pred -cCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 336 -LIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 336 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
..--..+++.|+.+|.+.+.+++|+..+++.+.. .+.+..++.++.-.|...|+++.|.+.|++..
T Consensus 450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 1113456788888888889999999998888876 45578888888888888899999888888764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-14 Score=110.03 Aligned_cols=230 Identities=14% Similarity=0.058 Sum_probs=198.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHc
Q 035749 168 YNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFE 247 (405)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (405)
-+.+.++|.+.|.+.+|.+.++..... .|-+.+|..|...|.+..++..|+.++.+.++. ++.++.....+.+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 367889999999999999999998877 678889999999999999999999999998876 34455555667788889
Q ss_pred cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 035749 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWEL 327 (405)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 327 (405)
.++.++|.++++...+.. +.+...+..+...|.-.++++-|+.+++++...| ..++..|..+.-+|...+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998875 6678888888888999999999999999999999 56889999999999999999999999
Q ss_pred HhhccCCCcCcc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 328 FHSLPRGVLIAD--VVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 328 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
|++.....-.|+ ..+|-.+....+..|++..|.+.|+-.+..+ ..+...++.|...-.+.|+.++|+.++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 988765433333 5678889988999999999999999998873 44678899999889999999999999987654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-13 Score=106.31 Aligned_cols=199 Identities=17% Similarity=0.100 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 4445555555555555555555555554432 333444455555555555555555555555544222 33444445555
Q ss_pred HHcCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
+...|++++|...+++..+... +.....+..+..++...|++++|...+.+..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555544321 1123344445555555566666666665555443 2334455555555556666666
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHH
Q 035749 219 ALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQ 262 (405)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (405)
|...+++.... .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666655544 12233444444555555566666655555444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-13 Score=105.98 Aligned_cols=235 Identities=14% Similarity=0.004 Sum_probs=185.9
Q ss_pred cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 035749 129 NVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILIN 208 (405)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 208 (405)
|..--+.+.++|.+.|.+.+|.+.++..++. .|-+.+|..|.+.|.+..++..|+.++.+-.+.- |.++.......+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHH
Confidence 4444467788888999999999988888776 5677788888889999999999999888887763 445555566777
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHH
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE 288 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 288 (405)
.+-..++.++|.++|+...+.. +.+......+...|.-.++++.|+.++++++..| ..++..|..+.-+|...++++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhh
Confidence 7888888899999998888763 4456666666777888888999999999998888 4578888888888888889999
Q ss_pred HHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 289 ALELFRTLRILKCELD--IRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDM 366 (405)
Q Consensus 289 a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 366 (405)
++.-|+++...-..|+ ..+|..+.......|++..|.+.|+-...+.. .+...++.|...-.+.|+.++|..++..+
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9888888876543343 45688888888888999999999988776532 36788888888888899999999999888
Q ss_pred HhC
Q 035749 367 EAK 369 (405)
Q Consensus 367 ~~~ 369 (405)
...
T Consensus 456 ~s~ 458 (478)
T KOG1129|consen 456 KSV 458 (478)
T ss_pred hhh
Confidence 764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.2e-12 Score=102.44 Aligned_cols=204 Identities=14% Similarity=0.046 Sum_probs=171.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 035749 92 NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTL 171 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (405)
......+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~ 105 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY 105 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 34467788899999999999999999999987643 357788888999999999999999999999875 5567788889
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHcccc
Q 035749 172 MDGFCLTGRVNRAKELFVSMESMGC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQ 250 (405)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (405)
...+...|++++|...+++...... +.....+..+...+...|++++|...+.+..... +.+...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence 9999999999999999999987532 2345567778889999999999999999998863 3345678888899999999
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 035749 251 VERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL 299 (405)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (405)
+++|...+++.... .+.+...+......+...|+.++|..+.+.+...
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999876 3556677777888888999999999998877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-10 Score=99.30 Aligned_cols=383 Identities=15% Similarity=0.043 Sum_probs=266.9
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 035749 8 TKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMK 87 (405)
Q Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (405)
..+....+.-++..|..+.-++...|+++.+.+.|++....- -.....|..+...+...|.-..|+.+++.-.
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------~~~~e~w~~~als~saag~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------FGEHERWYQLALSYSAAGSDSKAVNLLRESL 384 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhhHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence 334444456788899999999999999999999999987542 3456789999999999999999999998876
Q ss_pred hCCC-CCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CccHhhHHHHHHHHHcC-----------CCHHHHH
Q 035749 88 DKNI-NPDVVTYNSVIRGFC-YANDSNEAKRLFIEMMDQ--GV--QPNVVTFSVIMDELCKN-----------GKMEEAS 150 (405)
Q Consensus 88 ~~~~-~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~ 150 (405)
...- ++++..+-.....|. +.+..++++++-.+.+.. +. ......+..+.-+|... ....++.
T Consensus 385 ~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 385 KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 5432 334444444444444 446777777777776652 11 11233444444444321 1246788
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 035749 151 QLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (405)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (405)
+.+++..+.+ +.|+.+...+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+.....-
T Consensus 465 qale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 465 QALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 8888888876 455566556666788899999999999999998667889999999999999999999999998876641
Q ss_pred CCCc---------------------hhhHHHHHHHHH-----------------------ccccHHHHHHHHHHHH----
Q 035749 231 IKPT---------------------VVTYNTLFIGLF-----------------------EIHQVERAFKLFDEMQ---- 262 (405)
Q Consensus 231 ~~~~---------------------~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~---- 262 (405)
|+ ..|...++..+- ..++..++.+....+.
T Consensus 544 --~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 544 --GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred --hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 11 011111111111 0001111111111110
Q ss_pred ----HcC---------CC--cc------HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH
Q 035749 263 ----RHG---------VA--AD------TWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRL 321 (405)
Q Consensus 263 ----~~~---------~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (405)
..+ .. |+ ...+......+...+..++|...+.++.... +.....|...+..+...|..
T Consensus 622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhh
Confidence 000 00 11 1123344556677788888888887777654 66778888888999999999
Q ss_pred HHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHH
Q 035749 322 KIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD--LFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLH 399 (405)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 399 (405)
.+|.+.|....... +.++....++..++.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.++|.++|.
T Consensus 701 ~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 701 EEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 99999998887642 2257788899999999998887877 999999874 5588999999999999999999999998
Q ss_pred Hhhh
Q 035749 400 RMDE 403 (405)
Q Consensus 400 ~~~~ 403 (405)
...+
T Consensus 779 aa~q 782 (799)
T KOG4162|consen 779 AALQ 782 (799)
T ss_pred HHHh
Confidence 7654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-11 Score=105.44 Aligned_cols=297 Identities=15% Similarity=0.122 Sum_probs=214.9
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
..-.....+...|++++|++.+++-... +.............+.+.|+.++|..+|..+++.+ |.+..-|..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~ 77 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRG 77 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH
Confidence 3444556778999999999999886654 45667788899999999999999999999999986 555666666
Q ss_pred HHHHHHhc-----CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 035749 101 VIRGFCYA-----NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKM-EEASQLLELMIQIGVRPNAFVYNTLMDG 174 (405)
Q Consensus 101 l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (405)
+..+.... .+.+....+|+++...- |.......+.-.+.....+ ..+...+..+...|+| .+|..+-..
T Consensus 78 L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~L 152 (517)
T PF12569_consen 78 LEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPL 152 (517)
T ss_pred HHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHH
Confidence 66665222 25677888999887653 3434433333333332233 3455667777888854 356666666
Q ss_pred HHccCCHHHHHHHHHHHHhc----C----------CCCCh--hhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhH
Q 035749 175 FCLTGRVNRAKELFVSMESM----G----------CKHNV--FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTY 238 (405)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (405)
|....+..-...++...... + -+|+. .++..+.+.|...|++++|++.+++.+... +..+..|
T Consensus 153 y~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely 231 (517)
T PF12569_consen 153 YKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELY 231 (517)
T ss_pred HcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 66555555555555554322 1 12333 345667888999999999999999999973 2236678
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccH--------HHHHH
Q 035749 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDI--------RSYSC 310 (405)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~ 310 (405)
..-...+-+.|++.+|...++.....+ ..|...-+..+..+.+.|+.++|.+++......+..|.. .....
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e 310 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETE 310 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHH
Confidence 888889999999999999999999886 567778888888999999999999999998776543322 22355
Q ss_pred HHHHHHhcCCHHHHHHHHhhcc
Q 035749 311 LIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
.+.+|.+.|++..|++.|..+.
T Consensus 311 ~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 311 CAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 6778999999999988776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-10 Score=99.97 Aligned_cols=299 Identities=18% Similarity=0.110 Sum_probs=213.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (405)
...-....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++. |...|..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHh
Confidence 3444455678899999999999886554 4555677778899999999999999999999998643 5556666666552
Q ss_pred c-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 035749 142 K-----NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV-NRAKELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (405)
Q Consensus 142 ~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (405)
- ..+.+....+++.+... -|.......+.-.+.....+ ..+..++..+...|+| .+++.+-..|....+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 2 23578888889888765 24444443333222222223 3455566667777754 356666666665555
Q ss_pred hHHHHHHHHHHHhC----C----------CCCch--hhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 035749 216 IEGALSLYSEMLSK----G----------IKPTV--VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDG 279 (405)
Q Consensus 216 ~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (405)
.+-..+++...... + -+|+. .++..+...|...|++++|+.+++..+++. |..+..|..-...
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 55556666655432 1 12333 244566778889999999999999999984 4457788888999
Q ss_pred HhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccH------HHH--HHHHHHHH
Q 035749 280 LCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADV------VTY--NIMIHALC 351 (405)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~--~~l~~~~~ 351 (405)
+-..|++.+|.+.++.++..+ .-|..+-+..+..+.++|+.++|.+++....+.+..|.. ..| ...+.+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887 557777777888899999999999999988776543321 122 34467889
Q ss_pred cCCCHHHHHHHHHHHHhC
Q 035749 352 ADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 352 ~~g~~~~A~~~~~~~~~~ 369 (405)
+.|++..|++.|..+.+.
T Consensus 317 r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 999999998877776653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.1e-10 Score=94.08 Aligned_cols=364 Identities=13% Similarity=0.073 Sum_probs=180.8
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...|+.+.-.+....++++|++.|..++..+ +.|..+|..+...-++.++++........+.+.. +.....
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~ 145 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRAS 145 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHH
Confidence 34455555555555555555555555555543 4445555555555555555555555554444432 223444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCccHhhHHHHH------HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH-H
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQG-VQPNVVTFSVIM------DELCKNGKMEEASQLLELMIQIGVRPNAFVY-N 169 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 169 (405)
|..++.++.-.|+...|..+++...+.. -.|+...+.... ....+.|..++|.+.+...... ..|...+ .
T Consensus 146 w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e 223 (700)
T KOG1156|consen 146 WIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhh
Confidence 5555555555566666666555555442 123333332211 1223445555555544433222 1111111 2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHhhcCChHHHH-HHHHHHHhCCCCCchhhHHHHHHHHHc
Q 035749 170 TLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYS-ILINGYCKNKEIEGAL-SLYSEMLSKGIKPTVVTYNTLFIGLFE 247 (405)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (405)
.-...+.+.++.++|..++..+... .||...|. .+..++.+..+.-++. .+|....+. .|-......+-.....
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLN 299 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhC
Confidence 3334455566666666666666555 23333333 2333332222222222 333333332 1111111111111111
Q ss_pred -cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHH--------hcC----------CCccHH--
Q 035749 248 -IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLR--------ILK----------CELDIR-- 306 (405)
Q Consensus 248 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~----------~~~~~~-- 306 (405)
.+-.+..-.++..+.+.|+++-. ..+...|-... ++- +++++. ..+ -+|...
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~---k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllW 372 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPE---KVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLW 372 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchh---HhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHH
Confidence 11223334444555555544322 22222221111 111 222221 000 144443
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 035749 307 SYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCI 386 (405)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (405)
++..++..+-..|+++.|...++....+. +.-+..|..-.+.+...|++++|...+++..+.+ .+|...-..-+.-..
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 34566777888999999999999988862 2235566666788889999999999999998864 345544445566677
Q ss_pred ccCchhHHHHHHHHhhhc
Q 035749 387 RNNETSKVVELLHRMDER 404 (405)
Q Consensus 387 ~~g~~~~a~~~~~~~~~~ 404 (405)
++++.++|.++.-.+...
T Consensus 451 rAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HccccHHHHHHHHHhhhc
Confidence 888888888888776654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.7e-11 Score=93.01 Aligned_cols=349 Identities=13% Similarity=0.124 Sum_probs=176.4
Q ss_pred HHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 035749 25 LINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRG 104 (405)
Q Consensus 25 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (405)
+..++.+.|++++|...+..+.+.. .++...+..|..++.-.|.+.+|..+-.+..+ ++.....+...
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-------~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhl 130 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-------DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHL 130 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-------CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHH
Confidence 4455566666666666666655543 34455555555555555666666655443322 33333444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCCHHH
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNT-LMDGFCLTGRVNR 183 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~ 183 (405)
.-+.|+-++-...-+.+.+. ...-.++.......-.+.+|++++.+.+.. .|.-...+. +.-+|.+..-++-
T Consensus 131 ahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydv 203 (557)
T KOG3785|consen 131 AHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDV 203 (557)
T ss_pred HHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhh
Confidence 44555544444443333221 122233444444555678888888888765 344444443 3446677777777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh-----------------------------------HHHHHHHHHHHh
Q 035749 184 AKELFVSMESMGCKHNVFSYSILINGYCKNKEI-----------------------------------EGALSLYSEMLS 228 (405)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------------------~~a~~~~~~~~~ 228 (405)
+.++++-..+.- +.++.+.|..+....+.-+- +.|++++-.+..
T Consensus 204 sqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~ 282 (557)
T KOG3785|consen 204 SQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK 282 (557)
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh
Confidence 777777766552 34444444444333332111 112222222111
Q ss_pred CCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHH-hc----CCChHHHHHHHHHHHhcCCCc
Q 035749 229 KGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGL-CK----NGYIVEALELFRTLRILKCEL 303 (405)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~----~~~~~~a~~~~~~~~~~~~~~ 303 (405)
. -| ..-..++..|.+.+++.+|..+.+++... .|....+..++.+- .+ .....-|.+.|+-.-..+...
T Consensus 283 ~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec 356 (557)
T KOG3785|consen 283 H--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC 356 (557)
T ss_pred h--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 1 11 12234455678889999999888776432 33333333333221 11 112333444444332222111
Q ss_pred -----------------------------------cHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHH
Q 035749 304 -----------------------------------DIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIH 348 (405)
Q Consensus 304 -----------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (405)
|......++++++..|++.+|.++|-.+....++.+..-...|.+
T Consensus 357 DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LAr 436 (557)
T KOG3785|consen 357 DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLAR 436 (557)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHH
Confidence 111123455666667777777777766655444433333345566
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccCchhHHHHHHHHhh
Q 035749 349 ALCADGKMDKAHDLFLDMEAKGVAPDCVAF-NTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
+|.+.++++.|+.++-++-. +.+.... ..+...|.+.+++--|-+.|+.+.
T Consensus 437 Cyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 77777777777666544322 2222222 333456777777766666666554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-12 Score=110.58 Aligned_cols=255 Identities=17% Similarity=0.204 Sum_probs=170.7
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 035749 5 ALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLL 84 (405)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (405)
.+|-.+...|+.|+..+|.++|..|+..|+.+.|- +|.-|.-.. .+.+...|+.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks------Lpv~e~vf~~lv~sh~~And~Enpk---- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS------LPVREGVFRGLVASHKEANDAENPK---- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc------ccccchhHHHHHhcccccccccCCC----
Confidence 56778888999999999999999999999999998 999988776 6778889999999888888887765
Q ss_pred HHHhCCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHHH----HCCCCccHhhHH--------------HHHHHHHcC
Q 035749 85 QMKDKNINPDVVTYNSVIRGFCYANDSNE---AKRLFIEMM----DQGVQPNVVTFS--------------VIMDELCKN 143 (405)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~~--------------~l~~~~~~~ 143 (405)
.|.+.+|..|..+|...||+.. ..+.+..+. ..|+......+- ..+......
T Consensus 80 -------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~e 152 (1088)
T KOG4318|consen 80 -------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLE 152 (1088)
T ss_pred -------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHH
Confidence 5788999999999999998754 222222221 122221111111 112222233
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHH
Q 035749 144 GKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLY 223 (405)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (405)
|-++.+++++..+...... . .+..+++-+.... .-..++........-.+++.++..++..-...|+.+.|..++
T Consensus 153 glwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 4444444444333221100 0 1111233222222 223333333332222578888888888888888889999999
Q ss_pred HHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 035749 224 SEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (405)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 285 (405)
..|.+.|++.+..-|..++-+ .++...+..++.-|.+.|+.|+..|+...+..+..+|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888888777766666554 77777888888888888888888888887777777554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-11 Score=105.48 Aligned_cols=244 Identities=19% Similarity=0.126 Sum_probs=157.4
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCC-CCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGN-GEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-----N-- 90 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-- 90 (405)
..+...+...|...|++++|..+++.+++.- ..+|...+.-....+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 3567779999999999999999999988761 0001002222344556888899999999999999988643 1
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-Ccc-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC---
Q 035749 91 INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ-----GV-QPN-VVTFSVIMDELCKNGKMEEASQLLELMIQIG--- 160 (405)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 160 (405)
.+.-..+++.|..+|.+.|++++|...++...+. +. .|. ...++.+...+...+++++|..+++...+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1223456777888899999998888887776542 11 112 2235556667777888888888877655431
Q ss_pred CC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC-------CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 161 VR----PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG-------CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 161 ~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
+. ....+++.+...|...|++++|.++++++.... ..-....++.+...|.+.+++.+|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 11 123467777777778888888877777765431 1112335566667777777777777666654321
Q ss_pred ----CC-CC-chhhHHHHHHHHHccccHHHHHHHHHHHH
Q 035749 230 ----GI-KP-TVVTYNTLFIGLFEIHQVERAFKLFDEMQ 262 (405)
Q Consensus 230 ----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (405)
|+ .| ...+|..|...|...|+++.|.++...+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 11 23456666667777777777776666554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-11 Score=106.22 Aligned_cols=241 Identities=18% Similarity=0.145 Sum_probs=177.8
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-----CC-CCChh-hHHHHHHHHhhcCChHHHHHHHHHHHhC-----
Q 035749 162 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM-----GC-KHNVF-SYSILINGYCKNKEIEGALSLYSEMLSK----- 229 (405)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 229 (405)
|.-..+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 334456677889999999999999999987654 11 22222 3445778899999999999999998753
Q ss_pred C-CCCc-hhhHHHHHHHHHccccHHHHHHHHHHHHHc-----CC-Ccc-HHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 035749 230 G-IKPT-VVTYNTLFIGLFEIHQVERAFKLFDEMQRH-----GV-AAD-TWAYRTFIDGLCKNGYIVEALELFRTLRILK 300 (405)
Q Consensus 230 ~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 300 (405)
| ..|. ..+++.|..+|.+.|++++|..+++.+.+- +. .|. ...+..+...+...+++++|..+++...+.-
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 1222 346778888899999999998888876531 11 122 2346667778888999999999998765431
Q ss_pred ---CC----ccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC-------cCccHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 301 ---CE----LDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGV-------LIADVVTYNIMIHALCADGKMDKAHDLFLDM 366 (405)
Q Consensus 301 ---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 366 (405)
+. .-..++..+...|...|++++|.+++++++... ..-....++.+...|.+.+++.+|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 11 224678999999999999999999998875421 1112456788999999999999999998876
Q ss_pred HhC----C--CCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 367 EAK----G--VAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 367 ~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
... | .+....+|..|...|.+.|++++|.++.+.+.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 543 2 22334688999999999999999999988765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-10 Score=90.85 Aligned_cols=271 Identities=12% Similarity=0.035 Sum_probs=181.7
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 035749 91 INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNT 170 (405)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (405)
++.|+.....+..++...|+..+|+..|++....++. +........-.+...|+.+....+...+.... +-+...|..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 4567777777888888888888888888877654221 33333344445566777777777777766543 233334444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHcccc
Q 035749 171 LMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQ 250 (405)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (405)
-+......+++..|+.+-++.++.+ +.+...+-.-...+...+++++|.-.|+...... +.+...|..++.+|...|.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 4455556677888888887777664 4456666666677777888888888888776642 3466778888888888888
Q ss_pred HHHHHHHHHHHHHcCCCccHHHHHHHH-HH-HhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 251 VERAFKLFDEMQRHGVAADTWAYRTFI-DG-LCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELF 328 (405)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (405)
+.+|...-....+. .+.+..++..+. .. +.....-++|.++++...... |.-....+.++..+...|..+.++.++
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHH
Confidence 88887776665554 244555554442 22 223334567777777776653 334456677777788888888888888
Q ss_pred hhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 329 HSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 329 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
++.... .||....+.|...+...+.+++|++.|..++..
T Consensus 462 e~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 462 EKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 877653 567777788888888888888888888887765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.2e-09 Score=88.82 Aligned_cols=389 Identities=10% Similarity=0.075 Sum_probs=250.7
Q ss_pred HhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChH---HH
Q 035749 3 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVD---KA 79 (405)
Q Consensus 3 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a 79 (405)
++.++++.++. ++..-+-.|..++..+++++|.+.+...+....-.+...+.+...|..+.....+..+.- ..
T Consensus 157 s~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv 232 (835)
T KOG2047|consen 157 SIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV 232 (835)
T ss_pred HHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH
Confidence 45566666643 344466778888899999999999988876543322223556667777777666654332 23
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC----------------
Q 035749 80 KELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN---------------- 143 (405)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------- 143 (405)
..+++.+...-...-...|.+|...|++.|.+++|.++|++.+.. ..+..-|+.+..+|+.-
T Consensus 233 daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~ 310 (835)
T KOG2047|consen 233 DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEES 310 (835)
T ss_pred HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 344444443311112457899999999999999999999998875 22444444444444321
Q ss_pred C------CHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC------Ch
Q 035749 144 G------KMEEASQLLELMIQIG-----------VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH------NV 200 (405)
Q Consensus 144 ~------~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~ 200 (405)
+ +++-....|+.+.... -+-++..|..-.. ...|+..+....+.++...- .| -.
T Consensus 311 ~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~ 387 (835)
T KOG2047|consen 311 GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPG 387 (835)
T ss_pred cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChh
Confidence 1 1223333444443321 0223333333333 34566777777777776531 22 23
Q ss_pred hhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc---hhhHHHHHHHHHccccHHHHHHHHHHHHHcCCC----------
Q 035749 201 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPT---VVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVA---------- 267 (405)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------- 267 (405)
..|..+...|-..|+.+.|..+|++......+.- ..+|......-.+..+++.|+++++......-.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4688889999999999999999999987643221 235555566666788899999998887542111
Q ss_pred -c------cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCcc-
Q 035749 268 -A------DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIAD- 339 (405)
Q Consensus 268 -~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 339 (405)
+ +...+...++.....|-++....+++++....+ .++......+..+....-++++.+++++-+..-..|+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 1 233455566666677899999999999988764 4555555555566677779999999998776544444
Q ss_pred HHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHccCchhHHHHHHHHhh
Q 035749 340 VVTYNIMIHALCA---DGKMDKAHDLFLDMEAKGVAPDCVA--FNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 340 ~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
...|+..+..+.+ .-+.+.|..+|+++++ |.+|...- |......-.+.|-...|+.++++..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3567777776664 3478999999999999 56665432 2222333446688888888888764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.7e-10 Score=90.43 Aligned_cols=292 Identities=13% Similarity=0.033 Sum_probs=219.7
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN 109 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (405)
+..++...|...+-.+..... ++.+......+..++...|+.++|+..|++....+ +.+..........+.+.|
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~-----lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg 280 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTT-----LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEG 280 (564)
T ss_pred HHhcccchhhhHHHHHHhhcc-----CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhcc
Confidence 345555555555544433221 57788999999999999999999999999988653 333333444455566788
Q ss_pred CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 035749 110 DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV 189 (405)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (405)
+.+....+...+.... ..+...|..-+.......+++.|+.+-++.++.+ +.+...+..-...+...++.++|.-.|+
T Consensus 281 ~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 281 GCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred CHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHH
Confidence 8888888877776542 2244445555556667789999999999998875 4556666666778889999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHH-HH-HHccccHHHHHHHHHHHHHcCCC
Q 035749 190 SMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLF-IG-LFEIHQVERAFKLFDEMQRHGVA 267 (405)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~~~~~~a~~~~~~~~~~~~~ 267 (405)
...... |.+..+|..|+..|...|++.+|.-.-+..... ++.+..+...+. .. +....--++|.++++..+... |
T Consensus 359 ~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P 435 (564)
T KOG1174|consen 359 TAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-P 435 (564)
T ss_pred HHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-C
Confidence 998774 568899999999999999999998877766554 233455555442 22 223334688999999888763 3
Q ss_pred ccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC
Q 035749 268 ADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG 334 (405)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (405)
.-......+...+...|..+.+..++++.... .||....+.++..+...+.+.+|.+.|....+.
T Consensus 436 ~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 436 IYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred ccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34567778888999999999999999998865 689999999999999999999999999988774
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-10 Score=94.90 Aligned_cols=223 Identities=14% Similarity=-0.009 Sum_probs=127.2
Q ss_pred hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC
Q 035749 31 RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAND 110 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (405)
..+..+.++.-+.+++...+.. ....+..|..+...+...|++++|...|++..+.. |.++..|+.+...+...|+
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~---~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLT---DEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred CchHHHHHHHHHHHHHccccCC---cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 3455666777777777543100 11124557777777777777877777777777664 4467777777777777778
Q ss_pred HHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 035749 111 SNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVS 190 (405)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (405)
+++|...|++.++..+. +..++..+..++...|++++|.+.++...+.. |+..........+...+++++|...+.+
T Consensus 114 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 114 FDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 88777777777765333 45566667777777777777777777777653 3222122222233455667777777755
Q ss_pred HHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC---CC---CCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 191 MESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK---GI---KPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
..... +++...+ .+ .....|+...+ ..+..+.+. .+ +.....|..+...+...|++++|...|++..+.
T Consensus 191 ~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44322 2222221 12 22223444333 233333321 00 011235556666666666666666666666655
Q ss_pred C
Q 035749 265 G 265 (405)
Q Consensus 265 ~ 265 (405)
+
T Consensus 266 ~ 266 (296)
T PRK11189 266 N 266 (296)
T ss_pred C
Confidence 4
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-12 Score=110.30 Aligned_cols=90 Identities=22% Similarity=0.320 Sum_probs=61.6
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
++-.+...|+.|+..+|..+|.-|+..|+++.|- +|.-|.-...+.+...++.++......++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3445556677777777777777777777777776 7776666656666677777777666666665554
Q ss_pred CCCHHHHHHHHHHHHccCCHHH
Q 035749 162 RPNAFVYNTLMDGFCLTGRVNR 183 (405)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~ 183 (405)
.|...+|..|...|...||...
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH
Confidence 5666777777777777777554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-10 Score=85.47 Aligned_cols=201 Identities=13% Similarity=0.022 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
..+...|...|...|++..|..-+++.++.. |.+..+|..+...|.+.|+.+.|.+.|++.++..+. +....|.....
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHH
Confidence 3456667777778888888888888877764 456677777777788888888888888877776443 66677777777
Q ss_pred HHcCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 140 LCKNGKMEEASQLLELMIQIG-VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
+|..|++++|...|++..... ...-..+|..+.-+..+.|+++.|...|++..+.. +..+.+...+.....+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 777788888888887777653 22234567777777777788888888887777764 4455566667777777777777
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 219 ALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
|...++.....+. ++..+....++.--..|+.+.+.++=..+.+.
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777777766654 66666666666666777777666665555543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-10 Score=85.62 Aligned_cols=206 Identities=14% Similarity=0.036 Sum_probs=175.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
+...|.-.|.+.|++..|..-++++++.+ |.+..+|..+...|.+.|..+.|.+.|++..+.. |.+..+.|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNN 108 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-------PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhh
Confidence 45667778999999999999999999987 5678899999999999999999999999999875 667899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQG-VQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (405)
....+|..|++++|...|++..... ...-..+|..+.-+..+.|+.+.|...|++.++.. +........+.......|
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAG 187 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcc
Confidence 9999999999999999999998753 22235678888889999999999999999999985 555667788899999999
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhH
Q 035749 180 RVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTY 238 (405)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (405)
++-.|...++.....+ .++..+.-..|+.--..|+.+.+-+.=.++... .|...-+
T Consensus 188 ~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 188 DYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred cchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 9999999999998877 478888888888888899998888777666664 3444333
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-10 Score=95.76 Aligned_cols=214 Identities=12% Similarity=0.037 Sum_probs=156.0
Q ss_pred hHhHHHHHHhhcC-CCCC--hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHH
Q 035749 2 EAAALFTKLKAFG-CEPN--VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDK 78 (405)
Q Consensus 2 ~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (405)
.++.-+..++... ..|+ ...|..+...+...|++++|+..|+++++.+ |.++..|+.+...+...|++++
T Consensus 44 ~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 44 VILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred HHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCCCHHH
Confidence 4566666676532 1222 3568888889999999999999999999986 5678999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 035749 79 AKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ 158 (405)
Q Consensus 79 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (405)
|...|++..+.. |.+..+|..+..++...|++++|.+.|+...+..+. +. ........+...++.++|...+.+...
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999999874 446788899999999999999999999999986433 22 222222234556789999999977654
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc---CC---CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 035749 159 IGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM---GC---KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (405)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (405)
.. +++...+ .+ .....|+...+ ..+..+.+. .. +....+|..+...+.+.|++++|+..|++..+.+
T Consensus 194 ~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 42 3332222 22 23345555443 244444321 10 2234678999999999999999999999999874
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-09 Score=84.57 Aligned_cols=351 Identities=13% Similarity=0.095 Sum_probs=207.5
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|+.++..+.+.. .++...+-.+.-.+.-.|.+.+|..+-.++. .++-.-..+.....+.++-++..
T Consensus 74 ~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----------k~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 74 EEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----------KTPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----------CChHHHHHHHHHHHHhCcHHHHH
Confidence 47888898888765 6778888889988899999999999887753 33444455555566677777666
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHH-HHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSV-IMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.+.+.+.+. ..--.+|.......-.+.+|+++|.+.+..+ |+....+. +..+|.+..-++-+.+++.-.++.
T Consensus 142 ~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 142 TFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 666655442 2333344444444556788888888887653 33333333 344566777777777777666654
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--------------cC------------CCC-----ChhhHHHHHH
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES--------------MG------------CKH-----NVFSYSILIN 208 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~------------~~~-----~~~~~~~l~~ 208 (405)
++.++...+..+....+.-.-..|..-.+.+.+ .+ +-| -+.+--.|+-
T Consensus 215 -~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~i 293 (557)
T KOG3785|consen 215 -FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLII 293 (557)
T ss_pred -CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhee
Confidence 233333333333222221111111111111111 00 000 1122233444
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCchhh-----------------------------------------HHHHHHHHHc
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGIKPTVVT-----------------------------------------YNTLFIGLFE 247 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----------------------------------------~~~l~~~~~~ 247 (405)
.|.+.++..+|..+..++... .|-... -..+...+.-
T Consensus 294 YyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred eecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 556667777776666544221 111111 1222233333
Q ss_pred cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 035749 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWEL 327 (405)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 327 (405)
..++++++.++..+..-- ..|......+.++.+..|++.+|+++|-++....++.+..-...++++|.+.+.++.|+++
T Consensus 372 ~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 445555555555555442 2333344456788888999999999998887655444444556778899999999999999
Q ss_pred HhhccCCCcCccHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 035749 328 FHSLPRGVLIADVV-TYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFN 379 (405)
Q Consensus 328 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 379 (405)
+-++... .+.. ....+...|.+.+.+=-|-+.|+.+... .|++..|.
T Consensus 451 ~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 451 MLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred HHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 8776542 1222 2344456788999999999999888774 67777664
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.8e-09 Score=87.70 Aligned_cols=359 Identities=13% Similarity=0.041 Sum_probs=206.1
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
|..++.. ...+++.+.+++.+.+++.. +...++.....-.+...|+-++|.+......... .-+..+|..+
T Consensus 11 F~~~lk~-yE~kQYkkgLK~~~~iL~k~-------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~ 81 (700)
T KOG1156|consen 11 FRRALKC-YETKQYKKGLKLIKQILKKF-------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVL 81 (700)
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHHHHhC-------CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHH
Confidence 3444443 36677777777777777753 4455666666666666777777777777666543 4466777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (405)
.-.+....++++|++.|......+.. |...+.-+.-.-++.|+++........+.+.. +.....|..++.++.-.|++
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766433 56666666666666677777666666666552 33344566666666677777
Q ss_pred HHHHHHHHHHHhcC-CCCChhhHHHHH------HHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHH
Q 035749 182 NRAKELFVSMESMG-CKHNVFSYSILI------NGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERA 254 (405)
Q Consensus 182 ~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (405)
..|..+++...+.. -.|+...+.... ....+.|..+.|.+.+...... +.-....-..-...+.+.+++++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 77777777765543 134444433222 2234456666666666554332 111111222334455666677777
Q ss_pred HHHHHHHHHcCCCccHHHH-HHHHHHHhcCCChHHHH-HHHHH----------------------------------HHh
Q 035749 255 FKLFDEMQRHGVAADTWAY-RTFIDGLCKNGYIVEAL-ELFRT----------------------------------LRI 298 (405)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~-~~~~~----------------------------------~~~ 298 (405)
..++..++..+ ||...| ..+..++.+..+..++. .+|.. ..+
T Consensus 239 ~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 239 VKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 77777666653 333332 22333332222222222 33333 333
Q ss_pred cCCCccHHHHHHHHHHHHhcCCHHHHHHHHhh--------ccCCC----------cCccHHHHH--HHHHHHHcCCCHHH
Q 035749 299 LKCELDIRSYSCLIDGLCKSGRLKIAWELFHS--------LPRGV----------LIADVVTYN--IMIHALCADGKMDK 358 (405)
Q Consensus 299 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~~----------~~~~~~~~~--~l~~~~~~~g~~~~ 358 (405)
.|+++- +..+...|- ++.+.- ++++ +...+ -+|....|. .++..+-+.|+++.
T Consensus 317 Kg~p~v---f~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 317 KGVPSV---FKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred cCCCch---hhhhHHHHh---chhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 333221 111211121 111111 2222 11111 145555554 45677889999999
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 359 AHDLFLDMEAKGVAPDC-VAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 359 A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
|...++.+.++ .|+. ..|..-.+.+...|+.++|..++++..+
T Consensus 390 A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 390 ALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred HHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 99999999986 5554 4566667889999999999999998764
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-08 Score=85.97 Aligned_cols=195 Identities=13% Similarity=0.019 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 035749 23 STLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVI 102 (405)
Q Consensus 23 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (405)
.+=++.+...|++++|.+...+++..+ |.+...+..-+.++++.+++++|+.+.+.-... ..+...+.--+
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKA 86 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKA 86 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHH
Confidence 334556677778888888888877754 455667777777777777787777554432211 11111111223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-------------------
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRP------------------- 163 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------- 163 (405)
.+..+.+..++|+..++-+-+ .+..+...-...+.+.|++++|..+|+.+.+.+.+.
T Consensus 87 Yc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 344466777777777662211 123355555666677777777777777764432110
Q ss_pred --------CHHHH---HHHHHHHHccCCHHHHHHHHHHHHhcCC------CCC-h-------hhHHHHHHHHhhcCChHH
Q 035749 164 --------NAFVY---NTLMDGFCLTGRVNRAKELFVSMESMGC------KHN-V-------FSYSILINGYCKNKEIEG 218 (405)
Q Consensus 164 --------~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~-~-------~~~~~l~~~~~~~~~~~~ 218 (405)
...+| ......+...|++.+|+++++.....+. ..+ . ..-..+...+-..|+-.+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 01122 2233455667888888888877722110 001 0 011234445566788888
Q ss_pred HHHHHHHHHhCC
Q 035749 219 ALSLYSEMLSKG 230 (405)
Q Consensus 219 a~~~~~~~~~~~ 230 (405)
|..+|...+...
T Consensus 243 a~~iy~~~i~~~ 254 (652)
T KOG2376|consen 243 ASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHhc
Confidence 888888777653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-09 Score=84.70 Aligned_cols=303 Identities=14% Similarity=0.131 Sum_probs=210.6
Q ss_pred CCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 035749 14 GCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP 93 (405)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 93 (405)
|+.....-+.+.+..+.+..+++.|++++..-.++. +.+......|..+|....++..|-+.|+++... .|
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P 75 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HP 75 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--Ch
Confidence 433344457778888888999999999999988875 457788899999999999999999999999875 45
Q ss_pred ChHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 035749 94 DVVTYNS-VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLM 172 (405)
Q Consensus 94 ~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (405)
...-|.. -.+.+.+.+.+.+|+++...|.+. ...-......-.......+++..+..++++....| +..+.+...
T Consensus 76 ~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~g 151 (459)
T KOG4340|consen 76 ELEQYRLYQAQSLYKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLG 151 (459)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccch
Confidence 4444443 356677889999999999888653 11111222222233456788888888888775433 455666666
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-------------Cchh---
Q 035749 173 DGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK-------------PTVV--- 236 (405)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--- 236 (405)
....+.|+++.|.+-|+...+.+.-.....|+.-+ +..+.++++.|++...+++++|++ ||..
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg 230 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG 230 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc
Confidence 77788999999999999988776555566777655 556678999999999998887643 1211
Q ss_pred ------------hHHHHHHHHHccccHHHHHHHHHHHHHc-CCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCc
Q 035749 237 ------------TYNTLFIGLFEIHQVERAFKLFDEMQRH-GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCEL 303 (405)
Q Consensus 237 ------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 303 (405)
.++.-...+.+.++++.|.+.+-.|..+ ....|+.++..+.-.- ..+++....+-+.-+.... |.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-Pf 308 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PF 308 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CC
Confidence 1222233456778888888888877533 1234566665544332 2355555555566666654 56
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 035749 304 DIRSYSCLIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
...++..++-.|++..-++-|.+++.+-.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 67788888889999988998888886543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-08 Score=85.40 Aligned_cols=371 Identities=10% Similarity=0.115 Sum_probs=186.6
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
..|...+..+..+|+.......|+.++..-+ +.....+|...+......+-++-++.+|++.++. ++..-+
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLp-----vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~e 173 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALP-----VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEARE 173 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCc-----hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHH
Confidence 3466666667778888888888888776543 3344567777777777777777888888877764 344466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC------CCccHhhHHHHHHHHHcCCCHHH---HHHHHHHHHHcCCCCCHHHHHH
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQG------VQPNVVTFSVIMDELCKNGKMEE---ASQLLELMIQIGVRPNAFVYNT 170 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~ 170 (405)
-.+..++..+++++|.+.+...+... .+.+-..|..+....++.-+.-. ...+++.+...-...-...|..
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCS 253 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHH
Confidence 66777777777777777776655321 11122233333332222211111 1111121111100001123344
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH----------------------------------------
Q 035749 171 LMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGY---------------------------------------- 210 (405)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---------------------------------------- 210 (405)
|..-|.+.|.+++|..+|++.... ..+..-|..+..+|
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 444444444444444444443322 11111111111111
Q ss_pred --------------------------hhcCChHHHHHHHHHHHhCCCCCc------hhhHHHHHHHHHccccHHHHHHHH
Q 035749 211 --------------------------CKNKEIEGALSLYSEMLSKGIKPT------VVTYNTLFIGLFEIHQVERAFKLF 258 (405)
Q Consensus 211 --------------------------~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~ 258 (405)
+..|+..+....|.++... +.|. ...|..+...|-..|+.+.|..+|
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 1123444455555555443 2221 123445555666667777777777
Q ss_pred HHHHHcCCCcc---HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCc-----------------cHHHHHHHHHHHHhc
Q 035749 259 DEMQRHGVAAD---TWAYRTFIDGLCKNGYIVEALELFRTLRILKCEL-----------------DIRSYSCLIDGLCKS 318 (405)
Q Consensus 259 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~ 318 (405)
++..+...+.- ..++..-...-.+..+++.|+++++.+.....+| +..+|...+..-...
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 76665432211 2334444444455666666776666654321111 122344444444556
Q ss_pred CCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH---ccCchhHH
Q 035749 319 GRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDC-VAFNTLMLGCI---RNNETSKV 394 (405)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~---~~g~~~~a 394 (405)
|-++....+++++.+..+. ++.........+-.+.-++++.+++++-+..=..|+. ..|+..+..+. ..-+.+.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 6666666666666654333 2222223333344555667777777666554223333 34555443333 33457888
Q ss_pred HHHHHHhhh
Q 035749 395 VELLHRMDE 403 (405)
Q Consensus 395 ~~~~~~~~~ 403 (405)
+.+|++..+
T Consensus 570 RdLFEqaL~ 578 (835)
T KOG2047|consen 570 RDLFEQALD 578 (835)
T ss_pred HHHHHHHHh
Confidence 888887765
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.4e-09 Score=90.17 Aligned_cols=358 Identities=12% Similarity=0.031 Sum_probs=244.9
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh-cCChHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK-EGFVDKAK 80 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~ 80 (405)
.+.+.|+..... .....+.|+.+.-.+...|.-..|+.+++......+ -+++...+......|.+ .+..++++
T Consensus 341 ~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~-----~ps~~s~~Lmasklc~e~l~~~eegl 414 (799)
T KOG4162|consen 341 VLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE-----QPSDISVLLMASKLCIERLKLVEEGL 414 (799)
T ss_pred HHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc-----CCCcchHHHHHHHHHHhchhhhhhHH
Confidence 345566666543 244667899999999999999999999998776542 24455556555555654 47777777
Q ss_pred HHHHHHHhC--C--CCCChHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCC
Q 035749 81 ELLLQMKDK--N--INPDVVTYNSVIRGFCYAN-----------DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGK 145 (405)
Q Consensus 81 ~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (405)
++-.++... + -...+..|..+.-+|...- ...++++.+++..+.+.. |......+.--|+..++
T Consensus 415 dYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~ 493 (799)
T KOG4162|consen 415 DYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQ 493 (799)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHh
Confidence 777776652 1 1223455655555554321 235777888888876544 44444455667788899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-C------------------ChhhHHHH
Q 035749 146 MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK-H------------------NVFSYSIL 206 (405)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~------------------~~~~~~~l 206 (405)
.+.|.+..++..+.+-..+...|..+.-++...+++.+|+.+.+.....-.. . ...+...+
T Consensus 494 l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~ 573 (799)
T KOG4162|consen 494 LTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHK 573 (799)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHH
Confidence 9999999999999866788899999999999999999999998876543101 0 01111111
Q ss_pred HHHHh-----------------------hcCChHHHHHHHHHHH--------hCC---------CC--Cch------hhH
Q 035749 207 INGYC-----------------------KNKEIEGALSLYSEML--------SKG---------IK--PTV------VTY 238 (405)
Q Consensus 207 ~~~~~-----------------------~~~~~~~a~~~~~~~~--------~~~---------~~--~~~------~~~ 238 (405)
+...- ...+..++.+....+. ..+ +. |+. ..|
T Consensus 574 L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lw 653 (799)
T KOG4162|consen 574 LALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLW 653 (799)
T ss_pred HHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHH
Confidence 11111 0011112222111111 000 01 111 122
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 035749 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKS 318 (405)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (405)
......+...+..++|...+.+..... +.....|......+...|.+++|.+.|......+ |.++....+++.++...
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHh
Confidence 334455667788888888888877653 5667778888888999999999999999998876 66788899999999999
Q ss_pred CCHHHHHH--HHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 319 GRLKIAWE--LFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 319 ~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
|+..-|.. ++..+.+.++ .+...|..+...+.+.|+.++|.+.|....+.
T Consensus 732 G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99887777 9999988743 48899999999999999999999999998764
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.6e-09 Score=89.26 Aligned_cols=201 Identities=13% Similarity=0.078 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD-AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
...|..+...+...|+.+.+.+.+.+..+... ...+ ..........+...|++++|.+.+++..+.. |.+...
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a 79 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALA-----ARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLA 79 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHH
Confidence 34556666666667777777777766665442 1111 2222333445566778888888888777653 334444
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035749 98 YNSVIRGFCY----ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMD 173 (405)
Q Consensus 98 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (405)
+.. ...+.. .+....+.+.+.... ...+........+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~ 156 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAH 156 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 432 222222 333444444443311 1111122333445556677777777777777777764 445566667777
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCC-CCh--hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 035749 174 GFCLTGRVNRAKELFVSMESMGCK-HNV--FSYSILINGYCKNKEIEGALSLYSEMLS 228 (405)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (405)
++...|++++|...+++....... ++. ..|..+...+...|++++|..++++...
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 777777777777777776654211 121 2344566677777777777777777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.4e-09 Score=88.20 Aligned_cols=309 Identities=11% Similarity=0.001 Sum_probs=183.7
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHH
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI-NPDV-VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSV 135 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (405)
.....|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++..+..+. +...+..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH
Confidence 4456777777778788888887777777654421 1121 22223344567789999999999998876332 4434332
Q ss_pred ---HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh
Q 035749 136 ---IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK 212 (405)
Q Consensus 136 ---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (405)
........+....+.+.+... ....+........+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 111122345555565555541 11122233444566678889999999999999998875 5567778888899999
Q ss_pred cCChHHHHHHHHHHHhCCC-CCch--hhHHHHHHHHHccccHHHHHHHHHHHHHcCC-CccHHHH-H--HHHHHHhcCCC
Q 035749 213 NKEIEGALSLYSEMLSKGI-KPTV--VTYNTLFIGLFEIHQVERAFKLFDEMQRHGV-AADTWAY-R--TFIDGLCKNGY 285 (405)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~ 285 (405)
.|++++|...+++...... .|+. ..+..+...+...|++++|..++++...... .+..... . .++..+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999998877532 1222 2345677788899999999999998864321 1111111 1 22333333443
Q ss_pred hHHHHHH--H-HHHHhc-CCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC------c--cHHHHHHHHHHHHcC
Q 035749 286 IVEALEL--F-RTLRIL-KCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI------A--DVVTYNIMIHALCAD 353 (405)
Q Consensus 286 ~~~a~~~--~-~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~ 353 (405)
...+... + ...... ............+.++...|+.+.|...++.+...... . ..........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3333222 1 111111 00111122234666777888888888888776542111 0 112222233345578
Q ss_pred CCHHHHHHHHHHHHhC
Q 035749 354 GKMDKAHDLFLDMEAK 369 (405)
Q Consensus 354 g~~~~A~~~~~~~~~~ 369 (405)
|++++|.+.+......
T Consensus 321 g~~~~A~~~L~~al~~ 336 (355)
T cd05804 321 GNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.2e-08 Score=82.53 Aligned_cols=381 Identities=14% Similarity=0.061 Sum_probs=222.5
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|++....++..+ +.+..++..=+-++.+.++|++|+.+.+.-... ..+...+..-..+..+.+..++|+
T Consensus 29 e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--------~~~~~~~fEKAYc~Yrlnk~Deal 99 (652)
T KOG2376|consen 29 EEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--------LVINSFFFEKAYCEYRLNKLDEAL 99 (652)
T ss_pred HHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--------hhcchhhHHHHHHHHHcccHHHHH
Confidence 46888888888776 566677787888899999999999666543211 111111123345566788899998
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------------------------ccHhhH
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ---------------------------PNVVTF 133 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~~~ 133 (405)
..++-.- +.+..+...-.+.+.+.|++++|.++|+.+.+.+.+ ....+|
T Consensus 100 k~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 100 KTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY 175 (652)
T ss_pred HHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence 8887221 224446666777888899999999999988654311 011233
Q ss_pred HHH---HHHHHcCCCHHHHHHHHHHHHHcC-------CCCC------HH-HHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 035749 134 SVI---MDELCKNGKMEEASQLLELMIQIG-------VRPN------AF-VYNTLMDGFCLTGRVNRAKELFVSMESMGC 196 (405)
Q Consensus 134 ~~l---~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~------~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 196 (405)
..+ .-.+...|++.+|+++++...+.+ -..+ .. +-..+.-.+-..|+..+|..++...+...
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~- 254 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN- 254 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-
Confidence 333 334567899999999999883321 0111 11 12234556778899999999999998875
Q ss_pred CCChhh----HHHHHHHHhhcCChH-HHHHHHH----------------------------------------HHHhC--
Q 035749 197 KHNVFS----YSILINGYCKNKEIE-GALSLYS----------------------------------------EMLSK-- 229 (405)
Q Consensus 197 ~~~~~~----~~~l~~~~~~~~~~~-~a~~~~~----------------------------------------~~~~~-- 229 (405)
++|... -|.++.+-....-++ .++..++ +....
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 333322 122221111000000 0000000 00000
Q ss_pred CCCCchhhHHHHHHHHH--ccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHH--------HHHhc
Q 035749 230 GIKPTVVTYNTLFIGLF--EIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFR--------TLRIL 299 (405)
Q Consensus 230 ~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~ 299 (405)
+..|.. .+..++..+. +...+.++..++...-+....-...+.-..+......|+++.|.+++. .+.+.
T Consensus 335 ~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 335 GMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 112222 2333333222 222466777777776665322224455666777888999999999998 44444
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC------CcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 035749 300 KCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG------VLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAP 373 (405)
Q Consensus 300 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 373 (405)
+. .+.+...+...+.+.++-+.|..++...... +...-...+..++..-.+.|+-++|..+++++.+. .++
T Consensus 414 ~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~ 490 (652)
T KOG2376|consen 414 KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPN 490 (652)
T ss_pred cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCc
Confidence 33 3345555666677777766666666554321 01111223334444445779999999999999986 466
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 374 DCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 374 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
|..+...++.+|++.. .+.|..+-+.
T Consensus 491 d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred hHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 8888888888887653 5555554433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.7e-09 Score=86.43 Aligned_cols=106 Identities=18% Similarity=0.120 Sum_probs=86.8
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
..+.+..|+++.|+..|.+++... |++...|..-..+|...|++++|++--.+-++.+ |.-+..|.....++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAAL 80 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHH
Confidence 456778999999999999999886 5688899999999999999999998877777764 44477899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL 140 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (405)
.-.|++++|+..|.+-++.... +...++.+..++
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAY 114 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhh
Confidence 9999999999999998876433 555666666655
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-08 Score=96.24 Aligned_cols=337 Identities=12% Similarity=0.006 Sum_probs=215.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------Ccc--HhhHHHHHH
Q 035749 67 IDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGV------QPN--VVTFSVIMD 138 (405)
Q Consensus 67 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~ 138 (405)
.......|+++.+..+++.+.......++.........+...|+++++..++......-. .+. ......+..
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 344556678887777776653221112233334455566788999999999988754311 111 122223344
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhcCC---CC--ChhhHHHHHHH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNA----FVYNTLMDGFCLTGRVNRAKELFVSMESMGC---KH--NVFSYSILING 209 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~ 209 (405)
.+...|++++|...++...+.....+. ...+.+...+...|++++|...+++...... .+ ...+...+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 566889999999999998764211121 2345566677889999999999988764311 11 12345566778
Q ss_pred HhhcCChHHHHHHHHHHHhC----CCC--C-chhhHHHHHHHHHccccHHHHHHHHHHHHHcC--CCc--cHHHHHHHHH
Q 035749 210 YCKNKEIEGALSLYSEMLSK----GIK--P-TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG--VAA--DTWAYRTFID 278 (405)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 278 (405)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88999999999998887652 211 1 12234455566777899999999998876431 111 2334444566
Q ss_pred HHhcCCChHHHHHHHHHHHhcCC--CccHH--H--HHHHHHHHHhcCCHHHHHHHHhhccCCCcCcc---HHHHHHHHHH
Q 035749 279 GLCKNGYIVEALELFRTLRILKC--ELDIR--S--YSCLIDGLCKSGRLKIAWELFHSLPRGVLIAD---VVTYNIMIHA 349 (405)
Q Consensus 279 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~--~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 349 (405)
.+...|+++.|...+..+..... ..... . ....+..+...|+.+.|...+........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 77889999999999988754311 11111 1 01122445568999999999877654221111 1124566778
Q ss_pred HHcCCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 350 LCADGKMDKAHDLFLDMEAK----GVAPD-CVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 350 ~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
+...|++++|...++++... |..++ ..+...+..++.+.|+.++|...+.+..+
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88999999999999988753 32222 24566677889999999999999988764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-08 Score=79.49 Aligned_cols=303 Identities=11% Similarity=0.071 Sum_probs=197.0
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
++.-..-+...+..+|++..|+.-|..+++.+ |.+-.++..-...|...|+...|+.-+.+.++. +||-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ 107 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMA 107 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHH
Confidence 44445567788888999999999999998765 344455666667788888888888888888875 565432
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc--Hh------------hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 035749 98 -YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN--VV------------TFSVIMDELCKNGKMEEASQLLELMIQIGVR 162 (405)
Q Consensus 98 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (405)
-..-...+.+.|.+++|..-|+..++.....+ .. .....+..+...|+...|+.....+++.. +
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 22234457788999999999999887643211 11 11223445566788888888888888774 6
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhh----H
Q 035749 163 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVT----Y 238 (405)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~ 238 (405)
.|...+..-..+|...|++..|+.-++...+.. ..+..++.-+-..+...|+.+.++...++.++. .||... |
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~Y 263 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFY 263 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHH
Confidence 677788888888888888888888777776654 345556666677778888888888888887765 344322 1
Q ss_pred HHH---H------HHHHccccHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHH
Q 035749 239 NTL---F------IGLFEIHQVERAFKLFDEMQRHGVAA---DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIR 306 (405)
Q Consensus 239 ~~l---~------~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 306 (405)
..+ . ....+.++|.+++...+...+..... ....+..+-.++...+++.+|++.-.+++... +.|..
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~ 342 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHH
Confidence 111 1 11233445555555555555442110 11223344455555666777776666666553 34466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccCC
Q 035749 307 SYSCLIDGLCKSGRLKIAWELFHSLPRG 334 (405)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (405)
++..-+.+|.-...++.|+.-|+...+.
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6666666777666777777777666654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-08 Score=83.57 Aligned_cols=371 Identities=15% Similarity=0.063 Sum_probs=216.5
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
+.|+..|-+..... |+|-..|..-..+|...|++++|++=-.+.++.. |.-+..|.....++.-.|++++|+
T Consensus 19 ~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-------p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-------PDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred HHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-------CchhhHHHHhHHHHHhcccHHHHH
Confidence 35788888888876 5577889999999999999999999888888765 445778999999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHH---HHHHHHHHC---CCCccHhhHHHHHHHHHc----------CC
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAK---RLFIEMMDQ---GVQPNVVTFSVIMDELCK----------NG 144 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~---~~~~~~~~~~~l~~~~~~----------~~ 144 (405)
..|.+-++.. +.+...+..+..++.......+.. .++..+... ........|..++..+-+ ..
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 9999988764 556666777766652110000000 001110000 000001111122111110 00
Q ss_pred CHHHHHHHHHHH-----HHc-------CCCC----------------------CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 035749 145 KMEEASQLLELM-----IQI-------GVRP----------------------NAFVYNTLMDGFCLTGRVNRAKELFVS 190 (405)
Q Consensus 145 ~~~~a~~~~~~~-----~~~-------~~~~----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (405)
.+..+...+... ... +..| -..-...+.+...+..+++.+.+.+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 011111111000 000 0000 011234456666666667777777766
Q ss_pred HHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh-------hHHHHHHHHHccccHHHHHHHHHHHHH
Q 035749 191 MESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV-------TYNTLFIGLFEIHQVERAFKLFDEMQR 263 (405)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (405)
..... .+..-++....+|...|.+......-.+..+.|-. ... .+..+..++.+.++++.+...|.+.+.
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 66553 34444455555666666665555555554443311 111 112233344455566666666665543
Q ss_pred cCCCccHH-------------------------HHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 035749 264 HGVAADTW-------------------------AYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKS 318 (405)
Q Consensus 264 ~~~~~~~~-------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (405)
....|+.. -...-...+.+.|++..|...|.+++... |.|...|...+-+|.+.
T Consensus 327 e~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 327 EHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKL 405 (539)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHH
Confidence 32222211 11122445667788999999998888876 77888888888889999
Q ss_pred CCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 035749 319 GRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIR 387 (405)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (405)
|.+..|+.-.+...+.. ++....|..-+.++....+|+.|.+.|++.++. .|+..-+...+.-|..
T Consensus 406 ~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred hhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 99888888877777652 234556666666777778889999999888885 4555444444444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-12 Score=72.96 Aligned_cols=50 Identities=40% Similarity=0.790 Sum_probs=44.6
Q ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 035749 338 ADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIR 387 (405)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (405)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999988864
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-10 Score=92.27 Aligned_cols=251 Identities=12% Similarity=0.039 Sum_probs=145.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (405)
+-+.-.|++..++.-.+ ......+.+......+.+++...|+++.++ ..+.... +|.......+...+...++.+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455677777775555 222222223444556677777777766543 3333333 556566555555444434455
Q ss_pred HHHHHHHHHHhcCCC-CChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHH
Q 035749 183 RAKELFVSMESMGCK-HNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEM 261 (405)
Q Consensus 183 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (405)
.+..-++........ .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555544443333222 22233333345566678888887777542 24555566677778888888888888887
Q ss_pred HHcCCCccHHHHHHHHHHHhc----CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC
Q 035749 262 QRHGVAADTWAYRTFIDGLCK----NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI 337 (405)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (405)
.+.+ +..+...+..++.. ...+.+|..+|+++... .++++.+.+.++.++...|++++|.+++.+..+...
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~- 232 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP- 232 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-
Confidence 7642 22344444444432 23577888888887654 356777778888888888888888888887766533
Q ss_pred ccHHHHHHHHHHHHcCCCH-HHHHHHHHHHHhC
Q 035749 338 ADVVTYNIMIHALCADGKM-DKAHDLFLDMEAK 369 (405)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 369 (405)
-++.+...++.+....|+. +.+.+.+.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3566777777777777776 5566777777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.5e-12 Score=71.81 Aligned_cols=49 Identities=45% Similarity=0.948 Sum_probs=25.0
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH
Q 035749 93 PDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141 (405)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (405)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3445555555555555555555555555555555555555555555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-09 Score=90.36 Aligned_cols=226 Identities=14% Similarity=0.111 Sum_probs=165.0
Q ss_pred HHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 035749 25 LINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRG 104 (405)
Q Consensus 25 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (405)
....+.++|++.+|.-.|+.+++.+ |.+...|..|.......++-..|+..+++..+.. |.+......|.-.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVS 362 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVS 362 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 3445678999999999999998886 6678899999999999999999999999998875 5578888888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCc--------cHhhHHHHHHHHHcCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHH
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQP--------NVVTFSVIMDELCKNGKMEEASQLLELM-IQIGVRPNAFVYNTLMDGF 175 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 175 (405)
|...|.-..|.++++..+...++- +...-.. ........+....++|-.+ .+.+..+|+.+...|.-.|
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 999999999999998887653210 0000000 0111112233444444443 4444457777888888888
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCch-hhHHHHHHHHHccccHHHH
Q 035749 176 CLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTV-VTYNTLFIGLFEIHQVERA 254 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a 254 (405)
.-.|++++|..+|+.+.... |.|...||.|.-.+....+..+|+..|.+.++. .|.. .....|..+|...|.+++|
T Consensus 441 ~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred hcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHH
Confidence 88888888888888888775 567778888888888888888888888888875 4443 3455677788888888888
Q ss_pred HHHHHHHHH
Q 035749 255 FKLFDEMQR 263 (405)
Q Consensus 255 ~~~~~~~~~ 263 (405)
...|-.++.
T Consensus 518 ~~hlL~AL~ 526 (579)
T KOG1125|consen 518 VKHLLEALS 526 (579)
T ss_pred HHHHHHHHH
Confidence 888776553
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-08 Score=77.52 Aligned_cols=312 Identities=15% Similarity=0.126 Sum_probs=203.5
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHH-HHHHHHHhcCChHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYT-TIIDGLCKEGFVDKAK 80 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~ 80 (405)
+|++++..-.+.. +.+......+..+|.+..++..|-..++++-... |...-|. .-.+.+.+.+.+..|+
T Consensus 28 DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--------P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 28 DAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--------PELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHHHHhcccHHHH
Confidence 4666666665553 3367778899999999999999999999998764 4333333 3456777889999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIR--GFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ 158 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (405)
.+...|.+. ++...-..-+. .....+++..+..+.++....| +..+.+...-...+.|+++.|.+-|+...+
T Consensus 99 rV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 99 RVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred HHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHh
Confidence 999887653 22222111222 2335678888888888775432 445555555566789999999999999888
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC-------------Ch---------------hhHHHHHHHH
Q 035749 159 IGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH-------------NV---------------FSYSILINGY 210 (405)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~~l~~~~ 210 (405)
-+.-.....|+ +.-+..+.++++.|++...++.+.|++. |+ ..+|.-...+
T Consensus 173 vsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIe 251 (459)
T KOG4340|consen 173 VSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIE 251 (459)
T ss_pred hcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhh
Confidence 75344445555 4446678899999999999988765422 11 1233333445
Q ss_pred hhcCChHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHH
Q 035749 211 CKNKEIEGALSLYSEMLSK-GIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEA 289 (405)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 289 (405)
.+.++++.|.+.+..|..+ ....|+.|...+.-.- ..+++.....-+.-+...+ |....++..++-.|+++.-++.|
T Consensus 252 yq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 252 YQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred hhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHH
Confidence 6788999998888887543 2234666666554322 2344555555566666654 45677899999999999999999
Q ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHH-hcCCHHHHHHHHhhcc
Q 035749 290 LELFRTLRILKCE-LDIRSYSCLIDGLC-KSGRLKIAWELFHSLP 332 (405)
Q Consensus 290 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 332 (405)
-+++.+-...... .+...|+ ++.++. ..-.+++|.+-+..+.
T Consensus 330 ADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 330 ADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 8887653322111 2233333 344443 3345777776665543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-09 Score=88.10 Aligned_cols=252 Identities=14% Similarity=0.109 Sum_probs=137.4
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
++-+.-.|++..++.-.+ ..... ..........+.+++...|+++.++ .++.... +|.......+...+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~------~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~ 76 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFS------PENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYL 76 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTST------CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCC------chhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHH
Confidence 455667788888876665 22222 1233455666777777788766543 3443333 55666665565555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQ-PNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
...++-+.++.-+++....... .+..........+...|++++|++++... .+.......+.++.+.++++.|
T Consensus 77 ~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA 150 (290)
T PF04733_consen 77 SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLA 150 (290)
T ss_dssp CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHH
T ss_pred hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHH
Confidence 4434455555544444333222 22233333344556677777777766532 2445555666777777777777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHH----HhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHH
Q 035749 185 KELFVSMESMGCKHNVFSYSILING----YCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDE 260 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (405)
.+.++.|.+.+ .|. +...+..+ +.....+.+|..+|+++... ..+++.+.+.+..++...|++++|..++.+
T Consensus 151 ~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 151 EKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 77777776652 232 22222222 22234567777777776554 345666666666677777777777777777
Q ss_pred HHHcCCCccHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhc
Q 035749 261 MQRHGVAADTWAYRTFIDGLCKNGYI-VEALELFRTLRIL 299 (405)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 299 (405)
....+ +-++.++..++.+....|+. +.+.+.+.++...
T Consensus 227 al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 227 ALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 66544 44555666666665556655 5555666665544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=91.84 Aligned_cols=254 Identities=16% Similarity=0.062 Sum_probs=193.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh
Q 035749 137 MDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (405)
..-+.+.|++.+|.-.|+..++.+ |-+...|..|.......++-..|+..++++.+.. +.+..+...|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 344567899999999999998886 6678899999999999999999999999999886 66788888899999999999
Q ss_pred HHHHHHHHHHHhCCCCC--------chhhHHHHHHHHHccccHHHHHHHHHHHH-HcCCCccHHHHHHHHHHHhcCCChH
Q 035749 217 EGALSLYSEMLSKGIKP--------TVVTYNTLFIGLFEIHQVERAFKLFDEMQ-RHGVAADTWAYRTFIDGLCKNGYIV 287 (405)
Q Consensus 217 ~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~ 287 (405)
..|++.+++.+...++- +...-.. ..+..........++|-++. ..+..+|+.+...|.-.|.-.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 99999999987653110 0000000 12222233445555555554 4444478888999999999999999
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCcc-HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 288 EALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIAD-VVTYNIMIHALCADGKMDKAHDLFLDM 366 (405)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 366 (405)
+|.+.|+.++... |-|..+|+.|+..+....+.++|+..|+++.+. .|. +.+...|..+|+..|.+.+|.+.|-.+
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999876 678899999999999999999999999999884 554 566777888999999999999998877
Q ss_pred HhC---------CCCCCHHHHHHHHHHHHccCchhHHHHH
Q 035749 367 EAK---------GVAPDCVAFNTLMLGCIRNNETSKVVEL 397 (405)
Q Consensus 367 ~~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 397 (405)
+.. +..++..+|..|=.++...++.+-+.+.
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 642 1122345777777777777777644443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-07 Score=73.78 Aligned_cols=305 Identities=12% Similarity=0.035 Sum_probs=208.6
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhh-HHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVT-FSV 135 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 135 (405)
+.+..-...+...+...|++..|+.-|....+.+ |.+-.++-.-...|...|+...|+.-+...++. +||-.. -..
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 4456666778888888999999999999988753 223334444456788889999999888888875 555332 223
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCC--HH------------HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChh
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPN--AF------------VYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVF 201 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 201 (405)
-...+.+.|.+++|..-|+.+++...... .. .....+..+...|+...|+.....+.+.. +.+..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 34567899999999999999988742111 11 11223445667788888888888888775 66777
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHH------
Q 035749 202 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRT------ 275 (405)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------ 275 (405)
.+..-..+|...|++..|+.=++...+.. .-+..++..+-..+...|+.+.++...++.++. .||......
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence 88888888888888888888777766543 224455556677788888888888888888775 355432211
Q ss_pred -HH------HHHhcCCChHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHH
Q 035749 276 -FI------DGLCKNGYIVEALELFRTLRILKCE---LDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNI 345 (405)
Q Consensus 276 -l~------~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 345 (405)
+. ......++|.++++-.+...+.... .....+..+-.++...|++.+|++...++.+. .+.|+.++.-
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~d 346 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc-CchHHHHHHH
Confidence 11 1233456677777776666654321 11223445556677778888888888877764 1224777777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 346 MIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
-..+|.-...++.|+.-|+.+.+.
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 778888888888888888888875
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.4e-07 Score=75.85 Aligned_cols=375 Identities=10% Similarity=0.089 Sum_probs=222.8
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
|-|..+|..||+-+..+ .++++.+.++++... +|..+..|..-|......++++....+|.+.... ..+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnl 86 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNL 86 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhH
Confidence 67889999999988666 999999999999876 4677889999999999999999999999998765 3456
Q ss_pred HHHHHHHHHHHhc-CCHHH----HHHHHHHHHH-CCCCc-cHhhHHHHHHH---------HHcCCCHHHHHHHHHHHHHc
Q 035749 96 VTYNSVIRGFCYA-NDSNE----AKRLFIEMMD-QGVQP-NVVTFSVIMDE---------LCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 96 ~~~~~l~~~~~~~-~~~~~----a~~~~~~~~~-~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~ 159 (405)
..|...+..-.+. |+... ..+.|+-.+. .|+.+ +...|+..+.. +....+++...+++++++..
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 7777666643332 22222 2223333222 23222 22233333322 33445677777777776654
Q ss_pred CCCCCHHHHHH------HHHH-------HHccCCHHHHHHHHHHHHhc--CC-------CCC--------hhhHHHHHH-
Q 035749 160 GVRPNAFVYNT------LMDG-------FCLTGRVNRAKELFVSMESM--GC-------KHN--------VFSYSILIN- 208 (405)
Q Consensus 160 ~~~~~~~~~~~------l~~~-------~~~~~~~~~a~~~~~~~~~~--~~-------~~~--------~~~~~~l~~- 208 (405)
.+..-...|+- -++. -.+...+..|.++++++... |. +|. ...|..+|.
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 22111111111 1110 11223355555555544321 11 000 000111111
Q ss_pred ------------------------------------------------HHhhcCC-------hHHHHHHHHHHHhCCCCC
Q 035749 209 ------------------------------------------------GYCKNKE-------IEGALSLYSEMLSKGIKP 233 (405)
Q Consensus 209 ------------------------------------------------~~~~~~~-------~~~a~~~~~~~~~~~~~~ 233 (405)
.+...|+ -+++..+++..+..-...
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1111122 233444444433321111
Q ss_pred chhhHHHHHHHHH---ccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCc-cHHHHH
Q 035749 234 TVVTYNTLFIGLF---EIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCEL-DIRSYS 309 (405)
Q Consensus 234 ~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 309 (405)
+..+|..+...-- ..+..+.....+.+++..-...-.-++...+....+..-+..|+.+|.++.+.+..+ ++.+..
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 2222222221111 111255556666666543222223466777777778888999999999998887666 666677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHc
Q 035749 310 CLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD--CVAFNTLMLGCIR 387 (405)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 387 (405)
+++..|+ .++..-|.++|+-=.+. ...++..-...+..+...++-..|..+|++.+..++.|+ ..+|..++.--..
T Consensus 407 A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 407 ALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 7777655 67889999999875543 222444445667777888999999999999998866654 4689999988889
Q ss_pred cCchhHHHHHHHHhh
Q 035749 388 NNETSKVVELLHRMD 402 (405)
Q Consensus 388 ~g~~~~a~~~~~~~~ 402 (405)
-|+...+.++-+++.
T Consensus 485 vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 485 VGDLNSILKLEKRRF 499 (656)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999998887764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-08 Score=87.60 Aligned_cols=222 Identities=17% Similarity=0.103 Sum_probs=166.5
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHH
Q 035749 161 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNT 240 (405)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (405)
.+|-...-..+...+...|-...|..+++++.. |..++.+|...|+..+|..+..+-.++ +|++..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 344445556677788888888888888887653 455677888888888888888887774 678888888
Q ss_pred HHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 035749 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR 320 (405)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (405)
++.......-+++|.++.+..... .-..+.....+.++++++.+.|+...+.. +....+|..+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 887777777778888877755432 11222223344688888888888877765 6677788888888888888
Q ss_pred HHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 321 LKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
++.|.+.|.....-. +.+...||++-.+|.+.|+-.+|...++++.+.+ ..+...|...+....+.|.+++|.+.+++
T Consensus 535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 888888888776642 2256788888888888888888888888888876 44666777777778888888888888888
Q ss_pred hhh
Q 035749 401 MDE 403 (405)
Q Consensus 401 ~~~ 403 (405)
+.+
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 754
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.2e-07 Score=75.47 Aligned_cols=215 Identities=13% Similarity=0.039 Sum_probs=145.1
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEG-FVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
++..+-..+...++.++|+.+.+++++.+ |.+..+|+....++...| ++++++..++++.+.+ +-+..+|+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~ 110 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWH 110 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhH
Confidence 34555566677788899999999998875 455667777777777777 5789999999888775 44666777
Q ss_pred HHHHHHHhcCCH--HHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 100 SVIRGFCYANDS--NEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 100 ~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
.....+.+.|.. ++++..++++++...+ +..+|.....++...|+++++++.++++++.+ +.+...|+.....+.+
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHh
Confidence 665555566653 6778888888877554 78888888888888888999999999988876 4566666665555444
Q ss_pred c---CC----HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc----CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 035749 178 T---GR----VNRAKELFVSMESMGCKHNVFSYSILINGYCKN----KEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLF 246 (405)
Q Consensus 178 ~---~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 246 (405)
. |. .++.+.+..+++... |.+..+|+-+...+... +...+|.+.+.+....+ +.+......++..|.
T Consensus 189 ~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 189 SPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred ccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 3 22 245666665666554 55667777766666652 23345666666655532 224445555555554
Q ss_pred c
Q 035749 247 E 247 (405)
Q Consensus 247 ~ 247 (405)
.
T Consensus 267 ~ 267 (320)
T PLN02789 267 E 267 (320)
T ss_pred h
Confidence 3
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.7e-07 Score=87.04 Aligned_cols=306 Identities=11% Similarity=-0.008 Sum_probs=199.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC------CCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH----h
Q 035749 64 TTIIDGLCKEGFVDKAKELLLQMKDKNI------NPD--VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV----V 131 (405)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 131 (405)
......+...|+++++..++......-- .+. ......+...+...|++++|...+++....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3444555678999999999987754310 111 122233445566889999999999998763111121 2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----CCCC---C
Q 035749 132 TFSVIMDELCKNGKMEEASQLLELMIQIGV---RP--NAFVYNTLMDGFCLTGRVNRAKELFVSMESM----GCKH---N 199 (405)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~ 199 (405)
....+...+...|++++|...+++...... .+ .......+...+...|++++|...+++.... +... .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 345566677889999999999988765321 11 1234556677888999999999998887543 2111 1
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHhC--CCCC--chhhHHHHHHHHHccccHHHHHHHHHHHHHcC--CCccHHH-
Q 035749 200 VFSYSILINGYCKNKEIEGALSLYSEMLSK--GIKP--TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG--VAADTWA- 272 (405)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~- 272 (405)
...+..+...+...|++++|...+.+.... ...+ ....+..+...+...|+++.|...+....... .......
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 233445666777889999999999887653 1112 23344455667788999999999998875421 1111111
Q ss_pred ---HHHHHHHHhcCCChHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHhhccCC----CcCc-cHH
Q 035749 273 ---YRTFIDGLCKNGYIVEALELFRTLRILKCELD---IRSYSCLIDGLCKSGRLKIAWELFHSLPRG----VLIA-DVV 341 (405)
Q Consensus 273 ---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 341 (405)
....+..+...|+.+.|...+........... ......+..++...|++++|...+++.... +..+ ...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 01122444567899999999877654221111 112456777889999999999999887542 2221 234
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
+...+..++...|+.++|...+.++.+.
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667778889999999999999999876
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-08 Score=86.05 Aligned_cols=221 Identities=11% Similarity=0.072 Sum_probs=182.6
Q ss_pred ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 035749 128 PNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILI 207 (405)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 207 (405)
|-...-..+...+.+.|-...|..+++++. .|...+.+|...|+..+|..+..+..+. +|++..|..++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333344567778888999999999998764 4667888999999999999999988874 78999999999
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChH
Q 035749 208 NGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIV 287 (405)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 287 (405)
.......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....++.....+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 8887777788888888775442 22223333445789999999999888765 567788888888999999999
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 288 EALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
.|.+.|....... |.+...|+.+..+|.+.++-.+|...+++..+.+ .-+...|.+.+....+.|.+++|++.+.++.
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999999998765 6677899999999999999999999999998876 4477788889999999999999999999987
Q ss_pred hC
Q 035749 368 AK 369 (405)
Q Consensus 368 ~~ 369 (405)
+.
T Consensus 615 ~~ 616 (777)
T KOG1128|consen 615 DL 616 (777)
T ss_pred Hh
Confidence 54
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.8e-07 Score=72.95 Aligned_cols=214 Identities=9% Similarity=0.014 Sum_probs=146.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH
Q 035749 63 YTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN-DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141 (405)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (405)
+..+-..+...++.++|+.+..++++.+ |-+..+|+....++...| ++++++..++++.+..++ +..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 3334444555678889999999998874 445566766666666677 578999999999887554 6667776665666
Q ss_pred cCCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc---CCh
Q 035749 142 KNGKM--EEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN---KEI 216 (405)
Q Consensus 142 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 216 (405)
+.|.. +++..+++++++.+ +-+..+|.....++...|+++++++.+.++.+.+ +.+..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccc
Confidence 66653 67788888888776 6678888888888888899999999999998876 55666777666555443 222
Q ss_pred ----HHHHHHHHHHHhCCCCCchhhHHHHHHHHHc----cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 035749 217 ----EGALSLYSEMLSKGIKPTVVTYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK 282 (405)
Q Consensus 217 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (405)
+..+....+++... +-+...|+.+...+.. .+...+|...+.+....+ +.+...+..++..|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 45666666666653 3455667666666655 233455767776666543 4456667777777764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-07 Score=86.11 Aligned_cols=202 Identities=14% Similarity=0.098 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP-----DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFS 134 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (405)
...|...+....+.++.+.|.++.+++... +.+ -...|.+++..-..-|.-+...++|+++.+.- . ....|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHHH
Confidence 334444444444445555555554444332 111 01233333333333344444445555544431 1 223344
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHhh
Q 035749 135 VIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH--NVFSYSILINGYCK 212 (405)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 212 (405)
.|...|.+.+.+++|.++++.|.+. +.....+|..++..+.+.++-++|..++.++.+.- |. ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhh
Confidence 4444555555555555555555443 12344445555555555555555555555444331 11 12233333444444
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCC
Q 035749 213 NKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVA 267 (405)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 267 (405)
.|+.+++..+|+..+... +--...|+..+..-.++|+.+.+..+|+++...+++
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 555555555555544431 112334444445555555555555555555544433
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.3e-07 Score=81.86 Aligned_cols=130 Identities=12% Similarity=0.046 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCChHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI-NPDVVTY 98 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 98 (405)
..|..|...|+...+...|.+-|+++.+.+ +.+..........|++..+++.|..+.-..-+... ..-...|
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-------atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW 565 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-------ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENW 565 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhh
Confidence 357777777777667777777777777665 34566666666677776666666666332222100 0001112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMI 157 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (405)
....-.|.+.++...|...|+...+..+. |...|..+..+|...|.+..|.++|.++.
T Consensus 566 ~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 566 VQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred hhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 22333344444444444444444443222 44444444444444444444444444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-07 Score=87.15 Aligned_cols=203 Identities=12% Similarity=0.040 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCC---CChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHH
Q 035749 166 FVYNTLMDGFCLTGRVNRAKELFVSMESM-GCK---HNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241 (405)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (405)
..|...|......++.++|.++.+++... ++. .-...|.++++.-...|.-+...++|+++.+. ......|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHH
Confidence 33444444444444444444444444321 000 01123333333333344444444444444442 1112234444
Q ss_pred HHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhcC
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCEL--DIRSYSCLIDGLCKSG 319 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~ 319 (405)
...|.+.+..++|.++++.|.+.- ......|...+..+.++++-+.|..++.++.+.- |- ........++.-.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhcC
Confidence 444444444444444444444431 2333444444444444444444444444444321 11 2223333344444445
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAP 373 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 373 (405)
+.+.+..+|+...... +-....|+.++..-.++|+.+.+..+|+++...++.|
T Consensus 1615 DaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 5555555554444331 1133445555555555555555555555555444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.5e-08 Score=77.74 Aligned_cols=188 Identities=11% Similarity=-0.068 Sum_probs=123.7
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChH-
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVV- 96 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 96 (405)
....+..++..+...|++++|...|+++....+. .+....++..+..++...|++++|...++++.+.. |.+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~ 106 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF----SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDA 106 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCch
Confidence 3456777888888899999999999988876521 01123467788888888899999999999887763 22222
Q ss_pred --HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH
Q 035749 97 --TYNSVIRGFCYA--------NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAF 166 (405)
Q Consensus 97 --~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (405)
++..+..++... |+.++|.+.|+.+....+. +...+..+..... ... .. ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~ 167 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AG 167 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HH
Confidence 455555555544 6778888888888765322 2222221111100 000 00 01
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMESMGC--KHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
....+...+...|++.+|...++.+..... +.....+..+..++.+.|++++|...++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112456678889999999999999877631 223567888899999999999999988887765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.7e-07 Score=81.12 Aligned_cols=182 Identities=10% Similarity=0.055 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHH
Q 035749 35 TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEA 114 (405)
Q Consensus 35 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 114 (405)
...|+..|-+.++.+ +.-...|..|...|....+..+|...|+...+.. +.+..........|++..+++.|
T Consensus 474 ~~~al~ali~alrld-------~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-------VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred HHHHHHHHHHHHhcc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHH
Confidence 566666666666654 2234566677777776666777777777766653 34566666677777777777777
Q ss_pred HHHHHHHHHCC-CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 035749 115 KRLFIEMMDQG-VQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 115 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (405)
..+.-..-+.. ...-...|....-.|.+.++...+...|+...+.. |.|...|..++.+|..+|++..|.++|.++..
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 76633222211 00112223334445666677777777777666654 55666677777777777777777777766665
Q ss_pred cCCCCChhhHHHHHHHHhhcCChHHHHHHHHHH
Q 035749 194 MGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (405)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (405)
.. |.+...---.....+..|.+.+|...+..+
T Consensus 625 Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 625 LR-PLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred cC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 42 112111111222334445555555555444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.7e-06 Score=75.64 Aligned_cols=297 Identities=14% Similarity=0.096 Sum_probs=173.0
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHH
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSV 135 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (405)
.++......+.++...+-+.+-+++++++.-.+. .-+...-+.|+....+. +..+..+..+++-..+. ..
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-------~~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-------PD 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-------hh
Confidence 4566677778888888888999999988864321 12233344455444443 34555666666544321 12
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (405)
+...+...+-+++|..+|++. ..+....+.++. ..+..+.|.++-++.. .+..|+.+..+-.+.|.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 445556667778888887764 334444455443 3445566655555432 34567777777777777
Q ss_pred hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHH
Q 035749 216 IEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRT 295 (405)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 295 (405)
..+|++-|-+. -|+..|..++....+.|.+++...++....+....|.. -..++-+|++.++..+-++++.
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-
Confidence 77777665432 25556777777777777777777777666655433332 3456666777776665554432
Q ss_pred HHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH--------
Q 035749 296 LRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDME-------- 367 (405)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------- 367 (405)
.|+......++.-|...|.++.|.-+|..+ ..|..|...+...|+++.|...-+++-
T Consensus 1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred ------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 455555666666666666666666555432 234555555555555555554433322
Q ss_pred ----------------hCCCCCCHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 368 ----------------AKGVAPDCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 368 ----------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
..++-....-+..++..|...|-+++...+++.
T Consensus 1256 cfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1256 CFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 111222334455566666666777776666654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-07 Score=71.45 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=133.3
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
|.+..+ ..+-..+.-.|+-+....+........ +.+.......+...++.|++..|...+.+..... ++|..+|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 445566 677777788888888888877765432 4466667778888889999999999999988763 5588899999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh
Q 035749 137 MDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (405)
.-+|.+.|+++.|..-|.+..+.. +-+....+.+.-.+.-.|+.+.|..++......+ +.+..+-..+.......|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCCh
Confidence 999999999999999999988874 5567778888888899999999999998888764 44677777888888889999
Q ss_pred HHHHHHHHHHHh
Q 035749 217 EGALSLYSEMLS 228 (405)
Q Consensus 217 ~~a~~~~~~~~~ 228 (405)
+.|.++...-..
T Consensus 219 ~~A~~i~~~e~~ 230 (257)
T COG5010 219 REAEDIAVQELL 230 (257)
T ss_pred HHHHhhcccccc
Confidence 999888776554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-07 Score=74.71 Aligned_cols=188 Identities=8% Similarity=-0.050 Sum_probs=132.2
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH--h
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV---VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV--V 131 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 131 (405)
......+..++..+...|++++|...|+++.... |.+. .++..+..++...|++++|...++++.+..+.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3457788889999999999999999999998763 2232 46778888999999999999999999876432111 2
Q ss_pred hHHHHHHHHHcC--------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhH
Q 035749 132 TFSVIMDELCKN--------GKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSY 203 (405)
Q Consensus 132 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (405)
++..+..++... |++++|.+.++.+.+.. +.+...+..+..... .. ... ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~------~~~--------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LR------NRL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HH------HHH--------HHHH
Confidence 455555556544 67888999998888763 222223222211110 00 000 0112
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCC--CCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 204 SILINGYCKNKEIEGALSLYSEMLSKGI--KPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
..+...+.+.|++++|+..+........ +.....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2566778999999999999999987631 223467889999999999999999999888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-05 Score=72.93 Aligned_cols=349 Identities=13% Similarity=0.121 Sum_probs=183.3
Q ss_pred HHHHHHhhcCC--CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHH
Q 035749 5 ALFTKLKAFGC--EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKEL 82 (405)
Q Consensus 5 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 82 (405)
++.+...+-++ ..|+......+.++...+-+.+-+++++++.-.+.. +..+...-+.|+....+. +..+..+.
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~----Fse~~nLQnLLiLtAika-d~trVm~Y 1042 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV----FSENRNLQNLLILTAIKA-DRTRVMEY 1042 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc----cccchhhhhhHHHHHhhc-ChHHHHHH
Confidence 34444444433 235566777888999999999999999998765432 233444555565555544 45566666
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 035749 83 LLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVR 162 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 162 (405)
.+++-.-. .|+ +...+...+-+++|..+|++.- .+..+...++.- -+..+.|.+.-++.-
T Consensus 1043 I~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n----- 1102 (1666)
T KOG0985|consen 1043 INRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN----- 1102 (1666)
T ss_pred HHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC-----
Confidence 66665442 122 2333445556677777766542 233333433332 234444444433321
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHH
Q 035749 163 PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLF 242 (405)
Q Consensus 163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (405)
.+.+|..+..+-.+.|...+|++-|-+. .|+..|.-++....+.|.+++-.+.+....+..-.|... ..++
T Consensus 1103 -~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 -EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELI 1173 (1666)
T ss_pred -ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHH
Confidence 2345555555555555555555544331 244455555555555566655555555544443333322 2444
Q ss_pred HHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc--------------------CCC
Q 035749 243 IGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL--------------------KCE 302 (405)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~ 302 (405)
-+|++.++..+..+.+. .|+......+.+-|...+.++.|.-+|...... ...
T Consensus 1174 ~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 55555555444333321 234444444444444444444443333322100 002
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035749 303 LDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLM 382 (405)
Q Consensus 303 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 382 (405)
.+..+|-.+..+|...+.+.-|. +-..++.....-...++..|-..|-+++-+.+++..+.. -+.....|+.|.
T Consensus 1247 ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfTELa 1320 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL-ERAHMGMFTELA 1320 (1666)
T ss_pred cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-hHHHHHHHHHHH
Confidence 24455666666666555544332 222223345566778888889999999999888877643 123445667776
Q ss_pred HHHHccCchhHHHHHHHHh
Q 035749 383 LGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 383 ~~~~~~g~~~~a~~~~~~~ 401 (405)
..|.+ =++++..+.++-+
T Consensus 1321 iLYsk-ykp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1321 ILYSK-YKPEKMMEHLKLF 1338 (1666)
T ss_pred HHHHh-cCHHHHHHHHHHH
Confidence 66654 3455555555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-08 Score=71.42 Aligned_cols=95 Identities=6% Similarity=-0.135 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
+..+...+...|++++|...|+.++... |.+...|..+..++...|++++|...|++....+ +.+...+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~l 98 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-------PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 3344555555566666666666555543 3455555555555556666666666666555543 4455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
..++...|++++|...|+..++.
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555556666666666555554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-06 Score=77.47 Aligned_cols=334 Identities=18% Similarity=0.107 Sum_probs=191.8
Q ss_pred ChhHHHHHHH--HHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-----
Q 035749 18 NVITYSTLIN--GLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKN----- 90 (405)
Q Consensus 18 ~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 90 (405)
|..|-..++. .|...|+.+.|.+-.+.+. +..+|..+...|.+..+.+-|.-.+-.|....
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAl 792 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARAL 792 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHH
Confidence 4555555553 4677899999887777653 35689999999998888877765555443210
Q ss_pred ---C-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH
Q 035749 91 ---I-NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAF 166 (405)
Q Consensus 91 ---~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (405)
. .++ ..-..........|.+++|+.+|.+..+. ..+=..|...|.|++|.++-+.--+.. -..
T Consensus 793 R~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~ 859 (1416)
T KOG3617|consen 793 RRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRN 859 (1416)
T ss_pred HHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhh
Confidence 0 121 22233344456789999999999987653 344556778899999998876433222 234
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhc----------C---------CCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMESM----------G---------CKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (405)
+|.....-+...++.+.|++.|++.... . ...+...|.-....+-..|+.+.|+.+|....
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 6666677777788888888888754211 0 01233444445555555666666666665544
Q ss_pred hCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC------
Q 035749 228 SKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC------ 301 (405)
Q Consensus 228 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------ 301 (405)
. |-.+++..+-.|+.++|..+-++ ..|......+.+.|...|++.+|..+|.++.....
T Consensus 940 D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcK 1004 (1416)
T KOG3617|consen 940 D---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCK 1004 (1416)
T ss_pred h---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 22344445556666666655432 23556666777888888888888887776542110
Q ss_pred CccHHHHHHHHHHHHhcC--CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHH--------HHhCC-
Q 035749 302 ELDIRSYSCLIDGLCKSG--RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLD--------MEAKG- 370 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~~~~~- 370 (405)
..+ .-..|...+...| +.-.|.++|++.--. +...+..|-+.|.+.+|+++--+ ++..+
T Consensus 1005 End--~~d~L~nlal~s~~~d~v~aArYyEe~g~~--------~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DL 1074 (1416)
T KOG3617|consen 1005 END--MKDRLANLALMSGGSDLVSAARYYEELGGY--------AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDL 1074 (1416)
T ss_pred hcC--HHHHHHHHHhhcCchhHHHHHHHHHHcchh--------hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhc
Confidence 000 0011111122121 233344444443211 12223345566666666554221 11222
Q ss_pred -CCCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 371 -VAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 371 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
...|+...+.-...++...++++|..++-..
T Consensus 1075 d~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1075 DAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2346666666667777777888887776543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-06 Score=75.54 Aligned_cols=164 Identities=13% Similarity=0.023 Sum_probs=99.7
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccc--ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVV--CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
+...|..+.+.|.+.++.+-|.--+--|....+..... ...+...-..........|-+++|+.+|.+-++.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 44579999999998888887654443332211000000 0001122233344456778899999999887653
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHH----------HcC-----
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMI----------QIG----- 160 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~----- 160 (405)
..|=..|...|.|++|.++-+.--+ +. =..||.....-+-..++.+.|++.|++.. ...
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 3344456678899999887664322 11 23456666666667778888887776531 111
Q ss_pred ----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 035749 161 ----VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 161 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (405)
-..|...|.....-....|+.+.|+.+|....+
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 123556677777777788888888888887664
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-07 Score=71.42 Aligned_cols=125 Identities=11% Similarity=0.090 Sum_probs=89.7
Q ss_pred cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHH-HHhcCC--HHHH
Q 035749 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDG-LCKSGR--LKIA 324 (405)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a 324 (405)
.++.+++...+....+.+ +.+...+..+...|...|++++|...++++.... +.+...+..++.+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 556667777777766664 6677777777788888888888888888877765 5567777777775 356666 4788
Q ss_pred HHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 035749 325 WELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCV 376 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 376 (405)
.+++++..+.... +..++..+...+...|++++|+..|+++.+. .+|+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVN 179 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCcc
Confidence 8888887775332 6677777777888888888888888888776 344443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-06 Score=80.53 Aligned_cols=171 Identities=12% Similarity=0.151 Sum_probs=116.9
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.+...+..|+..+...+++++|.++.+...+.. |-....|-.+...+.+.++.+++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 5567899999999999999999999999877763 33444555555566666665544433 23
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh
Q 035749 137 MDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (405)
+.......++..+..++..+... .-+...+..++.+|.+.|+.+++..+++++.+.. +.++.+.|.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 33344444554444445555543 3344567778888888888888888888888876 66777888888888887 88
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 217 EGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
++|.+++.+.... +...+++..+.++|.++...
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 8888888777653 44445666666666666654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-06 Score=80.76 Aligned_cols=222 Identities=12% Similarity=0.102 Sum_probs=146.9
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
+.+...|..|+..+...+++++|.++.+..++.. |.....|..+...+.+.++.+++..+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~--------- 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-------KKSISALYISGILSLSRRPLNDSNLL--NL--------- 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CcceehHHHHHHHHHhhcchhhhhhh--hh---------
Confidence 3456789999999999999999999999888864 44455566666577777776665554 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF 175 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (405)
+.......++.-...++..+... .-+..++..++.+|-+.|+.+++..+++++++.. +-++.+.+.+...|
T Consensus 90 ------l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ 160 (906)
T PRK14720 90 ------IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSY 160 (906)
T ss_pred ------hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 22233333443333344444443 2244577778888888888888888888888887 66788888888888
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC-------------------CCCCchh
Q 035749 176 CLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK-------------------GIKPTVV 236 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~ 236 (405)
... +.++|..++.++... +...+++..+.++|.++... +..--..
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHH
Confidence 888 888888888877654 33333444444444444433 2222233
Q ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 035749 237 TYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLC 281 (405)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 281 (405)
++..+...|...++++++..+++.+++.. +.|......++.+|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 44555566667777888888888877764 445666666666665
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.2e-08 Score=73.23 Aligned_cols=158 Identities=9% Similarity=0.129 Sum_probs=119.7
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
+-.|...|+++......+.... |. . .+...++.+++...++...+.+ |.+...|..+...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----------~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~ 83 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----------PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYY 83 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----------cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3467888998886555433321 11 0 1112566778888888877765 77899999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH-HcCCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL-CKNGK--MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (405)
...|++++|...|++..+..+. +...+..+..++ ...|+ .++|.+++++..+.+ +.+...+..+...+...|+++
T Consensus 84 ~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~ 161 (198)
T PRK10370 84 LWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYA 161 (198)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHH
Confidence 9999999999999999987544 777777777764 66676 599999999999886 567788888999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHH
Q 035749 183 RAKELFVSMESMGCKHNVFSYSI 205 (405)
Q Consensus 183 ~a~~~~~~~~~~~~~~~~~~~~~ 205 (405)
+|...++++.+.. +|+..-+..
T Consensus 162 ~Ai~~~~~aL~l~-~~~~~r~~~ 183 (198)
T PRK10370 162 QAIELWQKVLDLN-SPRVNRTQL 183 (198)
T ss_pred HHHHHHHHHHhhC-CCCccHHHH
Confidence 9999999998875 455444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.1e-07 Score=68.64 Aligned_cols=165 Identities=11% Similarity=0.048 Sum_probs=137.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035749 94 DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMD 173 (405)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (405)
|... ..+...+...|+-+....+....... .+.+......++....+.|++..|...+++..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4555 66777788888888888887776544 23355666678899999999999999999998876 889999999999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHH
Q 035749 174 GFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVER 253 (405)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (405)
+|.+.|+++.|..-|.+..+.. +.++...+.+...+.-.|+.+.|..++......+ .-|...-..+.......|+++.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999999998875 5577788899999999999999999999988864 3366777788888899999999
Q ss_pred HHHHHHHHHH
Q 035749 254 AFKLFDEMQR 263 (405)
Q Consensus 254 a~~~~~~~~~ 263 (405)
|..+...-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9998776543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-06 Score=66.25 Aligned_cols=250 Identities=13% Similarity=0.042 Sum_probs=144.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (405)
++-+.-.|++..++..-....... -+...-..+.++|...|.+..... .+.... .|....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 344555677776665554443321 233334445566666666544332 222222 33444444444444444444
Q ss_pred HHHHH-HHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHH
Q 035749 182 NRAKE-LFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDE 260 (405)
Q Consensus 182 ~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (405)
+.-.. +.+.+.......+......-...|+..+++++|++...... +......=+..+.+..+.+-|...+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 33333333323333333444556778888888888776621 223333334556677778888888888
Q ss_pred HHHcCCCccHHHHHHHHHHHhc----CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCc
Q 035749 261 MQRHGVAADTWAYRTFIDGLCK----NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVL 336 (405)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 336 (405)
|.+- .+..+++.+..++.+ .+....|.-+|+++.+.- +|++.+.+..+.++...|++++|..+++.......
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 8764 255666666666654 345777888888887643 77888888888888888888888888888776533
Q ss_pred CccHHHHHHHHHHHHcCCCHHH-HHHHHHHHHh
Q 035749 337 IADVVTYNIMIHALCADGKMDK-AHDLFLDMEA 368 (405)
Q Consensus 337 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 368 (405)
. ++.+...++.+-...|...+ ..+.+.++..
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 2 56666666666566665443 3445555554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.8e-07 Score=80.52 Aligned_cols=148 Identities=9% Similarity=0.038 Sum_probs=124.8
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHH
Q 035749 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSV 135 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (405)
.+.++..+..|.....+.|++++|..+++...+.. |.+......++..+.+.+++++|+..+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 35668899999999999999999999999999874 556788888999999999999999999999987544 6777888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILI 207 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 207 (405)
+..++...|++++|..+|+++...+ +.+..++..+..++...|+.++|...|+...+.. .+....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 8889999999999999999999843 5568889999999999999999999999998764 34445554443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-07 Score=65.94 Aligned_cols=117 Identities=9% Similarity=-0.026 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 39 LNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLF 118 (405)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 118 (405)
..+|+++++.+ |+ .+..+...+...|++++|...|+...... |.+...|..+..++...|++++|...|
T Consensus 13 ~~~~~~al~~~--------p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVD--------PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHcC--------HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34666666543 33 24456677777888888888888877664 557777777888888888888888888
Q ss_pred HHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 035749 119 IEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVY 168 (405)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (405)
+......+ .+...+..+..++...|++++|...|+..++.. +.+...+
T Consensus 82 ~~Al~l~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~ 129 (144)
T PRK15359 82 GHALMLDA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWS 129 (144)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 88877643 366777777777777888888888888777763 3333333
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.2e-06 Score=62.68 Aligned_cols=250 Identities=15% Similarity=0.143 Sum_probs=125.6
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
++-+.-.|++..++..-+..... +.+...-..+.++|...|++..... +++... .|.......+....
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--------~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~ 82 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--------KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYL 82 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--------cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHh
Confidence 45556667777776665554432 2333444445556666665544333 222222 23333333333333
Q ss_pred HhcCCHHHHH-HHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 035749 106 CYANDSNEAK-RLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 106 ~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
..-++.++-+ ++.+.+.......+......-+..|+..|++++|++...... +......=..++.+..+++-|
T Consensus 83 ~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 83 ELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred hCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 333444333333232333344455667777777776665521 112222223344556666777
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhh----cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHH
Q 035749 185 KELFVSMESMGCKHNVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDE 260 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (405)
.+.+++|.+.. +..+.+.|.+++.+ .+...+|.-+|+++.++ .+|+..+.+....++...+++++|..+++.
T Consensus 157 ~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 157 EKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 77777776542 34444444444433 34566666677666653 356666666666666666777777777766
Q ss_pred HHHcCCCccHHHHHHHHHHHhcCCCh-HHHHHHHHHHHh
Q 035749 261 MQRHGVAADTWAYRTFIDGLCKNGYI-VEALELFRTLRI 298 (405)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 298 (405)
.+... ..++.++..++.+-...|.. +-..+.+.+++.
T Consensus 233 aL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 233 ALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 66554 33455554444444444433 333444444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-06 Score=78.48 Aligned_cols=148 Identities=11% Similarity=0.033 Sum_probs=118.4
Q ss_pred CCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHH
Q 035749 231 IKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSC 310 (405)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 310 (405)
...+...+..|.....+.|.+++|..+++.+.+.. |.+......+...+.+.+++++|+...++..... +.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 34567788888888889999999999999988874 5556677788888889999999999999988876 667778888
Q ss_pred HHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035749 311 LIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLM 382 (405)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 382 (405)
++.++...|++++|..+|+++...+ +.+..++..+..++...|+.++|...|+++.+. ..|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 8888999999999999999988732 235788888888999999999999999998876 344445554443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-05 Score=70.29 Aligned_cols=267 Identities=18% Similarity=0.165 Sum_probs=134.6
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 035749 23 STLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVI 102 (405)
Q Consensus 23 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (405)
...|-.|....++++|+.+-+.. + .|.-...-...++.+...|+-++|-++- .. +..+ ...|
T Consensus 561 e~aigmy~~lhkwde~i~lae~~---~------~p~~eklk~sy~q~l~dt~qd~ka~elk----~s----dgd~-laai 622 (1636)
T KOG3616|consen 561 EEAIGMYQELHKWDEAIALAEAK---G------HPALEKLKRSYLQALMDTGQDEKAAELK----ES----DGDG-LAAI 622 (1636)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhc---C------ChHHHHHHHHHHHHHHhcCchhhhhhhc----cc----cCcc-HHHH
Confidence 34566677777888887765542 1 2333334455556666667666665431 11 1111 2345
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----------------------C
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI----------------------G 160 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------~ 160 (405)
+.|.+.|.+.+|.+....=.. ...|......+..++.+..-+++|-.+|+++..- .
T Consensus 623 qlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfa 700 (1636)
T KOG3616|consen 623 QLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA 700 (1636)
T ss_pred HHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh
Confidence 556666666655543221110 1123333333333333333333333333333210 0
Q ss_pred CCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH
Q 035749 161 VRPNAFVY-NTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN 239 (405)
Q Consensus 161 ~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (405)
+|..+... ......+...|+++.|...|-+... ....+.+....+.|.+|+.+++.+.... .-..-|.
T Consensus 701 fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~ 769 (1636)
T KOG3616|consen 701 FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYG 769 (1636)
T ss_pred CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccch
Confidence 11111111 1222233344444444444333211 1123444556677788888887776653 2334466
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSG 319 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (405)
.+...|...|+++.|.++|-+.- .+.-.+.+|.+.|+|+.|.++-.+... .......|..-..-.-..|
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhc
Confidence 67777888888888887775432 233456777888888888777665542 2334444544455556666
Q ss_pred CHHHHHHHHhhc
Q 035749 320 RLKIAWELFHSL 331 (405)
Q Consensus 320 ~~~~a~~~~~~~ 331 (405)
++.+|.+++-.+
T Consensus 839 kf~eaeqlyiti 850 (1636)
T KOG3616|consen 839 KFAEAEQLYITI 850 (1636)
T ss_pred chhhhhheeEEc
Confidence 666666665443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.8e-06 Score=62.98 Aligned_cols=195 Identities=14% Similarity=0.099 Sum_probs=143.1
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDA-VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYA 108 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (405)
....+.++.++++..++...+.. ...++. ..|..++-+....|+.+-|...++++...- |-+..+-..-.-.+-..
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~ 99 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEAT 99 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHh
Confidence 34556777777777776543211 023343 367777888888999999999999988763 43444433333345567
Q ss_pred CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 035749 109 NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELF 188 (405)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (405)
|++++|+++|+.+++.++ .|..++..-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-++
T Consensus 100 ~~~~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 899999999999998863 36666766666777778888888888888776 5789999999999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHhhcC---ChHHHHHHHHHHHhCC
Q 035749 189 VSMESMGCKHNVFSYSILINGYCKNK---EIEGALSLYSEMLSKG 230 (405)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 230 (405)
+++.-.. |.++..+..+...+.-.| +...+.+.|.+.++..
T Consensus 178 EE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 178 EELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9998764 556666666666655444 6778899999988863
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.8e-07 Score=65.85 Aligned_cols=98 Identities=11% Similarity=0.035 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
......+...+...|++++|...|+.+...+ +.+...+..+...+...|++++|...+++..+.+ +.+...+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 88 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPY 88 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHH
Confidence 3445555566666666666666666666543 3455666666666666666666666666665543 4455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
..+..++...|++++|...|+...+.
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666666666666666666666554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.7e-06 Score=61.82 Aligned_cols=188 Identities=12% Similarity=0.086 Sum_probs=140.3
Q ss_pred CChHHHHHHHHHHHhC---C-CCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHH
Q 035749 74 GFVDKAKELLLQMKDK---N-INPDVV-TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEE 148 (405)
Q Consensus 74 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (405)
.+.++.++++.++... | ..++.+ .|..++-+....|+.+-|..+++.+... .+-+...-..-...+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 4556666666655432 2 345544 3556677778899999999999999876 33333443333444566799999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 035749 149 ASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (405)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (405)
|+++++.+++.+ +.|..++..-+-+.-..|+.-+|++-+....+.- ..|...|.-+...|...|++++|.-.+++++-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999986 6777778777777778888889999888888764 77999999999999999999999999999987
Q ss_pred CCCCCchhhHHHHHHHHHc---cccHHHHHHHHHHHHHcC
Q 035749 229 KGIKPTVVTYNTLFIGLFE---IHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~ 265 (405)
.. |.++..+..+...+.- ..+.+.+.++|.+.++..
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 63 3355555566555443 446788999999998864
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-05 Score=70.38 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHH
Q 035749 307 SYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDL 362 (405)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 362 (405)
+...+..-+...|++..|...|-+..+ |...+..|...+-|++|-++
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 344445555556666666555544332 33344445555555555444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-08 Score=52.85 Aligned_cols=33 Identities=55% Similarity=1.095 Sum_probs=31.5
Q ss_pred cCCCCChhHHHHHHHHHHhcCchHHHHHHHHHH
Q 035749 13 FGCEPNVITYSTLINGLCRTGHTIVALNLFEEM 45 (405)
Q Consensus 13 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 45 (405)
.|++||..+|+.+|.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 478999999999999999999999999999987
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.6e-07 Score=64.26 Aligned_cols=110 Identities=14% Similarity=0.122 Sum_probs=82.0
Q ss_pred HHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 035749 41 LFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIE 120 (405)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 120 (405)
.++++++.. |.+......+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|..+++.
T Consensus 5 ~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 5 TLKDLLGLD-------SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred hHHHHHcCC-------hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666553 3455667777777888888888888888887764 55777788888888888888888888888
Q ss_pred HHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 121 MMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
..+.+ +.+...+..+..++...|++++|...++...+.
T Consensus 77 ~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 77 AAALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77764 335666777777888888888888888887776
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-08 Score=51.36 Aligned_cols=32 Identities=34% Similarity=0.642 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 370 GVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 370 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
|+.||..+|+.++.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-05 Score=65.45 Aligned_cols=140 Identities=12% Similarity=0.103 Sum_probs=75.1
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHH
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE 288 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 288 (405)
.+...|++++|+..++.++... +-|..........+.+.++.++|.+.++++.... +........+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 3444556666666666655541 2233333344455556666666666666665542 2223444445556666666666
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 289 ALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
|..+++...... +.|+..|..|.++|...|+..++..-. ...+...|+++.|+..+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHH
Confidence 666666555443 455556666666666666555554332 2234445666666666666655
Q ss_pred C
Q 035749 369 K 369 (405)
Q Consensus 369 ~ 369 (405)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.3e-05 Score=64.13 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=60.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHH
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPN-AFVYNTLMDGFCLTGRVNR 183 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 183 (405)
+...|.+++|+..++.++..- +-|..........+.+.++.++|.+.++++... .|+ ......+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 344555555555555555442 224444444445555555555555555555554 222 3334445555555555555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 035749 184 AKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (405)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (405)
|+.+++...... +.++..|..|.++|...|+..++.....+..
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 555555554443 4455555555555555555555554444433
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.6e-06 Score=61.29 Aligned_cols=115 Identities=11% Similarity=0.000 Sum_probs=53.2
Q ss_pred CCChHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCcc--HHHHHHHHHHHHcCCCHH
Q 035749 283 NGYIVEALELFRTLRILKCELD---IRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIAD--VVTYNIMIHALCADGKMD 357 (405)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 357 (405)
.++...+...++.+.... +.+ ......+...+...|++++|...|+.+......|+ ......+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 445555555555554432 222 12233344445555555555555555554432221 112333445555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 358 KAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 358 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
+|+..++..... ...+..+.....++.+.|++++|+..|++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555443221 22233344445555555555555555554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.3e-06 Score=59.40 Aligned_cols=125 Identities=13% Similarity=0.123 Sum_probs=83.5
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHcCCCcc---HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCcc--HHHHHHHH
Q 035749 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD---TWAYRTFIDGLCKNGYIVEALELFRTLRILKCELD--IRSYSCLI 312 (405)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 312 (405)
|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......++ ......++
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444443 3677777777777777653 223 22333455677778888888888888877652222 22445567
Q ss_pred HHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 313 DGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDM 366 (405)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 366 (405)
..+...|++++|+..++...... .....+...+..+...|++++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77888888888888887755432 34556677788888888888888888764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.9e-06 Score=68.53 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=96.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 035749 203 YSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK 282 (405)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (405)
...++..+...++++.|+.+++++.+.. |+ ....++..+...++..+|.+++.+.+... +.+...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455666667788888888888888763 44 34456777777788888888888888653 5567777777778888
Q ss_pred CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 035749 283 NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
.++++.|+.+.+++.... |.+..+|..|+.+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888999999998888775 5666788889999999999999988888765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-05 Score=67.18 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF 175 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (405)
.....|+..+...++++.|+.+++++.+.. |+ ....+++.+...++-.+|.+++.+.++.. +.+......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334455666666778888888888887663 33 33456677777777778888888777653 45666666667777
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 035749 176 CLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (405)
...++++.|+.+.+++.... |.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 78888888888888887764 4455678888888888888888887777654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00017 Score=59.37 Aligned_cols=158 Identities=11% Similarity=0.039 Sum_probs=87.8
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH-------------
Q 035749 173 DGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN------------- 239 (405)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------- 239 (405)
.++...|+.++|.+.--...+.. ..+......-..++.-.++.+.+...|++.+..+ |+...-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 35556666676666666555543 2222222222233444566677777777666542 3322111
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHc---CCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQRH---GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLC 316 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (405)
.-..-..+.|++..|.+.|.+.+.. +..++...|.....+..+.|+..+|+.--+.....+ +.-...+..-+.++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHH
Confidence 1112245667777777777777653 233444555555666667777777777776666543 222334444555666
Q ss_pred hcCCHHHHHHHHhhccCC
Q 035749 317 KSGRLKIAWELFHSLPRG 334 (405)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~ 334 (405)
..++|++|.+-+++..+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 677777777777766543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0011 Score=60.30 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=40.1
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN 109 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (405)
.+.|+.++|..+++.....+ +.|..+...+-.+|.+.++.++|..+|++.... -|+......+..+|.+.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~-------~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLK-------GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREK 124 (932)
T ss_pred HHhcCchhHHHHHhhhccCC-------CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH
Confidence 45666666665555544432 235555666666666666666666666666554 234444444444555554
Q ss_pred CHH
Q 035749 110 DSN 112 (405)
Q Consensus 110 ~~~ 112 (405)
++.
T Consensus 125 ~yk 127 (932)
T KOG2053|consen 125 SYK 127 (932)
T ss_pred HHH
Confidence 443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.1e-06 Score=54.72 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
++..+...+...|++++|+..++++.+.. +.+...+..+..++...+++++|.+.++...... +.+..++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHH
Confidence 35566677777888888888888877654 3444667777777777788888888887777654 344556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
+...+...|++++|...+....+.
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcc
Confidence 777777777777777777776543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-05 Score=55.38 Aligned_cols=102 Identities=11% Similarity=0.040 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NPDVVT 97 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 97 (405)
.++..++..+.+.|++++|.+.|+.+.+..+. .+.....+..+..++.+.|+++.|...|+.+..... +....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK----STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 34566677777778888888888777765421 111245666677777777778888887777765421 112455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQG 125 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (405)
+..+..++...|+.++|...++++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 6666777777777777777777777653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2e-05 Score=56.33 Aligned_cols=96 Identities=7% Similarity=-0.120 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL 140 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (405)
.....+...+...|++++|.++|+.+.... +-+...|-.|..++-..|++++|+..|......++. ++..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence 334444444445555555555555544432 334444444555555555555555555555444322 444444445555
Q ss_pred HcCCCHHHHHHHHHHHHH
Q 035749 141 CKNGKMEEASQLLELMIQ 158 (405)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~ 158 (405)
...|+.+.|.+.|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555554444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0019 Score=58.79 Aligned_cols=225 Identities=12% Similarity=0.060 Sum_probs=135.9
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYA 108 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (405)
....+++.+|++-.+++.+..| ..+-+.++.+ -.+.+.|+.++|..+++.....+ +.|..+...+-.+|...
T Consensus 19 ~ld~~qfkkal~~~~kllkk~P-----n~~~a~vLka--Lsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHP-----NALYAKVLKA--LSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDL 90 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCC-----CcHHHHHHHH--HHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHH
Confidence 4567899999999999998762 1222233333 34678999999999998887665 33888999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--------
Q 035749 109 NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGR-------- 180 (405)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------- 180 (405)
+..++|..+|++..+. -|+......+..+|.+.+.+.+-.++--++-+. ++.....+=.+++.+.+...
T Consensus 91 ~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccc
Confidence 9999999999999876 456777888888999888877655544444332 23344444444444433211
Q ss_pred --HHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhcCChHHHHHHHHH-HHhCCCCCchhhHHHHHHHHHccccHHHHHH
Q 035749 181 --VNRAKELFVSMESMGCKH-NVFSYSILINGYCKNKEIEGALSLYSE-MLSKGIKPTVVTYNTLFIGLFEIHQVERAFK 256 (405)
Q Consensus 181 --~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 256 (405)
..-|.+..+.+.+.+.+. +..-.......+...|++++|..++.. ..+.-..-+...-+.-+..+...+++.+..+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 123444555554433111 111222233344556677777777732 2222122222222333444445555555555
Q ss_pred HHHHHHHc
Q 035749 257 LFDEMQRH 264 (405)
Q Consensus 257 ~~~~~~~~ 264 (405)
+-.++...
T Consensus 248 l~~~Ll~k 255 (932)
T KOG2053|consen 248 LSSRLLEK 255 (932)
T ss_pred HHHHHHHh
Confidence 55555444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0013 Score=56.29 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHhCC-CCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCChHHHHHHH
Q 035749 216 IEGALSLYSEMLSKG-IKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA-DTWAYRTFIDGLCKNGYIVEALELF 293 (405)
Q Consensus 216 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 293 (405)
.+....+++++.... ..|+ .+|...+....+..-...|..+|.++.+.+..+ +..+..+++..++ .++.+-|..+|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 566677777776642 2333 467788888888889999999999999887666 5666677777665 58899999999
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCcc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 294 RTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIAD--VVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
+--.+.- ..++.-....+..+...++-..+..+|+++...+..|+ ...|..++..-..-|+...+.++-+++...
T Consensus 425 eLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9866542 44555567778888899999999999999988755554 578999999889999999999998887764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-05 Score=67.19 Aligned_cols=124 Identities=11% Similarity=0.143 Sum_probs=91.5
Q ss_pred CCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHH
Q 035749 265 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK--CELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVT 342 (405)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 342 (405)
+.+.+...+..++..+....+.+.+..++-+.+... ...-..+..++++.|...|..+++..+++.=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 335566667777777777777888888877776541 112233456888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 035749 343 YNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRN 388 (405)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 388 (405)
++.|+..+.+.|++..|.++.-.|...+...++.|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887776666666666555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.7e-06 Score=56.21 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=54.0
Q ss_pred cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH
Q 035749 32 TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS 111 (405)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (405)
+|+++.|+.+|+++.+..+ ..++...+..+..++.+.|++++|+.++++ .+.+ +.+......+..++.+.|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-----~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-----TNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-----GTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-H
T ss_pred CccHHHHHHHHHHHHHHCC-----CChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCH
Confidence 5778888888888877651 012455666678888888888888888877 3222 22345555667778888888
Q ss_pred HHHHHHHHH
Q 035749 112 NEAKRLFIE 120 (405)
Q Consensus 112 ~~a~~~~~~ 120 (405)
++|++++++
T Consensus 75 ~eAi~~l~~ 83 (84)
T PF12895_consen 75 EEAIKALEK 83 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888887765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=6e-05 Score=53.92 Aligned_cols=98 Identities=10% Similarity=-0.067 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHH
Q 035749 270 TWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHA 349 (405)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (405)
...+..+...+...|++++|..+|+.+.... +.+..-|..|..++...|++++|+..|.......+ .|+..+..+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3344455556667788888888888877665 55667777788888888888888888887766543 367777778888
Q ss_pred HHcCCCHHHHHHHHHHHHhC
Q 035749 350 LCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 350 ~~~~g~~~~A~~~~~~~~~~ 369 (405)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.6e-05 Score=53.03 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--ccHhhHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ--PNVVTFSVI 136 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 136 (405)
.++..++..+.+.|++++|.+.|+.+.+... +.....+..+..++.+.|+++.|...|+.+....+. .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3455566666666666666666666655421 011234555666666666666666666666553211 113345555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc
Q 035749 137 MDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
..++.+.|++++|...++.+.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55666666666666666666655
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.8e-05 Score=65.01 Aligned_cols=94 Identities=12% Similarity=0.033 Sum_probs=79.9
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIR 103 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (405)
.....+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++.+.. +.+...|..+..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~ 78 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-------PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGT 78 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34566778899999999999999876 5677888899999999999999999999998875 557788888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 035749 104 GFCYANDSNEAKRLFIEMMDQG 125 (405)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~ 125 (405)
++...|++++|+..|++.++..
T Consensus 79 ~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 79 ACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999988764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0016 Score=54.48 Aligned_cols=380 Identities=13% Similarity=0.098 Sum_probs=207.3
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 035749 5 ALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLL 84 (405)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (405)
++-+++.+. |.|..+|..||.-+...|.+++-.++++++..- +|--+.+|...+..-...+++.....+|.
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-------fp~~~~aw~ly~s~ELA~~df~svE~lf~ 100 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-------FPIMEHAWRLYMSGELARKDFRSVESLFG 100 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-------CccccHHHHHHhcchhhhhhHHHHHHHHH
Confidence 445555554 677889999999999999999999999999764 34556788888888888899999999999
Q ss_pred HHHhCCCCCChHHHHHHHHHHHhcCCHH------HHHHHHHHHHH-CCCCcc-HhhHHHHHHH---HHcCCCH------H
Q 035749 85 QMKDKNINPDVVTYNSVIRGFCYANDSN------EAKRLFIEMMD-QGVQPN-VVTFSVIMDE---LCKNGKM------E 147 (405)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~-~~~~~~-~~~~~~l~~~---~~~~~~~------~ 147 (405)
+..... .+...|...+....+.+..- ...+.|+-.+. .++.|- ...|+..+.. .-..|.| +
T Consensus 101 rCL~k~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid 178 (660)
T COG5107 101 RCLKKS--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRID 178 (660)
T ss_pred HHHhhh--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHH
Confidence 988764 45677777666544443211 11233333332 233332 2333333322 2223333 3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHH------HHHHH-------ccCCHHHHHHHHHHHHhc--CC----CCC---------
Q 035749 148 EASQLLELMIQIGVRPNAFVYNTL------MDGFC-------LTGRVNRAKELFVSMESM--GC----KHN--------- 199 (405)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l------~~~~~-------~~~~~~~a~~~~~~~~~~--~~----~~~--------- 199 (405)
.....+.+++...+..-...|+.. ++... ..--+..|...++++... |. +.+
T Consensus 179 ~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r 258 (660)
T COG5107 179 KIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR 258 (660)
T ss_pred HHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc
Confidence 444555555543221111111110 00000 001123333333333211 10 000
Q ss_pred -------------------------------------------hhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh
Q 035749 200 -------------------------------------------VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV 236 (405)
Q Consensus 200 -------------------------------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (405)
+..|--.-..+...++-+.|+......... .|+..
T Consensus 259 ~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~ 336 (660)
T COG5107 259 TSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLT 336 (660)
T ss_pred cccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchh
Confidence 001111111122234444444444333221 22211
Q ss_pred hHHHHHHHHHccccHHHHHHHHHHHHH--------------cCCC---------------ccHHHHHHHHHHHhcCCChH
Q 035749 237 TYNTLFIGLFEIHQVERAFKLFDEMQR--------------HGVA---------------ADTWAYRTFIDGLCKNGYIV 287 (405)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~~~---------------~~~~~~~~l~~~~~~~~~~~ 287 (405)
-.+...|.-.++-+.....|+...+ .+.. .-..++...+....+....+
T Consensus 337 --~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~ 414 (660)
T COG5107 337 --MFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLE 414 (660)
T ss_pred --eeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHH
Confidence 1122223333333333333332211 0110 11223445566666677788
Q ss_pred HHHHHHHHHHhcC-CCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHH-HHHHHHHHcCCCHHHHHHHHHH
Q 035749 288 EALELFRTLRILK-CELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTY-NIMIHALCADGKMDKAHDLFLD 365 (405)
Q Consensus 288 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~ 365 (405)
.|..+|-++.+.+ ..+++.++++++..++ .|++.-|..+|+--... .||...| +-.+..+...++-..|..+|+.
T Consensus 415 aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 415 AARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 8999999998877 4567777788777655 67888888888865443 2344433 4556667788888999999997
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 366 MEAKGVAPD--CVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 366 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
.+.+ +..+ ...|..++.--..-|+...+..+-++|.+
T Consensus 492 sv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 492 SVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7665 3334 56788888888888888887777666643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=5e-06 Score=54.03 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHH
Q 035749 283 NGYIVEALELFRTLRILKCE-LDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHD 361 (405)
Q Consensus 283 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 361 (405)
.|+++.|+.+++++...... ++...+..++.++.+.|++++|..+++. .+.+. .+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35555666666665554321 1333444455566666666666666655 22111 122333344555556666666665
Q ss_pred HHHH
Q 035749 362 LFLD 365 (405)
Q Consensus 362 ~~~~ 365 (405)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-05 Score=64.39 Aligned_cols=142 Identities=14% Similarity=0.085 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc-CCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 035749 236 VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK-NGYIVEALELFRTLRILKCELDIRSYSCLIDG 314 (405)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (405)
.+|..++....+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|..+|+...+. .+.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357778888888889999999999998653 3445556555555333 57777799999998876 36788888899999
Q ss_pred HHhcCCHHHHHHHHhhccCCCcCccH---HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 035749 315 LCKSGRLKIAWELFHSLPRGVLIADV---VTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLM 382 (405)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 382 (405)
+...++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+++.+. .|+...+..++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 99999999999999998876 33332 48888888888999999999999999885 44433333343
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-05 Score=53.24 Aligned_cols=90 Identities=20% Similarity=0.126 Sum_probs=38.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCC
Q 035749 276 FIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGK 355 (405)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 355 (405)
+...+...|++++|...++.+.+.. +.+...+..++..+...|++++|.+.++...... +.+...+..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3334444445555555554444332 2223334444444444444444444444443321 1122334444444444444
Q ss_pred HHHHHHHHHHHH
Q 035749 356 MDKAHDLFLDME 367 (405)
Q Consensus 356 ~~~A~~~~~~~~ 367 (405)
++.|...+.+..
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.6e-06 Score=44.65 Aligned_cols=33 Identities=42% Similarity=0.927 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD 374 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 374 (405)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0021 Score=53.25 Aligned_cols=267 Identities=14% Similarity=0.009 Sum_probs=166.1
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
.......+.+..++..|+..+..++... |.++..|..-+..+...|++++|.--.+.-.+.. +-....+...
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~ 123 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLRE 123 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccch
Confidence 3444556667778888999998888875 5566777777777777888888877666554432 1122333344
Q ss_pred HHHHHhcCCHHHHHHHHHHH---------------HHCC-CCccHhhHHHH-HHHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 035749 102 IRGFCYANDSNEAKRLFIEM---------------MDQG-VQPNVVTFSVI-MDELCKNGKMEEASQLLELMIQIGVRPN 164 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~---------------~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (405)
-+++...++..+|.+.++.- .... -+|....+..+ ..++...|++++|.+.--.+++.+ ..+
T Consensus 124 ~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n 202 (486)
T KOG0550|consen 124 GQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATN 202 (486)
T ss_pred hhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cch
Confidence 44444444444444333311 1111 11222333322 335567788888888877777664 333
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChh-------------hHHHHHHHHhhcCChHHHHHHHHHHHhC--
Q 035749 165 AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVF-------------SYSILINGYCKNKEIEGALSLYSEMLSK-- 229 (405)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 229 (405)
......-..++.-.++.+.+...|++....+ |+-. .+..-.+-..+.|++..|.+.|.+.+..
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 3333333445667778888988888887664 3211 1222234456789999999999998875
Q ss_pred -CCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 035749 230 -GIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK 300 (405)
Q Consensus 230 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 300 (405)
++.|+...|........+.|+..+|+.--....+.+ +.-...+..-..++...++|++|.+-++...+..
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 244555667667777788999999998888777542 1112233334456677788999999998887653
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.21 E-value=3e-06 Score=43.98 Aligned_cols=33 Identities=39% Similarity=0.632 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 035749 341 VTYNIMIHALCADGKMDKAHDLFLDMEAKGVAP 373 (405)
Q Consensus 341 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 373 (405)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 468888888888888888888888888888776
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.8e-05 Score=64.41 Aligned_cols=89 Identities=13% Similarity=-0.002 Sum_probs=48.8
Q ss_pred HHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHH
Q 035749 243 IGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLK 322 (405)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 322 (405)
..+...|+++.|+..|.++++.. +.+...+..+..++...|++++|+..++++.... +.+...+..++.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34445555666666665555543 3344555555555555566666665555555543 334455555555555555555
Q ss_pred HHHHHHhhccC
Q 035749 323 IAWELFHSLPR 333 (405)
Q Consensus 323 ~a~~~~~~~~~ 333 (405)
+|...|++..+
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0012 Score=52.63 Aligned_cols=183 Identities=11% Similarity=0.031 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY---NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+..+......+...|++++|.+.|+.+.... |-+.... -.++.++.+.+++++|...+++.++..+.-....+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3334444455556677777777777766542 2222222 34556666677777777777776665322111222222
Q ss_pred HHHHH--cC---------------CC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 035749 137 MDELC--KN---------------GK---MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGC 196 (405)
Q Consensus 137 ~~~~~--~~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 196 (405)
+.+.+ .. .+ ...|+..|+.+++. -|+. .-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH--
Confidence 22211 01 11 12344455555444 2222 2223333333333221
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC--CCCCchhhHHHHHHHHHccccHHHHHHHHHHHH
Q 035749 197 KHNVFSYSILINGYCKNKEIEGALSLYSEMLSK--GIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQ 262 (405)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 262 (405)
-...--.+...|.+.|.+..|+.-++.+++. +.+........+..+|...|..++|..+...+.
T Consensus 174 --la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111123455667777777777777777664 222233445566667777777777766655443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00016 Score=54.45 Aligned_cols=90 Identities=18% Similarity=0.092 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKP-DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
..+..+...+...|++++|...|+++++..+. ++ ....+..+..++.+.|++++|...+++..+.. +.+...+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 109 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEED-----PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSAL 109 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 35666777777788888888888887765411 11 24577777788888888888888888777653 3356666
Q ss_pred HHHHHHHHhcCCHHHHH
Q 035749 99 NSVIRGFCYANDSNEAK 115 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~ 115 (405)
..+...+...|+...+.
T Consensus 110 ~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHHcCChHhHh
Confidence 66677777666654443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.9e-05 Score=56.61 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP--DVVTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
..|..++..+...|++++|+..|++.......+ ...++..+...+...|++++|+..++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444444443321111 122344444444444444444444444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.3e-05 Score=60.68 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK-EGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
.+|..+++...+.+..+.|..+|.++++.. ..+..+|...+..-.. .++.+.|..+|+...+. .+.+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHH
Confidence 457777777777777888888888887543 2334455555444333 45566688888877765 45567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH---hhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV---VTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
...+..+...|+.+.|..+|++.+.. +.++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777778888888888877755 33222 35666666666666666666666666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0018 Score=53.19 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=10.5
Q ss_pred HHHHHHHccccHHHHHHHHHHHH
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQ 262 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~ 262 (405)
.+...+.+.|++++|..+|+++.
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33444444555555555555444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00056 Score=56.16 Aligned_cols=58 Identities=19% Similarity=0.282 Sum_probs=25.3
Q ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 035749 135 VIMDELCKN-GKMEEASQLLELMIQI----GVRP--NAFVYNTLMDGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 135 ~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (405)
.+...|... |++++|.+.|++..+. + .+ -..++..++..+.+.|++++|.++|+++..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444444 5556666555554432 1 00 012333444455555555555555555443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.4e-05 Score=60.61 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=60.9
Q ss_pred HHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 035749 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (405)
+.+.+++.+|+..|.++++.. +-|...|..-..+|.+.|.++.|.+-.+..+..+ +-...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 455666777777777766653 4556666666666777777777766666666554 34456666677777777777777
Q ss_pred HHHHhhccCCCcCccHHHHH
Q 035749 325 WELFHSLPRGVLIADVVTYN 344 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~ 344 (405)
.+.|++.++ +.|+-.+|-
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 777666665 345544443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.9e-05 Score=63.66 Aligned_cols=124 Identities=12% Similarity=0.143 Sum_probs=96.6
Q ss_pred CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhh
Q 035749 125 GVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFS 202 (405)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (405)
+.+.+......++..+....+.+.+..++.+..... ...-..+..++++.|...|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 344566677778888888888888888888877652 222344556888999999999999999988888899999999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHcc
Q 035749 203 YSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEI 248 (405)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (405)
++.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999988888776666666766666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.1e-06 Score=43.46 Aligned_cols=33 Identities=45% Similarity=0.917 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN 129 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (405)
+|+.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444455555555555554444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.6e-06 Score=42.96 Aligned_cols=31 Identities=45% Similarity=0.700 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ 127 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 127 (405)
+|+.++.+|.+.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00036 Score=61.92 Aligned_cols=137 Identities=9% Similarity=0.001 Sum_probs=79.9
Q ss_pred CCCCChhHHHHHHHHHHhc-----CchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC--------hHHHH
Q 035749 14 GCEPNVITYSTLINGLCRT-----GHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF--------VDKAK 80 (405)
Q Consensus 14 ~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~ 80 (405)
+.+.+..+|...+++.... ++...|+.+|+++++.+ |.....|..+..++..... ...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-------P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~ 404 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-------PDFTYAQAEKALADIVRHSQQPLDEKQLAALS 404 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4467778899888875543 33679999999999987 3445666665544432211 22222
Q ss_pred HHHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 81 ELLLQMKDK-NINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 81 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
+..++.... ..+.++..|..+.......|++++|...+++.+..+ |+...|..+...+...|+.++|...+++....
T Consensus 405 ~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 405 TELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 333322221 123344555555555555666666666666666553 35556666666666666666666666666554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0013 Score=48.02 Aligned_cols=155 Identities=15% Similarity=0.072 Sum_probs=94.0
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHH
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE 288 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 288 (405)
+..+.-+++...+-..+-.. ..|+...-..+..+..+.|++.+|...|.+...--...|...+-.+.++....+++..
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence 33444444444333332222 3456666666777777788888888888777765455667777777777777778877
Q ss_pred HHHHHHHHHhcCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 289 ALELFRTLRILKCE-LDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 289 a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
|...++.+.+.+.. -++.....+.+.+...|++.+|..-|+..... -|+...-......+.++|+.+++..-+..+.
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 77777777654310 12233455667777778877777777777764 3344444444455566776666554444433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.4e-05 Score=49.49 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCChHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCccHhh
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNI-NPDVVTYNSVIRGFCYAN--------DSNEAKRLFIEMMDQGVQPNVVT 132 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 132 (405)
+-...|..+...+++.....+|+.+++.|+ -|++.+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999998 889999999988877653 23356677888887788888888
Q ss_pred HHHHHHHHHc
Q 035749 133 FSVIMDELCK 142 (405)
Q Consensus 133 ~~~l~~~~~~ 142 (405)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8877776653
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00026 Score=56.14 Aligned_cols=116 Identities=12% Similarity=0.117 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC---CHH
Q 035749 36 IVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN---DSN 112 (405)
Q Consensus 36 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~ 112 (405)
+..+.-++.-++.+ |.|..-|-.|...|...|+++.|...|.+..+.. ++++..+..+..++.... ...
T Consensus 139 ~~l~a~Le~~L~~n-------P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 139 EALIARLETHLQQN-------PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTA 210 (287)
T ss_pred HHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccH
Confidence 33444444444443 5566777777777777777777777777766653 456666666665554432 345
Q ss_pred HHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 113 EAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
++..+|++++..+.. ++.+...+...+...|++.+|...|+.|.+..
T Consensus 211 ~a~~ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 211 KARALLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 666777777665433 56666666666777777777777777777663
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0024 Score=50.85 Aligned_cols=184 Identities=9% Similarity=-0.031 Sum_probs=117.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhh---HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 035749 94 DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVT---FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNT 170 (405)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (405)
++..+-.....+...|++++|.+.|+.+...-+.+ ... ...++.++.+.+++++|...+++..+....-...-+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 44444455666778999999999999998864332 222 24567888999999999999999988742211222222
Q ss_pred HHHHHH--ccC---------------C---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 035749 171 LMDGFC--LTG---------------R---VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (405)
Q Consensus 171 l~~~~~--~~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (405)
.+.+.+ ..+ + ..+|+..|+.+.+. -|+. .-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-
Confidence 222222 111 2 23455666666554 2332 2234444444333321
Q ss_pred CCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc--CCCccHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 035749 231 IKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH--GVAADTWAYRTFIDGLCKNGYIVEALELFRTLR 297 (405)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (405)
-...--.+..-|.+.|.+..|..-++.+++. +.+.....+..+..+|...|..++|......+.
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0011125667788999999999999999875 334456678888999999999999998877654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=49.26 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=46.5
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
...|++++|+++|+++.+.. |.+..++..++.++.+.|++++|.++++++... .|+...|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHH
Confidence 46788888888888888875 557788888888888888888888888888876 345334433
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.7e-05 Score=47.05 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=46.9
Q ss_pred HHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 25 LINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 25 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
+...+.+.|++++|+..|+++++.. |.+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567788888888888888888875 557888888888888888888888888888765
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00019 Score=53.90 Aligned_cols=81 Identities=15% Similarity=0.007 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 035749 95 VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQP--NVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLM 172 (405)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (405)
...|..++..+...|++++|+..|++.......+ ...++..+..++...|++++|...+++..+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4556666667777777777777777776543222 22456667777777777777777777776653 33344444555
Q ss_pred HHHH
Q 035749 173 DGFC 176 (405)
Q Consensus 173 ~~~~ 176 (405)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0004 Score=54.85 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=61.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
+.+.+++.+|+..|.+.++..+. |...|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|++.+|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 44566677777777777766333 56666666667777777777777777666654 33455667777777777777777
Q ss_pred HHHHHHHHhcCCCCChhhH
Q 035749 185 KELFVSMESMGCKHNVFSY 203 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ 203 (405)
++.|++..+. .|+-.+|
T Consensus 169 ~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESY 185 (304)
T ss_pred HHHHHhhhcc--CCCcHHH
Confidence 7777776665 3444444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00013 Score=59.97 Aligned_cols=270 Identities=14% Similarity=0.080 Sum_probs=168.0
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHH--HhC--CC-CCChHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQM--KDK--NI-NPDVVTYNS 100 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~-~~~~~~~~~ 100 (405)
..-+++.|+....+.+|+.+++.+.+- .+.-..+|..|..+|.-.+++++|++....= ..+ |- .-...+-..
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeD---l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTED---LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchH---HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 456899999999999999999876210 1222456788888888889999998865421 111 10 012233344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH----HCCC-CccHhhHHHHHHHHHcCCC--------------------HHHHHHHHHH
Q 035749 101 VIRGFCYANDSNEAKRLFIEMM----DQGV-QPNVVTFSVIMDELCKNGK--------------------MEEASQLLEL 155 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~ 155 (405)
|...+--.|.+++|+....+-+ +.|- .....++..+...|...|+ ++.|.++|..
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 5555666677777775543322 2221 1133455566777765543 2334444433
Q ss_pred HHH----cCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH----hcCCC-CChhhHHHHHHHHhhcCChHHHHHHHHH
Q 035749 156 MIQ----IGV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSME----SMGCK-HNVFSYSILINGYCKNKEIEGALSLYSE 225 (405)
Q Consensus 156 ~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (405)
-++ .|- -.-...|..|.+.|.-.|+++.|+...+.-. +.|-. ....++..+.+++.-.|+++.|.+.|..
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 222 111 1122457777788888999999987765432 22211 2345678888999999999999999887
Q ss_pred HHh----CCC-CCchhhHHHHHHHHHccccHHHHHHHHHHHHHc-----CCCccHHHHHHHHHHHhcCCChHHHHHHHHH
Q 035749 226 MLS----KGI-KPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH-----GVAADTWAYRTFIDGLCKNGYIVEALELFRT 295 (405)
Q Consensus 226 ~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 295 (405)
... .|- .........+...|.-..++++|+.++.+-+.. ...-....+..+..++...|..++|+.+.+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 543 221 123344556777888888899999888764321 1123456778888899999999999887766
Q ss_pred HHh
Q 035749 296 LRI 298 (405)
Q Consensus 296 ~~~ 298 (405)
..+
T Consensus 341 hl~ 343 (639)
T KOG1130|consen 341 HLR 343 (639)
T ss_pred HHH
Confidence 543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00057 Score=51.49 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP--DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
....+..+...+...|++++|...|++..+....+ ....+..+...+.+.|++++|...+++..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 45567888888888999999999999887653222 1467888888888999999999999888876332 45666667
Q ss_pred HHHHHcCCCHHHHHHH
Q 035749 137 MDELCKNGKMEEASQL 152 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~ 152 (405)
..++...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7777777765554433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0025 Score=49.41 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
...+-.....+...|++.+|+..|+.+....+. .+-...+...++.++.+.|+++.|...+++..+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~----s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN----SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555667778899999999999999887642 2334567778888899999999999999998776
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.9e-05 Score=47.62 Aligned_cols=65 Identities=20% Similarity=0.123 Sum_probs=58.7
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEG-FVDKAKELLLQMKDK 89 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 89 (405)
++.+|..+...+...|++++|+..|+++++.+ |.++..|..+..++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999986 567889999999999999 799999999988764
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0089 Score=53.17 Aligned_cols=331 Identities=14% Similarity=0.066 Sum_probs=183.4
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHH----------HHHHhcCChHHHHHHHHH
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTII----------DGLCKEGFVDKAKELLLQ 85 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~a~~~~~~ 85 (405)
.|.+..|..+.......-.++.|...|-+...-. .......|- +.-.--|++++|.++|-.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~---------Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA---------GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc---------chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhc
Confidence 5888899999988888888888888887764422 222222221 222234788899888877
Q ss_pred HHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 035749 86 MKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ-GVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPN 164 (405)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (405)
+-++. ..+..+.+.|+|-...++++.--.. .-..-..+++.+...++....|++|.+.|......
T Consensus 760 ~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----- 825 (1189)
T KOG2041|consen 760 ADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----- 825 (1189)
T ss_pred cchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----
Confidence 65542 3355566778877766665431110 00112456788888888888888888888765321
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 035749 165 AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIG 244 (405)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (405)
...+.++.+..++++.+.+.+.+ +.+....-.+..++.+.|.-++|.+.|-+.-. | ...+..
T Consensus 826 ----e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~t 887 (1189)
T KOG2041|consen 826 ----ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHT 887 (1189)
T ss_pred ----HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHH
Confidence 24566777777777666655544 34555666777888888888888776644321 2 234556
Q ss_pred HHccccHHHHHHHHHHHHHcCCCccHHHH--------------HHHHHHHhcCCChHHHHHHHHHHHhc----CCCccH-
Q 035749 245 LFEIHQVERAFKLFDEMQRHGVAADTWAY--------------RTFIDGLCKNGYIVEALELFRTLRIL----KCELDI- 305 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~- 305 (405)
|...++|.+|.++-+...- |...++ ...+..+.+.|+.-.|-+++.+|.+. +.++-.
T Consensus 888 Cv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~ 963 (1189)
T KOG2041|consen 888 CVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRL 963 (1189)
T ss_pred HHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHH
Confidence 7777788777776554321 111111 11233444555555555555555332 222211
Q ss_pred ---HHHHHH-HHHH----------HhcCCHHHHHHHHhhcc--------CCCcC-ccHHHHHHHHHHHHcCCCHHHHHHH
Q 035749 306 ---RSYSCL-IDGL----------CKSGRLKIAWELFHSLP--------RGVLI-ADVVTYNIMIHALCADGKMDKAHDL 362 (405)
Q Consensus 306 ---~~~~~l-~~~~----------~~~~~~~~a~~~~~~~~--------~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 362 (405)
.++.++ +.-+ -..|..++|..+++... ++..+ .....|-.|..-....|..+.|++.
T Consensus 964 KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~T 1043 (1189)
T KOG2041|consen 964 KKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQT 1043 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 111111 1111 12455566665444321 11011 0122334444555567888888775
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHccCch
Q 035749 363 FLDMEAK-GVAPDCVAFNTLMLGCIRNNET 391 (405)
Q Consensus 363 ~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 391 (405)
--.+.+. ++-|....|..+..+-+....+
T Consensus 1044 al~L~DYEd~lpP~eiySllALaaca~raF 1073 (1189)
T KOG2041|consen 1044 ALILSDYEDFLPPAEIYSLLALAACAVRAF 1073 (1189)
T ss_pred HhhhccHhhcCCHHHHHHHHHHHHhhhhhh
Confidence 4444432 3556677777776555544333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00021 Score=49.33 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCc--cHHHHHHHHH
Q 035749 273 YRTFIDGLCKNGYIVEALELFRTLRILKCELD--IRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIA--DVVTYNIMIH 348 (405)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 348 (405)
......++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++.......+ +......+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 34456677788999999999999988775443 3456677888889999999999998877642110 2222333445
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 035749 349 ALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGC 385 (405)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (405)
++...|+.++|+..+-..... +...|..-+..|
T Consensus 84 ~L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~y 116 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALAE----TLPRYRRAIRFY 116 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 677889999999888766542 333455555444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00099 Score=46.01 Aligned_cols=96 Identities=14% Similarity=0.071 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---ChHHHH
Q 035749 23 STLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP---DVVTYN 99 (405)
Q Consensus 23 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 99 (405)
..+..++-..|+.++|+.+|++.+..+.. .......+..+...+...|++++|+.++++..... |. +.....
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~----~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~ 79 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLS----GADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRV 79 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC----chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHH
Confidence 34556667788888888888888876521 11124466777778888888888888888777652 21 223333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
.+..++...|+.++|++++-....
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344556677888888877766553
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00046 Score=53.30 Aligned_cols=148 Identities=8% Similarity=-0.024 Sum_probs=104.0
Q ss_pred CChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHH
Q 035749 74 GFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLL 153 (405)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 153 (405)
...+..+++|++=. ...-+.++.++...+.+.-...++.+.++...+.++.....+++.-.+.|+.+.|...|
T Consensus 163 ~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf 235 (366)
T KOG2796|consen 163 LAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYF 235 (366)
T ss_pred cchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 33456666665533 24456677777778888888888888888776777788888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHH-----HHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 035749 154 ELMIQIGVRPNAFVYN-----TLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (405)
Q Consensus 154 ~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (405)
++..+..-..+...++ .....+.-.+++..|...+.++...+ +.++...|.-.-+..-.|+..+|++.++.+..
T Consensus 236 ~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 236 QDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred HHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8776553344433333 33445666778888888888887765 45566655555555556888889999988887
Q ss_pred C
Q 035749 229 K 229 (405)
Q Consensus 229 ~ 229 (405)
.
T Consensus 315 ~ 315 (366)
T KOG2796|consen 315 Q 315 (366)
T ss_pred c
Confidence 6
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00083 Score=53.35 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=87.1
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCCCCHHHH
Q 035749 92 NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN---GKMEEASQLLELMIQIGVRPNAFVY 168 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (405)
|-|...|..|...|...|+...|...|.+..+.. .++...+..+..++... ....++..++++++..+ +.+..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 6799999999999999999999999999998873 33677777777765543 24678999999999886 6678888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcC
Q 035749 169 NTLMDGFCLTGRVNRAKELFVSMESMG 195 (405)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (405)
..+...+...|++.+|...++.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 888899999999999999999999885
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00083 Score=59.66 Aligned_cols=143 Identities=11% Similarity=0.056 Sum_probs=88.9
Q ss_pred CCCchhhHHHHHHHHHc-----cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC--------CChHHHHHHHHHHH
Q 035749 231 IKPTVVTYNTLFIGLFE-----IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN--------GYIVEALELFRTLR 297 (405)
Q Consensus 231 ~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 297 (405)
.+.+...|...+++... .++...|..+|+++++.. |.....+..+..++... .+...+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34566777777766432 223667888888888764 33344455444433221 12233444444433
Q ss_pred hc-CCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 035749 298 IL-KCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCV 376 (405)
Q Consensus 298 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 376 (405)
.. ..+.++..+..+.......|++++|...++++... .|+...|..++..+...|++++|...++++... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 32 12445566777766667778888888888888775 357778888888888888888888888888774 44444
Q ss_pred HH
Q 035749 377 AF 378 (405)
Q Consensus 377 ~~ 378 (405)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 43
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=45.48 Aligned_cols=52 Identities=25% Similarity=0.186 Sum_probs=34.4
Q ss_pred cCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC
Q 035749 282 KNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG 334 (405)
Q Consensus 282 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (405)
..|++++|..+|+.+.... |.+..+...++.+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567777777777766654 446666666777777777777777777776654
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.01 Score=49.04 Aligned_cols=289 Identities=15% Similarity=0.106 Sum_probs=179.3
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH--HHcCCCHHHHHHHHHHHHHcCCCCCHHH--HHH
Q 035749 97 TYNSVIRGFC--YANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE--LCKNGKMEEASQLLELMIQIGVRPNAFV--YNT 170 (405)
Q Consensus 97 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 170 (405)
-|..|-.+++ ..|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 4555555444 456777777776665432 23344444444443 34579999999999999753 22222 222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCC-CCCchhh--HHHHHHHHH-
Q 035749 171 LMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IKPTVVT--YNTLFIGLF- 246 (405)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~- 246 (405)
|.-...+.|+.+.|..+-+...... +.-...+...+...+..|+|+.|+++++.-.... +.++..- -..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 3333457788999998888877654 4456778888999999999999999998876542 2333321 112222111
Q ss_pred --ccccHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH
Q 035749 247 --EIHQVERAFKLFDEMQRHGVAADT-WAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKI 323 (405)
Q Consensus 247 --~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 323 (405)
-..+...|...-.+..+. .|+. ..--....++.+.|+..++-.+++.+-+.. |.+.+.. +..+.+.|+...
T Consensus 239 s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gdta~ 312 (531)
T COG3898 239 SLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGDTAL 312 (531)
T ss_pred HHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCCcHH
Confidence 123455565555555543 3442 223344567888999999999999998774 4444332 223445555221
Q ss_pred H--H--HHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-ccCchhHHHHHH
Q 035749 324 A--W--ELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCI-RNNETSKVVELL 398 (405)
Q Consensus 324 a--~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~ 398 (405)
. . +-+..|..+ +......+..+-...|++..|..--+.... ..|....|..|...-. ..|+-.+++.++
T Consensus 313 dRlkRa~~L~slk~n----naes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 313 DRLKRAKKLESLKPN----NAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred HHHHHHHHHHhcCcc----chHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 1 1 122333322 566667777888888999988887776665 4778888888776655 449988888888
Q ss_pred HHhh
Q 035749 399 HRMD 402 (405)
Q Consensus 399 ~~~~ 402 (405)
-+.+
T Consensus 387 Aqav 390 (531)
T COG3898 387 AQAV 390 (531)
T ss_pred HHHh
Confidence 7654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0002 Score=58.95 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=46.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccH----hhHHHHHHHHHcCCCHHHHHHHHHHHH--H--cCCC-CCHHHHHHHHHH
Q 035749 104 GFCYANDSNEAKRLFIEMMDQGVQPNV----VTFSVIMDELCKNGKMEEASQLLELMI--Q--IGVR-PNAFVYNTLMDG 174 (405)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~~ 174 (405)
-+++.|+.......|+..++.|-. |. ..|..+..+|.-.+++++|+++...=+ . .|-+ -...+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 466777888888888887776643 32 234555556666667777776543211 1 1100 122233445555
Q ss_pred HHccCCHHHHHHHH
Q 035749 175 FCLTGRVNRAKELF 188 (405)
Q Consensus 175 ~~~~~~~~~a~~~~ 188 (405)
+--.|.+++|.-+-
T Consensus 105 lKv~G~fdeA~~cc 118 (639)
T KOG1130|consen 105 LKVKGAFDEALTCC 118 (639)
T ss_pred hhhhcccchHHHHH
Confidence 55566666666543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0051 Score=45.15 Aligned_cols=152 Identities=11% Similarity=0.015 Sum_probs=93.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHH
Q 035749 70 LCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEA 149 (405)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 149 (405)
..+.=+++...+-..+-.. +.|++.....|..+..+.|+..+|...|++...--..-|......+.++....+++..|
T Consensus 66 ~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 66 LQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 3333444444433333222 25666666677777777777777777777776654555666667777777777777777
Q ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHH
Q 035749 150 SQLLELMIQIGV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSE 225 (405)
Q Consensus 150 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (405)
...++++.+.+. ..++.....+.+.+...|++.+|+.-|+...+. -|+...-......+.+.|+.+++..-+..
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 777777766531 112334445667777777777777777777765 45555544455556666666555444433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.8e-05 Score=39.21 Aligned_cols=29 Identities=34% Similarity=0.756 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEAKG 370 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 370 (405)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666654
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=8e-05 Score=46.21 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-chhHHHHHHHHhhh
Q 035749 340 VVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNN-ETSKVVELLHRMDE 403 (405)
Q Consensus 340 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 403 (405)
...|..++..+...|++++|+..|++.++.+ +.+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455556666666666666666666666542 224455555556666666 56666666665544
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00042 Score=46.03 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccc-cccHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCC
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVC-KPDAVIYTTIIDGLCKEG--------FVDKAKELLLQMKDKNIN 92 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~ 92 (405)
....|..+...+++...-.+|+.+.+.+ + -|+..+|+.++.+.++.. +.-..+.+|+.|...+++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~------i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lK 101 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNG------ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLK 101 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcC------CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccC
Confidence 3456777888899999999999999988 6 789999999999888653 345678899999999999
Q ss_pred CChHHHHHHHHHHHh
Q 035749 93 PDVVTYNSVIRGFCY 107 (405)
Q Consensus 93 ~~~~~~~~l~~~~~~ 107 (405)
|+..+|+.++..+.+
T Consensus 102 P~~etYnivl~~Llk 116 (120)
T PF08579_consen 102 PNDETYNIVLGSLLK 116 (120)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999999988754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.6e-05 Score=45.38 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=41.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 311 LIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 311 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
++..+...|++++|...|+.+.+.. +-+...+..+..++...|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566777788888888888777764 226677777777777888888888888777764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.021 Score=51.28 Aligned_cols=342 Identities=13% Similarity=0.100 Sum_probs=175.6
Q ss_pred hcCCCCChhHHH-----HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCCh--HHHHHHHH
Q 035749 12 AFGCEPNVITYS-----TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFV--DKAKELLL 84 (405)
Q Consensus 12 ~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~ 84 (405)
..|++.+-.-|. .+|.-+...+.+..|+++-..+.... ..+..+|......+.+..+. +++++.++
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-------~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~ 497 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE-------SQGDRVLLEWARRKIKQSDKMDEEVLDKID 497 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc-------ccccHHHHHHHHHHHhccCccchHHHHHHH
Confidence 457777666554 44667778889999999888875432 12257788888777776432 23333333
Q ss_pred HHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 85 QMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ----PNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
+=..... .+...|..+.+-....|+++-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+.+.-
T Consensus 498 ~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~ 576 (829)
T KOG2280|consen 498 EKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL 576 (829)
T ss_pred HHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 2222211 34566778888888899999888877642221100 011122233334444555555555444443320
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHH-HHHHh----CCCCCch
Q 035749 161 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLY-SEMLS----KGIKPTV 235 (405)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~----~~~~~~~ 235 (405)
+...+ .....+...|..+|.+..+.. +.. .+-..|....+...+-.+. +.... .+..|+.
T Consensus 577 ---~~s~l------~~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l 641 (829)
T KOG2280|consen 577 ---NRSSL------FMTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL 641 (829)
T ss_pred ---HHHHH------HHHHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH
Confidence 11111 111223344555555544321 110 1111222222222211111 11000 1112222
Q ss_pred hhHHHHHHHHHcccc----------HHHHHHHHHHHHH-cCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCcc
Q 035749 236 VTYNTLFIGLFEIHQ----------VERAFKLFDEMQR-HGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELD 304 (405)
Q Consensus 236 ~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 304 (405)
......+.+... ..+-+.+.+.+.. .+.....-+.+--+.-+...|+..+|.++-.+.+ -||
T Consensus 642 ---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipd 714 (829)
T KOG2280|consen 642 ---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPD 714 (829)
T ss_pred ---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Ccc
Confidence 222233332222 1111222222221 1222333344555556666788888877776655 577
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 035749 305 IRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLG 384 (405)
Q Consensus 305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (405)
-..|..-+.+++..+++++-.++-+... ++.-|.....+|.+.|+.++|.+++-+.-.. .....+
T Consensus 715 Kr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~a 779 (829)
T KOG2280|consen 715 KRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKA 779 (829)
T ss_pred hhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHH
Confidence 7777777888888888887777655443 2445666777888888888888877654321 145667
Q ss_pred HHccCchhHHHHHH
Q 035749 385 CIRNNETSKVVELL 398 (405)
Q Consensus 385 ~~~~g~~~~a~~~~ 398 (405)
|.+.|++.+|.++-
T Consensus 780 y~~~~~~~eAad~A 793 (829)
T KOG2280|consen 780 YLRVGDVKEAADLA 793 (829)
T ss_pred HHHhccHHHHHHHH
Confidence 77777777776654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.1e-05 Score=39.04 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=27.7
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcC
Q 035749 377 AFNTLMLGCIRNNETSKVVELLHRMDERN 405 (405)
Q Consensus 377 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 405 (405)
+|+.++.+|.+.|++++|.+++++|.++|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 79999999999999999999999999876
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0034 Score=45.83 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=19.4
Q ss_pred hHHHHHH---HHHHhcCchHHHHHHHHHHHcCC
Q 035749 20 ITYSTLI---NGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 20 ~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
..|..++ ......++.+.+...++++....
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly 36 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALY 36 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3444443 33456788899999999988765
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0014 Score=52.67 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCChHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKN--INPDVVTYN 99 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 99 (405)
|...+....+.|++++|+..|+.+++..+.. +-.+.++..+...|...|++++|...|+.+.+.. .+.....+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s----~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDS----TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4444444456677777777777777765210 1113566777777777777777777777776542 112244455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
.++.++...|+.++|..+|+.+++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566666777777777777777665
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.019 Score=47.57 Aligned_cols=279 Identities=10% Similarity=0.066 Sum_probs=129.4
Q ss_pred cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCChHHHHH----HHHHH
Q 035749 32 TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDG--LCKEGFVDKAKELLLQMKDKNINPDVVTYNS----VIRGF 105 (405)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~ 105 (405)
.||-..|.++-.+.... +..|...+..++.+ -.-.|+++.|.+-|+.|.. |+.+-.. |.-..
T Consensus 97 AGda~lARkmt~~~~~l-------lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleA 164 (531)
T COG3898 97 AGDASLARKMTARASKL-------LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEA 164 (531)
T ss_pred cCchHHHHHHHHHHHhh-------hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHH
Confidence 45555565555554322 22333333333332 2335677777777776664 2232222 22222
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHH---HHccC
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG-VRPNAFV--YNTLMDG---FCLTG 179 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~---~~~~~ 179 (405)
-+.|+.+.|.++-+..-..-.. -...+...+...+..|+|+.|+++++.-.+.. +.++..- -..|+.+ -.-..
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 3556666666665555443222 34555666666666777777777666554432 2222211 1111111 01112
Q ss_pred CHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHH
Q 035749 180 RVNRAKELFVSMESMGCKHNVF-SYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLF 258 (405)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (405)
+...|...-.+..+. .|+.. .--.-..++.+.|+..++-.+++.+-+....|+.. .+....+.|+ .+..-+
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRl 315 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRL 315 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHH
Confidence 344444444444333 23321 22233455666666666666666666654333321 1112233333 222222
Q ss_pred HHHHHc-CC-CccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc-CCHHHHHHHHhhccC
Q 035749 259 DEMQRH-GV-AADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKS-GRLKIAWELFHSLPR 333 (405)
Q Consensus 259 ~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 333 (405)
++..+. .. +.+......+..+-...|++..|..--+..... .|....|..|...-... |+-.++...+.+..+
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 222110 01 223444455555556666666665555554433 45555555555554333 666666666655544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.4e-05 Score=47.44 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKD 88 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (405)
..+|+.+...|...|++++|++.|+++++.....+...+....++..+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3578999999999999999999999988652111111112366889999999999999999999988754
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.024 Score=47.61 Aligned_cols=168 Identities=13% Similarity=0.009 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCccHhhHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQG---VQPNVVTFSVIMDELCK---NGKMEEASQLLELMIQIGVRPNAFVYN 169 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (405)
.+...++-+|....+++..+++.+.+.... +.-+...-...+-++.+ .|+.++|.+++..+......+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 333445555666666666666666665431 11122222233344445 666777777766654444456666666
Q ss_pred HHHHHHHc---------cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh----HHHHHHH---HH-HHhCC--
Q 035749 170 TLMDGFCL---------TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEI----EGALSLY---SE-MLSKG-- 230 (405)
Q Consensus 170 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~---~~-~~~~~-- 230 (405)
.+.+.|-. ....++|...|.+.-+.. ++...=-.++..+.-.|.. .+..++- .. +.+.|
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 55554421 123667777777665542 3332222222222222221 1222222 11 11222
Q ss_pred -CCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC
Q 035749 231 -IKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 231 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (405)
-..+.-.+..++.++.-.|+.++|.+..++|.+..
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 23344555667777788888888888888888763
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00093 Score=53.63 Aligned_cols=98 Identities=13% Similarity=0.002 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHhhccCCCc--CccHHHHHH
Q 035749 271 WAYRTFIDGLCKNGYIVEALELFRTLRILKCELD---IRSYSCLIDGLCKSGRLKIAWELFHSLPRGVL--IADVVTYNI 345 (405)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 345 (405)
..|...+....+.|++++|...|+.+.... |-+ ..++..++.+|...|++++|...|+.+.+... +.....+..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 345555555566799999999999998764 222 35788889999999999999999998875421 113455666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 346 MIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
++.++...|++++|..+|+++++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 677788899999999999999885
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.016 Score=44.92 Aligned_cols=56 Identities=20% Similarity=0.135 Sum_probs=22.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 035749 138 DELCKNGKMEEASQLLELMIQIG--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (405)
..+...|++.+|...|+.+...- .+--......++.++.+.|+++.|...++...+
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455555555555444431 011122233344444455555555555554444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0022 Score=48.46 Aligned_cols=100 Identities=21% Similarity=0.249 Sum_probs=57.1
Q ss_pred CccHHHHHHHHHHHhc-----CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHH
Q 035749 267 AADTWAYRTFIDGLCK-----NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVV 341 (405)
Q Consensus 267 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 341 (405)
..+..+|..+++.+.+ .|..+=....+..|.+.|+.-|..+|+.|+..+=+ |.+- |. .
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-N 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-c
Confidence 3466667777766653 35566666666777777777777777777665432 1111 10 0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGC 385 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (405)
.+..+..- .-.+-+-|++++++|...|+-||..++..++..+
T Consensus 107 ~fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iF 148 (228)
T PF06239_consen 107 FFQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIF 148 (228)
T ss_pred HHHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Confidence 01111100 1123355677777777777777777777777766
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.045 Score=49.04 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhccCC-CcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 304 DIRSYSCLIDGLCKSGRLKIAWELFHSLPRG-VLIADVVTYNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
....+..+++-....|..+.|+..--.+.+. .+.|....|..+.-+-+....+...-+.|-++.
T Consensus 1020 EAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1020 EAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 3445666666677788888887755444432 245677888877766665555554444444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0022 Score=46.38 Aligned_cols=118 Identities=15% Similarity=0.037 Sum_probs=83.7
Q ss_pred cHHHHHHHHHHHHHcCCCc------cHHH---HHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 035749 250 QVERAFKLFDEMQRHGVAA------DTWA---YRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR 320 (405)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~------~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (405)
+.++..+.+..++..|..+ +..+ +....--+...|++++|..+|+-+...+ +.+..-+..|+.++-..++
T Consensus 8 ~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~ 86 (165)
T PRK15331 8 SEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQ 86 (165)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHH
Confidence 4445555555555544322 1222 2233444567899999999999988766 5677778889999999999
Q ss_pred HHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 321 LKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
+++|...|........ -|+..+-....++...|+.+.|+..|....+.
T Consensus 87 y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 87 FQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 9999999877544322 24455666888999999999999999998874
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0076 Score=43.67 Aligned_cols=118 Identities=10% Similarity=-0.036 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHHhCCCCC------chhhH---HHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 035749 215 EIEGALSLYSEMLSKGIKP------TVVTY---NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (405)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~------~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 285 (405)
+.++..+.+.+++..|..+ +..+. -....-+...|++++|..+|.-+...+ +.+..-+..+..++-..++
T Consensus 8 ~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~ 86 (165)
T PRK15331 8 SEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQ 86 (165)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHH
Confidence 4445555555556654322 11122 223334568899999999999888765 5567777788888888999
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC
Q 035749 286 IVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG 334 (405)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (405)
+++|...|......+ ..|+..+...+.++...|+.+.|...|..+.+.
T Consensus 87 y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 87 FQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 999999999887665 456666778899999999999999999988773
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00075 Score=42.31 Aligned_cols=56 Identities=16% Similarity=0.095 Sum_probs=39.1
Q ss_pred HHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 27 NGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
..|.+.+++++|++.++.+++.+ |.++..+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-------PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777777777764 456666777777777777777777777777665
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0023 Score=48.36 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh----------------cCChHHHHHHHHHHHhCCCCCchhhHHHHH
Q 035749 179 GRVNRAKELFVSMESMGCKHNVFSYSILINGYCK----------------NKEIEGALSLYSEMLSKGIKPTVVTYNTLF 242 (405)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 242 (405)
|..+-....++.|.+.|+..|..+|+.|+..+=+ -.+-+-|++++++|...|+-||..++..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3344444444445555555555555555444322 122344556666666666666666666666
Q ss_pred HHHHccc
Q 035749 243 IGLFEIH 249 (405)
Q Consensus 243 ~~~~~~~ 249 (405)
..+.+.+
T Consensus 146 ~iFG~~s 152 (228)
T PF06239_consen 146 NIFGRKS 152 (228)
T ss_pred HHhcccc
Confidence 6555444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.049 Score=46.20 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHH----HHHHh---cCCHHHHHHHHhhccCCCcCc----cHHHHHHHHH--HHHc
Q 035749 286 IVEALELFRTLRILKCELDIRSYSCLI----DGLCK---SGRLKIAWELFHSLPRGVLIA----DVVTYNIMIH--ALCA 352 (405)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~--~~~~ 352 (405)
-++|+.+++.+.+.. +-|...-+.+. .+|.. ...+..-..+-+-+.+.|+.| +...-|-|.. .+..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 667777777776543 33333322222 12221 122333333333334444443 2333344433 3456
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 353 DGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 353 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
+|++.++.-.-.-+.+ +.|++.+|..++.+.....++++|..++..+.
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 7888877766555555 57788888888888888888888888877653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.042 Score=46.20 Aligned_cols=166 Identities=13% Similarity=0.023 Sum_probs=102.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHHhCC---CCCchhhHHHHHHHHHc---cccHHHHHHHHHHHHHcCCCccHHHHHH
Q 035749 202 SYSILINGYCKNKEIEGALSLYSEMLSKG---IKPTVVTYNTLFIGLFE---IHQVERAFKLFDEMQRHGVAADTWAYRT 275 (405)
Q Consensus 202 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 275 (405)
+...++-+|....+++..+++.+.+.... +.-....-.....++.+ .|+.++|..++..+......+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455557888899999999999987752 11122222234445566 8899999999998666556788889988
Q ss_pred HHHHHhc---------CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC-HH---HHHHHH---hh-ccCCCcC-
Q 035749 276 FIDGLCK---------NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR-LK---IAWELF---HS-LPRGVLI- 337 (405)
Q Consensus 276 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~-~~~~~~~- 337 (405)
+...|-. ....++|...|.+.-+.. |+...--.++..+...|. ++ +..++- .. +.+.|..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 8877642 224677788887776553 444433333333444443 22 233333 11 1122221
Q ss_pred --ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 338 --ADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 338 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
.+--.+..++.++.-.|++++|.+..++|...
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 23333456677788889999999999998876
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.066 Score=47.11 Aligned_cols=369 Identities=10% Similarity=0.006 Sum_probs=201.4
Q ss_pred HhHHHHHHhhcCCCCCh-hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh-cCChHHHH
Q 035749 3 AAALFTKLKAFGCEPNV-ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK-EGFVDKAK 80 (405)
Q Consensus 3 A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~ 80 (405)
+..++..++.. .|-. .-|......-.+.|..+.+.++|++.++. ++.+...|......+.. .|+.+...
T Consensus 64 ~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-------ip~SvdlW~~Y~~f~~n~~~d~~~lr 134 (577)
T KOG1258|consen 64 LREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-------IPLSVDLWLSYLAFLKNNNGDPETLR 134 (577)
T ss_pred HHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHhccCCCHHHHH
Confidence 34555555544 3443 36777777778888888888888888875 46677777776665554 57777788
Q ss_pred HHHHHHHhC-CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH---Hc------CCCHHHH
Q 035749 81 ELLLQMKDK-NI-NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL---CK------NGKMEEA 149 (405)
Q Consensus 81 ~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~------~~~~~~a 149 (405)
+.|+..... |. -.+...|...|..-..++++.....+|++.++.. ...++....-| .+ ....+++
T Consensus 135 ~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~ 210 (577)
T KOG1258|consen 135 DLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDEL 210 (577)
T ss_pred HHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHH
Confidence 888877654 21 1245667777777777888888888888887641 11111111111 11 1123333
Q ss_pred HHHHHHHHH--------------------cCCCCCHH--HHHHHHH-------HHHccCCHHHHHHHHHHHHhcC---C-
Q 035749 150 SQLLELMIQ--------------------IGVRPNAF--VYNTLMD-------GFCLTGRVNRAKELFVSMESMG---C- 196 (405)
Q Consensus 150 ~~~~~~~~~--------------------~~~~~~~~--~~~~l~~-------~~~~~~~~~~a~~~~~~~~~~~---~- 196 (405)
.++-..... .+.+.+.. ....+.. ++...-...+....++.-.... +
T Consensus 211 ~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvk 290 (577)
T KOG1258|consen 211 IQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVK 290 (577)
T ss_pred HHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccC
Confidence 333222221 00000000 0011111 1111111222222222222211 1
Q ss_pred ---CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHH
Q 035749 197 ---KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAY 273 (405)
Q Consensus 197 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 273 (405)
+++...|...+..-...|+.+.+.-+|+...-.--.-+ ..|-..+.-....|+.+-|..++....+-..+..+.+-
T Consensus 291 pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~-efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~ 369 (577)
T KOG1258|consen 291 PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD-EFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIH 369 (577)
T ss_pred cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHH
Confidence 12345677777777888999998888888764210111 12222333333448888888887776665433333322
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHH---HHHhhccCCCcCccHHHHHHHHH--
Q 035749 274 RTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAW---ELFHSLPRGVLIADVVTYNIMIH-- 348 (405)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~-- 348 (405)
-.-.......|++..|..+++.+...- +--..+-..-+....+.|+.+.+. .++........ +......+..
T Consensus 370 L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~ 446 (577)
T KOG1258|consen 370 LLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKF 446 (577)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHH
Confidence 222333445689999999999988764 323333333344556677777776 44443333211 1122222221
Q ss_pred ---HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 035749 349 ---ALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNN 389 (405)
Q Consensus 349 ---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (405)
.+.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 447 ~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 447 ARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 123467888999999999887 6777777877777665544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.032 Score=49.44 Aligned_cols=54 Identities=13% Similarity=-0.009 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035749 236 VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRI 298 (405)
Q Consensus 236 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 298 (405)
.+...+...+-+...+..|.++|..|-.. ..+++.....++|++|..+-+...+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 33444444444555566666666655321 2456666777778777777665543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0019 Score=47.11 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCccHhhHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMD-----QGVQPNVVTFS 134 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 134 (405)
..+...++..+...|++++|..+.+.+.... |.+...|..++.++...|+...|.+.|+.+.+ .|+.|+..+-.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4577788888889999999999999998876 78899999999999999999999999988754 48888876643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00041 Score=44.25 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEAK--GVA---PD-CVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
+++.+...|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|.+++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455555555555555555544422 001 11 223444455555555555555555544
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.039 Score=48.94 Aligned_cols=90 Identities=18% Similarity=0.124 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHH-------
Q 035749 269 DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVV------- 341 (405)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 341 (405)
+..++..+..-+.+...+..|-++|..+-.. ..+++.....+++++|..+-++..+. .||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 3445555555666677778888888876432 34566778889999999988887763 33321
Q ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 342 ----TYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 342 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
-|...-.+|.+.|+..+|.++++++...
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2344556777888888888888887654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0026 Score=39.84 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=18.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 035749 142 KNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 192 (405)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (405)
+.+++++|.++++.+...+ |.+...+.....++...|++++|...++...
T Consensus 7 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred hCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333333333333333332 2233333333333333333333333333333
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.028 Score=49.81 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=92.2
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 23 STLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK----EGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 23 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
..++...+=.||-+.+++.+.+..+..+-.+.....-.-.|+..+..++. ....+.|.++++.+.++ -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 44555666778888999998888765421110000011233444433333 34566778888877766 3444444
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHHHCC---CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-H
Q 035749 99 N-SVIRGFCYANDSNEAKRLFIEMMDQG---VQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLM-D 173 (405)
Q Consensus 99 ~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~ 173 (405)
. .-.+.+...|++++|++.|+...... .+.....+-.++.++.-.++|++|...+..+.+.+ ..+..+|..+. .
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 3 33455667788888888888655321 11122233445555666777777777777777654 33344443332 3
Q ss_pred HHHccCCH-------HHHHHHHHHHH
Q 035749 174 GFCLTGRV-------NRAKELFVSME 192 (405)
Q Consensus 174 ~~~~~~~~-------~~a~~~~~~~~ 192 (405)
++...++. ++|.+++.++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 44455555 55555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0075 Score=51.34 Aligned_cols=67 Identities=18% Similarity=0.014 Sum_probs=50.9
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccH---HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDA---VIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
+.+...|+.+..+|...|++++|+..|+++++.+ |.+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-------Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-------PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456678888888888888888888888888765 2223 35888888888888888888888888764
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.07 Score=42.69 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=58.1
Q ss_pred HHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 035749 28 GLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY 107 (405)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (405)
.....|++.+|..+|..+.+.. +.+...-..+++++...|+.+.|..++..+....-.........-+..+.+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 4455666666666666666654 334555666666666666666666666665443111111111112222333
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 035749 108 ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ 158 (405)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (405)
.....+...+-..+-.. +-|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 216 aa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 216 AAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333322222222221 11444444555555556666665555544443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.066 Score=41.96 Aligned_cols=131 Identities=13% Similarity=0.028 Sum_probs=91.6
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCc-----cHHHHHHHH
Q 035749 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCEL-----DIRSYSCLI 312 (405)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~ 312 (405)
.+.++..+.-.+.+.-....+.++++...+.++.....+++.-.+.||.+.|...|++..+..-.. ...+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345556666677788888888888877666777788888888888888888888888665432222 233333444
Q ss_pred HHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 313 DGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
..|.-.+++.+|...+.++..... .++...|.-.-+..-.|+..+|++.++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456667788888888887776532 25555666666666788888888888888875
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.11 Score=43.22 Aligned_cols=105 Identities=20% Similarity=0.158 Sum_probs=47.8
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 035749 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKS 318 (405)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (405)
+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-..+... . -++.-|..++.+|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHC
Confidence 333444444555544444433331 34555555555555555555554443221 1 1122344445555555
Q ss_pred CCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHH
Q 035749 319 GRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLF 363 (405)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (405)
|+..+|..+..++. +..-+..|.+.|++.+|.+.-
T Consensus 251 ~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHH
Confidence 55555555554421 122334445555555555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.1 Score=46.35 Aligned_cols=161 Identities=13% Similarity=0.018 Sum_probs=88.7
Q ss_pred HHHHHHHHccccHHHHHHHHHHHHHcCCCccHH------HHHHHHHHHh----cCCChHHHHHHHHHHHhcCCCccHHH-
Q 035749 239 NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTW------AYRTFIDGLC----KNGYIVEALELFRTLRILKCELDIRS- 307 (405)
Q Consensus 239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~- 307 (405)
..++....-.||-+.+++.+....+.+---.+. .|..++..++ ...+.+.|.+++..+... -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 344555555566666666666655432111111 1111222221 245667777777777765 244333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccCCC---cCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 035749 308 YSCLIDGLCKSGRLKIAWELFHSLPRGV---LIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLML- 383 (405)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 383 (405)
...-.+.+...|++++|.+.|++..... .......+--++.++...++|++|...|..+.+.. ..+..+|..+.-
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 3344566677788888888887654311 11123344456666777788888888888887752 334555555443
Q ss_pred HHHccCch-------hHHHHHHHHhh
Q 035749 384 GCIRNNET-------SKVVELLHRMD 402 (405)
Q Consensus 384 ~~~~~g~~-------~~a~~~~~~~~ 402 (405)
++...|+. ++|.+++.+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33456666 66666666553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.14 Score=43.52 Aligned_cols=340 Identities=13% Similarity=0.134 Sum_probs=188.2
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccc----ccHHHHHHHHHHHHhcC--------C-------hHHHHHHH
Q 035749 23 STLINGLCRTGHTIVALNLFEEMINGNGEFGVVCK----PDAVIYTTIIDGLCKEG--------F-------VDKAKELL 83 (405)
Q Consensus 23 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~--------~-------~~~a~~~~ 83 (405)
+..++.+...|++.+++.+++++...- .+ -+.++|+.++-.+.++- . ++.++-..
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~l------lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~ 205 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERL------LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYL 205 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHH------hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 455778889999999999999987664 33 57888988766655431 1 11222222
Q ss_pred HHHHhC------CCCCChHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCccHhhH-HHHHHHHHcCCCHHHHHHHHH
Q 035749 84 LQMKDK------NINPDVVTYNSVIRGFCYA--NDSNEAKRLFIEMMDQGVQPNVVTF-SVIMDELCKNGKMEEASQLLE 154 (405)
Q Consensus 84 ~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~ 154 (405)
.++... .+-|.......++....-. .+..--.++++.....-+.|+.... ..+...+.+ +.+++..+.+
T Consensus 206 kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce 283 (549)
T PF07079_consen 206 KKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCE 283 (549)
T ss_pred HHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHH
Confidence 222211 1122222233333222211 1112222333333333344543322 223333333 6666666666
Q ss_pred HHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHH-------HHHHHHhh----cCChHHH
Q 035749 155 LMIQIGVRP----NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYS-------ILINGYCK----NKEIEGA 219 (405)
Q Consensus 155 ~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~----~~~~~~a 219 (405)
.+....+.+ -..+|..++....+.++...|.+.+.-+.... |+...-. .+-+..+. .-+..+=
T Consensus 284 ~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~y 361 (549)
T PF07079_consen 284 AIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDY 361 (549)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHH
Confidence 655442111 24567788888899999999999888877653 3322111 12222221 1123334
Q ss_pred HHHHHHHHhCCCCCchhhHHHHH---HHHHcccc-HHHHHHHHHHHHHcCCCccHHHHHHHH----HHHh---cCCChHH
Q 035749 220 LSLYSEMLSKGIKPTVVTYNTLF---IGLFEIHQ-VERAFKLFDEMQRHGVAADTWAYRTFI----DGLC---KNGYIVE 288 (405)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~---~~~~~~~ 288 (405)
+.+|+.+...++... .....++ .-+-+.|. -++|+.+++.+++-. +-|...-+.+. ..|. ....+.+
T Consensus 362 L~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~r 439 (549)
T PF07079_consen 362 LNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPR 439 (549)
T ss_pred HHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 555655555433211 1112222 23344555 889999999888742 33333322222 2332 2344566
Q ss_pred HHHHHHHHHhcCCCcc----HHHHHHHHHH--HHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHH
Q 035749 289 ALELFRTLRILKCELD----IRSYSCLIDG--LCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDL 362 (405)
Q Consensus 289 a~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 362 (405)
-..+-+-+.+.|++|- ...-+.+..+ +...|++.++.-.-.-+.+ +.|++.+|..++-+.....++++|..+
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6666666677776653 3334444433 5678999998765544444 578999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHH
Q 035749 363 FLDMEAKGVAPDCVAFNTL 381 (405)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~l 381 (405)
+.. ++|+..++.+-
T Consensus 518 l~~-----LP~n~~~~dsk 531 (549)
T PF07079_consen 518 LQK-----LPPNERMRDSK 531 (549)
T ss_pred HHh-----CCCchhhHHHH
Confidence 876 46677766543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.027 Score=39.45 Aligned_cols=89 Identities=12% Similarity=0.059 Sum_probs=60.6
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCC---------CCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNG---------EFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKD 88 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (405)
|..++..++.++++.|+.+....+.+..-..+. ..+....|+..+..+++.+++..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456789999999999999999999987654331 11222456666777777777777777777777766654
Q ss_pred C-CCCCChHHHHHHHHHHH
Q 035749 89 K-NINPDVVTYNSVIRGFC 106 (405)
Q Consensus 89 ~-~~~~~~~~~~~l~~~~~ 106 (405)
. +++.+..+|..|+.-..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 3 45555666666665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.067 Score=42.80 Aligned_cols=154 Identities=16% Similarity=0.084 Sum_probs=99.8
Q ss_pred HHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRL 321 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (405)
.......|++..|...|....... +-+......+..+|...|+.+.|..++..+....-.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345678899999999999988764 4456777788899999999999999998875432112222222223344444444
Q ss_pred HHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCchhHHHHHH
Q 035749 322 KIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGV-APDCVAFNTLMLGCIRNNETSKVVELL 398 (405)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 398 (405)
.+...+-.+.-.. +.|...-..+...+...|+.++|.+.+-.++.++. .-|...-..++..+.-.|..+.+...+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4333333333332 22667777788889999999999988877766522 224555667777777777544444333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.016 Score=45.68 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC-c-cHHHHHHHH
Q 035749 272 AYRTFIDGLCKNGYIVEALELFRTLRILKC--ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI-A-DVVTYNIMI 347 (405)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~ 347 (405)
.|+.-+.. .+.|++..|...|...++... .-....+..|+.++...|++++|..+|..+.+.... | -+.++--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45444443 345667777777777766531 123345666777777777777777777666543211 1 235566666
Q ss_pred HHHHcCCCHHHHHHHHHHHHhC
Q 035749 348 HALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 348 ~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777765
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.093 Score=45.09 Aligned_cols=81 Identities=15% Similarity=-0.011 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 035749 36 IVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAK 115 (405)
Q Consensus 36 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 115 (405)
.+|.++-+++.+.+ +.|+.+...+..+..-.++++.|..+|++....+ |....+|......+.-.|+.++|.
T Consensus 321 ~~a~~~A~rAveld-------~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 321 QKALELLDYVSDIT-------TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred HHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 35555666666554 4455555555555555555666666666665543 333444444444455566666666
Q ss_pred HHHHHHHHC
Q 035749 116 RLFIEMMDQ 124 (405)
Q Consensus 116 ~~~~~~~~~ 124 (405)
+.+++..+.
T Consensus 393 ~~i~~alrL 401 (458)
T PRK11906 393 ICIDKSLQL 401 (458)
T ss_pred HHHHHHhcc
Confidence 666665443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.027 Score=46.96 Aligned_cols=92 Identities=14% Similarity=0.034 Sum_probs=43.4
Q ss_pred HHHHhhcCChHHHHHHHHHHHhC-----CCCC---------chhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHH
Q 035749 207 INGYCKNKEIEGALSLYSEMLSK-----GIKP---------TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWA 272 (405)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 272 (405)
.+.|.+.|++..|...|++++.. +.++ -..++..+..++.+.+++..|+..-...+..+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 34566666777666666665442 0000 11223334444444444444444444444443 344444
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhc
Q 035749 273 YRTFIDGLCKNGYIVEALELFRTLRIL 299 (405)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (405)
+..-..++...|+++.|+..|+++.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 444444444444555555554444443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.19 Score=43.31 Aligned_cols=161 Identities=16% Similarity=0.116 Sum_probs=98.6
Q ss_pred hHH--HHHHHHHHhc-----CchHHHHHHHHHHH---cCCCCCcccccccHHHHHHHHHHHHhc---------CChHHHH
Q 035749 20 ITY--STLINGLCRT-----GHTIVALNLFEEMI---NGNGEFGVVCKPDAVIYTTIIDGLCKE---------GFVDKAK 80 (405)
Q Consensus 20 ~~~--~~l~~~~~~~-----~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~ 80 (405)
..| ..++++.... -..+.|+.+|.++. +.+ |.....|..+..++... ....+|.
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ld-------p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~ 324 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQ-------TLKTECYCLLAECHMSLALHGKSELELAAQKAL 324 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCC-------cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 456 5555555442 23457899999998 544 23355565555544422 2344666
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
++-++..+.+ +.|+.+...+..+....++++.|..+|++....++. ...+|......+.-.|+.++|.+.+++..+..
T Consensus 325 ~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 325 ELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 7777777765 567777777777777778888888888888776433 44555555666667788888888888876653
Q ss_pred C-CCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 035749 161 V-RPNAFVYNTLMDGFCLTGRVNRAKELFVS 190 (405)
Q Consensus 161 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (405)
. +....+....+..|+.. ..+.++++|-+
T Consensus 403 P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 403 PRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 1 11122223334445443 35556665544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.032 Score=46.58 Aligned_cols=91 Identities=10% Similarity=0.043 Sum_probs=54.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----CCC---------ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQ-----GVQ---------PNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVY 168 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (405)
..+.+.|++..|...|++.... +.+ .-..++..++.++.+.+++..|++..++.+..+ +.+....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4466777777777777765432 011 112234555556666666666666666666664 5555555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 169 NTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
..-..++...|+++.|+..|+++.+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 55666666666666666666666665
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.057 Score=46.26 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=57.0
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-h---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD-V---VTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
|.+...++.+..+|.+.|++++|+..|++.++.+ |+ . .+|..+..+|...|+.++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999988874 44 3 35899999999999999999999999875
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0039 Score=34.29 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIID 68 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (405)
.+|..+...|.+.|++++|+++|+++++.. |.++..+..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhhh
Confidence 467889999999999999999999999986 567777776653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.15 Score=40.11 Aligned_cols=62 Identities=13% Similarity=-0.021 Sum_probs=45.8
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
.-+....+.|++++|.+.|+.+..+.+- .+-...+...++.++.+.++++.|+..+++....
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~----s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPF----SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC----CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3444455788899999999888877642 1224567777888888888999998888888766
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.29 Score=43.30 Aligned_cols=134 Identities=11% Similarity=0.085 Sum_probs=96.8
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...|..++.---...+.+.+..+++.++... |.-..-|......-.+.|..+.+..+|++.... ++.+...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-------Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~Svdl 115 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY-------PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDL 115 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC-------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHH
Confidence 34456666665555556677788888887653 445567788888888889999999999998864 6777777
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHC-CCC-ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFC-YANDSNEAKRLFIEMMDQ-GVQ-PNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 98 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
|......+. ..|+.+...+.|+..... |.. .+...|...+..-...+++.....+++++++.
T Consensus 116 W~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 116 WLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 776665444 446777777888887764 211 24456777777778888999999999998875
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.05 Score=43.03 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NPDVVTY 98 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~ 98 (405)
.|+.-+. +...|++..|...|...++..+.. +-.+..+.-|.+++...|++++|..+|..+.+... +--+..+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s----~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNS----TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCC----cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 4554444 346667777777777777776431 22345666677777777777777777777765421 1224566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
.-|..+..+.|+.++|...|+++.+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 66777777777777777777777765
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.068 Score=36.88 Aligned_cols=92 Identities=16% Similarity=0.101 Sum_probs=56.0
Q ss_pred HHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh---HHHHHHHH
Q 035749 27 NGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV---VTYNSVIR 103 (405)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~ 103 (405)
-++...|+.+.|++.|.+.+..- |..+..||.-.+++.-+|+.++|++-+++..+..-+.+. ..|..-..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-------PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 34566677777777777776652 556677777777777777777777777766654222221 22333334
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 035749 104 GFCYANDSNEAKRLFIEMMDQG 125 (405)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~ 125 (405)
.|...|+.+.|..-|+..-+.|
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhC
Confidence 4556666677766666665554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.051 Score=38.08 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHH
Q 035749 269 DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIH 348 (405)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (405)
|..++..++.++++.|+.+....+++..-..+ ++... ..+. .-......|+.....+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~--~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGID--VNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCC--CCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34566667777777777777666665543211 11100 0000 1223345677888888888
Q ss_pred HHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 035749 349 ALCADGKMDKAHDLFLDMEAK-GVAPDCVAFNTLMLGC 385 (405)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~ 385 (405)
+|+..|++..|+++++...+. +++.+..+|..|+.=+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 888888888888888877765 6666677787777533
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.11 Score=36.97 Aligned_cols=67 Identities=9% Similarity=-0.054 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKN 90 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 90 (405)
..+..-.....+.|++++|++.|+.+..+.+. .+-...+-..++.++.+.++++.|...+++.++.+
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~----g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPF----GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34444566667889999999999998887642 12245677788888999999999999999888774
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.1 Score=42.56 Aligned_cols=151 Identities=16% Similarity=0.077 Sum_probs=92.2
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhH----HHHHHHHHccccHH
Q 035749 177 LTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTY----NTLFIGLFEIHQVE 252 (405)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~ 252 (405)
..|+..+|-..++++.+.- |.|..++...-.+|.-.|+.+.-...++++... ..++...| ....-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4566666666666666542 566667776677777777777777777776654 22333222 22333445677778
Q ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHhcCCHHHHHHHHh
Q 035749 253 RAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK---CELDIRSYSCLIDGLCKSGRLKIAWELFH 329 (405)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 329 (405)
+|.+.-++..+.+ +.|..........+...|+..++.++..+-...= .-.-...|-..+-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8887777777665 5566666677777777777777777765543210 00111223344445566677788887776
Q ss_pred h
Q 035749 330 S 330 (405)
Q Consensus 330 ~ 330 (405)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.32 Score=42.22 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 306 RSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI-ADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
.+-..+..++.+.|+.++|.+.++++.+.... ........|+.++...+.+.++..++.+.-+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33344555556666666666666666543211 1233455566666666666666666666543
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.14 Score=44.76 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=65.9
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 035749 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCK 317 (405)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (405)
.+.++.-+.+.|-++.|+.+- .|+. .-+....+.|+++.|.++.+. ..+...|..|......
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 445555555666666666552 2222 123334456666666554332 2345566666666666
Q ss_pred cCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHH
Q 035749 318 SGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVEL 397 (405)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 397 (405)
.|+++-|.+.|++..+ |..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665543 44455555666666665555555554431 23333344444555555555
Q ss_pred HHH
Q 035749 398 LHR 400 (405)
Q Consensus 398 ~~~ 400 (405)
+.+
T Consensus 425 L~~ 427 (443)
T PF04053_consen 425 LIE 427 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.21 Score=38.86 Aligned_cols=28 Identities=7% Similarity=-0.062 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHc
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMIN 47 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 47 (405)
..|..-..+|....++++|..-+.++.+
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4577777788888999999888888764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.18 Score=44.21 Aligned_cols=156 Identities=16% Similarity=0.131 Sum_probs=88.6
Q ss_pred HHHhcCChHHHHHHHH--HHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCH
Q 035749 69 GLCKEGFVDKAKELLL--QMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKM 146 (405)
Q Consensus 69 ~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (405)
...-.++++.+.++.. ++.. .+ +....+.++..+.+.|..+.|+++... .. .-.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCH
Confidence 3444677777666664 2221 11 245567777777777877777766432 21 223445567777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHH
Q 035749 147 EEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (405)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (405)
+.|.++.+. ..+...|..|.......|+++-|++.|.+..+ +..|+-.|...|+.+...++.+..
T Consensus 335 ~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 777765443 23566788888888888888888887776543 345666677777777777776666
Q ss_pred HhCCCCCchhhHHHHHHHHHccccHHHHHHHHHH
Q 035749 227 LSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDE 260 (405)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (405)
...| -++....++.-.|+.++..+++.+
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6554 234445555666777777766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.16 Score=36.07 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKN--INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
.+..+..-.....+.|++++|.+.|+.+..+- -+-...+...|+.+|.+.+++++|...+++.++..+.-....|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 34455555666778899999999999998762 1224566677889999999999999999999987544333445555
Q ss_pred HHHHHc
Q 035749 137 MDELCK 142 (405)
Q Consensus 137 ~~~~~~ 142 (405)
+.+++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.34 Score=39.79 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=35.1
Q ss_pred HHHHHHHHHHccCCHH---HHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 167 VYNTLMDGFCLTGRVN---RAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
+...++.+|...+..+ +|..+++.+.... +..+..+-.-+..+.+.++.+.+.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666666543 3444454554332 223444445555566667777777777777765
|
It is also involved in sporulation []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.12 Score=42.58 Aligned_cols=231 Identities=10% Similarity=0.063 Sum_probs=141.0
Q ss_pred HHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHH----HHHhCC-CCCChHHHHHHH
Q 035749 28 GLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLL----QMKDKN-INPDVVTYNSVI 102 (405)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~-~~~~~~~~~~l~ 102 (405)
-+.+..+.++|+..+.+.+.+-.+ .-....++..+..+..+.|.+++++..-- -..+.. -..--..|..+.
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~----~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnla 90 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSD----LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLA 90 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHH----HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778889999988887764311 11223467777888888888887765422 222211 011134556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-CCCc---cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHH
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQ-GVQP---NVVTFSVIMDELCKNGKMEEASQLLELMIQIG-----VRPNAFVYNTLMD 173 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~ 173 (405)
+++-+.-++.+++.+-..-... |..| .......+..++...+.++++++.|+...+.. ......++..+..
T Consensus 91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgs 170 (518)
T KOG1941|consen 91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGS 170 (518)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHH
Confidence 6666666777777665554432 1111 12334456677777888999999998876542 1223467888999
Q ss_pred HHHccCCHHHHHHHHHHHHhc----CCCCChhhH-----HHHHHHHhhcCChHHHHHHHHHHHh----CCCCCc-hhhHH
Q 035749 174 GFCLTGRVNRAKELFVSMESM----GCKHNVFSY-----SILINGYCKNKEIEGALSLYSEMLS----KGIKPT-VVTYN 239 (405)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~ 239 (405)
.|.+..|+++|.-+..+..+. ++..-...| ..+.-++...|..-+|.+.-++..+ .|-.+. .....
T Consensus 171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~ 250 (518)
T KOG1941|consen 171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLL 250 (518)
T ss_pred HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 999999999998877766442 221111122 2344456667777777777666543 342221 22344
Q ss_pred HHHHHHHccccHHHHHHHHHHHH
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQ 262 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~ 262 (405)
.+...|...|+.+.|+.-|+...
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHHHH
Confidence 56677888999998888887654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.012 Score=32.29 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
.++..+...+...|++++|.++|+++.+.. |.|...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 345666666666677777777766666653 4445544443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.41 Score=40.01 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEE 44 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~ 44 (405)
+|..+.......|+..-|..+++.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~ 25 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL 25 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc
Confidence 356667777777887777776653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.19 Score=41.01 Aligned_cols=152 Identities=15% Similarity=0.139 Sum_probs=85.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHh----hHHHHHHHHHcCCCH
Q 035749 71 CKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVV----TFSVIMDELCKNGKM 146 (405)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~ 146 (405)
.-.|+..+|-..++++.+. .|.|...+...=.+|...|+...-...++++... -.++.. ....+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3456666666666666654 3556666666666677777766666666666543 112222 222233344566777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC---CChhhHHHHHHHHhhcCChHHHHHHH
Q 035749 147 EEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK---HNVFSYSILINGYCKNKEIEGALSLY 223 (405)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 223 (405)
++|++.-++..+.+ +.|.....+....+...|++.++.++..+-...=-. .-..-|=...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777776665 556666666666666677777777666543321000 00111222233445556777777777
Q ss_pred HH
Q 035749 224 SE 225 (405)
Q Consensus 224 ~~ 225 (405)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 65
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.25 Score=36.23 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=94.8
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKP-DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVV 96 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (405)
+...|..-+. +.+.+..++|+.-|..+.+.+ ... ..-..........+.|+...|...|+++-.....|-+.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg------~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~ 130 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTG------YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIG 130 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcC------CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchh
Confidence 4455665555 457788899999999988776 222 23355566777788899999999999987654333222
Q ss_pred -HHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 97 -TYN--SVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 97 -~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
-.. .-...+...|.++....-.+-+-..+.+.-...-..|..+-.+.|++..|.++|..+....
T Consensus 131 rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 131 RDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 111 1233456788899888888887766555555556677777889999999999999887653
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.13 Score=35.58 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=38.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCH
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNA---FVYNTLMDGFCLTGRV 181 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 181 (405)
....|+.+.|++.|.+.+..- +.....|+.-..++.-.|+.++|+.-+++.++..-+.+. ..|..-...|...|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 334445555555554444431 224444444445554455555555444444443211111 1222223344445555
Q ss_pred HHHHHHHHHHHhcC
Q 035749 182 NRAKELFVSMESMG 195 (405)
Q Consensus 182 ~~a~~~~~~~~~~~ 195 (405)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 55555555444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.41 Score=37.33 Aligned_cols=205 Identities=12% Similarity=0.077 Sum_probs=98.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 035749 132 TFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYC 211 (405)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (405)
.|.....+|....++++|...+.+..+. ...+...|. - ...++.|.-+.+++... +.-...|+.-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455666677777777766665532 122222221 1 12234444444444443 222334455555666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc---C--CCccHHHHHHHHHHHhcCCCh
Q 035749 212 KNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH---G--VAADTWAYRTFIDGLCKNGYI 286 (405)
Q Consensus 212 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~ 286 (405)
.+|.++.|-..+++.-+. .+.-++++|+++|.+.... + ...-...+......+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666665555554321 1122333444444332211 0 011122233344455555566
Q ss_pred HHHHHHHHHHHhc-----CCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccC---CCcCccHHHHHHHHHHHHcCCCHHH
Q 035749 287 VEALELFRTLRIL-----KCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPR---GVLIADVVTYNIMIHALCADGKMDK 358 (405)
Q Consensus 287 ~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~ 358 (405)
++|-..+.+-... ..+.-...+...+-.+....++..|...++.-.+ ..-.-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 6555444332111 0111123455556666777788888888877433 22223566677777655 4566666
Q ss_pred HHHHH
Q 035749 359 AHDLF 363 (405)
Q Consensus 359 A~~~~ 363 (405)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 65544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.8 Score=39.90 Aligned_cols=152 Identities=12% Similarity=0.098 Sum_probs=81.6
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIR 103 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (405)
.++...-+..++.+-++.-.++++.+ +.-+..|..|.+- ......++.+++++..+.+ ...+..--
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~-------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAg----E~~lg~s~- 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN-------PDCADAYILLAEE--EASTIVEAEELLRQAVKAG----EASLGKSQ- 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh-------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHH----HHhhchhh-
Confidence 34444556666666666666766643 2233444444332 2344677777777766543 11110000
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHH
Q 035749 104 GFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVR-PNAFVYNTLMDGFCLTGRVN 182 (405)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 182 (405)
.....|. .++........|-..+-..+..++.+.|+.++|++.++++.+.... ....+...|+.++...+.+.
T Consensus 239 ~~~~~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 239 FLQHHGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhhcccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 0000111 1111111212222333345666777888888888888888765311 13345667888888888888
Q ss_pred HHHHHHHHHHhcC
Q 035749 183 RAKELFVSMESMG 195 (405)
Q Consensus 183 ~a~~~~~~~~~~~ 195 (405)
++..++.+..+..
T Consensus 313 d~q~lL~kYdDi~ 325 (539)
T PF04184_consen 313 DVQALLAKYDDIS 325 (539)
T ss_pred HHHHHHHHhcccc
Confidence 8888888876543
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.32 Score=40.28 Aligned_cols=228 Identities=13% Similarity=0.116 Sum_probs=136.9
Q ss_pred HHhcCChHHHHHHHHHHHhCC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHH----HHHCC-CCccHhhHHHHHHHHHc
Q 035749 70 LCKEGFVDKAKELLLQMKDKN--INPDVVTYNSVIRGFCYANDSNEAKRLFIE----MMDQG-VQPNVVTFSVIMDELCK 142 (405)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~ 142 (405)
+....+.++|+..+.+....- ...-..++..+..+..+.|.+++++..--. ..+.. ...-...|..+.+.+-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777666654431 011234455666677777777766543211 11110 01123455566666666
Q ss_pred CCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-----CChhhHHHHHHHHhhc
Q 035749 143 NGKMEEASQLLELMIQI-GVRP---NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK-----HNVFSYSILINGYCKN 213 (405)
Q Consensus 143 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ 213 (405)
.-++.+++.+-...... |..+ .......+..++...+.++++++.|+........ ....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66777777776665543 1122 1233445677888888999999999987654211 2345788899999999
Q ss_pred CChHHHHHHHHHHHhC----CCCCchhhH-----HHHHHHHHccccHHHHHHHHHHHHH----cCCCc-cHHHHHHHHHH
Q 035749 214 KEIEGALSLYSEMLSK----GIKPTVVTY-----NTLFIGLFEIHQVERAFKLFDEMQR----HGVAA-DTWAYRTFIDG 279 (405)
Q Consensus 214 ~~~~~a~~~~~~~~~~----~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~ 279 (405)
.|+++|.-...+..+. ++..-..-| ..+..++...|....|.+.-++..+ .|..+ ....+..+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999988777665442 222111122 2344556677777777777666543 34222 24456677888
Q ss_pred HhcCCChHHHHHHHHHHH
Q 035749 280 LCKNGYIVEALELFRTLR 297 (405)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~ 297 (405)
|...|+.+.|..-|+.+.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 999999999888777653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.51 Score=37.25 Aligned_cols=63 Identities=5% Similarity=-0.070 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKN--INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
.+..-+..-.+.|++++|.+.|+.+.... -+-...+.-.++.++.+.++.+.|+...++.+..
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33344444566777888888887776552 1223444555666777777777777777777665
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.55 Score=37.29 Aligned_cols=224 Identities=20% Similarity=0.082 Sum_probs=144.6
Q ss_pred CCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHhhcCChHHHH
Q 035749 143 NGKMEEASQLLELMIQIGVR-PNAFVYNTLMDGFCLTGRVNRAKELFVSMESM-GCKHNVFSYSILINGYCKNKEIEGAL 220 (405)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (405)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35566666666666655322 13566677777788888888888888877652 22445566667777777788888888
Q ss_pred HHHHHHHhCCCCCchhhHHHHHH-HHHccccHHHHHHHHHHHHHcCC--CccHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 035749 221 SLYSEMLSKGIKPTVVTYNTLFI-GLFEIHQVERAFKLFDEMQRHGV--AADTWAYRTFIDGLCKNGYIVEALELFRTLR 297 (405)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (405)
..+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888887753332 122222233 67788888888888888755321 0123333344444566778888888888887
Q ss_pred hcCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 298 ILKCEL-DIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 298 ~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
... +. ....+..+...+...++++.|...+......... ....+..+...+...+..+.+...+.+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 664 33 4666777777888888888888888877764211 2334444444444666788888888777764
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.32 Score=33.83 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcC
Q 035749 339 DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN 405 (405)
Q Consensus 339 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 405 (405)
+.......+.....+|+-+.-.++++.+.+. -.+++.....+..+|.+.|+..++-+++.+.-++|
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3455666677778888888888888887753 46788888888888999999999998888887765
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.38 Score=33.45 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 035749 131 VTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG 195 (405)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (405)
......+......|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334445555666666666666666665433 5566666666666666666666666666666655
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.65 Score=35.59 Aligned_cols=185 Identities=11% Similarity=0.048 Sum_probs=103.5
Q ss_pred HHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 035749 28 GLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY 107 (405)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (405)
.|-..|-+.-|.-=|.+.+... |.-+.+||.+...+...|+++.|.+.|+...+.. |....++..-.-.+.-
T Consensus 74 lYDSlGL~~LAR~DftQaLai~-------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY 145 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY 145 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcC-------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeee
Confidence 3444555555666666666654 4557889999888889999999999999888764 2222232222233445
Q ss_pred cCCHHHHHHHHHHHHHCCCC-ccHhhHHHHHHHHHcCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHH-HHHHccCCHHHH
Q 035749 108 ANDSNEAKRLFIEMMDQGVQ-PNVVTFSVIMDELCKNGKMEEASQLLE-LMIQIGVRPNAFVYNTLM-DGFCLTGRVNRA 184 (405)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a 184 (405)
.|++.-|.+-+...-+.+.. |-...|..+.. ..-++.+|..-+. +..+ .|..-|...+ ..|...-..+.
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~- 217 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEET- 217 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHH-
Confidence 68888888777766655322 22222222221 2335566655443 3332 2333333222 22221111121
Q ss_pred HHHHHHHHhcCC------CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 035749 185 KELFVSMESMGC------KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (405)
Q Consensus 185 ~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (405)
+++++..... ..-..+|--+...+...|+.++|..+|+-.+..+
T Consensus 218 --l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 218 --LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred --HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2222222110 1125678888888889999999999998887764
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.55 Score=34.68 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC--ChHHHHHHHHHHH
Q 035749 220 LSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG--YIVEALELFRTLR 297 (405)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 297 (405)
.+.++.+...+++|+...+..++..+.+.|++.... .++..++-+|.......+-.+.... -.+-|++++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 444555555666677777777777777766654433 3333444444444433332222211 1222333333322
Q ss_pred hcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 035749 298 ILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSL 331 (405)
Q Consensus 298 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 331 (405)
. .+..++..+...|++-+|.++.+..
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 1 2344555666677777777666654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.17 Score=40.80 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCccHhhH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMD-----QGVQPNVVTF 133 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 133 (405)
-..++..++..+...|+++.+.+.++++.... |-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 35688889999999999999999999998886 77889999999999999999999999988865 4788888877
Q ss_pred HHHHHHH
Q 035749 134 SVIMDEL 140 (405)
Q Consensus 134 ~~l~~~~ 140 (405)
.......
T Consensus 231 ~~y~~~~ 237 (280)
T COG3629 231 ALYEEIL 237 (280)
T ss_pred HHHHHHh
Confidence 7666663
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.78 Score=36.36 Aligned_cols=201 Identities=21% Similarity=0.114 Sum_probs=111.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHH-
Q 035749 131 VTFSVIMDELCKNGKMEEASQLLELMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILIN- 208 (405)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 208 (405)
.........+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44445555556666666666666555542 123344455555555556666666666666665543221 122222222
Q ss_pred HHhhcCChHHHHHHHHHHHhCCC--CCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHhcCCC
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGI--KPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA-DTWAYRTFIDGLCKNGY 285 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 285 (405)
.+...|+++.+...+.+...... ......+......+...++.+.+...+....... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56666777777777776644211 0122223333333556667777777777776653 23 35566666667777777
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC
Q 035749 286 IVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG 334 (405)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 334 (405)
++.+...+....... +.....+......+...+..+.+...+......
T Consensus 218 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777776653 222334444444444666677777777766653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.8 Score=40.40 Aligned_cols=152 Identities=18% Similarity=0.162 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
...-+..+.+..-++-|+.+-+.-... ...-..........+.+.|++++|...|-+-+.. +.| ..+
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d-------~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLD-------EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 445566677777777777776653211 0112334555566666788999988877665543 122 234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (405)
+.-|....++.+--.+++.+.+.|.. +...-+.|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 55566666777777788888888776 66666788888888888887777666543 2211 01123344445555555
Q ss_pred HHHHHHHHH
Q 035749 182 NRAKELFVS 190 (405)
Q Consensus 182 ~~a~~~~~~ 190 (405)
++|..+-.+
T Consensus 480 ~~a~~LA~k 488 (933)
T KOG2114|consen 480 DEAELLATK 488 (933)
T ss_pred HHHHHHHHH
Confidence 555544443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.2 Score=38.33 Aligned_cols=128 Identities=20% Similarity=0.315 Sum_probs=59.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhH-HHHHHH
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMESMG-CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTY-NTLFIG 244 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~ 244 (405)
+|...++...+..-.+.|..+|-++.+.+ ..+++..+++++..++ .|++..|..+|+.-... .||...| ...+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 34444444444444555555555555544 3344455555554443 24555555555544433 2233322 223333
Q ss_pred HHccccHHHHHHHHHHHHHcCCCcc--HHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035749 245 LFEIHQVERAFKLFDEMQRHGVAAD--TWAYRTFIDGLCKNGYIVEALELFRTLRI 298 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 298 (405)
+...++-+.|..+|+..+.. +..+ ...|..++.--..-|+...+..+-+++..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 44455555555555543332 1111 33455555555555555555555444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.53 Score=33.92 Aligned_cols=125 Identities=13% Similarity=0.126 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC
Q 035749 64 TTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN 143 (405)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (405)
..++..+...+.+......++.+...+ +.++..++.++..|++.+ ..+..+.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 456666666778888888888887776 467778888888887654 3333344332 11333445567777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 035749 144 GKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLT-GRVNRAKELFVSMESMGCKHNVFSYSILINGYC 211 (405)
Q Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (405)
+.++++..++.++.. +...+..+... ++++.|.+++.+ ..++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 777777777766522 11222223333 667777776654 224556666665554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.26 Score=39.80 Aligned_cols=80 Identities=8% Similarity=0.135 Sum_probs=69.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 035749 94 DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ-----IGVRPNAFVY 168 (405)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 168 (405)
-..++..++..+...|+++.+...++++....+ -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 356788899999999999999999999998854 4889999999999999999999999998876 4788888887
Q ss_pred HHHHHH
Q 035749 169 NTLMDG 174 (405)
Q Consensus 169 ~~l~~~ 174 (405)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 776666
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.55 Score=33.84 Aligned_cols=41 Identities=7% Similarity=0.042 Sum_probs=18.7
Q ss_pred HHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhc
Q 035749 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCK 282 (405)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 282 (405)
++..+...+.+.....+++.+...+ +.++...+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3344444444455555555544443 2344444444444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.66 Score=34.10 Aligned_cols=137 Identities=16% Similarity=0.138 Sum_probs=97.3
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHh-h--H
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD-VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVV-T--F 133 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--~ 133 (405)
.....|..-+. +.+.+..++|+.-|..+.+.|...- +...........+.|+...|...|+++-.....|-.. - -
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34556666555 5677889999999999998864321 2233334556778999999999999998765444433 1 1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 035749 134 SVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG 195 (405)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (405)
..-.-.+...|.++....-.+.+...+-+.....-..|.-+-.+.|++..|.+.|..+....
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 12233466889999999988888766544444555677778889999999999999987643
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.017 Score=29.52 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=25.5
Q ss_pred HHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 42 FEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
|+++++.+ |.++.+|+.+...+...|++++|+
T Consensus 2 y~kAie~~-------P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-------PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-------CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666665 667889999999999999988875
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.2 Score=36.88 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHC
Q 035749 77 DKAKELLLQMKDKNINPDVVTYNSVIRGFCY--AN----DSNEAKRLFIEMMDQ 124 (405)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~ 124 (405)
++.+.+++.+.+.|...+..+|-+....... .. ...+|..+|+.|++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3455666677777666665555442222222 11 234566677777664
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.50 E-value=2.7 Score=40.97 Aligned_cols=104 Identities=15% Similarity=0.093 Sum_probs=57.0
Q ss_pred HHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 035749 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (405)
+.+...+++|.-.|+..-+ ....+.+|...|+|.+|+.+..++.... .--..+-..|+.-+...+++-+|
T Consensus 949 L~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhH
Confidence 3344555555555544322 1234556667777777777776654311 11111225666677777887777
Q ss_pred HHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 325 WELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDM 366 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 366 (405)
-+++.+.... ....+..+++...|++|.++....
T Consensus 1019 a~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1019 AKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 7777766543 122233455556666666655443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.037 Score=28.73 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHc
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMIN 47 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 47 (405)
+|..|...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478899999999999999999999653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.45 Score=35.90 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQM 86 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (405)
+..+...|.+.|+.+.|++.|.++.+.... ...-...+..+|+.....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~----~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTS----PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCC----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444445555555555555555554443210 1112334444455555555555544444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.047 Score=28.31 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777744
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.27 Score=39.21 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=54.6
Q ss_pred cHhhHHHHHHHHHc-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhH
Q 035749 129 NVVTFSVIMDELCK-----NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSY 203 (405)
Q Consensus 129 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (405)
|..+|...+..+.. .+.++-....++.|.+-|+..|..+|+.|++.+-+..- .|. ..+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HHH
Confidence 55556555555432 34455555666666666777777777766665432211 000 001
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHcccc
Q 035749 204 SILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQ 250 (405)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 250 (405)
....-.|- .+-+-+++++++|...|+.||..+-..++.++.+.+-
T Consensus 129 Q~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111111 1223456677777777777777777777777666554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=2 Score=37.35 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 035749 23 STLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVI 102 (405)
Q Consensus 23 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (405)
..-|.-....|+.-.|-+-+..++++. +.++.............|+++.+...+...... +.....+...++
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~-------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~ 364 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQ-------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRL 364 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhC-------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHH
Confidence 334555567788877766555555554 344444455555667789999999988766543 334567788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
+...+.|+++.|...-+-|+...++ ++.............|-++++...|+++...+
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999999999999999887666 55554444444456678899999999887665
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.12 E-value=1 Score=41.76 Aligned_cols=245 Identities=16% Similarity=0.140 Sum_probs=139.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGY 210 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (405)
...-+..+.+...++-|+.+-+. .+.+++ .........-+.+.|++++|...|-+....- .| ..++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHh
Confidence 34556667777777777766543 222222 2234445566778899999988887766431 22 2345566
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHH
Q 035749 211 CKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEAL 290 (405)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 290 (405)
....+...-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 6777777788888888888755 44455678889999999888777766544 2211 112345566666677777776
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 035749 291 ELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKG 370 (405)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 370 (405)
.+-.+... +...... .+-..+++++|.+++..+.-... ..+.+.....+. ...+++-..++-+.....
T Consensus 484 ~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~e~---l~~l~kyGk~Ll-~h~P~~t~~ili~~~t~~ 551 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPISEL---LRTLNKYGKILL-EHDPEETMKILIELITEL 551 (933)
T ss_pred HHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHHHH---HHHHHHHHHHHH-hhChHHHHHHHHHHHhhc
Confidence 65544332 3333333 34567889999999987753211 222222233322 234555555555554432
Q ss_pred CCCCHHHHHHHH-----HHHHccCchhHHHHHHHHhh
Q 035749 371 VAPDCVAFNTLM-----LGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 371 ~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~ 402 (405)
.+++.......+ ....-.++++....+++.|.
T Consensus 552 ~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~ 588 (933)
T KOG2114|consen 552 NSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMS 588 (933)
T ss_pred CCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHH
Confidence 222222222211 12234566666666666544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.09 E-value=2.7 Score=38.60 Aligned_cols=244 Identities=13% Similarity=0.068 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHhCCCCCChHHHHHHHHHHH-----hcCCHHHHHHHHHHHHH-------CCCCccHhhHHHHHHHHHcC
Q 035749 76 VDKAKELLLQMKDKNINPDVVTYNSVIRGFC-----YANDSNEAKRLFIEMMD-------QGVQPNVVTFSVIMDELCKN 143 (405)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 143 (405)
...+..+++...+.| +......+..++. ...+.+.|+.+|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888776 4444444444333 44688999999988876 44 233455667777664
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHh----hc
Q 035749 144 G-----KMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL-TGRVNRAKELFVSMESMGCKHNVFSYSILINGYC----KN 213 (405)
Q Consensus 144 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 213 (405)
. +.+.|..++.+....| .|+.......+..... ..+...|.++|......|. ..++-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcC
Confidence 3 6677999998888877 4555444333332222 2467889999999888772 222222222222 23
Q ss_pred CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHH---hc----CCCh
Q 035749 214 KEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGL---CK----NGYI 286 (405)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~~ 286 (405)
.+...|..++.+..+.| .|....-...+..+.. ++++.+.-.+..+.+.+.......-..++... .. ..+.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccch
Confidence 47788888998888876 3332222222333333 67777777766666655322211111111111 11 1244
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc----CCHHHHHHHHhhccCC
Q 035749 287 VEALELFRTLRILKCELDIRSYSCLIDGLCKS----GRLKIAWELFHSLPRG 334 (405)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~ 334 (405)
+.+...+.+....| +......+...|... .+++.|...+......
T Consensus 456 ~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred hHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 55555555555433 333444444444332 2366666666655554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.66 Score=35.01 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD--VVTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
..+..++..|.+.|+.+.|++.|.++.+....+. ...+-.+|+.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566777777777777777777777666533222 34455666666677777766666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.6 Score=35.89 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=97.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChHHHHH-------HHHHHHhcC-CHHHHHHHHHHHHHC--------CCCcc----
Q 035749 70 LCKEGFVDKAKELLLQMKDKNINPDVVTYNS-------VIRGFCYAN-DSNEAKRLFIEMMDQ--------GVQPN---- 129 (405)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~---- 129 (405)
..++|+.+.|..++.+........++..... +.......+ +++.|..++++..+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 3578999999999998876431223222222 233344556 888888887766543 12222
Q ss_pred -HhhHHHHHHHHHcCCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 035749 130 -VVTFSVIMDELCKNGKME---EASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSI 205 (405)
Q Consensus 130 -~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (405)
..++..++.++...+..+ +|..+++.+... .+..+.++..-++.+.+.++.+.+.+.+.+|...- ......+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 245667788888777654 556666666444 23345566566777777899999999999998763 223344444
Q ss_pred HHHHHhh--cCChHHHHHHHHHHHhCCCCCch
Q 035749 206 LINGYCK--NKEIEGALSLYSEMLSKGIKPTV 235 (405)
Q Consensus 206 l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 235 (405)
.+..+.. ......+...+..++...+.|..
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 4444422 22345566666665554444443
|
It is also involved in sporulation []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.98 E-value=2.9 Score=38.50 Aligned_cols=320 Identities=13% Similarity=0.097 Sum_probs=168.9
Q ss_pred HHhcCChHHHHHHHHHH--------HhCCCCCChHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 70 LCKEGFVDKAKELLLQM--------KDKNINPDVVTYNS-----VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 70 ~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.+..++++-..+.+.+ ...|++.+..-|.. ++.-+...+.+..|+++-..+...-.. +...|...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHH
Confidence 33445555555554443 23466766666654 456667778888888887776432111 24555666
Q ss_pred HHHHHcCCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC----CChhhHHHHHHHH
Q 035749 137 MDELCKNGK--MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK----HNVFSYSILINGY 210 (405)
Q Consensus 137 ~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~ 210 (405)
...+.+..+ -+++.+.++.=.+.. ..+...|..+.+-....|+++-|..+++.=...+.. .+..-+...+.-.
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 666655532 122332222222221 234566778888888889998888877642221100 0112233444455
Q ss_pred hhcCChHHHHHHHHHHHhCC-----------CCCchhhHHHHHH--------HHHccccHHHHHHH--HHHHHHcC-CCc
Q 035749 211 CKNKEIEGALSLYSEMLSKG-----------IKPTVVTYNTLFI--------GLFEIHQVERAFKL--FDEMQRHG-VAA 268 (405)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~--------~~~~~~~~~~a~~~--~~~~~~~~-~~~ 268 (405)
.+.|+.+-...++-.+...- .+.....|..+++ .+...++-..+... ++...+.. +.+
T Consensus 557 ies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~ 636 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEG 636 (829)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcc
Confidence 56666666555555444320 1111122222222 01111111111111 11111100 111
Q ss_pred cHHHHHHHHHHHhcCCChH---HH-------HHHHHHHHh-cCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC
Q 035749 269 DTWAYRTFIDGLCKNGYIV---EA-------LELFRTLRI-LKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI 337 (405)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~---~a-------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (405)
-..........+.+..... +| +.+.+.+.. .+.....-+.+.-+.-+...|+..+|.++-.+.. .
T Consensus 637 r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----i 712 (829)
T KOG2280|consen 637 RIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----I 712 (829)
T ss_pred cchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----C
Confidence 1222333334444332211 11 111122211 1212223345556667778899999999877765 4
Q ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 338 ADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
||...|..-+.+++..++|++-.++-+... .+.-|.-.+.+|.+.|+.++|.+++-+.
T Consensus 713 pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 713 PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 688999999999999999999777665544 2445777889999999999999988765
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.97 E-value=4 Score=39.91 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHH--HHHHHHHH
Q 035749 272 AYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVV--TYNIMIHA 349 (405)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~ 349 (405)
.+......+...+.+++|.-+|+..-+ ....+.+|..+|++.+|+.+..++... -+.. +-..|+..
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHH
Confidence 344444555566777777766665432 223466788888888888888776542 1222 22567777
Q ss_pred HHcCCCHHHHHHHHHHHHh
Q 035749 350 LCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 350 ~~~~g~~~~A~~~~~~~~~ 368 (405)
+...+++-+|-++..+...
T Consensus 1009 L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHcccchhHHHHHHHHhc
Confidence 8888888888888877765
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.042 Score=28.05 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=12.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHH
Q 035749 302 ELDIRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~a 324 (405)
|.+..+|+.++..|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 44455555555555555555554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.84 E-value=1.1 Score=32.75 Aligned_cols=55 Identities=16% Similarity=-0.068 Sum_probs=28.4
Q ss_pred HHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 28 GLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
.-.+.++.+.+..+++.+.-..+ ..+..-..-...++..|+|.+|+.+|+++...
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP-------~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRP-------EFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCC-------CchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 33455666666666666655431 12222222233355566666666666666544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.2 Score=32.90 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=13.4
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcCchHH
Q 035749 9 KLKAFGCEPNVITYSTLINGLCRTGHTIV 37 (405)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 37 (405)
.+.+.+++|+...+..++..+.+.|++..
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33344444444444444444444444443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.87 Score=39.49 Aligned_cols=109 Identities=15% Similarity=-0.026 Sum_probs=65.3
Q ss_pred HHhcCCChHHHHHHHHHHHhc---CCCcc-----HHHHHHHHHHHHhcCCHHHHHHHHhhccC-------CCcCcc----
Q 035749 279 GLCKNGYIVEALELFRTLRIL---KCELD-----IRSYSCLIDGLCKSGRLKIAWELFHSLPR-------GVLIAD---- 339 (405)
Q Consensus 279 ~~~~~~~~~~a~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~---- 339 (405)
.+.-.|++.+|.+++...--. |...+ ...++.+...+.+.|.+.-+..+|.+..+ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 344567777777776553211 11111 11235555555566666666555555432 233331
Q ss_pred ------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 035749 340 ------VVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRN 388 (405)
Q Consensus 340 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 388 (405)
..........|...|++-.|.+.|.+.... +..++..|..+..+|...
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 112223445678899999999999988876 677889999999988743
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.98 Score=34.02 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=86.5
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV--IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
-...|..++.... .+.+ +.....+++...++ ...-. .-..+...+...|++++|..-++..... |..
T Consensus 53 AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~------~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~D 121 (207)
T COG2976 53 ASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANG------KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKD 121 (207)
T ss_pred HHHHHHHHHHHHh-cCCc-hhHHHHHHHHhhcc------ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chh
Confidence 3446777777664 4444 55666666666652 22222 3445567788889999999998887754 222
Q ss_pred HHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 96 VTY-----NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 96 ~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
..+ ..|.+.....|.+++|+..++.....+. .......-..++...|+-++|..-|++.++.+
T Consensus 122 e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 122 ENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 222 3456677788999999998887765432 22233445667888999999999999988875
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.66 Score=35.03 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=54.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC
Q 035749 69 GLCKEGFVDKAKELLLQMKDKNINPD-----VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN 143 (405)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (405)
-+.+.|++++|..-|...+..- |+. ...|..-..++++.+.++.|+.-..+.++.++. ...+...-+.+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3455677777777777666552 322 233444455666777777777777766665433 333444445567777
Q ss_pred CCHHHHHHHHHHHHHc
Q 035749 144 GKMEEASQLLELMIQI 159 (405)
Q Consensus 144 ~~~~~a~~~~~~~~~~ 159 (405)
..++.|+.-|.++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7777777777777765
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.11 Score=26.39 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 341 VTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 341 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
.+|..++.++...|++++|+..|+++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3455666666666666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.8 Score=33.31 Aligned_cols=28 Identities=21% Similarity=0.067 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035749 271 WAYRTFIDGLCKNGYIVEALELFRTLRI 298 (405)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 298 (405)
.++..+...+...|+.++|..+|+-...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3445555555555555555555555544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.5 Score=32.00 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=8.6
Q ss_pred HhcCCChHHHHHHHHHHH
Q 035749 280 LCKNGYIVEALELFRTLR 297 (405)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~ 297 (405)
+...|++.+|..+|+.+.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 344445555555555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.7 Score=36.97 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=71.1
Q ss_pred CCChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH
Q 035749 92 NPDVVTYNSVIRGFCYA-----NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAF 166 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 166 (405)
..|-.+|...+..+... +.++-....++.|.+.|+..|..+|..|++.+-+..- .|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence 45777787777776543 5566666778888999999999999999887654321 111 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (405)
++....-.|- .+-+=++.++++|...|+.||-.+-..+++++.+.+..
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1111111111 22345678888888888888888888888888776654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.48 Score=35.94 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=11.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHH
Q 035749 92 NPDVVTYNSVIRGFCYANDSNEA 114 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a 114 (405)
.+|+..+..|+..+.+.|+.+.|
T Consensus 175 ~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 175 NFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCHHHHHHHHHHHHHhcchhhh
Confidence 34445555555555555554444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.15 E-value=4.6 Score=37.13 Aligned_cols=275 Identities=14% Similarity=0.059 Sum_probs=156.0
Q ss_pred hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHH---HHhcCChHHHHHHHHHHHh-------CCCCCChHHHHHHHHH
Q 035749 35 TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDG---LCKEGFVDKAKELLLQMKD-------KNINPDVVTYNSVIRG 104 (405)
Q Consensus 35 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~ 104 (405)
...|.++++.....+ ...+......+.. +....+.+.|+..|+.+.+ .+ .+.....+..+
T Consensus 228 ~~~a~~~~~~~a~~g-------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~ 297 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRL 297 (552)
T ss_pred hhHHHHHHHHHHhhc-------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHH
Confidence 467889998887765 1222222222222 3356789999999999876 44 44466677777
Q ss_pred HHhcC-----CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--
Q 035749 105 FCYAN-----DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK-NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFC-- 176 (405)
Q Consensus 105 ~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 176 (405)
|.+.. +...|..++...-..|.+ +.......+..... ..+...|.++|....+.|.. ..+..+..+|.
T Consensus 298 Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G 373 (552)
T KOG1550|consen 298 YLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELG 373 (552)
T ss_pred HhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhC
Confidence 77643 667899999999888654 44443322222222 24678999999999998832 22323333322
Q ss_pred --ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHH-HH---HHc---
Q 035749 177 --LTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLF-IG---LFE--- 247 (405)
Q Consensus 177 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~---~~~--- 247 (405)
...+...|..++++..+.| .|....-...+..+.. +.++.+.-.+..+.+.+... ..+-...+ .. ...
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~ 450 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRG 450 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccc
Confidence 3346889999999999887 3333332333344444 77777777777766654321 11111111 11 111
Q ss_pred -cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC----CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----c
Q 035749 248 -IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN----GYIVEALELFRTLRILKCELDIRSYSCLIDGLCK----S 318 (405)
Q Consensus 248 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 318 (405)
..+.+.+...+......| +......+...|... .+++.|...+......+ ......+...+.. .
T Consensus 451 ~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~ 523 (552)
T KOG1550|consen 451 VISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIK 523 (552)
T ss_pred cccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcc
Confidence 224556666666665544 444445555544332 34666766666665543 3333333333321 2
Q ss_pred CCHHHHHHHHhhccCC
Q 035749 319 GRLKIAWELFHSLPRG 334 (405)
Q Consensus 319 ~~~~~a~~~~~~~~~~ 334 (405)
. +..|.++++...+.
T Consensus 524 ~-~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 524 V-LHLAKRYYDQASEE 538 (552)
T ss_pred h-hHHHHHHHHHHHhc
Confidence 2 56666666665543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.12 E-value=3.4 Score=35.44 Aligned_cols=65 Identities=12% Similarity=0.069 Sum_probs=46.9
Q ss_pred chhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCc---cHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035749 234 TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA---DTWAYRTFIDGLCKNGYIVEALELFRTLRI 298 (405)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 298 (405)
...++..+...+.+.|.++.|...+..+...+... .+......+..+-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567778888888999999998888887643111 344445556666677888888888888776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.12 E-value=9.4 Score=40.60 Aligned_cols=152 Identities=9% Similarity=0.011 Sum_probs=91.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc
Q 035749 65 TIIDGLCKEGFVDKAKELLLQMKDKNI--NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK 142 (405)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (405)
.+..+-.+.+.+.+|+..++.-..... ......+..+...|...++++....+...-.. +.. ....+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHh
Confidence 455566677888888888887311100 11233444555588888888888777664211 122 2234455667
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHH-HHHHHHhhcCChHHHHH
Q 035749 143 NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYS-ILINGYCKNKEIEGALS 221 (405)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~ 221 (405)
.|++..|...|+.+.+.+ ++....++.++......|.++......+-..... .+....++ .-..+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 789999999999988875 4456777777777777888877777666554432 22222222 22333355666665555
Q ss_pred HHH
Q 035749 222 LYS 224 (405)
Q Consensus 222 ~~~ 224 (405)
...
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.16 Score=25.61 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
.|..+..++...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555556666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.16 Score=25.75 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCC
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
.+|..+...+...|++++|+..|+++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578899999999999999999999999865
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.6 Score=33.27 Aligned_cols=79 Identities=10% Similarity=-0.013 Sum_probs=55.2
Q ss_pred HHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCch
Q 035749 315 LCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK---GVAPDCVAFNTLMLGCIRNNET 391 (405)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 391 (405)
+.+.|+ +.|...|-.+...+..-++.....|+..|. ..+.++++.++-++.+. +-.+|+..+.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 566777766666555446666555555444 67788888888888764 3367788888999999999988
Q ss_pred hHHH
Q 035749 392 SKVV 395 (405)
Q Consensus 392 ~~a~ 395 (405)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.59 E-value=6.8 Score=37.15 Aligned_cols=226 Identities=14% Similarity=0.062 Sum_probs=122.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHh-------hHHHHH-HHHHcCCCHHHHHHHHHHHHHcC----CCCCHHHHH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVV-------TFSVIM-DELCKNGKMEEASQLLELMIQIG----VRPNAFVYN 169 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~ 169 (405)
+.......++++|..+..++...-..|+.. .++.+- ......|+++++.++.+.....- ..+....+.
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 344556788999999988876542222211 222222 23346789999999888876641 233455666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHH-----HHHhhcCCh--HHHHHHHHHHHhC---CCC---Cchh
Q 035749 170 TLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILI-----NGYCKNKEI--EGALSLYSEMLSK---GIK---PTVV 236 (405)
Q Consensus 170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~--~~a~~~~~~~~~~---~~~---~~~~ 236 (405)
.+..+..-.|++++|..+.....+.....+...+..+. ..+...|+. .+....+...... ..+ +-..
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 77788888999999999988876653233443333222 234455632 2233333333221 011 1122
Q ss_pred hHHHHHHHHHccccHHHHHHHHHH----HHHcCCCccHHH--HHHHHHHHhcCCChHHHHHHHHHHHhcCCCc----cHH
Q 035749 237 TYNTLFIGLFEIHQVERAFKLFDE----MQRHGVAADTWA--YRTFIDGLCKNGYIVEALELFRTLRILKCEL----DIR 306 (405)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 306 (405)
+...++.++.+ .+.+..-... .......|-... +..++......|+.++|...++++......+ +..
T Consensus 582 ~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 582 IRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 34444444444 3333222222 222211111122 2366778888999999999988876543222 222
Q ss_pred HHHHHH--HHHHhcCCHHHHHHHHhh
Q 035749 307 SYSCLI--DGLCKSGRLKIAWELFHS 330 (405)
Q Consensus 307 ~~~~l~--~~~~~~~~~~~a~~~~~~ 330 (405)
.-...+ ......|+...+.....+
T Consensus 659 a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 659 AAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222222 234567888888777665
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.2 Score=25.25 Aligned_cols=30 Identities=17% Similarity=0.208 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCC
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
..|..+...+...|++++|++.|+++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999998865
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.31 E-value=7.6 Score=36.87 Aligned_cols=227 Identities=14% Similarity=0.065 Sum_probs=122.4
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCChh-------hHHHH-HHHHhhcCChHHHHHHHHHHHhC----CCCCchhhHHHH
Q 035749 174 GFCLTGRVNRAKELFVSMESMGCKHNVF-------SYSIL-INGYCKNKEIEGALSLYSEMLSK----GIKPTVVTYNTL 241 (405)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 241 (405)
......++++|..++.++...-..|+.. .++.+ .......|+++.|.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456778999999988876542122211 22222 22344578899999988887764 123345556667
Q ss_pred HHHHHccccHHHHHHHHHHHHHcCCCccHHHH---HHH--HHHHhcCCChH--HHHHHHHHHHhc---CCC---ccHHHH
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAY---RTF--IDGLCKNGYIV--EALELFRTLRIL---KCE---LDIRSY 308 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~~~~~--~a~~~~~~~~~~---~~~---~~~~~~ 308 (405)
..+..-.|++++|..+.....+..-.-+...+ ..+ ...+...|... +.+..+...... ..+ +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 77778889999999988876653212222222 222 23455666322 223333333221 111 122344
Q ss_pred HHHHHHHHhc-CCHHHHHHHHhhccCCCcCccHH--HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC----CCCHHHHHHH
Q 035749 309 SCLIDGLCKS-GRLKIAWELFHSLPRGVLIADVV--TYNIMIHALCADGKMDKAHDLFLDMEAKGV----APDCVAFNTL 381 (405)
Q Consensus 309 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l 381 (405)
..+..++.+. +...++..-+.--......|-.. .+..|+.+....|+.++|...+.++..... .++...-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4555555541 12222222222222221222222 223677888899999999999988876522 2333333333
Q ss_pred HHH--HHccCchhHHHHHHHH
Q 035749 382 MLG--CIRNNETSKVVELLHR 400 (405)
Q Consensus 382 ~~~--~~~~g~~~~a~~~~~~ 400 (405)
++. ....|+.+++...+.+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 332 3467888888777665
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=7.5 Score=36.45 Aligned_cols=135 Identities=10% Similarity=0.040 Sum_probs=65.3
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDA-VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY 107 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (405)
..+.|++..+.++-..+.. . +..+ ..|..+... .....+++....+++... .|.....-...+..+.+
T Consensus 43 a~~~g~~~~~~~~~~~l~d-~-------pL~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~ 111 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKD-Y-------PLYPYLEYRQLTQD-LMNQPAVQVTNFIRANPT--LPPARSLQSRFVNELAR 111 (644)
T ss_pred HHHCCCHHHHHHHHHhccC-C-------CcHhHHHHHHHHhc-cccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHH
Confidence 4567777777666666532 1 2211 122222221 112245544444443222 12223333344445556
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 035749 108 ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (405)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (405)
.+++....+.+.. .+.+...-...+.+....|+.++|......+-..| ...+.....++..+.+.|.
T Consensus 112 ~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 112 REDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred ccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 6777766653211 23344444455666777788777766666665554 3334455555555554443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.11 E-value=4.4 Score=33.61 Aligned_cols=132 Identities=14% Similarity=0.230 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc--CC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHccCC-
Q 035749 111 SNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK--NG----KMEEASQLLELMIQIGV---RPNAFVYNTLMDGFCLTGR- 180 (405)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 180 (405)
+++.+.+++.|.+.|..-+..+|......... .. ....+..+++.|.+... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556778888888877666555543333322 12 24567778888877631 1223333333322 3333
Q ss_pred ---HHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHhhcCC--hHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 035749 181 ---VNRAKELFVSMESMGCKHNV--FSYSILINGYCKNKE--IEGALSLYSEMLSKGIKPTVVTYNTLFIG 244 (405)
Q Consensus 181 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (405)
.+.++.+|+.+.+.|...+. ...+.++........ ..++.++++.+.+.|+++....|..++-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 34566667777665554432 222333322222222 33666777777777777666666555433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.99 Score=29.45 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=46.3
Q ss_pred HhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHH
Q 035749 3 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIID 68 (405)
Q Consensus 3 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (405)
+.+-++.+...+.-|++....+.+++|.+-+|+.-|+.+|+.+...- ..+...|..+++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-------~~~~~~y~~~lq 84 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-------GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cCchhhHHHHHH
Confidence 45566677777888999999999999999999999999999887543 234456666654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.85 E-value=3.3 Score=31.49 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=60.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcc----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 035749 104 GFCYANDSNEAKRLFIEMMDQGVQPN----VVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (405)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (405)
-+...|++++|..-|...+..-++.. ...|..-..++.+.+.++.|+.-..+.++.+ +........-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 35677888888888888876522211 2334445556777888888888888877775 333334444456777777
Q ss_pred CHHHHHHHHHHHHhc
Q 035749 180 RVNRAKELFVSMESM 194 (405)
Q Consensus 180 ~~~~a~~~~~~~~~~ 194 (405)
.++.|+.=|+++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 788888888887766
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.4 Score=29.08 Aligned_cols=77 Identities=6% Similarity=0.031 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035749 306 RSYSCLIDGLCKSGRLK--IAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLML 383 (405)
Q Consensus 306 ~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 383 (405)
.-+..--..|....+.| +..+-++.+....+.|++....+.+++|.+.+++..|+++|+-.+.+ ..+....|..++.
T Consensus 9 eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 9 EEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 33444444555544443 66777778888888899999999999999999999999999988876 2333336766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.62 E-value=2.8 Score=30.13 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=25.6
Q ss_pred hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 31 RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
..++++.+..+++.+.-..+ -.+...++-.. .++..|+|.+|+.+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP-----~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRP-----NLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCC-----CccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 45566666666665554432 11222233222 244556666666666665554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.56 Score=30.56 Aligned_cols=63 Identities=8% Similarity=-0.034 Sum_probs=48.7
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLML 383 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 383 (405)
+.=++.+-++.+......|++....+.+++|.+.+++..|+++|+-.+.+ ...+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44567777788877788899999999999999999999999999988754 2224456666553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.4 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 341 VTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 341 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777888888888887777764
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.37 Score=25.69 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcC
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMING 48 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 48 (405)
..+++.+...|...|++++|..+++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999998764
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.021 Score=41.46 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=45.2
Q ss_pred HHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 035749 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR 320 (405)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (405)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++...+++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 3445555666666666666666554445566666666677766665666655551111 112334455555555
Q ss_pred HHHHHHHHhhc
Q 035749 321 LKIAWELFHSL 331 (405)
Q Consensus 321 ~~~a~~~~~~~ 331 (405)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66655555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.04 E-value=4.2 Score=30.82 Aligned_cols=92 Identities=8% Similarity=0.011 Sum_probs=63.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCC
Q 035749 277 IDGLCKNGYIVEALELFRTLRILKCELD--IRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADG 354 (405)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 354 (405)
...+...+++++|..-++.........+ ..+-..+.+.....|.+|+|+..++.....++ .......-...+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 4556778888888888887765321111 12234556777888999999999888776533 2333445567788899
Q ss_pred CHHHHHHHHHHHHhCC
Q 035749 355 KMDKAHDLFLDMEAKG 370 (405)
Q Consensus 355 ~~~~A~~~~~~~~~~~ 370 (405)
+.++|+.-|++.+..+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999988874
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.83 E-value=3.6 Score=29.61 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=9.0
Q ss_pred HhcCCChHHHHHHHHHHHh
Q 035749 280 LCKNGYIVEALELFRTLRI 298 (405)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~ 298 (405)
+...|++.+|..+|+.+.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3444455555555544443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.74 E-value=11 Score=35.20 Aligned_cols=188 Identities=15% Similarity=0.082 Sum_probs=106.2
Q ss_pred HhHHHHHHhh-cCCCCChh--HHHHHHHHHH-hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHH
Q 035749 3 AAALFTKLKA-FGCEPNVI--TYSTLINGLC-RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDK 78 (405)
Q Consensus 3 A~~~~~~~~~-~~~~~~~~--~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (405)
|++.++-+.+ ..++|... ++..+...+. ...+++.|...+++........+. ...--..-..++..+.+.+...
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~-~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRL-TDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHHHHHhcCHHH-
Confidence 5667777773 33444333 4556666666 778899999999998665421000 0001123345566666666555
Q ss_pred HHHHHHHHHhCC----CCCChHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCccHhhHHHHHHHH--HcCCCHHH
Q 035749 79 AKELLLQMKDKN----INPDVVTYNSV-IRGFCYANDSNEAKRLFIEMMDQG---VQPNVVTFSVIMDEL--CKNGKMEE 148 (405)
Q Consensus 79 a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~~ 148 (405)
|...+++.++.- ..+-...|..+ +..+...++...|.+.++.+.... ..|....+-.++.+. ...+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888888876542 11223333333 333334479999999998886542 223333444444433 34565667
Q ss_pred HHHHHHHHHHcC---------CCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHH
Q 035749 149 ASQLLELMIQIG---------VRPNAFVYNTLMDG--FCLTGRVNRAKELFVSME 192 (405)
Q Consensus 149 a~~~~~~~~~~~---------~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~ 192 (405)
+.+.++.+.... ..|-..++..++.. +...|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777776663321 12345566666654 455677777777666653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.71 E-value=2.6 Score=31.45 Aligned_cols=109 Identities=15% Similarity=0.023 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhc---CChHHH-------HHHHHHHHhCCCCCChHHHHHHHHH
Q 035749 35 TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKE---GFVDKA-------KELLLQMKDKNINPDVVTYNSVIRG 104 (405)
Q Consensus 35 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a-------~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (405)
++.|.+.++.....+ |.|.+.++.-..++... .+..++ +.-|++.+..+ |....++..+..+
T Consensus 7 FE~ark~aea~y~~n-------P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA 78 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-------PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNA 78 (186)
T ss_dssp HHHHHHHHHHHHHH--------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-------cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 466777777766665 56677666555555443 333334 44444444432 2334666666666
Q ss_pred HHhcC----C-------HHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 105 FCYAN----D-------SNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 105 ~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
+...+ + +++|...|++.... .|+...|+.-+.... +|-++..++.+.
T Consensus 79 ~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 79 YTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 65443 2 34444444444443 566677766665542 344444444444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.68 E-value=2.7 Score=27.85 Aligned_cols=74 Identities=5% Similarity=-0.011 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCC--ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHH
Q 035749 273 YRTFIDGLCKNG--YIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMI 347 (405)
Q Consensus 273 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 347 (405)
+..-...+.... |.-+..+-++.+......|++.+..+.+++|.+.+++.-|.++|+.+..+. .+....|..++
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l 86 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence 333333444433 333567777788888888999999999999999999999999999876542 22222565555
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.61 E-value=2.3 Score=34.75 Aligned_cols=51 Identities=8% Similarity=0.065 Sum_probs=33.1
Q ss_pred CCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 319 GRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
-++++++.++..-++.|+.||..+++.++..+.+.+++.+|.++.-.|+..
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 355666666666666666667777777777777777766666665555543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.59 E-value=6.9 Score=35.35 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHH
Q 035749 271 WAYRTFIDGLCKNGYIVEALELFRTL 296 (405)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 296 (405)
.-+..+.++....+++..|.+.|.+.
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34444455555555555555544443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.36 E-value=2 Score=35.09 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=59.5
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC---CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG---CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV 236 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (405)
|.+....+...++.......+++.++..+-++.... ..++. +....++.+.+ -++++++.++..=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 334444455555555555666777777666665431 01111 11222333332 35567777776666677777777
Q ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 237 TYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
+++.++..+.+.+++..|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777776666544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.7 Score=35.93 Aligned_cols=91 Identities=14% Similarity=0.035 Sum_probs=55.9
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
...|.++|.+++|++.|.+.+... |.++.++..-..+|.+..++..|..-.......+ ..-+..|..-+.+-
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHH
Confidence 345677788888888887777654 3466677777777777777777766666555432 11233444444444
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 035749 106 CYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~ 124 (405)
...|...+|.+-++..+..
T Consensus 176 ~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHhhHHHHHHhHHHHHhh
Confidence 4556666666666665554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.28 E-value=7.4 Score=32.08 Aligned_cols=137 Identities=12% Similarity=-0.025 Sum_probs=78.3
Q ss_pred chhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhcCCCccHHHHHHHH
Q 035749 234 TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG-YIVEALELFRTLRILKCELDIRSYSCLI 312 (405)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 312 (405)
+..+-...+.++.+.++ +.+...+..+... ++..+-...+.++.+.+ +.+.+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444555566666665 3455555555542 34455555555555543 23455555555553 45666667777
Q ss_pred HHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 035749 313 DGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCI 386 (405)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 386 (405)
.++.+.|+. .|...+-...+.+ + .....+.++...|.. +|...+..+.+. .||..+-...+.+|.
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 777777774 4554444444431 2 234566677777774 677777777764 346666555555553
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.36 Score=26.36 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=11.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH
Q 035749 346 MIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 346 l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
+..+|...|+.+.|.+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 4445555555555555554443
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.45 Score=23.66 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCC
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
++..+..++.+.|++++|.+.|+++++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34567788889999999999999999875
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.18 E-value=8.4 Score=32.56 Aligned_cols=99 Identities=9% Similarity=-0.006 Sum_probs=69.0
Q ss_pred CCChhHHHHHHHHHHhcCc------------hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHH
Q 035749 16 EPNVITYSTLINGLCRTGH------------TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELL 83 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 83 (405)
|-|..+|..++..--..-. .+.-+.+++++++.+ +.+...+..++..+.+..+.+...+.+
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-------p~~~~L~l~~l~~~~~~~~~~~l~~~w 88 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-------PDSERLLLGYLEEGEKVWDSEKLAKKW 88 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5678889888865332211 345678899988875 567778888888888888888888888
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 035749 84 LQMKDKNINPDVVTYNSVIRGFCYA---NDSNEAKRLFIEMM 122 (405)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 122 (405)
+++.... +-+...|...+...... -.+.....+|.+.+
T Consensus 89 e~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 89 EELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 8888763 44677777777655442 24556666665554
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.00 E-value=11 Score=33.40 Aligned_cols=94 Identities=14% Similarity=0.077 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 035749 307 SYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALC--ADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLG 384 (405)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 384 (405)
.-+.++..+.+.|-..+|..++..+... ++|+...|..++..-. ..-+..-+..+++.|... +-.|+..|...+.-
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLWMDYMKE 539 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHHHHHHHh
Confidence 3456677777888899999999988776 5567777777765432 222377788888888765 23678888887777
Q ss_pred HHccCchhHHHHHHHHhh
Q 035749 385 CIRNNETSKVVELLHRMD 402 (405)
Q Consensus 385 ~~~~g~~~~a~~~~~~~~ 402 (405)
-...|..+.+-.++.+..
T Consensus 540 e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAM 557 (568)
T ss_pred hccCCCcccccHHHHHHH
Confidence 778888777766665543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.67 Score=23.29 Aligned_cols=30 Identities=27% Similarity=0.216 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCC
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
.+|..+...+...|++++|...|+++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467889999999999999999999998743
|
... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.54 E-value=28 Score=37.49 Aligned_cols=322 Identities=13% Similarity=0.054 Sum_probs=169.0
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD-AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVI 102 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (405)
.+..+-.+.+.+.+|+-.++.-..... .+.. ...+..+...|..-++++...-+...-.. +...+. -|
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek-----~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qi 1456 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEK-----EKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QI 1456 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HH
Confidence 455566788999999999998421110 1112 23344444599999999998888764221 223333 34
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHccCCH
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTL-MDGFCLTGRV 181 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~ 181 (405)
......|++..|...|+.+.+.+.. ...+++.++......|.++..+...+-..... .+....++.+ ..+.-+.+++
T Consensus 1457 l~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1457 LEHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcch
Confidence 4466789999999999999987432 46778878887778888888887666555442 3334444333 4455677788
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHH--HHHHHhhcC--ChHHHHHHHHHHHhCCC--------CC-chhhHHHHHHHHHcc
Q 035749 182 NRAKELFVSMESMGCKHNVFSYSI--LINGYCKNK--EIEGALSLYSEMLSKGI--------KP-TVVTYNTLFIGLFEI 248 (405)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~a~~~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~ 248 (405)
+.....+. .. +...|.. ++....+.. +.-.-.+..+.+.+.-+ .- =...|..++....-.
T Consensus 1535 D~~e~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1535 DLLESYLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhhhhhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 77777665 11 1222222 233333222 21111122222222110 10 012233333322211
Q ss_pred ccHHHHHHHHHHHHH-cCCCccHHHHHHHHHHHhcCCChHHHHHHHHH-HHhcCC-----CccHHHHHHHHHHHHhcCCH
Q 035749 249 HQVERAFKLFDEMQR-HGVAADTWAYRTFIDGLCKNGYIVEALELFRT-LRILKC-----ELDIRSYSCLIDGLCKSGRL 321 (405)
Q Consensus 249 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~-----~~~~~~~~~l~~~~~~~~~~ 321 (405)
.- +.-.+.+..... .....+...|..-+..-....+..+-+--+++ +..... .--...|...++.....|++
T Consensus 1608 el-~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1608 EL-ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HH-HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 11 000111100000 00001111111111111111111111111111 111111 12346788888888899999
Q ss_pred HHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 322 KIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
+.|...+-.+.+.. -+..+--.+......|+...|+.++++-.+.
T Consensus 1687 q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 99988776666543 3345666777788999999999999998865
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.71 Score=25.20 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhccCCC
Q 035749 310 CLIDGLCKSGRLKIAWELFHSLPRGV 335 (405)
Q Consensus 310 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 335 (405)
.++.+|...|+.+.|.++++++...+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47788899999999999988887643
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.37 E-value=0.97 Score=22.68 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666655
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.27 E-value=11 Score=32.32 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=32.2
Q ss_pred HHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 035749 25 LINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKD 88 (405)
Q Consensus 25 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 88 (405)
.+.+..+.|+++...+........ .++...+..+... ..++++++...++....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--------~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--------SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--------ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 456777888888844444444321 2334444444433 77888888888777654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.05 E-value=3.8 Score=31.67 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 64 TTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
+..++.+.+.++..+++...+.-.+.+ |.|...-..++..++-.|+|++|..-++-.-+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 344455556666666666666555543 44555566666666666666666655554433
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.95 E-value=17 Score=34.07 Aligned_cols=61 Identities=21% Similarity=0.079 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHhC
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF-------VDKAKELLLQMKDK 89 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 89 (405)
.|. +|-.|.+.|++++|.++....... .......+...+..+....+ -++...-|++..+.
T Consensus 114 ~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-------~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 114 IWA-LIYYCLRCGDYDEALEVANENRNQ-------FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHH-HHHHHHTTT-HHHHHHHHHHTGGG-------S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhh-------hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 454 677788999999999999555443 24445667777777766422 23444555555544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.77 E-value=4.4 Score=31.35 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG--VRPNAFVYNTLMDG 174 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 174 (405)
.+..+..+.+.+.+.+++...+.-.+..+. +...-..++..++-.|+|++|..-++.+-+.. ..+-...|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344556677788888888888777766433 66666778888888888888888777765542 22334556666554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.68 Score=22.98 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 63 YTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
+..+..++.+.|++++|.+.|+++.+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555555666666666666666554
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.57 E-value=0.79 Score=21.51 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=7.5
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 035749 311 LIDGLCKSGRLKIAWELF 328 (405)
Q Consensus 311 l~~~~~~~~~~~~a~~~~ 328 (405)
+..++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444433
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.52 E-value=8.9 Score=30.26 Aligned_cols=121 Identities=11% Similarity=-0.070 Sum_probs=75.6
Q ss_pred HHHccccHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHH
Q 035749 244 GLFEIHQVERAFKLFDEMQRHGVAADT-WAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLK 322 (405)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 322 (405)
-|.....++.|...|.+.+.. .|+. .-+..-+.++.+..+++.+..--.+.++.. +........+..+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhcccc
Confidence 355566788888888777765 3444 455666777778888888877777776653 333445566777777888888
Q ss_pred HHHHHHhhcc----CCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 323 IAWELFHSLP----RGVLIADVVTYNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 323 ~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
+|+..+.+.. +..+.+-...+..|..+--..=...+..++.++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 8888887763 33334444555555544333334445555554443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.48 E-value=2.9 Score=34.63 Aligned_cols=90 Identities=14% Similarity=0.042 Sum_probs=51.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (405)
.-|.++|.+++|++.|...+... +.|..++..-..+|.+...+..|+.-....+..+ ..-...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 34666777777777777666542 1266666666777777777776666666555443 222233444444444445555
Q ss_pred HHHHHHHHHHhc
Q 035749 183 RAKELFVSMESM 194 (405)
Q Consensus 183 ~a~~~~~~~~~~ 194 (405)
+|.+-++.....
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 555555555544
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=89.35 E-value=10 Score=30.70 Aligned_cols=126 Identities=13% Similarity=0.017 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-----C-CCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 035749 63 YTTIIDGLCKEGFVDKAKELLLQMKDKN-----I-NPD-------VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN 129 (405)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (405)
.....+.+.-..++..|++..++..+.= . .++ ......-|++++..|+|.+++.+.-+.-+.--+..
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 3333444445567777777766654320 0 111 11122346777788888888776655544322223
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HccCCHHHHHHHH
Q 035749 130 VVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF-----CLTGRVNRAKELF 188 (405)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~ 188 (405)
.......|-.|.+.+.+..+.++-..-++..-..+..-|..++..| .-.|.+++|+++.
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 4455556667778888877777777666543333334455555444 3457777777766
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.15 E-value=10 Score=30.46 Aligned_cols=202 Identities=11% Similarity=0.092 Sum_probs=102.0
Q ss_pred CCCCChHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCccHh---hHHHHHHHHHcCCCHHHHHHHHHHHHHc---CC-
Q 035749 90 NINPDVVTYNSVIRGF-CYANDSNEAKRLFIEMMDQGVQPNVV---TFSVIMDELCKNGKMEEASQLLELMIQI---GV- 161 (405)
Q Consensus 90 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 161 (405)
+..||+..-+..-.+- .+..++++|+.-|++.++.......+ +...++....+.+++++....+.+++.- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3355555443322211 23346778888888777653332332 3445667777788888887777776532 11
Q ss_pred -CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCCh----hhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC---
Q 035749 162 -RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM-GCKHNV----FSYSILINGYCKNKEIEGALSLYSEMLSKGIK--- 232 (405)
Q Consensus 162 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 232 (405)
.-+..+.+.++.......+.+-...+|+.-.+. .-..+. .+-..|...|...+++.+..+++.++....-.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 123445556665555555555555544432211 001111 12245666666677777777777666553111
Q ss_pred -Cc-------hhhHHHHHHHHHccccHHHHHHHHHHHHHc-CCCccHHHHHHHHH----HHhcCCChHHHHH
Q 035749 233 -PT-------VVTYNTLFIGLFEIHQVERAFKLFDEMQRH-GVAADTWAYRTFID----GLCKNGYIVEALE 291 (405)
Q Consensus 233 -~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~----~~~~~~~~~~a~~ 291 (405)
.| ...|..-++.|....+-.+...++++.+.. ..-|.+.....+-. ...+.|++++|..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 11 123444555566666666666666655432 12344444333322 2344566666543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.15 E-value=7.4 Score=29.19 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=5.7
Q ss_pred CCchhhHHHHHHH
Q 035749 232 KPTVVTYNTLFIG 244 (405)
Q Consensus 232 ~~~~~~~~~l~~~ 244 (405)
.|+...|+.-+..
T Consensus 110 ~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 110 DPNNELYRKSLEM 122 (186)
T ss_dssp -TT-HHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 4555555554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.64 E-value=19 Score=32.81 Aligned_cols=151 Identities=19% Similarity=0.125 Sum_probs=94.4
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN 109 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (405)
.-.|+++.|..++..+. -...+.++..+.++|-.++|+++- +|+... .....+.|
T Consensus 597 vmrrd~~~a~~vLp~I~-------------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lg 651 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLG 651 (794)
T ss_pred hhhccccccccccccCc-------------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcC
Confidence 34567776666444332 334566667777777777776542 222221 12244678
Q ss_pred CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 035749 110 DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV 189 (405)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (405)
+++.|.++..+.. +..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+-+....+-.
T Consensus 652 rl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 652 RLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred cHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 8888877766543 566788888888888888888888876653 3456666777777776666666
Q ss_pred HHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHH
Q 035749 190 SMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (405)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (405)
...+.| ..+. -..+|...|+++++.+++..-
T Consensus 717 ~~~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQG-KNNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhc-ccch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 666665 2222 233556678888887777554
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.20 E-value=23 Score=33.35 Aligned_cols=310 Identities=8% Similarity=-0.027 Sum_probs=141.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH-hhHHHHHHHHHcCCCHHH
Q 035749 70 LCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV-VTFSVIMDELCKNGKMEE 148 (405)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 148 (405)
..+.|++..+.++...+....+ ..-..|..+... ......++....+++.. -.|-. ..-...+..+.+.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQD-LMNQPAVQVTNFIRANP---TLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhc-cccCCHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHccCHHH
Confidence 4567888888777776643211 111222222221 11223444444433322 12222 222334445566778877
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH--HHHHHHHH
Q 035749 149 ASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG--ALSLYSEM 226 (405)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~ 226 (405)
....+. . .+.+...-.....+....|+.++|....+.+=-.| ...+...+.++..+.+.|.... ..+-++.+
T Consensus 118 ~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~a 191 (644)
T PRK11619 118 LLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLA 191 (644)
T ss_pred HHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 666331 1 14555555677778888898887776666654333 3445566667766665554332 22222222
Q ss_pred HhCCCCCchhhHHHHHHHHHc------------cccHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHhcCCChHHHHH
Q 035749 227 LSKGIKPTVVTYNTLFIGLFE------------IHQVERAFKLFDEMQRHGVAADTWA---YRTFIDGLCKNGYIVEALE 291 (405)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~ 291 (405)
...| +......+...+.. ..++..+...+. .++++... ....+.-+ ...+.+.|..
T Consensus 192 l~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rl-ar~d~~~A~~ 262 (644)
T PRK11619 192 MKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASV-ARQDAENARL 262 (644)
T ss_pred HHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHH-HHhCHHHHHH
Confidence 2222 11111122111100 011111111111 01122211 11112222 2345577777
Q ss_pred HHHHHHhcC-CCccH--HHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 292 LFRTLRILK-CELDI--RSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 292 ~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
++....... ..+.. .+...++......+...+|...+....... .+......-+..-...++++.+...+..|-.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~ 340 (644)
T PRK11619 263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPM 340 (644)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCH
Confidence 777653332 11111 122333333333322445555555544321 2333444444455567777777777776644
Q ss_pred CCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 369 KGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 369 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
. ..-...-.--+.+++...|+.++|...|+++.
T Consensus 341 ~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 341 E-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred h-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3 12222333344566666777777777777653
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.12 E-value=14 Score=30.57 Aligned_cols=60 Identities=7% Similarity=0.022 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH----HHHHHHHHHH
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS----NEAKRLFIEM 121 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~ 121 (405)
++..+....+..+...|. +.+...+..+... ++...-...+.++...|+. .++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 344455555555555553 3333334344332 3445555555555555542 3455555554
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=87.92 E-value=2.2 Score=26.73 Aligned_cols=56 Identities=11% Similarity=0.047 Sum_probs=40.8
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLL 84 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (405)
..++.| ..++.++|+..|+.+++...+ .+.--.++..++.+++..|++.++++.-.
T Consensus 12 ~GlkLY-~~~~~~~Al~~W~~aL~k~~~----~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 12 KGLKLY-HQNETQQALQKWRKALEKITD----REDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHh-ccchHHHHHHHHHHHHhhcCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345544 788899999999999987521 11123477888899999999998877643
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=87.78 E-value=19 Score=31.79 Aligned_cols=125 Identities=12% Similarity=0.081 Sum_probs=80.2
Q ss_pred HHHHHhcCChHHHHH-HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCC
Q 035749 67 IDGLCKEGFVDKAKE-LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGK 145 (405)
Q Consensus 67 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (405)
|.--...|+...|-+ ++..++.. +.++.............|+++.+...+...... +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 344445677666654 44444433 334444444445566788899888887665543 33356677788888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 035749 146 MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG 195 (405)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (405)
++.|...-..|+...+. ++.+.....-.....|-++++.-.++++...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999988888876543 33443333334455677888888888887665
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=87.76 E-value=13 Score=30.09 Aligned_cols=132 Identities=11% Similarity=0.052 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc-------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD-------AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD 94 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (405)
...-.+.+.-..||..|++..++..+.-......-.+. ......=|++++..++|.+++...-+.-+.--+..
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP 117 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC
Confidence 33444556667899999999988776431110000111 11233447889999999999988766654422334
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH-----HcCCCHHHHHHHH
Q 035749 95 VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL-----CKNGKMEEASQLL 153 (405)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~ 153 (405)
+.+...-|-.|.+.+.+..+.++-...++..-.-+..-|..++..| .-.|.+++|+++.
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 5666677778999999999999988887753333344466666555 4579999999887
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.66 E-value=12 Score=29.53 Aligned_cols=85 Identities=13% Similarity=-0.060 Sum_probs=47.2
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYA 108 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (405)
|.....+..|+.-|.+++..+ |..+.-|..-+.++.+..+++.+..--.+.++.. +..+.....+..+....
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n-------P~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN-------PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQS 91 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC-------CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhh
Confidence 334455666666666666643 2233455566666666666666666655555541 22233344455555566
Q ss_pred CCHHHHHHHHHHH
Q 035749 109 NDSNEAKRLFIEM 121 (405)
Q Consensus 109 ~~~~~a~~~~~~~ 121 (405)
..+++|+..+.+.
T Consensus 92 ~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 92 KGYDEAIKVLQRA 104 (284)
T ss_pred ccccHHHHHHHHH
Confidence 6666666666655
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.27 E-value=0.24 Score=35.94 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=49.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCC
Q 035749 66 IIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGK 145 (405)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (405)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..+.++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 44555556677777777777776554556777777777777776666666655511 11222345566666666
Q ss_pred HHHHHHHHHHH
Q 035749 146 MEEASQLLELM 156 (405)
Q Consensus 146 ~~~a~~~~~~~ 156 (405)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.94 E-value=16 Score=30.27 Aligned_cols=51 Identities=10% Similarity=-0.068 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 035749 74 GFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY----ANDSNEAKRLFIEMMDQGVQ 127 (405)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 127 (405)
.+...|.++|....+.| .+.....|...+.. ..+..+|..+|++..+.|..
T Consensus 91 ~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 91 RDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred ccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh
Confidence 34555666666555444 22333334444433 22556666666666655544
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.69 E-value=16 Score=29.88 Aligned_cols=115 Identities=10% Similarity=0.058 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHh-CCCCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHH-CCCCccHhhHHHHHHHHHcCCCHHHHH
Q 035749 75 FVDKAKELLLQMKD-KNINPDVVTYNSVIRGFCYAN--DSNEAKRLFIEMMD-QGVQPNVVTFSVIMDELCKNGKMEEAS 150 (405)
Q Consensus 75 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (405)
...+|+.+|+..-. ..+-.|..+...+++...... ....-.++.+-+.. .+..++..+...++..++..++|.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35566666663211 223446666666766665522 12222222222322 234556666667777777777777777
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 035749 151 QLLELMIQI-GVRPNAFVYNTLMDGFCLTGRVNRAKELFV 189 (405)
Q Consensus 151 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (405)
++++..... +...|...|..+++.....|+..-..++..
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 777766554 445566677777777777777655555444
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.26 E-value=0.61 Score=38.39 Aligned_cols=88 Identities=20% Similarity=0.143 Sum_probs=40.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHH
Q 035749 73 EGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQL 152 (405)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (405)
.|.++.|++.|...+..+ ++....|..-...+.+.+.+..|++-+...+..+.. +..-|-.--.+....|+|+++.+.
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHH
Confidence 344555555555555443 334444444445555555555555555544443211 112222222333334555555555
Q ss_pred HHHHHHcCCC
Q 035749 153 LELMIQIGVR 162 (405)
Q Consensus 153 ~~~~~~~~~~ 162 (405)
+....+.++.
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 5555555443
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.10 E-value=17 Score=29.60 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=15.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHH
Q 035749 204 SILINGYCKNKEIEGALSLYSEM 226 (405)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~ 226 (405)
..++..+.+.|.+.+|+.+...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 34667777888888877766544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.07 E-value=17 Score=29.69 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 035749 134 SVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 191 (405)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (405)
....+.|...|.+.+|.++.++.+..+ +.+...+..++..+...|+--.+.+-++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344455666666666666666666554 555555666666666666655555555544
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=85.87 E-value=8 Score=25.64 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=49.6
Q ss_pred chHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHH
Q 035749 34 HTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNE 113 (405)
Q Consensus 34 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (405)
..++|..+-+.+...+ .....+-..-+..+...|++++|..+.+.+ ..||...|..|.. .+.|--.+
T Consensus 20 cHqEA~tIAdwL~~~~-------~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~ 86 (115)
T TIGR02508 20 CHQEANTIADWLHLKG-------ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSA 86 (115)
T ss_pred HHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHH
Confidence 3566766666665432 111222222334566788888888877655 2567777766544 35666666
Q ss_pred HHHHHHHHHHCCCCccHhhH
Q 035749 114 AKRLFIEMMDQGVQPNVVTF 133 (405)
Q Consensus 114 a~~~~~~~~~~~~~~~~~~~ 133 (405)
+...+..+-..|. |....|
T Consensus 87 l~~rl~rla~sg~-p~lq~F 105 (115)
T TIGR02508 87 LESRLNRLAASGD-PRLQTF 105 (115)
T ss_pred HHHHHHHHHhCCC-HHHHHH
Confidence 7777767766653 344444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.48 E-value=33 Score=32.30 Aligned_cols=195 Identities=14% Similarity=0.155 Sum_probs=112.0
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccc--cHHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCC
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKP--DAVIYTTIIDGLC-KEGFVDKAKELLLQMKDKNINPD 94 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~ 94 (405)
+...|..+|. .|+.-++.+.+... .+| ...++..++..+. ...+++.|...+++.....-.++
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~-----l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~ 94 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFK-----LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHR 94 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCC-----CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 4445666654 45667777764321 344 3446777777777 67899999999998765432322
Q ss_pred hH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCccHhhHHHH-HHHHHcCCCHHHHHHHHHHHHHcC---C
Q 035749 95 VV-----TYNSVIRGFCYANDSNEAKRLFIEMMDQ----GVQPNVVTFSVI-MDELCKNGKMEEASQLLELMIQIG---V 161 (405)
Q Consensus 95 ~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~ 161 (405)
.. +...++..+.+.+... |...+++.++. +..+-...|..+ +..+...+++..|.+.++.+.... .
T Consensus 95 ~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~ 173 (608)
T PF10345_consen 95 LTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG 173 (608)
T ss_pred hHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC
Confidence 21 2234566666666555 88888887654 122223333333 223333479999999998876642 2
Q ss_pred CCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHhcC---------CCCChhhHHHHHHHH--hhcCChHHHHHHHHHHH
Q 035749 162 RPNAFVYNTLMDG--FCLTGRVNRAKELFVSMESMG---------CKHNVFSYSILINGY--CKNKEIEGALSLYSEML 227 (405)
Q Consensus 162 ~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 227 (405)
.+-..++..++.+ ....+..+++.+.++.+.... ..|...+|..++..+ ...|+++.+...++++.
T Consensus 174 d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 174 DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444443 344565677777777663321 123455666666554 45677667666655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.16 E-value=18 Score=29.13 Aligned_cols=190 Identities=13% Similarity=0.112 Sum_probs=117.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChH---HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CccHhhHHHHHHHHHcC
Q 035749 72 KEGFVDKAKELLLQMKDKNINPDVV---TYNSVIRGFCYANDSNEAKRLFIEMMDQ---GV--QPNVVTFSVIMDELCKN 143 (405)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~ 143 (405)
+...+++|+.-|++..+....-..+ +...++....+.+++++....|.+++.. .+ .-+....+.++..-+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 4467899999999988763222333 3445678888999999999988888642 11 12445566666666655
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC-----------CCChhhHHHHH
Q 035749 144 GKMEEASQLLELMIQI-----GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGC-----------KHNVFSYSILI 207 (405)
Q Consensus 144 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~ 207 (405)
.+.+....+++.-+.. +-..--.+-..+...|...+++.+..++++++...-- ..-...|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 5655555554433221 0011112334677888888999999999888865311 11234677778
Q ss_pred HHHhhcCChHHHHHHHHHHHhC-CCCCchhhHHHHH----HHHHccccHHHHHHHHHHH
Q 035749 208 NGYCKNKEIEGALSLYSEMLSK-GIKPTVVTYNTLF----IGLFEIHQVERAFKLFDEM 261 (405)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~ 261 (405)
+.|...++-.....+|++.+.. ..-|.+.....+- ....+.|++++|..-|-++
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 8888888888888888876542 2234444333221 2234667888776544433
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.08 E-value=22 Score=30.07 Aligned_cols=99 Identities=9% Similarity=-0.011 Sum_probs=56.0
Q ss_pred cccHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 57 KPDAVIYTTIIDGLCKEGF------------VDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
|.|..+|..++..--..-. .+.-+.+++++.+.+ +.+...+..++..+.+..+.++..+-++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6678888888765433211 344556666666653 445566666666666666666666677777665
Q ss_pred CCCccHhhHHHHHHHHHc---CCCHHHHHHHHHHHH
Q 035749 125 GVQPNVVTFSVIMDELCK---NGKMEEASQLLELMI 157 (405)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 157 (405)
.+. +...|...+..... .-.++....+|.+.+
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 322 45555555544332 223455555554443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.73 E-value=20 Score=29.32 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 343 YNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
++.....|..+|.+.+|.++.++.+.. -+.+...+..++..+...|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 444555666777777777777777664 23455566666677777777666666666553
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=84.57 E-value=8.4 Score=26.79 Aligned_cols=44 Identities=5% Similarity=-0.009 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 035749 289 ALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
..+-++.+...++.|++.+....+++|.+.+++..|.++|+-+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555555444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.01 E-value=39 Score=31.96 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=67.5
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
++.+.+.+.+++|+++-+.....-+. -.-.......|..+.-.|++++|-...-.|... +..-|...+..+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~-----~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f 433 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEER-----FVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKF 433 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccc-----cchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHh
Confidence 56677888999998888776554210 013567788888888999999999888888764 566676666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK 142 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (405)
...++......+ +.......+...|..++..+..
T Consensus 434 ~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 434 AELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 666654433222 2222222345566666666554
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=83.93 E-value=4 Score=25.63 Aligned_cols=46 Identities=7% Similarity=0.065 Sum_probs=24.9
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCchhHHHHH
Q 035749 352 ADGKMDKAHDLFLDMEAKGVAPD--CVAFNTLMLGCIRNNETSKVVEL 397 (405)
Q Consensus 352 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 397 (405)
...+.++|+..|+..++.-..+. ..++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666665422211 12444555666666666665554
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.60 E-value=32 Score=30.75 Aligned_cols=178 Identities=15% Similarity=0.169 Sum_probs=87.8
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 035749 93 PDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLM 172 (405)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (405)
.|.....+++..+..+..+.-...+..+|+..| .+...+..++.+|... ..+.-..+|+++.+..+ .|+..-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 344555556666666666666666666666543 2455566666666655 44555666666665532 1222233333
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCC-----ChhhHHHHHHHHhhcCChHHHHHHHHHHHhC-CCCCchhhHHHHHHHHH
Q 035749 173 DGFCLTGRVNRAKELFVSMESMGCKH-----NVFSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPTVVTYNTLFIGLF 246 (405)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 246 (405)
..|.+ ++.+.+...|.++...-++. -...|..+.... ..+.+..+.+..++... |...-...+..+...|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33333 55566666666655432221 111333333211 23445555555544432 22223334444445555
Q ss_pred ccccHHHHHHHHHHHHHcCCCccHHHHHHHHH
Q 035749 247 EIHQVERAFKLFDEMQRHGVAADTWAYRTFID 278 (405)
Q Consensus 247 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 278 (405)
...++.+|++++..+.+++ ..|......++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 6666666666666666554 344444444443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.29 E-value=33 Score=30.67 Aligned_cols=180 Identities=11% Similarity=0.101 Sum_probs=124.3
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.+......++..+..+..+.-...+..+|...| -+-..|..++.+|... ..++-..+++++.+..+. +...-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4566677788888888888888888999998875 4678888999999888 567788899988887554 44444455
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHH
Q 035749 137 MDELCKNGKMEEASQLLELMIQIGVRP--N---AFVYNTLMDGFCLTGRVNRAKELFVSMESM-GCKHNVFSYSILINGY 210 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 210 (405)
+..|- .++.+.+...|.++...-++. + ...|..+... -..+.+....+...+... |...-...+.-+-.-|
T Consensus 139 a~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 55554 488899999999887663321 1 2244444431 234677777777777543 3333455666666788
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 035749 211 CKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIG 244 (405)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (405)
....++++|++++..+.+.+ ..|...-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 88999999999999988874 2344444444443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.72 E-value=9 Score=34.57 Aligned_cols=87 Identities=18% Similarity=0.189 Sum_probs=41.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHH
Q 035749 142 KNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALS 221 (405)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 221 (405)
-.|+...|.+.+.................|.+...+.|....|..++.+..... ...+.++..+.+++.-..+.+.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 345555555555544432111111222334444444455555555555544443 2334444555555555556666666
Q ss_pred HHHHHHhC
Q 035749 222 LYSEMLSK 229 (405)
Q Consensus 222 ~~~~~~~~ 229 (405)
.|++..+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 66655554
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=82.13 E-value=3 Score=19.78 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCC
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGN 49 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 49 (405)
.+|..+...+...|+++.|...|+..++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 357788889999999999999999988754
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=81.93 E-value=26 Score=28.53 Aligned_cols=28 Identities=25% Similarity=0.062 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 035749 303 LDIRSYSCLIDGLCKSGRLKIAWELFHS 330 (405)
Q Consensus 303 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 330 (405)
-++.....++..|.+.|++.+|...|-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3667778888888888988888877643
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.35 E-value=43 Score=30.52 Aligned_cols=164 Identities=10% Similarity=-0.014 Sum_probs=98.2
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCccc-----ccccHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hCCC------
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVV-----CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMK-------DKNI------ 91 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~------ 91 (405)
.+.+.+++|...|.-+.......++. .|-...+...+..++..+|+.+.+-+++++.+ ...+
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 34567788888888887765433221 23456677788888889999887777666542 2111
Q ss_pred -------CCChHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH-cCCCHHHHHHHHHHHHHcC
Q 035749 92 -------NPDVVTYNSV---IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC-KNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 92 -------~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~ 160 (405)
+-|...|.+| ++.+.+.|-+..|.++.+-+.+..+.-|+.....++..|+ +..++.-.+++++.....+
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 1123333333 3445677888888888888877765556666666777664 5566777777766654332
Q ss_pred ---CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHh
Q 035749 161 ---VRPNAFVYNTLMDGFCLTGR---VNRAKELFVSMES 193 (405)
Q Consensus 161 ---~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 193 (405)
.-|+...-.+++..|..... -..|...+.++..
T Consensus 409 ~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 409 KLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred cHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 23444444455555555544 3344444444443
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.30 E-value=9.6 Score=29.32 Aligned_cols=51 Identities=18% Similarity=0.068 Sum_probs=33.8
Q ss_pred hcCCHHHHH---HHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 317 KSGRLKIAW---ELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 317 ~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
...+.+... +..++..+ ..|++.+|..++.++...|+.++|.+..+++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444333 33344444 3578888888888888888888888888887764
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=80.77 E-value=17 Score=25.44 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=44.1
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHH
Q 035749 4 AALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTII 67 (405)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 67 (405)
.+.++.+...++-|++.....-++++.+-+|+..|+.+|+-+...- .+.-..|-.++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-------g~~k~~Y~y~v 125 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-------GAQKQVYPYYV 125 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-------ccHHHHHHHHH
Confidence 3455666677888999999999999999999999999999987653 34334455554
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.33 E-value=43 Score=29.92 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh--cCCHHHHHHHHhhccCCCcCccHHHHHHHHHH
Q 035749 272 AYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCK--SGRLKIAWELFHSLPRGVLIADVVTYNIMIHA 349 (405)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (405)
.-+.++..+.+.|-..+|...+..+.... ||+...+..+++.-.. .-+...+..+++.+...- -.|+..|-..+..
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f-g~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF-GADSDLWMDYMKE 539 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh-CCChHHHHHHHHh
Confidence 34556677778889999999999998875 7788888888775322 223777888888876542 2588889888887
Q ss_pred HHcCCCHHHHHHHHHHHHhC
Q 035749 350 LCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 350 ~~~~g~~~~A~~~~~~~~~~ 369 (405)
-...|+.+.+-.++.++.+.
T Consensus 540 e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred hccCCCcccccHHHHHHHHh
Confidence 77899999888888777664
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.22 E-value=43 Score=29.85 Aligned_cols=110 Identities=14% Similarity=0.010 Sum_probs=69.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHhC---CC--CCc---hhhHHHHHHHHHccccHHHHHHHHHHHHH-------cCCCccH-
Q 035749 207 INGYCKNKEIEGALSLYSEMLSK---GI--KPT---VVTYNTLFIGLFEIHQVERAFKLFDEMQR-------HGVAADT- 270 (405)
Q Consensus 207 ~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~- 270 (405)
-+.+.-.|++.+|.+++...--. |. .|. -..++.+.-.+.+.+.+..+..+|.+..+ .|+.|.+
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 34566678999998887654221 21 121 11235566566677777777777766653 3433321
Q ss_pred ---------HHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh
Q 035749 271 ---------WAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCK 317 (405)
Q Consensus 271 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (405)
.......-.|...|++-.|.+.|......- ..++..|..++.+|..
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence 223334456778899999999998887653 5678889999888864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 92.2 bits (227), Expect = 4e-20
Identities = 22/212 (10%), Positives = 59/212 (27%), Gaps = 4/212 (1%)
Query: 110 DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYN 169
A L P + ++ E ++ Q +
Sbjct: 72 SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL 131
Query: 170 TLMDGFCLTGRVNRAKELFVSMESMGCKH---NVFSYSILINGYCKNKEIEGALSLYSEM 226
LT ++ A L V K + Y+ ++ G+ + + + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 227 LSKGIKPTVVTYNTLFIGLFEIHQVERAF-KLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285
G+ P +++Y + Q + ++M + G+ + +
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 286 IVEALELFRTLRILKCELDIRSYSCLIDGLCK 317
+ ++ T + + S L+ +
Sbjct: 252 LKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.0 bits (211), Expect = 3e-18
Identities = 23/219 (10%), Positives = 58/219 (26%), Gaps = 4/219 (1%)
Query: 79 AKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138
A L + +P +++ + + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 139 ELCKNGKMEEASQLLEL---MIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG 195
++ A LL + Q +YN +M G+ G + ++ G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 196 CKHNVFSYSILINGYCKNKEIEGALSLY-SEMLSKGIKPTVVTYNTLFIGLFEIHQVERA 254
++ SY+ + + + G + +M +G+K + L ++
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 255 FKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELF 293
K+ + + V +L
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 85.3 bits (209), Expect = 5e-18
Identities = 22/200 (11%), Positives = 65/200 (32%), Gaps = 4/200 (2%)
Query: 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDA 60
A + T +A +L + +
Sbjct: 109 DVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL---LTL 165
Query: 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEA-KRLFI 119
+Y ++ G ++G + +L +KD + PD+++Y + ++ + +R
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE 225
Query: 120 EMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTG 179
+M +G++ + +V++ E + ++ ++ P + L+
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285
Query: 180 RVNRAKELFVSMESMGCKHN 199
+L + ++++ C
Sbjct: 286 GRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.5 bits (189), Expect = 2e-15
Identities = 20/226 (8%), Positives = 55/226 (24%), Gaps = 4/226 (1%)
Query: 184 AKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFI 243
A L + L+ ++ + + + F
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 244 GLFEIHQVERAFKLFD---EMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK 300
Q+ A L ++ Y + G + G E + + ++
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 301 CELDIRSYSCLIDGLCKSGR-LKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKA 359
D+ SY+ + + + + + + L + +++ +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 360 HDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN 405
H + P V + L+ + +L +
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQ 301
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 5e-08
Identities = 55/435 (12%), Positives = 121/435 (27%), Gaps = 134/435 (30%)
Query: 16 EPNVITYS-TLINGLCRTGHTIVALNLFEEMINGNGEF-----GVVCK---PDAVIYTTI 66
+ ++ + L L +V EE++ N +F + +Y
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQ-KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 67 IDGLCKEG--F----------VDKAKELLLQMKDKNINPDVVTYNSVIRGF---CYANDS 111
D L + F K ++ LL+++ +V+ + G A D
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP---AKNVLIDG--VLGSGKTWVALDV 170
Query: 112 NEAKRLFIEMMDQGV---------QPNVVT------FSVIMDELCKNG--------KMEE 148
+ + MD + P V I ++
Sbjct: 171 CLSYK-VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 149 ASQLLELMIQIGVRPNAF-----VYN-TLMDGF---C---LTGRVNRAKELFVSMESMGC 196
L +++ N V N + F C LT R K++ + +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT---TRFKQVTDFLSAATT 286
Query: 197 KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFK 256
H S E++ L Y + + + V+T N + + A
Sbjct: 287 TH--ISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-------AES 336
Query: 257 LFDEMQRHGVAADTWAY----------RTFIDGL----CKNGYIVEALELFR-------- 294
+ D + D W + + ++ L + + + L +F
Sbjct: 337 IRDGLAT----WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF--DRLSVFPPSAHIPTI 390
Query: 295 TLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADG 354
L ++ ++ +++ L K ++ + T +I
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-------------TISI--------- 428
Query: 355 KMDKAHDLFLDMEAK 369
++L+++ K
Sbjct: 429 -----PSIYLELKVK 438
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 2e-07
Identities = 50/385 (12%), Positives = 109/385 (28%), Gaps = 123/385 (31%)
Query: 109 NDSNEAKRLFIEMMDQG---------------------------VQPNVVT--FSVIMDE 139
+ + RLF ++ + QP+++T + D
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 140 LCKNGKM---------EEASQLLELMIQIGVRPNAFVYNTLMDGF---CLTGRVNRAKEL 187
L + ++ + +L + ++++ N + + G + V + ++
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--VLGSGKTWVALDVCLSYKV 176
Query: 188 FVSMESMGCKHNVFSYSILINGYCKNKE--IEGALSLYSEMLSKGIKPTVVTYNTLFIGL 245
M+ +F ++ C + E +E L ++ + + N
Sbjct: 177 QCKMDF-----KIFWLNL---KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI----K 224
Query: 246 FEIHQVERAFKLFDEMQRHGVA-------ADTWAYRTFIDGLCK------NGYIVEALEL 292
IH ++ + + + + + A+ F + CK + + L
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSA 283
Query: 293 FRTLRILKCELDIRSYSCLIDGLCKSGRL----KIAWELFHSLPRGV------LIADVVT 342
T I LD S L K LPR V ++
Sbjct: 284 ATTTHI---SLDHHS-----MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---- 331
Query: 343 YNIMIHALCADG-------------KMDKAHDLFLDM----EAKGVAPDCVAFN------ 379
+I DG K+ + L++ E + + F
Sbjct: 332 ---IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 380 --TLML--GCIRNNETSKVVELLHR 400
L L + ++ VV LH+
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHK 413
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 7e-04
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 32/169 (18%)
Query: 249 HQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY--IVEALELFRTLRILKCELDIR 306
V +LF + + F++ + + Y ++ ++ + + R
Sbjct: 59 DAVSGTLRLFWTLLSKQ----EEMVQKFVEEVLRINYKFLMSPIK----TEQRQPSMMTR 110
Query: 307 SYSCLIDGLCKSG---------RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMD 357
Y D L RL+ +L R L+ N++I + GK
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-----RQALLELRPAKNVLIDGVLGSGKTW 165
Query: 358 KAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVE----LLHRMD 402
A D+ L + + + + L L N V+E LL+++D
Sbjct: 166 VALDVCLSYKVQCKMDFKIFW--LNLK--NCNSPETVLEMLQKLLYQID 210
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 405 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.98 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.94 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.93 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.93 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.92 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.92 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.91 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.9 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.9 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.89 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.89 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.89 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.87 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.84 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.83 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.82 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.81 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.81 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.8 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.78 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.78 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.78 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.78 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.78 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.77 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.77 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.77 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.77 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.75 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.75 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.74 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.73 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.73 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.72 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.71 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.71 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.7 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.7 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.69 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.69 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.68 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.67 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.64 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.64 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.62 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.62 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.61 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.59 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.59 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.58 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.58 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.57 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.55 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.49 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.49 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.44 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.43 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.42 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.42 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.42 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.4 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.4 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.39 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.38 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.36 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.36 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.36 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.36 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.35 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.34 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.34 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.33 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.33 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.32 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.32 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.31 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.31 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.3 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.3 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.3 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.24 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.24 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.23 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.17 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.15 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.15 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.13 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.13 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.13 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.11 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.1 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.09 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.08 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.07 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.07 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.07 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.07 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.06 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.05 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.03 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.03 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.02 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.02 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.01 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.0 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.0 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.0 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.0 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.0 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.0 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.0 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.99 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.99 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.98 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.98 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.97 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.97 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.97 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.97 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.96 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.95 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.93 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.91 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.9 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.88 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.85 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.85 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.85 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.83 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.83 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.82 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.82 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.82 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.79 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.75 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.75 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.75 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.74 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.72 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.72 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.69 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.68 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.68 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.66 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.66 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.66 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.61 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.61 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.61 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.58 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.57 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.57 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.55 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.54 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.53 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.53 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.51 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.5 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.5 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.48 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.47 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.38 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.38 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.37 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.35 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.35 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.33 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.3 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.29 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.28 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.28 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.2 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.18 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.11 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.09 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.01 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.0 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.91 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.74 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.68 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.6 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.6 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.6 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.51 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.5 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.41 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.39 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.39 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.31 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.24 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.17 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.02 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.01 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.95 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.9 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.9 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.87 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.7 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.57 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.51 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.44 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.28 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.24 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.98 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.82 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.45 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.07 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.94 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.92 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.7 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.65 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.52 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.4 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.29 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.23 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.18 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.86 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.46 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.08 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.82 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.49 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 92.48 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.01 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.01 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.78 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.53 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 89.93 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.48 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 89.46 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 89.43 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 87.84 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.37 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.27 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 86.86 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.32 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 82.81 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.24 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.85 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=290.16 Aligned_cols=387 Identities=14% Similarity=0.007 Sum_probs=308.8
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|+.+|+.+... .|+..++..++.+|.+.|++++|+.+|+++.. .+++..+++.++.+|.+.|++++|.+
T Consensus 102 ~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~ 171 (597)
T 2xpi_A 102 CAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--------YNRSSACRYLAAFCLVKLYDWQGALN 171 (597)
T ss_dssp HHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--------GGTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--------cccchhHHHHHHHHHHHHhhHHHHHH
Confidence 577777777754 45667777777778888888888888777654 34667777777777777777777777
Q ss_pred HHHHHHhC---------------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--------------------
Q 035749 82 LLLQMKDK---------------NINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGV-------------------- 126 (405)
Q Consensus 82 ~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------- 126 (405)
+|+++... +.+++..+|+.++.+|.+.|++++|.++|+++.+.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 251 (597)
T 2xpi_A 172 LLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEE 251 (597)
T ss_dssp HHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHH
T ss_pred HHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhH
Confidence 77742211 1223467777777777777777777777777754332
Q ss_pred --------------------------------------------------CccHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 127 --------------------------------------------------QPNVVTFSVIMDELCKNGKMEEASQLLELM 156 (405)
Q Consensus 127 --------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (405)
+++..++..++..|.+.|++++|..+|+++
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (597)
T 2xpi_A 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI 331 (597)
T ss_dssp HHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 256667777788888888888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchh
Q 035749 157 IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVV 236 (405)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 236 (405)
.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..
T Consensus 332 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 408 (597)
T 2xpi_A 332 LEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGP 408 (597)
T ss_dssp HHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHH
Confidence 8765 4567778888888888888888888888887654 5678888999999999999999999999988753 34577
Q ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 035749 237 TYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLC 316 (405)
Q Consensus 237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (405)
++..++.++.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..++..++..|.
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 88999999999999999999999998875 5678888999999999999999999999998775 567888999999999
Q ss_pred hcCCHHHHHHHHhhccCC----CcCcc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc
Q 035749 317 KSGRLKIAWELFHSLPRG----VLIAD--VVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNE 390 (405)
Q Consensus 317 ~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (405)
+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..++.+|.+.|+
T Consensus 487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC
Confidence 999999999999988664 44566 7899999999999999999999999998864 4578899999999999999
Q ss_pred hhHHHHHHHHhhhc
Q 035749 391 TSKVVELLHRMDER 404 (405)
Q Consensus 391 ~~~a~~~~~~~~~~ 404 (405)
+++|.+.++++.+.
T Consensus 566 ~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 566 PGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988753
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=277.01 Aligned_cols=372 Identities=12% Similarity=0.030 Sum_probs=287.6
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChH
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVV 96 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (405)
++...|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+++... ++++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 151 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--------TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSA 151 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--------CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchh
Confidence 57788999999999999999999999999863 467788999999999999999999999998654 67899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQ---------------GVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.+.
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999953322 2234688999999999999999999999999876541
Q ss_pred ----------------------------------------------------------------------CCCHHHHHHH
Q 035749 162 ----------------------------------------------------------------------RPNAFVYNTL 171 (405)
Q Consensus 162 ----------------------------------------------------------------------~~~~~~~~~l 171 (405)
+++..++..+
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 311 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHH
Confidence 1344555556
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccH
Q 035749 172 MDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQV 251 (405)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (405)
+.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.... +.+..++..++..|.+.|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 666666666666666666666554 3455566666666666666666666666665432 34566777777778888888
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 035749 252 ERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSL 331 (405)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 331 (405)
++|..+|+++.+.. +.+..++..++.++.+.|++++|.++|+++.... +.+..++..++.+|...|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888777653 4456777788888888888888888888877664 556777788888888888888888888887
Q ss_pred cCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 332 PRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK----GVAPD--CVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 332 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6542 236777888888888888888888888888765 55666 67788888888888888888888887765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=239.16 Aligned_cols=372 Identities=15% Similarity=0.065 Sum_probs=301.2
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|++.++.+.+.. |.+...+..+...+...|++++|...++.+++.. |.+..+|..++..+.+.|++++|+
T Consensus 16 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-------p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 16 EAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHCCCHHHHH
Confidence 36788888887764 4456677778888888899999999998888765 567888899999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
..|+++.+.. |.+..+|..++.++...|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+++.+..
T Consensus 88 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999888764 456677888888899999999999999888876433 45667778888888899999999998888774
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHH
Q 035749 161 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNT 240 (405)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (405)
+.+..++..+..++...|++++|...|+++.+.+ +.+...+..+...+...|++++|+..+++..... +.+..++..
T Consensus 166 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 242 (388)
T 1w3b_A 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGN 242 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHH
Confidence 5567788888888999999999999999888875 5567788888888889999999999998887753 335677788
Q ss_pred HHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 035749 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR 320 (405)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (405)
+...+...|++++|...++++.+.+ +.++.++..+..++.+.|++++|...++++.+.. +.+..++..++..+...|+
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCC
Confidence 8888889999999999999888864 5567788888888888999999999999888775 6778888888889999999
Q ss_pred HHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 035749 321 LKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNN 389 (405)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (405)
+++|...++++.+. .+.+..++..++.++.+.|++++|...++++.+. .+.+...+..+...+...|
T Consensus 321 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 321 IEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHhHHHHHHHcc
Confidence 99999999888775 2335778888888899999999999999988875 2335667777777666554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-33 Score=239.29 Aligned_cols=364 Identities=13% Similarity=0.063 Sum_probs=324.2
Q ss_pred HHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 035749 25 LINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRG 104 (405)
Q Consensus 25 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (405)
+...+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++...+.. |.+..+|..+...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 4567789999999999999999875 5667888899999999999999999999988764 6788999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
+.+.|++++|...|+++.+..+ .+..++..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 9999999999999999988643 356789999999999999999999999999875 55667788899999999999999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 185 KELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
...|+++.+.. +.+..+|..+...+...|++++|+..|+++...+ +.+...+..+...+...|++++|...+.+....
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999998875 5578899999999999999999999999999864 345678888999999999999999999999887
Q ss_pred CCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHH
Q 035749 265 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYN 344 (405)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 344 (405)
. +.+..++..+..++...|++++|...++++.... +.+..++..++.++...|++++|...|+++.+. .+.+..++.
T Consensus 233 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~ 309 (388)
T 1w3b_A 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHH
Confidence 4 5568889999999999999999999999999875 567888999999999999999999999998875 345788999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 345 IMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 345 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
.++..+...|++++|...++++.+. .+.+..++..++.++.+.|++++|...++++.+.
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999986 3556888999999999999999999999998753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=233.07 Aligned_cols=207 Identities=16% Similarity=0.159 Sum_probs=181.8
Q ss_pred HHHHHHHHHHcCCCCCccccccc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC-----
Q 035749 37 VALNLFEEMINGNGEFGVVCKPD-AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAND----- 110 (405)
Q Consensus 37 ~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 110 (405)
.+..+.+++.+.+ .... ...++.+|..|++.|++++|+++|++|.+.|++||..+|+.||.+|.+.+.
T Consensus 8 ~~e~L~~~~~~k~------~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~ 81 (501)
T 4g26_A 8 PSENLSRKAKKKA------IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS 81 (501)
T ss_dssp ----------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS
T ss_pred hHHHHHHHHHHhc------ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh
Confidence 3445556666555 3333 346888999999999999999999999999999999999999999987654
Q ss_pred ----HHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 035749 111 ----SNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKE 186 (405)
Q Consensus 111 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (405)
+++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 82 ~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 82 PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccc
Q 035749 187 LFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIH 249 (405)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (405)
+|++|.+.|+.||..+|+.|+.+|++.|+.++|.+++++|.+.+..|+..||+.++..|...+
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999998887643
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=231.77 Aligned_cols=205 Identities=14% Similarity=0.196 Sum_probs=182.2
Q ss_pred HhHHHHHHhhcCCCCChh-HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC------
Q 035749 3 AAALFTKLKAFGCEPNVI-TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF------ 75 (405)
Q Consensus 3 A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 75 (405)
+..+.+.+.+.+..+.+. .++.+|..|++.|++++|+++|++|.+.+ ++|+..+|+.||.+|.+.+.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G------v~pd~~tyn~Li~~c~~~~~~~~~~~ 82 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG------VQLSQYHYNVLLYVCSLAEAATESSP 82 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT------CCCCHHHHHHHHHHHTTCCCCSSSSC
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHhCCchhhhhh
Confidence 455667777777666554 58899999999999999999999999998 89999999999999987664
Q ss_pred ---hHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHH
Q 035749 76 ---VDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQL 152 (405)
Q Consensus 76 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (405)
+++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc
Q 035749 153 LELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN 213 (405)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (405)
|+.|.+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..+|+.++..+...
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999988763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-28 Score=219.12 Aligned_cols=371 Identities=10% Similarity=-0.027 Sum_probs=314.3
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
...+......+.+.|++++|+..|+++++.+ |++.++..++.++.+.|++++|+..++++.+.+ |.+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 76 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHH
Confidence 4567888999999999999999999999864 688999999999999999999999999999875 6678899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--------------------------------------------------
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQGVQP-------------------------------------------------- 128 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------------------------- 128 (405)
..++.++...|++++|...|+++...+...
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 999999999999999999999998764311
Q ss_pred ----------------------------cHhhHHHHHHHHHc---CCCHHHHHHHHHHHHH-----cCC--------CCC
Q 035749 129 ----------------------------NVVTFSVIMDELCK---NGKMEEASQLLELMIQ-----IGV--------RPN 164 (405)
Q Consensus 129 ----------------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~ 164 (405)
+...+......+.. .|++++|...++++.+ ... +.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 12233333333443 8999999999999988 311 223
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 035749 165 AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIG 244 (405)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (405)
..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.... +.+...+..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence 5677888899999999999999999998875 338889999999999999999999999998864 3466788889999
Q ss_pred HHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 035749 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (405)
+...|++++|...+.++.+.. +.+...+..+...+...|++++|...++.+.... +.+..++..++..+...|++++|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999875 5567788899999999999999999999998875 55678899999999999999999
Q ss_pred HHHHhhccCCCcC-cc----HHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHH
Q 035749 325 WELFHSLPRGVLI-AD----VVTYNIMIHALCA---DGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVE 396 (405)
Q Consensus 325 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 396 (405)
...++++.+.... ++ ...+..++.++.. .|++++|...++++.+.. +.+...+..+..++.+.|++++|..
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999988653211 11 3488999999999 999999999999999863 4477888999999999999999999
Q ss_pred HHHHhhhc
Q 035749 397 LLHRMDER 404 (405)
Q Consensus 397 ~~~~~~~~ 404 (405)
.+++..+.
T Consensus 471 ~~~~a~~~ 478 (514)
T 2gw1_A 471 LFEESADL 478 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988753
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-28 Score=211.32 Aligned_cols=375 Identities=11% Similarity=0.020 Sum_probs=298.9
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHH
Q 035749 5 ALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLL 84 (405)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 84 (405)
..|..+.... +.+...+..++..+.+.|++++|+.+|+++++.. |.+..++..++.++...|++++|+..|+
T Consensus 13 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 13 LGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444555443 5567789999999999999999999999999875 5678999999999999999999999999
Q ss_pred HHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH---hhHHHH------------HHHHHcCCCHHHH
Q 035749 85 QMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV---VTFSVI------------MDELCKNGKMEEA 149 (405)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a 149 (405)
++.+.+ +.+..++..++.++...|++++|...|+++.+..+. +. ..+..+ ...+...|++++|
T Consensus 85 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 85 KVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999875 567889999999999999999999999999986432 33 454444 4458899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 150 SQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
...++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++..++..|...|++++|+..++++...
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999875 6688899999999999999999999999998875 567889999999999999999999999999875
Q ss_pred CCCCchhhHHHH------------HHHHHccccHHHHHHHHHHHHHcCCCcc----HHHHHHHHHHHhcCCChHHHHHHH
Q 035749 230 GIKPTVVTYNTL------------FIGLFEIHQVERAFKLFDEMQRHGVAAD----TWAYRTFIDGLCKNGYIVEALELF 293 (405)
Q Consensus 230 ~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 293 (405)
. +.+...+..+ +..+...|++++|...+.++.+.. +.+ ...+..+..++.+.|++++|...+
T Consensus 241 ~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 241 D-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3 2233344443 788999999999999999998864 223 347788889999999999999999
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHH------------HHcCC-----CH
Q 035749 294 RTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHA------------LCADG-----KM 356 (405)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~ 356 (405)
+++.... +.+..++..++.+|...|++++|...++++.+..+ .+...+..+..+ |...| +.
T Consensus 319 ~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 319 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 9998775 56789999999999999999999999999987532 256666666633 33344 56
Q ss_pred HHHHHHHHH-HHhCC--CCCCH-------HHHHHHHHHHHccCchhHHH
Q 035749 357 DKAHDLFLD-MEAKG--VAPDC-------VAFNTLMLGCIRNNETSKVV 395 (405)
Q Consensus 357 ~~A~~~~~~-~~~~~--~~~~~-------~~~~~l~~~~~~~g~~~~a~ 395 (405)
+++.+.+++ ..+.. ..|+. ..+..+..+|...++.++..
T Consensus 397 ~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp THHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 778888887 44321 11222 36777888888888877654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-27 Score=204.91 Aligned_cols=349 Identities=11% Similarity=0.045 Sum_probs=279.9
Q ss_pred HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 035749 36 IVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAK 115 (405)
Q Consensus 36 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 115 (405)
..+...+..+.... |.+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..++.++...|++++|.
T Consensus 9 ~~~~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 80 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-------MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAAL 80 (450)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccccccccccc-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHH
Confidence 34455556655553 6778899999999999999999999999998764 668999999999999999999999
Q ss_pred HHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH---HHHHHH------------HHHHHccCC
Q 035749 116 RLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNA---FVYNTL------------MDGFCLTGR 180 (405)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~ 180 (405)
..|+++.+.++. +..++..++.++...|++++|...|+++.+.. +.+. ..+..+ ...+...|+
T Consensus 81 ~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 81 PDLTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999987543 67889999999999999999999999999874 3344 555544 445889999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHH
Q 035749 181 VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDE 260 (405)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (405)
+++|...++++.+.. +.+...+..++.+|.+.|++++|+..|+++.... +.+..++..++..+...|++++|...+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998875 5678899999999999999999999999998763 44678899999999999999999999999
Q ss_pred HHHcCCCccHHHHHHH------------HHHHhcCCChHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcCCHHHH
Q 035749 261 MQRHGVAADTWAYRTF------------IDGLCKNGYIVEALELFRTLRILKCELD----IRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 261 ~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 324 (405)
+.... +.+...+..+ +..+...|++++|...++++.... +.+ ...+..++.++.+.|++++|
T Consensus 237 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 98764 4445555444 788999999999999999998864 223 45788899999999999999
Q ss_pred HHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHccC---
Q 035749 325 WELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLG------------CIRNN--- 389 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g--- 389 (405)
...++++.+.. +.+...|..++.+|...|++++|...++++.+.. +.+...+..+..+ |...|
T Consensus 315 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 315 IRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 99999987642 3368899999999999999999999999999852 3356666666532 33334
Q ss_pred --chhHHHHHHHH
Q 035749 390 --ETSKVVELLHR 400 (405)
Q Consensus 390 --~~~~a~~~~~~ 400 (405)
+.+++.+.+++
T Consensus 393 ~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 393 NAKKQEIIKAYRK 405 (450)
T ss_dssp TCCTTHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 55666777765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-27 Score=210.63 Aligned_cols=357 Identities=11% Similarity=-0.012 Sum_probs=301.8
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|+..|+.+.+.+ |+..+|..++.++...|++++|+..|+++++.+ |.+..++..++.++...|++++|.
T Consensus 23 ~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 23 DDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------PDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------hHHHHHHHHHHHHHHHHhhHHHHH
Confidence 37999999999885 789999999999999999999999999999875 567889999999999999999999
Q ss_pred HHHHHHHhCCCCCC------------------------------------------------------------------
Q 035749 81 ELLLQMKDKNINPD------------------------------------------------------------------ 94 (405)
Q Consensus 81 ~~~~~~~~~~~~~~------------------------------------------------------------------ 94 (405)
..|+++...+ +++
T Consensus 94 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 94 FDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 9999987764 211
Q ss_pred -------------hHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CC--C------CccHhhHHHHHHHHHcCCC
Q 035749 95 -------------VVTYNSVIRGFCY---ANDSNEAKRLFIEMMD-----QG--V------QPNVVTFSVIMDELCKNGK 145 (405)
Q Consensus 95 -------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~--~------~~~~~~~~~l~~~~~~~~~ 145 (405)
...+......+.. .|++++|...|+++.+ .. + +.+..++..+...+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 2333333444443 8999999999999987 31 1 2245678888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHH
Q 035749 146 MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSE 225 (405)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 225 (405)
+++|...++++.+.. |+...+..+..++...|++++|...++.+.... +.+...+..+...+...|++++|...+++
T Consensus 253 ~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 253 PLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999885 338888999999999999999999999998875 55778899999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCC-cc
Q 035749 226 MLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCE-LD 304 (405)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 304 (405)
+.... +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...+...|++++|...++++...... ++
T Consensus 330 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 330 AKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 99864 3356788889999999999999999999998874 556788889999999999999999999998765311 11
Q ss_pred ----HHHHHHHHHHHHh---cCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 035749 305 ----IRSYSCLIDGLCK---SGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDC 375 (405)
Q Consensus 305 ----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 375 (405)
...+..++.++.. .|++++|...++++.+.. +.+..++..++.++...|++++|...++++.+. .|+.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 3488899999999 999999999999987653 336788899999999999999999999999986 4443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-26 Score=204.53 Aligned_cols=371 Identities=11% Similarity=0.040 Sum_probs=299.5
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
....|..+...+.+.|++++|+..|+++++.. |.++.++..++.++.+.|++++|++.++++.+.+ |.+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 95 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHH
Confidence 34578889999999999999999999999876 5678999999999999999999999999998875 667889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-------------------------------------Hh---------
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN-------------------------------------VV--------- 131 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------------~~--------- 131 (405)
+..+..++...|++++|...|+.+ .....+. ..
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 999999999999999999999643 2111100 00
Q ss_pred ---------------------hHHHHHHHHHc--------CCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH
Q 035749 132 ---------------------TFSVIMDELCK--------NGKMEEASQLLELMIQIGVRPNA-------FVYNTLMDGF 175 (405)
Q Consensus 132 ---------------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~ 175 (405)
....+...+.. .|++++|..+++.+.+.. +.+. .++..+...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHH
Confidence 11111112111 147889999999998764 3332 3466777888
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHH
Q 035749 176 CLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAF 255 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (405)
...|++++|...++++.... |+...+..+...+...|++++|...++++.... +.+..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999874 558889999999999999999999999998864 346778889999999999999999
Q ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC
Q 035749 256 KLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGV 335 (405)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 335 (405)
..++++.+.. +.+...+..+..++...|++++|...++++.... +.+...+..++..+...|++++|...|+++.+..
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 9999999875 5567788899999999999999999999998875 6677889999999999999999999999876532
Q ss_pred c-----CccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 336 L-----IADVVTYNIMIHALCAD----------GKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 336 ~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
. ......+.....++... |++++|...++++.+. .+.+...+..+..++...|++++|.+.+++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1 11223345556677777 9999999999999986 345778899999999999999999999998
Q ss_pred hhhc
Q 035749 401 MDER 404 (405)
Q Consensus 401 ~~~~ 404 (405)
..+.
T Consensus 488 al~~ 491 (537)
T 3fp2_A 488 SAIL 491 (537)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8653
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-24 Score=180.66 Aligned_cols=333 Identities=13% Similarity=0.042 Sum_probs=208.8
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
++..+..+...+...|++++|+..|+++++.. |.++.++..+..++...|++++|...++++.+.. |.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchH
Confidence 45678888899999999999999999998875 5668899999999999999999999999988764 557788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--ccHhhHHHH------------HHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQ--PNVVTFSVI------------MDELCKNGKMEEASQLLELMIQIGVRP 163 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 163 (405)
+..+...+...|++++|...|+++.+..+. .+...+..+ ...+...|++++|...++++.+.. +.
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 152 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VW 152 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 899999999999999999999999876330 134444433 344445555555555555555443 33
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 035749 164 NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFI 243 (405)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 243 (405)
+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH
Confidence 44445555555555555555555555554442 3344445555555555555555555555544431 111111110000
Q ss_pred HHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccH----HHHHHHHHHHHhcC
Q 035749 244 GLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDI----RSYSCLIDGLCKSG 319 (405)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 319 (405)
+. ...........+...|++++|...++++.... +.+. ..+..++.++...|
T Consensus 231 -----------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 231 -----------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp -----------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTT
T ss_pred -----------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHcc
Confidence 00 00011122555667777777777777776654 2233 23445667777778
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIR 387 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 387 (405)
++++|...++++.+.. +.+..++..++.++...|++++|...|+++.+.. +.+...+..+..+...
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 287 KPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 8888887777776642 2256677777777778888888888888877752 2345555555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-24 Score=179.58 Aligned_cols=315 Identities=12% Similarity=0.033 Sum_probs=211.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
++..+..+...+...|++++|+..|+++.+.. |.+..++..+..++...|++++|...++++.+..+. +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 45678888888888999999999998888764 556788888888888889999999998888876432 5677888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVR---PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (405)
++...|++++|...++++.+.. + .+...+..+..... ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 8888888888888888888763 2 23334433321100 0011222334444555
Q ss_pred hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHH
Q 035749 216 IEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRT 295 (405)
Q Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 295 (405)
+++|+..++++.... +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...+...|++++|...++.
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555544432 2233444444455555555555555555554442 33444455555555555555555555555
Q ss_pred HHhcCCCccHHH------------HHHHHHHHHhcCCHHHHHHHHhhccCCCcCccH----HHHHHHHHHHHcCCCHHHH
Q 035749 296 LRILKCELDIRS------------YSCLIDGLCKSGRLKIAWELFHSLPRGVLIADV----VTYNIMIHALCADGKMDKA 359 (405)
Q Consensus 296 ~~~~~~~~~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 359 (405)
+.+.. +.+... ...++..+...|++++|...++++.+.... +. ..+..+..++...|++++|
T Consensus 214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHH
Confidence 54432 222222 234477799999999999999998764322 22 3455688899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 360 HDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
...++++.+. .+.+...+..+..++...|++++|...++++.+.
T Consensus 292 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 292 IRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999986 3447889999999999999999999999998764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-24 Score=192.21 Aligned_cols=354 Identities=12% Similarity=0.054 Sum_probs=285.5
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|+..|+.+.+.. |.++.+|..+..++...|++++|++.|+++++.+ |.+..++..++.++...|++++|+
T Consensus 42 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 42 NEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------PDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp C-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHcCCHHHHH
Confidence 57899999999875 5678899999999999999999999999999876 567889999999999999999999
Q ss_pred HHHHHHHhCCCC------------------------------------CChH----------------------------
Q 035749 81 ELLLQMKDKNIN------------------------------------PDVV---------------------------- 96 (405)
Q Consensus 81 ~~~~~~~~~~~~------------------------------------~~~~---------------------------- 96 (405)
..|+.+...... |+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (537)
T 3fp2_A 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY 193 (537)
T ss_dssp HHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSH
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHH
Confidence 999644211100 0000
Q ss_pred --HHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCcc-------HhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 97 --TYNSVIRGFC--------YANDSNEAKRLFIEMMDQGVQPN-------VVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 97 --~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
....+...+. ..|++++|..+++++.+..+. + ..++..+...+...|++++|...++++.+.
T Consensus 194 ~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 1111111111 124788999999999876433 2 235667778888999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH
Q 035749 160 GVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN 239 (405)
Q Consensus 160 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (405)
. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|+..++++.... +.+...+.
T Consensus 273 ~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 348 (537)
T 3fp2_A 273 H--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYI 348 (537)
T ss_dssp C--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHH
T ss_pred C--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4 558889999999999999999999999998875 5678899999999999999999999999998864 33567888
Q ss_pred HHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC-----CccHHHHHHHHHH
Q 035749 240 TLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC-----ELDIRSYSCLIDG 314 (405)
Q Consensus 240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~ 314 (405)
.+...+...|++++|...+.++.+.. +.+...+..+...+...|++++|...++++..... ......+...+.+
T Consensus 349 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 349 QLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 89999999999999999999999875 56677889999999999999999999999876431 1122334556677
Q ss_pred HHhc----------CCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 315 LCKS----------GRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 315 ~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
+... |++++|...|+++.+.. +.+...+..+..++...|++++|...|+++.+.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777 99999999999988753 336788999999999999999999999999986
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-21 Score=172.16 Aligned_cols=362 Identities=12% Similarity=0.005 Sum_probs=303.9
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHh----cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh----cCC
Q 035749 4 AALFTKLKAFGCEPNVITYSTLINGLCR----TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK----EGF 75 (405)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 75 (405)
+..++...+. .++.++..+...|.. .+++++|+..|+++.+.+ ++..+..|...|.. .++
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~ 94 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVPQD 94 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCC
Confidence 3344444443 477788888888888 899999999999998754 46788889999998 899
Q ss_pred hHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc----CCCHH
Q 035749 76 VDKAKELLLQMKDKNINPDVVTYNSVIRGFCY----ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK----NGKME 147 (405)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 147 (405)
+++|...|++..+.+ ++..+..|...|.. .+++++|..+|++..+.| +...+..+...|.. .++++
T Consensus 95 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 95 YAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 999999999998875 67888889998988 789999999999998875 56677788888877 78999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh----cCChHHH
Q 035749 148 EASQLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK----NKEIEGA 219 (405)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 219 (405)
+|.++|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ ++.++..+...|.. .+++++|
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999998875 67788888888887 899999999999998864 56677888888876 7899999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHc----cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC-----CChHHHH
Q 035749 220 LSLYSEMLSKGIKPTVVTYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN-----GYIVEAL 290 (405)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~ 290 (405)
..+|++..+.+ +...+..+...+.. .+++++|...|++..+.+ ++.....+...|... +++++|.
T Consensus 243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 99999998864 45566677777777 899999999999998765 456677778888776 8999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcC---CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHc----CCCHHHHHHHH
Q 035749 291 ELFRTLRILKCELDIRSYSCLIDGLCKSG---RLKIAWELFHSLPRGVLIADVVTYNIMIHALCA----DGKMDKAHDLF 363 (405)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 363 (405)
..+++..+.+ +...+..+...|...| ++++|...|++..+.+ +...+..+...|.. .+++++|...|
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999998865 4567788888888766 7899999999988753 67788889999988 89999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHc----cCchhHHHHHHHHhhhc
Q 035749 364 LDMEAKGVAPDCVAFNTLMLGCIR----NNETSKVVELLHRMDER 404 (405)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 404 (405)
++..+.| ++..+..+...|.. .+++++|..++++..+.
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 9999875 57788888888888 89999999999988754
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-23 Score=172.92 Aligned_cols=289 Identities=15% Similarity=0.072 Sum_probs=143.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (405)
.+..++..+...|++++|+++++++.+.. +.+...+..++.++...|++++|...++++.+..+ .+...+..+...+.
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCYYL 101 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHH
Confidence 33444444444444444444444443332 22333333344444444444444444444443321 13333444444444
Q ss_pred cCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHH
Q 035749 142 KNG-KMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGAL 220 (405)
Q Consensus 142 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (405)
..| ++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHH
Confidence 444 4444444444444432 2233444444444444455555555544444432 223334444445555555555555
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC--------CCccHHHHHHHHHHHhcCCChHHHHHH
Q 035749 221 SLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG--------VAADTWAYRTFIDGLCKNGYIVEALEL 292 (405)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~ 292 (405)
..++++.... +.+...+..+...+...|++++|...++++.+.. .+....++..+..++...|++++|...
T Consensus 180 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555554432 2233444555555555555555555555544321 122345666666677777777777777
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHH-HcCCCHH
Q 035749 293 FRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHAL-CADGKMD 357 (405)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 357 (405)
++++.+.. +.+...+..++.++...|++++|...|+++.+.. +.+...+..+..++ ...|+.+
T Consensus 259 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 259 HRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 77766654 4456667777777777777777777777776642 22556666666666 3455443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-22 Score=169.96 Aligned_cols=295 Identities=12% Similarity=0.050 Sum_probs=251.1
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 035749 91 INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNT 170 (405)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (405)
.+.+...+..++..+...|++++|.++|+++.+..+. +...+..++.++...|++++|...++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 3557778888999999999999999999999887433 66777778889999999999999999999875 567888999
Q ss_pred HHHHHHccC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccc
Q 035749 171 LMDGFCLTG-RVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIH 249 (405)
Q Consensus 171 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (405)
+...+...| ++++|...++++.... +.+...+..+...+...|++++|+..++++.... +.+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999875 5567889999999999999999999999998864 334566777899999999
Q ss_pred cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC--------CCccHHHHHHHHHHHHhcCCH
Q 035749 250 QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK--------CELDIRSYSCLIDGLCKSGRL 321 (405)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~ 321 (405)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.... .+....++..++.++...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999875 6678889999999999999999999999987642 134467899999999999999
Q ss_pred HHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HccCchh
Q 035749 322 KIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGC-IRNNETS 392 (405)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 392 (405)
++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999987753 3367889999999999999999999999998862 44777888888877 4566544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-20 Score=165.83 Aligned_cols=334 Identities=13% Similarity=0.021 Sum_probs=284.2
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHh----cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh----c
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCR----TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK----E 73 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 73 (405)
+|+..|+...+.| ++.++..+...|.. .+++++|+.+|+++.+.+ ++..+..|...|.. .
T Consensus 61 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 61 QAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---------LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCC
Confidence 6888888888764 66788889999998 999999999999998754 56778888888888 8
Q ss_pred CChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc----CCC
Q 035749 74 GFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY----ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK----NGK 145 (405)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 145 (405)
+++++|+..|++..+.+ ++..+..|...|.. .++.++|.++|++..+.+ +...+..+...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 89999999999998875 67888889988887 789999999999998874 67788888888887 899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh----cCChH
Q 035749 146 MEEASQLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK----NKEIE 217 (405)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 217 (405)
+++|.++|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .++++
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence 999999999998875 56677788888876 789999999999998764 45677778888877 89999
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHcc-----ccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC---ChHHH
Q 035749 218 GALSLYSEMLSKGIKPTVVTYNTLFIGLFEI-----HQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG---YIVEA 289 (405)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a 289 (405)
+|+..|++..+.+ +...+..+...|... +++++|...+.+..+.+ +...+..+...|...| ++++|
T Consensus 277 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A 350 (490)
T 2xm6_A 277 KALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKA 350 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHH
Confidence 9999999998764 455677788888776 89999999999999875 4556777777777756 88999
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHc----CCCHHHHHH
Q 035749 290 LELFRTLRILKCELDIRSYSCLIDGLCK----SGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCA----DGKMDKAHD 361 (405)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 361 (405)
...+++..+.+ ++..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|..
T Consensus 351 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 351 VEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999998864 67788899999998 899999999999988764 56788889999988 899999999
Q ss_pred HHHHHHhCCC
Q 035749 362 LFLDMEAKGV 371 (405)
Q Consensus 362 ~~~~~~~~~~ 371 (405)
.|++..+.+.
T Consensus 425 ~~~~A~~~~~ 434 (490)
T 2xm6_A 425 WFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHCCC
Confidence 9999998753
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-22 Score=172.51 Aligned_cols=288 Identities=11% Similarity=-0.033 Sum_probs=192.5
Q ss_pred CCHHHHHH-HHHHHHHCCCC---ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 035749 109 NDSNEAKR-LFIEMMDQGVQ---PNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 109 ~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
|++++|.. .|++....... .+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555555 55544332111 123345555556666666666666666665553 44555555666666666666666
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH-H--------------HHHHHHccc
Q 035749 185 KELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN-T--------------LFIGLFEIH 249 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--------------l~~~~~~~~ 249 (405)
...++++.+.. +.+..++..+...+...|++++|...++++...... +...+. . .+..+...|
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 66666665553 345555666666666666666666666666554211 111111 0 122333889
Q ss_pred cHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 035749 250 QVERAFKLFDEMQRHGVAA--DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWEL 327 (405)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 327 (405)
++++|...+.++.+.. +. +..++..+...+...|++++|...++++.... +.+..++..++.++...|++++|...
T Consensus 196 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 196 LFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999988764 33 57788888999999999999999999988775 56778899999999999999999999
Q ss_pred HhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHccCchhHHHHH
Q 035749 328 FHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAP----------DCVAFNTLMLGCIRNNETSKVVEL 397 (405)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~ 397 (405)
|+++.+.. +.+..++..++.++...|++++|...++++.+..... ...+|..+..++...|++++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99887642 3367788899999999999999999999988752111 267889999999999999999988
Q ss_pred HHHhh
Q 035749 398 LHRMD 402 (405)
Q Consensus 398 ~~~~~ 402 (405)
+++..
T Consensus 353 ~~~~l 357 (368)
T 1fch_A 353 DARDL 357 (368)
T ss_dssp HTTCH
T ss_pred HHHHH
Confidence 77543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-20 Score=166.70 Aligned_cols=382 Identities=11% Similarity=0.036 Sum_probs=246.1
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 035749 7 FTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQM 86 (405)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 86 (405)
|+..++.. |-+..+|..++. +.+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|..+|+++
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ra 72 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRC 72 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444442 446667777777 366778888888888877764 556777777777777778888888888877
Q ss_pred HhCCCCCChHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCc-cHhhHHHHHHHHHc---------CCCHHHHH
Q 035749 87 KDKNINPDVVTYNSVIRGF-CYANDSNEAKR----LFIEMMDQ-GVQP-NVVTFSVIMDELCK---------NGKMEEAS 150 (405)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~ 150 (405)
.... |++..|...+... ...|+.++|.+ +|+..+.. |..| +...|...+..... .|+++.|.
T Consensus 73 l~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~ 150 (530)
T 2ooe_A 73 LMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVR 150 (530)
T ss_dssp TTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHH
T ss_pred HhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHH
Confidence 7653 4666666665432 23455555443 55555432 3222 34455555554433 45666777
Q ss_pred HHHHHHHHcCCCCCHHHHH-------------------------------------------------------------
Q 035749 151 QLLELMIQIGVRPNAFVYN------------------------------------------------------------- 169 (405)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 169 (405)
.+|++.++.........|.
T Consensus 151 ~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 151 RVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 7776666521111112221
Q ss_pred ----HHHHHHHc----cCCH----HHHHHHHHHHHhcCCCCChhhHHHHHHHHhh-------cCChH-------HHHHHH
Q 035749 170 ----TLMDGFCL----TGRV----NRAKELFVSMESMGCKHNVFSYSILINGYCK-------NKEIE-------GALSLY 223 (405)
Q Consensus 170 ----~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~ 223 (405)
..+..... .++. .++..+|+++.... +.++..|..++..+.+ .|+++ +|..++
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 11111110 0111 24455566655542 4456677777777665 68876 888888
Q ss_pred HHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccH-HHHHHHHHHHhcCCChHHHHHHHHHHHhcCCC
Q 035749 224 SEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT-WAYRTFIDGLCKNGYIVEALELFRTLRILKCE 302 (405)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 302 (405)
++..+.-.+.+...+..++..+.+.|++++|..+|+++++.. +.+. ..+...+..+.+.|++++|..+|+++.+.. +
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~ 387 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R 387 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-T
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-C
Confidence 888863223356677788888888899999999999888853 2233 467777777888888999999999888753 3
Q ss_pred ccHHHHHHHHHH-HHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CC--CHHHH
Q 035749 303 LDIRSYSCLIDG-LCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGV-AP--DCVAF 378 (405)
Q Consensus 303 ~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~ 378 (405)
.+...+...+.. +...|++++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|+++...+. .| ....|
T Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 333444333332 335888999999998877642 23578888888888889999999999999887632 22 23477
Q ss_pred HHHHHHHHccCchhHHHHHHHHhhh
Q 035749 379 NTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 379 ~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
...+......|+.+.+..+.+++.+
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777888999999888887754
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-22 Score=170.29 Aligned_cols=309 Identities=12% Similarity=-0.046 Sum_probs=158.9
Q ss_pred hcCchHHHHH-HHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 035749 31 RTGHTIVALN-LFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN 109 (405)
Q Consensus 31 ~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (405)
..|++++|+. .|+++.+..+.. ...+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEEN---PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ---------CHHHHCCCCCCSSC---TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhHHHhcCCCC---cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3455555555 555544432110 00123344555555555556666666655555543 334555555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 035749 110 DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV 189 (405)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (405)
++++|...|+++.+..+ .+..++..+..++...|++++|...++++.+.. +.+...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh------
Confidence 55555555555555432 244555555555555555555555555555542 1111111110000 00
Q ss_pred HHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC-chhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCc
Q 035749 190 SMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP-TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAA 268 (405)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 268 (405)
. ......+..+... ...|++++|...++++....... +..++..+...+...|++++|...+.++.... +.
T Consensus 178 -~-----~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G-----AGLGPSKRILGSL-LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHHH-HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h-----hcccHHHHHHHHH-hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 0000000012222 25666666666666666542111 35556666666666677777777776666553 44
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCc----------
Q 035749 269 DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIA---------- 338 (405)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------- 338 (405)
+...+..+..++...|++++|...++++.... +.+..++..++.+|...|++++|...|+++.+.....
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 55666666667777777777777777766654 4456666777777777777777777776655421110
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 339 DVVTYNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 339 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
...+|..+..++...|++++|..++++..
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 14667777777777777777776665433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-22 Score=169.92 Aligned_cols=265 Identities=11% Similarity=-0.020 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
...+..++..+.+.|++++|+..|+++.+.. |.+..++..+...+...|++++|+..|+++.+..+ .+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4456777777777777777777777777654 45667777777777777777777777777776532 256667777777
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCH----------HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--ChhhHHHHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNA----------FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH--NVFSYSILI 207 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 207 (405)
+...|++++|...++++.+.. +.+. ..+..+...+...|++++|...++++.+.. +. +..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 777777777777777776652 1111 122233556666666666666666666553 22 455666666
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChH
Q 035749 208 NGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIV 287 (405)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 287 (405)
..+...|++++|+..++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..++...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 66666666666666666666542 2344556666666666666666666666665543 334555566666666666666
Q ss_pred HHHHHHHHHHhcCCC-----------ccHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 035749 288 EALELFRTLRILKCE-----------LDIRSYSCLIDGLCKSGRLKIAWELFHS 330 (405)
Q Consensus 288 ~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 330 (405)
+|...++++...... .+..++..+..++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 666666665543200 0134455555555555555555554443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-20 Score=162.64 Aligned_cols=371 Identities=11% Similarity=-0.079 Sum_probs=254.0
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCc-c-cccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----C
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFG-V-VCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK----N 90 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 90 (405)
.....|+.+...+...|++++|++.|+++++...... . ..+....+|..+..+|...|++++|...+++..+. .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456799999999999999999999999875310000 0 01334678999999999999999999999887542 1
Q ss_pred ---CCCChHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCccHhhHHHHHHH---HHcCCCHHHHHHHHHHHHHcCCC
Q 035749 91 ---INPDVVTYNSVIRGFCYA--NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE---LCKNGKMEEASQLLELMIQIGVR 162 (405)
Q Consensus 91 ---~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 162 (405)
......++..+..++... +++++|+..|++.++..+. +...+..+..+ +...++.++|++.+++.++.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 112356676666666554 5789999999999887433 45555555544 345677888999999998875 5
Q ss_pred CCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhH
Q 035749 163 PNAFVYNTLMDGFC----LTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTY 238 (405)
Q Consensus 163 ~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (405)
.+..++..+...+. ..+++++|.+.+++..... +.+..++..+...|...|++++|+..++++.+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 56666666655444 3467889999999998875 6678889999999999999999999999998863 3345566
Q ss_pred HHHHHHHHcc-------------------ccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 035749 239 NTLFIGLFEI-------------------HQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL 299 (405)
Q Consensus 239 ~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (405)
..+..+|... +.++.|...+....+.. +.+...+..+...+...|++++|...|+++...
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666555322 34667888888877764 556677888899999999999999999999876
Q ss_pred CCCccHH--HHHHHHH-HHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 035749 300 KCELDIR--SYSCLID-GLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCV 376 (405)
Q Consensus 300 ~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 376 (405)
...+... .+..+.. .....|++++|+..|++..+. .|+...... ....+.+++++.+.. -+.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~-~p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSK-NGADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHH-CC-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHh-CCCCHH
Confidence 5333221 2333333 234678999999999988764 344332221 223445566666655 245778
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 377 AFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 377 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
+|..+..+|...|++++|.+.+++.++.
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 8999999999999999999999998764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-21 Score=164.43 Aligned_cols=266 Identities=11% Similarity=-0.001 Sum_probs=222.5
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...|..+...+.+.|++++|+..|+++++.. |.+..++..++.++...|++++|+..|+++.+.. +.+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKA 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 44568899999999999999999999999875 5678899999999999999999999999998874 567899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhh----------HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--CH
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVT----------FSVIMDELCKNGKMEEASQLLELMIQIGVRP--NA 165 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 165 (405)
+..+..++...|++++|...|+++.+..+. +... +..+...+...|++++|...++++.+.. +. +.
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 213 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDP 213 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCH
Confidence 999999999999999999999999875322 2222 2345788899999999999999999885 33 68
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 035749 166 FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGL 245 (405)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (405)
.++..+..++...|++++|...++++.+.. +.+..++..+..+|...|++++|+..|+++.+.. +.+..++..+..++
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Confidence 899999999999999999999999998875 5678899999999999999999999999998863 34577889999999
Q ss_pred HccccHHHHHHHHHHHHHcCCC-----------ccHHHHHHHHHHHhcCCChHHHHHHHHH
Q 035749 246 FEIHQVERAFKLFDEMQRHGVA-----------ADTWAYRTFIDGLCKNGYIVEALELFRT 295 (405)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 295 (405)
...|++++|...++++.+.... .+...+..+..++...|+.+.+..+..+
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999998864211 1356788888999999999988877654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.6e-21 Score=158.87 Aligned_cols=264 Identities=11% Similarity=-0.069 Sum_probs=170.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK 212 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (405)
+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2334444444444444455555555554444432 2334444444445555
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHH-------------H-HH-HHHccccHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 035749 213 NKEIEGALSLYSEMLSKGIKPTVVTYNT-------------L-FI-GLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFI 277 (405)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l-~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 277 (405)
.|++++|...++++.... +.+...+.. + .. .+...|++++|...+.++.+.. +.+...+..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 555555555555544431 111111111 1 22 3677888889999888888764 55677888888
Q ss_pred HHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHH
Q 035749 278 DGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMD 357 (405)
Q Consensus 278 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 357 (405)
..+...|++++|...++++.... +.+..++..++..+...|++++|...++++.+.. +.+...+..++.++...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 88888999999999998888765 5567888888889999999999999998877642 235778888888999999999
Q ss_pred HHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 358 KAHDLFLDMEAKGVAP-----------DCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 358 ~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
+|...++++.+..... +...+..+..++...|++++|..++++..
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999888752211 36778888889999999999988887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-20 Score=156.77 Aligned_cols=268 Identities=7% Similarity=-0.082 Sum_probs=188.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
+...+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|...++++.+..+ .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 44567788888999999999999999988764 55788888899999999999999999999887643 36778888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHccCCHHHHHHHHHHHHhcCCCCChhhH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNTL--------------MD-GFCLTGRVNRAKELFVSMESMGCKHNVFSY 203 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (405)
.+...|++++|...++++.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999999988764 3333333333 22 3566677777777777776664 4456667
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC
Q 035749 204 SILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (405)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (405)
..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 777777777777777777777776652 2345566666677777777777777777766653 44556666666777777
Q ss_pred CChHHHHHHHHHHHhcCCCc-----------cHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 035749 284 GYIVEALELFRTLRILKCEL-----------DIRSYSCLIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 284 ~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
|++++|...++++....... +..++..++.++...|++++|..++++..
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 77777777777666543111 45566666666667777777766666544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-19 Score=146.37 Aligned_cols=278 Identities=9% Similarity=0.015 Sum_probs=199.9
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
++.....|++..|+..++...... ..+.......+.++|...|+++.|+..++. . .+|+..++..+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~------p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS------PERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYL 75 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS------HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC------chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHH
Confidence 456677899999999888765543 111234566778888999999888876644 2 356777888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQP-NVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
...++.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++.++.+.|++++|
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 88888999999999888765433 456667777888888999999988876 45777888888888888999999
Q ss_pred HHHHHHHHhcCCCCChhhH---HHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHH
Q 035749 185 KELFVSMESMGCKHNVFSY---SILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEM 261 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (405)
.+.++++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...++++
T Consensus 150 ~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 150 RKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99888888764 332211 22334444567888888888888876 3456777888888888888888888888888
Q ss_pred HHcCCCccHHHHHHHHHHHhcCCChHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 262 QRHGVAADTWAYRTFIDGLCKNGYIVE-ALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELF 328 (405)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (405)
++.. +.++.++..++..+...|+.++ +.++++++.+.. |.++.+ .....+.+.++++..-|
T Consensus 227 l~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 227 LDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHH----HHHHHHHHHHHHHHHHc
Confidence 8764 5567778888888888888765 567888877664 333332 23344555555554433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-21 Score=160.02 Aligned_cols=279 Identities=11% Similarity=0.058 Sum_probs=116.7
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|.++++++ +++.+|..++.++.+.|++++|++.|.+. ++...|..++..+...|++++|+
T Consensus 20 d~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 20 DRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3455556555 23347888888888888888888888543 45567888888888888888888
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
..++..++. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 877766654 3456777788888888888888777764 356678888888888888888888888865
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHH
Q 035749 161 VRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNT 240 (405)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (405)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..|+ ....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHH
Confidence 36778888888888888888888877 267788888888888888888855444322 2333 3445
Q ss_pred HHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHh-cCCCc------cHHHHHHHHH
Q 035749 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRI-LKCEL------DIRSYSCLID 313 (405)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~ 313 (405)
++..|.+.|.+++|..+++..+... +.....++.+..+|++- .+++..+.++.... .+++| +...|..+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 7777888888888888888877654 45566666666666553 23333333332221 12222 3445777777
Q ss_pred HHHhcCCHHHHHHHH
Q 035749 314 GLCKSGRLKIAWELF 328 (405)
Q Consensus 314 ~~~~~~~~~~a~~~~ 328 (405)
.|...++++.|....
T Consensus 291 ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 291 LYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHhhchHHHHHHHH
Confidence 888888888776654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-19 Score=146.84 Aligned_cols=251 Identities=9% Similarity=0.032 Sum_probs=120.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHH
Q 035749 70 LCKEGFVDKAKELLLQMKDKNINPD--VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKME 147 (405)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 147 (405)
....|++..|+..++..... .|+ ......+.++|...|+++.|+..++. ..+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 33455566665555544332 122 12334445555555555555544432 12334445555555555555555
Q ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHH
Q 035749 148 EASQLLELMIQIGV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (405)
Q Consensus 148 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (405)
+|++.++++...+. +.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555554432 22334444444555555555555555544 234445555555555555555555555555
Q ss_pred HhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHH
Q 035749 227 LSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIR 306 (405)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 306 (405)
.+.. |+.. ...+.. ..+..+...|++++|..+|+++.... |.+..
T Consensus 157 ~~~~--p~~~-~~~l~~-------------------------------a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~ 201 (291)
T 3mkr_A 157 QDQD--EDAT-LTQLAT-------------------------------AWVSLAAGGEKLQDAYYIFQEMADKC-SPTLL 201 (291)
T ss_dssp HHHC--TTCH-HHHHHH-------------------------------HHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHH
T ss_pred HhhC--cCcH-HHHHHH-------------------------------HHHHHHhCchHHHHHHHHHHHHHHhC-CCcHH
Confidence 4432 2211 111111 11122223355555555555555442 44555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHH-HHHHHHHHHh
Q 035749 307 SYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDK-AHDLFLDMEA 368 (405)
Q Consensus 307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 368 (405)
.++.++.++...|++++|...|+++.+.. +.+..++..++..+...|+.++ +.++++++.+
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55555555555555555555555544431 1244455555555555555543 3455555554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-17 Score=148.79 Aligned_cols=354 Identities=10% Similarity=-0.009 Sum_probs=258.2
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHH-HhcCChHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGL-CKEGFVDKAK 80 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~ 80 (405)
+|+.+|+.+++.. |.+...|..++..+.+.|++++|..+|+++++.. |+...|...+... ...|+.+.|.
T Consensus 30 ~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--------p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 30 KARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--------LHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--------CCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHccchhhHH
Confidence 6889999999873 5677889999999999999999999999999864 4677777777533 3457777665
Q ss_pred H----HHHHHHhC-CCC-CChHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCccHhhHHHHHH-------
Q 035749 81 E----LLLQMKDK-NIN-PDVVTYNSVIRGFCY---------ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD------- 138 (405)
Q Consensus 81 ~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------- 138 (405)
+ +|++.... |.. ++...|...+..... .|+++.|..+|++.++....+....|.....
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 5 66665542 332 356677776665544 6778888888888776311111122221111
Q ss_pred ----------------------------------------------------------HHHc----CCCH----HHHHHH
Q 035749 139 ----------------------------------------------------------ELCK----NGKM----EEASQL 152 (405)
Q Consensus 139 ----------------------------------------------------------~~~~----~~~~----~~a~~~ 152 (405)
.... .++. +.+..+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 0000 0111 244556
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 153 LELMIQIGVRPNAFVYNTLMDGFCL-------TGRVN-------RAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
|++++... +.+...|..++..+.. .|+++ +|..++++..+.-.|.+...|..++..+.+.|++++
T Consensus 261 y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 261 YEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 66666553 4567778777777765 78887 899999999863235578899999999999999999
Q ss_pred HHHHHHHHHhCCCCCc-h-hhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHH-HhcCCChHHHHHHHHH
Q 035749 219 ALSLYSEMLSKGIKPT-V-VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDG-LCKNGYIVEALELFRT 295 (405)
Q Consensus 219 a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~ 295 (405)
|..+|+++++. .|+ . ..|...+..+.+.|++++|..+|.+..+.. +.+...+...+.. +...|+.++|..+|+.
T Consensus 340 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~ 416 (530)
T 2ooe_A 340 VHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFEL 416 (530)
T ss_dssp HHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 99999999986 443 2 478888888889999999999999998763 2333333332222 3468999999999999
Q ss_pred HHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCc-Cc--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 296 LRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVL-IA--DVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
..+.. +.+...+..++..+...|+.++|..+|++....+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 417 al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 417 GLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98775 56788999999999999999999999999876532 22 2457888888888899999999999999875
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-19 Score=150.26 Aligned_cols=282 Identities=13% Similarity=0.136 Sum_probs=138.6
Q ss_pred hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC
Q 035749 31 RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAND 110 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (405)
+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|+
T Consensus 15 ~~~~ld~A~~fae~~~------------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCC
Confidence 6788999999999982 2359999999999999999999999652 477799999999999999
Q ss_pred HHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 035749 111 SNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVS 190 (405)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (405)
+++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988877764 4457788899999999999999998885 46777999999999999999999999997
Q ss_pred HHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccH
Q 035749 191 MESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADT 270 (405)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 270 (405)
+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~a 207 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHA 207 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCH
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCH
Confidence 6 47899999999999999999999998 27789999999999999999996655432 2344
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc--CCHHHHHHHHhhccCCCcCc------cHHH
Q 035749 271 WAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKS--GRLKIAWELFHSLPRGVLIA------DVVT 342 (405)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~ 342 (405)
.....++..|.+.|.+++|..+++...... +.....|+.+..+|++- ++..+.++.|..-.. ++| +...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in--i~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC--HHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc--CcHHHHHHHHHHH
Confidence 446678899999999999999999998776 67788899998888865 234445555543322 333 3567
Q ss_pred HHHHHHHHHcCCCHHHHHHH
Q 035749 343 YNIMIHALCADGKMDKAHDL 362 (405)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~ 362 (405)
|..+...|...++++.|...
T Consensus 285 w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHH
Confidence 99999999999999988763
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-18 Score=136.36 Aligned_cols=200 Identities=13% Similarity=0.034 Sum_probs=148.1
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
|+++..+..+...+.+.|++++|+..|+++++.+ |.++..+..+..++.+.|++++|+..+++..+.. |.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 5677888889999999999999999999999876 5678889999999999999999999999988875 5577
Q ss_pred HHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Q 035749 96 VTYNSVIRGFCYA-----------NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPN 164 (405)
Q Consensus 96 ~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 164 (405)
..+..+..++... |++++|+..|++.++..+. +...+..+..++...|++++|+..++++++.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 8888888888888 8888888888887776433 56677777777888888888888888887776 56
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 035749 165 AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (405)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (405)
...+..+..++...|++++|...|+++.+.. |.+...+..+...+...|++++|+..+++..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777778888888888888888877764 4566677777777777888888877776654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-18 Score=149.09 Aligned_cols=353 Identities=11% Similarity=-0.037 Sum_probs=237.7
Q ss_pred ChHhHHHHHHhhc--------CCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccc-ccccHHHHHHHHHHHH
Q 035749 1 MEAAALFTKLKAF--------GCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVV-CKPDAVIYTTIIDGLC 71 (405)
Q Consensus 1 ~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 71 (405)
++|++.|++..+. .-+....+|+.+..+|...|++++|...++++++........ ....+.++..+..++.
T Consensus 68 ~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~ 147 (472)
T 4g1t_A 68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRL 147 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHH
Confidence 3567777665432 112345689999999999999999999999987643211110 1224567777766666
Q ss_pred hc--CChHHHHHHHHHHHhCCCCCChHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc----
Q 035749 72 KE--GFVDKAKELLLQMKDKNINPDVVTYNSVIRGF---CYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK---- 142 (405)
Q Consensus 72 ~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 142 (405)
.. +++++|++.|++..+.. |.++..+..+..++ ...++.++|++.+++.++..+. +...+..+...+..
T Consensus 148 ~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~ 225 (472)
T 4g1t_A 148 KCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREE 225 (472)
T ss_dssp HHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC--
T ss_pred HHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhh
Confidence 54 56999999999998874 44666666665553 3557778999999998876433 55566555555443
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc---------
Q 035749 143 NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN--------- 213 (405)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 213 (405)
.+++++|.+.+++..... +.+..++..+...+...|++++|...++++.+.. |.+..++..+...|...
T Consensus 226 ~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp ----CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 467889999999998875 6678889999999999999999999999998875 55667777776665432
Q ss_pred ----------CChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHH--HHHHHHH-HH
Q 035749 214 ----------KEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTW--AYRTFID-GL 280 (405)
Q Consensus 214 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~ 280 (405)
+.++.|...+++..... +.+...+..+...+...|++++|...|++.+.....+... .+..+.. ..
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 23567888888877753 3456678889999999999999999999998875333221 2222222 34
Q ss_pred hcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHH
Q 035749 281 CKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAH 360 (405)
Q Consensus 281 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 360 (405)
...|++++|+..+++..+.. |+...... ....+..+++...+.. +.+..+|..++.+|...|++++|+
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---
T ss_pred HHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 57899999999999998764 33222211 2233444555544432 346788999999999999999999
Q ss_pred HHHHHHHhCC
Q 035749 361 DLFLDMEAKG 370 (405)
Q Consensus 361 ~~~~~~~~~~ 370 (405)
+.|+++++.+
T Consensus 451 ~~y~kALe~~ 460 (472)
T 4g1t_A 451 EDSERGLESG 460 (472)
T ss_dssp ----------
T ss_pred HHHHHHHhcC
Confidence 9999999864
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-18 Score=148.05 Aligned_cols=347 Identities=13% Similarity=0.046 Sum_probs=228.2
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCChHHHHH
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFV---DKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+...+.+.|++++|+++|+++.+.+ ++..+..+...+...|+. ++|+..|++..+. ++..+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~ 74 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQAR 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---------CCTGGGTCC--------------------------------CHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHH
Confidence 36777889999999999999998754 344556677777778888 8999999988854 5666777
Q ss_pred HHHHHHhcC-----CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCH---HHHHHHHHHHHHcCCCCCHHHHHHHH
Q 035749 101 VIRGFCYAN-----DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKM---EEASQLLELMIQIGVRPNAFVYNTLM 172 (405)
Q Consensus 101 l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (405)
|...+...+ ++++|+.+|++..+.|.. ..+..+...|...+.. .++.+.+......| +......+.
T Consensus 75 Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg 148 (452)
T 3e4b_A 75 LGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQV 148 (452)
T ss_dssp HHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHH
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 777555554 788999999999987643 3666777777765543 34555555555554 345566677
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcC---ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHcc-
Q 035749 173 DGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNK---EIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEI- 248 (405)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 248 (405)
..|...+.++++......+.......++..+..+...|...| +.++|+..|++..+.| +++...+..+...|...
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC
Confidence 777777755444444333322211234447888888888888 8899999999988876 34555446677777655
Q ss_pred ---ccHHHHHHHHHHHHHcCCCccHHHHHHHHHH-H--hcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC---
Q 035749 249 ---HQVERAFKLFDEMQRHGVAADTWAYRTFIDG-L--CKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSG--- 319 (405)
Q Consensus 249 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 319 (405)
+++++|...|++.. . .++..+..+... + ...+++++|...|++..+.+ +...+..+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 68999999999887 3 355566666665 4 46789999999999988765 6667777888777 45
Q ss_pred --CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cC
Q 035749 320 --RLKIAWELFHSLPRGVLIADVVTYNIMIHALCA----DGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIR----NN 389 (405)
Q Consensus 320 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 389 (405)
++++|...|++.. . .+...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCC
Confidence 8999999999887 3 366777777777766 4489999999999988763 3345566666653 45
Q ss_pred chhHHHHHHHHhhhcC
Q 035749 390 ETSKVVELLHRMDERN 405 (405)
Q Consensus 390 ~~~~a~~~~~~~~~~~ 405 (405)
+.++|..+++...+.|
T Consensus 373 d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCC
Confidence 7888888888876654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-18 Score=148.51 Aligned_cols=366 Identities=11% Similarity=0.002 Sum_probs=244.6
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCch---HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcC---
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHT---IVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEG--- 74 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 74 (405)
++|++.|+...+.| ++.++..+...|...|++ ++|+.+|+++.+. ++..+..+...+...+
T Consensus 20 ~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----------~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 20 VTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----------SPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHT---CCTGGGTCC--------------------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----------CHHHHHHHHHHHHhCCCCC
Confidence 36889999998876 444566677777778888 8999999999752 5566777777566555
Q ss_pred --ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHH
Q 035749 75 --FVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSN---EAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEA 149 (405)
Q Consensus 75 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 149 (405)
++++|+..|++..+.| ++..+..|...|...+... ++.+.+......| +......+...|...+.++++
T Consensus 87 ~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp HHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 7889999999999876 3347777888887766543 4555555555444 345666777788777754444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc----CChHHHHHH
Q 035749 150 SQLLELMIQIGVRPNAFVYNTLMDGFCLTG---RVNRAKELFVSMESMGCKHNVFSYSILINGYCKN----KEIEGALSL 222 (405)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~ 222 (405)
......+.+.-...++..+..+..+|...| +.++|+..|++..+.| +++...+..+...|... +++++|+..
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 443332222212233448888899999999 9999999999999887 56666667788888665 799999999
Q ss_pred HHHHHhCCCCCchhhHHHHHHH-H--HccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC-----ChHHHHHHHH
Q 035749 223 YSEMLSKGIKPTVVTYNTLFIG-L--FEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG-----YIVEALELFR 294 (405)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~ 294 (405)
|++.. .| +...+..+... + ...+++++|...|++..+.| +......+...|. .| ++++|...|+
T Consensus 240 ~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 240 LEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 99988 43 55566667666 4 56899999999999999876 6667777777776 45 9999999999
Q ss_pred HHHhcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHc----CCCHHHHHHHHHHH
Q 035749 295 TLRILKCELDIRSYSCLIDGLCK----SGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCA----DGKMDKAHDLFLDM 366 (405)
Q Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 366 (405)
+.. +-++.....+...|.. ..++++|...|++..+.| +......|...|.. .+++++|...|+..
T Consensus 312 ~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 312 KAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp TTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 888 3466778888888876 448999999999998865 34556677777764 46899999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 367 EAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 367 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
.+.|.+ +.......+......++..+|..+.++..
T Consensus 385 ~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 385 KAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 998743 22222222333334456777777776544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-17 Score=134.62 Aligned_cols=226 Identities=14% Similarity=0.049 Sum_probs=159.1
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC--CC----hhhH
Q 035749 130 VVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK--HN----VFSY 203 (405)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 203 (405)
...+..+...+...|++++|...++++.+.. .+..++..+..++...|++++|...++++.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3445556666666666666666666666665 55666666666666777777777776666554211 11 4566
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC
Q 035749 204 SILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN 283 (405)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 283 (405)
..+...+...|++++|...++++... .|+. ..+...|++++|...+..+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 67777777777777777777777764 2332 34556677888888888877753 44566777777888888
Q ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHH
Q 035749 284 GYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLF 363 (405)
Q Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 363 (405)
|++++|...++++.... +.+..++..++.++...|++++|...++++.+.. +.+...|..+..++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888888888887765 5567778888888888888888888888877642 235677888888888888888888888
Q ss_pred HHHHhC
Q 035749 364 LDMEAK 369 (405)
Q Consensus 364 ~~~~~~ 369 (405)
+++.+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-17 Score=134.09 Aligned_cols=226 Identities=13% Similarity=0.076 Sum_probs=147.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--c----Hhh
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQP--N----VVT 132 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~ 132 (405)
....+..+...+...|++++|+..|+++.+.. .+..++..+..++...|++++|...+++..+..... + ...
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 45677788888888888888888888887765 677788888888888888888888888877642111 1 466
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK 212 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (405)
+..+..++...|++++|...++++.+.. |+. ..+...|++++|...++.+.... +.+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 6777777777777777777777777653 332 23444566677777777666553 3345556666666666
Q ss_pred cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHH
Q 035749 213 NKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALEL 292 (405)
Q Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 292 (405)
.|++++|...++++.... +.+...+..+...+...|++++|...+..+.+.. +.+...+..+..++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666666666666666542 2244555556666666666666666666665543 33455555555666666666666666
Q ss_pred HHHHHh
Q 035749 293 FRTLRI 298 (405)
Q Consensus 293 ~~~~~~ 298 (405)
++++.+
T Consensus 230 ~~~a~~ 235 (258)
T 3uq3_A 230 LDAART 235 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-17 Score=130.08 Aligned_cols=208 Identities=13% Similarity=-0.025 Sum_probs=82.7
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHH
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIM 137 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (405)
+++..+..+...+.+.|++++|+..|++..+.. |.+...+..+..++.+.|++++|+..|++.++..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 344444555555555555555555555544432 334444445555555555555555555554443221 333444444
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChH
Q 035749 138 DELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (405)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (405)
.++...+ .. ... .....|++++|+..+++..+.. |.+...+..+..++...|+++
T Consensus 81 ~~~~~~~-------------~~--~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 81 EAYVALY-------------RQ--AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHH-------------HT--CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhh-------------hh--hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChH
Confidence 4444330 00 000 0000044444444444444432 223344444444444444444
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHH
Q 035749 218 GALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRT 295 (405)
Q Consensus 218 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 295 (405)
+|+..|++.++.. .+...+..+..++...|++++|...++++.+.. |.+...+..+..++...|++++|...+++
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444444433 333344444444444444444444444444432 23333444444444444444444444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.2e-16 Score=143.42 Aligned_cols=322 Identities=12% Similarity=0.105 Sum_probs=167.3
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
++.--...++.|...|.+.+|+++++++.-.+.. +..+...-+.++.+..+. +..+..++.+++... +
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~----fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d--- 1051 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV----FSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D--- 1051 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCc----ccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---
Confidence 4444567788899999999999999999844311 223445555566665555 445555555444321 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
...+...+...|.+++|..+|++... .....+.++ ...+++++|.++.+++ -+..+|..+..++..
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 22355556666666666666666420 111112221 1445566666555543 134555566666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHH
Q 035749 178 TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKL 257 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 257 (405)
.|++++|...|.+. .+...|..++.++.+.|++++|.+.+...++.. ++....+.++.+|++.+++++....
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 66666666665442 244555556666666666666666665555432 2222223355555555555532222
Q ss_pred HHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC
Q 035749 258 FDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI 337 (405)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (405)
. . .++...+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++..
T Consensus 1190 I----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~----- 1248 (1630)
T 1xi4_A 1190 I----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN----- 1248 (1630)
T ss_pred H----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----
Confidence 1 1 223344445555566666666666666553 245555556666666666666555542
Q ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHH
Q 035749 338 ADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.
T Consensus 1249 -n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1249 -STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred -CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 234444444444444444444443322 111333344444444444444444444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-17 Score=135.02 Aligned_cols=236 Identities=11% Similarity=0.051 Sum_probs=160.1
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--ChHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP--DVVT 97 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 97 (405)
..+......+...|++++|+..|+++++.. |.+..++..+..++...|++++|+..++++.+....+ ...+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 76 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD 76 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHH
Confidence 445667777888888888888888888765 3455577778888888888888888888887732111 1233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
|..+...+...|++++|+..|++..+..+. +...+..+..++...|++++|...+++..+.. +.+...+..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Confidence 777788888888888888888888775333 55677777778888888888888887777663 4556666666633444
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC---hHHHHHHHHHHHhCC-CCCc------hhhHHHHHHHHHc
Q 035749 178 TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE---IEGALSLYSEMLSKG-IKPT------VVTYNTLFIGLFE 247 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~ 247 (405)
.+++++|...++++.+.. +.+...+..+...+...++ ++.|...++++.+.. ..|+ ...+..+...+..
T Consensus 155 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 457888888888777764 4445666666777766666 666777777665531 1122 1345556666666
Q ss_pred cccHHHHHHHHHHHHHcC
Q 035749 248 IHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~ 265 (405)
.|++++|...++++.+..
T Consensus 234 ~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALD 251 (272)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 677777777777666653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-17 Score=136.84 Aligned_cols=246 Identities=11% Similarity=0.068 Sum_probs=178.1
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCChHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF-VDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
..+|..+...+...|++++|+..|+++++.+ |.+..+|..+..++...|+ +++|+..|+++.+.+ +-+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a 168 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQV 168 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHH
Confidence 3567777888888888888888888888875 5567788888888888886 888888888888764 557788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
|..+..++...|++++|+..|+++++..+. +...|..+..++...|++++|+..++++++.. +.+...|+.+..++..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 888888888888888888888888876544 67778888888888888888888888888875 5567778888887777
Q ss_pred -cCCHHHH-----HHHHHHHHhcCCCCChhhHHHHHHHHhhcC--ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccc
Q 035749 178 -TGRVNRA-----KELFVSMESMGCKHNVFSYSILINGYCKNK--EIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIH 249 (405)
Q Consensus 178 -~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 249 (405)
.|..++| +..+++..... +.+...|..+..++...| ++++|++.+.++ +. .+.+...+..++.+|.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHh
Confidence 5554666 47777777664 456677777777777776 577777777776 32 2334556666777776653
Q ss_pred ---------cHHHHHHHHHHH-HHcCCCccHHHHHHHHH
Q 035749 250 ---------QVERAFKLFDEM-QRHGVAADTWAYRTFID 278 (405)
Q Consensus 250 ---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~ 278 (405)
..++|..+++++ .+.+ +.....|..+..
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~ 361 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGR 361 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 247777777777 4442 333344444433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-15 Score=139.82 Aligned_cols=290 Identities=12% Similarity=0.132 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
+.+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.+.|...++... +....+.++.+
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHH
Confidence 344555555555555555555555332 2444555555555555555555555555444321 21222234555
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGA 219 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (405)
|++.+++++...+. + .++...+..+...|...|++++|..+|..+ ..|..++..+.+.|+++.|
T Consensus 1177 YAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 55555544322221 1 223344444555555555555555555553 2455555555555666666
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 035749 220 LSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL 299 (405)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (405)
.+.+++. .+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.....
T Consensus 1241 IEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1241 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 5555554 1334555555555555555555554332 2335556667777788888888888888777765
Q ss_pred CCCccHHHHHHHHHHHHhc--CCHHHHHHHHhhccCCCcCc------cHHHHHHHHHHHHcCCCHHHHHHH---------
Q 035749 300 KCELDIRSYSCLIDGLCKS--GRLKIAWELFHSLPRGVLIA------DVVTYNIMIHALCADGKMDKAHDL--------- 362 (405)
Q Consensus 300 ~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~--------- 362 (405)
. +-....|..+...|.+. ++..++.+.|..-.. ++| +...|..+...|.+.|+++.|...
T Consensus 1310 e-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~ 1386 (1630)
T 1xi4_A 1310 E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAW 1386 (1630)
T ss_pred C-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhh
Confidence 4 45556666666666654 234444444443322 122 456688888888888888888732
Q ss_pred ----HHHHHhCCCCCCHHHHHHHHHHHHccC
Q 035749 363 ----FLDMEAKGVAPDCVAFNTLMLGCIRNN 389 (405)
Q Consensus 363 ----~~~~~~~~~~~~~~~~~~l~~~~~~~g 389 (405)
|+..+. -..++..|...+..|...+
T Consensus 1387 ~~~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1387 KEGQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hhHHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 222222 2346666666666666555
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-16 Score=130.01 Aligned_cols=236 Identities=14% Similarity=0.030 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc--HhhHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN--VVTFSVIMD 138 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 138 (405)
..+......+...|++++|+..|+++.+.. |.+...+..+..++...|++++|+..++++.+.+..++ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445566677777788888888888777663 44555777777777777888888887777776321111 223666777
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
++...|++++|...++++.+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777664 4455667777777777777777777777776653 4455566666623333447777
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHcccc---HHHHHHHHHHHHHcC-CCcc------HHHHHHHHHHHhcCCChHH
Q 035749 219 ALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQ---VERAFKLFDEMQRHG-VAAD------TWAYRTFIDGLCKNGYIVE 288 (405)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~~ 288 (405)
|...++++.+.. +.+...+..+...+...++ +++|...++++.+.. ..|+ ..++..+...+...|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 777777766642 2234455555555655555 555666666555421 0112 1344555556666666666
Q ss_pred HHHHHHHHHhcC
Q 035749 289 ALELFRTLRILK 300 (405)
Q Consensus 289 a~~~~~~~~~~~ 300 (405)
|...++++.+..
T Consensus 240 A~~~~~~al~~~ 251 (272)
T 3u4t_A 240 ADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 666666665553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-16 Score=134.27 Aligned_cols=248 Identities=8% Similarity=-0.028 Sum_probs=172.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCccHhhHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAND-SNEAKRLFIEMMDQGVQPNVVTFSVIM 137 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (405)
+..+|..+...+...|++++|+..++++++.+ |.+..+|..+..++...|+ +++|+..|++++...+. +...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 45677888888888888888888888888764 5567788888888888886 88888888888876544 677788888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh-cCCh
Q 035749 138 DELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK-NKEI 216 (405)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 216 (405)
.++...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++.+.. +.+..+|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 88888888888888888888775 5577778888888888888888888888887775 5567778877777777 5554
Q ss_pred HHH-----HHHHHHHHhCCCCCchhhHHHHHHHHHccc--cHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCC-----
Q 035749 217 EGA-----LSLYSEMLSKGIKPTVVTYNTLFIGLFEIH--QVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNG----- 284 (405)
Q Consensus 217 ~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 284 (405)
++| +..+++.+... +-+...|..+...+...| ++++|...+.++ +. .+.+...+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 666 36666666642 224456666666666655 466666666665 32 2445556666666666543
Q ss_pred ----ChHHHHHHHHHH-HhcCCCccHHHHHHHHHH
Q 035749 285 ----YIVEALELFRTL-RILKCELDIRSYSCLIDG 314 (405)
Q Consensus 285 ----~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~ 314 (405)
..++|.++++++ .+.. +.....|..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~ 362 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRS 362 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 246666666666 4443 3334444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-15 Score=123.11 Aligned_cols=224 Identities=12% Similarity=0.018 Sum_probs=134.7
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCC
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK----EGFVDKAKELLLQMKDKNINP 93 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 93 (405)
++.++..+...+...|++++|+..|+++.+.+ ++.++..+...+.. .+++++|+..|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---
Confidence 45566666666777777777777777766522 34556666666666 677777777777766654
Q ss_pred ChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCCH
Q 035749 94 DVVTYNSVIRGFCY----ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK----NGKMEEASQLLELMIQIGVRPNA 165 (405)
Q Consensus 94 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 165 (405)
++..+..+...+.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +.
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 55666666666666 666777777666666553 45555666666666 666666666666666654 34
Q ss_pred HHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh----cCChHHHHHHHHHHHhCCCCCchhh
Q 035749 166 FVYNTLMDGFCL----TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPTVVT 237 (405)
Q Consensus 166 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (405)
..+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 220 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 220 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHH
Confidence 455555555555 566666666666665542 34455555555555 566666666666655543 1334
Q ss_pred HHHHHHHHHc----cccHHHHHHHHHHHHHcC
Q 035749 238 YNTLFIGLFE----IHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 238 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 265 (405)
+..+...+.. .+++++|...+++..+.+
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 4445555555 555555555555555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-16 Score=125.59 Aligned_cols=201 Identities=15% Similarity=0.047 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
+..+..++..+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4455555555555555555555555555442 334555555555555555555555555555544222 44455555555
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
+...|++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 555566666666655555421122 33445555555566666666666666555543 3345555555666666666666
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 219 ALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
|...++++.... +.+...+..+...+...|++++|...++.+.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666655532 233444555555555666666666666666554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-15 Score=121.59 Aligned_cols=226 Identities=12% Similarity=0.013 Sum_probs=176.9
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHhh
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY----ANDSNEAKRLFIEMMDQGVQPNVVT 132 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (405)
+.++.++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 345778888888888889999999999988874 366778888888888 889999999998888775 6677
Q ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCChhhHH
Q 035749 133 FSVIMDELCK----NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESMGCKHNVFSYS 204 (405)
Q Consensus 133 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (405)
+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 7788888888 888899998888888764 66777888888888 888888888888888764 456677
Q ss_pred HHHHHHhh----cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHc----cccHHHHHHHHHHHHHcCCCccHHHHHHH
Q 035749 205 ILINGYCK----NKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFE----IHQVERAFKLFDEMQRHGVAADTWAYRTF 276 (405)
Q Consensus 205 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 276 (405)
.+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 77777777 788888888888887764 44566677777777 788888888888877764 25566667
Q ss_pred HHHHhc----CCChHHHHHHHHHHHhcC
Q 035749 277 IDGLCK----NGYIVEALELFRTLRILK 300 (405)
Q Consensus 277 ~~~~~~----~~~~~~a~~~~~~~~~~~ 300 (405)
...+.. .+++++|...+++..+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777777 788888888888877765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-16 Score=122.43 Aligned_cols=202 Identities=13% Similarity=0.022 Sum_probs=134.3
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...|..+...+...|++++|+..|+++++.. +.+..++..++..+...|++++|.+.++++.+.. +.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 78 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEI 78 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHH
Confidence 45566777777777777777777777777654 3456677777777777777777777777776653 445666
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035749 98 YNSVIRGFCYA-NDSNEAKRLFIEMMDQGVQP-NVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF 175 (405)
Q Consensus 98 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (405)
+..+...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+..++
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHH
Confidence 77777777777 77777777777776621122 34556666667777777777777777766653 34456666666677
Q ss_pred HccCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 176 CLTGRVNRAKELFVSMESMGCK-HNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
...|++++|...++++.+.. + .+...+..+...+...|+.+.+..+++.+...
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777777777666553 3 45555666666666666777666666666543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-17 Score=133.93 Aligned_cols=183 Identities=9% Similarity=-0.046 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHCCC---CccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 035749 109 NDSNEAKRLFIEMMDQGV---QPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAK 185 (405)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 185 (405)
|++++|+..|+++.+... +.+..++..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555555554321 1123445555555555555555555555555543 334555555555555555666666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC
Q 035749 186 ELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (405)
..++++.+.. +.+..++..+...+...|++++|...++++... .|+..........+...|++++|...+.......
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 5555555543 334455555555555555566665555555543 2222222222233344455555555555444432
Q ss_pred CCccHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 035749 266 VAADTWAYRTFIDGLCKNGYIVEALELFRTLR 297 (405)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 297 (405)
+++... ..++..+...++.++|...++.+.
T Consensus 175 -~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 175 -DKEQWG-WNIVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp -CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHC
T ss_pred -CcchHH-HHHHHHHHHhcCHHHHHHHHHHHh
Confidence 222222 223344444444445555544443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.5e-17 Score=128.64 Aligned_cols=202 Identities=15% Similarity=0.138 Sum_probs=141.4
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChH
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVV 96 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (405)
..+..|..+...+...|++++|+..|+++++.. +.+..++..+...+...|++++|+..++++.+.. +.+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 92 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-------KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAAT 92 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchH
Confidence 345567777888888888888888888888764 4567788888888888888888888888887764 45677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFC 176 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (405)
++..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++.
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 788888888888888888888888877643 356677777888888888888888888887764 456677777788888
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 177 LTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
..|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888888888888877664 455667777778888888888888888887765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=9.4e-17 Score=130.97 Aligned_cols=227 Identities=13% Similarity=-0.024 Sum_probs=158.2
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYA 108 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (405)
+...|++++|+..|+++++..+.. .+.+..++..++..+...|++++|...|+++.+.. +.+..++..+...+...
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALT---DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred cCccchHHHHHHHHHHHHhccccc---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHc
Confidence 345688999999999998863100 13357788889999999999999999999988764 55788888888889999
Q ss_pred CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 035749 109 NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELF 188 (405)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (405)
|++++|...|+++++..+. +..++..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+
T Consensus 91 ~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999988876432 56777888888888888888888888888763 33333334444456667888888888
Q ss_pred HHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC---chhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 189 VSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP---TVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
+...... +++...+ .++..+...++.++|...+.+........ +...+..+...+...|++++|...++++...
T Consensus 168 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 168 KQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 7766653 3333333 35556666677777777777765542100 1344555556666666666666666666554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-15 Score=121.12 Aligned_cols=207 Identities=11% Similarity=-0.022 Sum_probs=179.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 035749 95 VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDG 174 (405)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (405)
...+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 56788889999999999999999999988743 367888999999999999999999999999875 5578889999999
Q ss_pred HHccCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHH
Q 035749 175 FCLTGRVNRAKELFVSMESMGC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVER 253 (405)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (405)
+...|++++|...++++...+. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999987322 3356788889999999999999999999998864 3457788889999999999999
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHH
Q 035749 254 AFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIR 306 (405)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 306 (405)
|...++.+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 244 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY-PGSLE 244 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCCHH
Confidence 999999998864 5677788889999999999999999999998874 33443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-15 Score=117.98 Aligned_cols=205 Identities=8% Similarity=-0.025 Sum_probs=143.4
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.++..+..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHH
Confidence 4566778888888888888888888888887764 45677788888888888888888888888876533 256677777
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcC
Q 035749 137 MDELCKN-GKMEEASQLLELMIQIGVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNK 214 (405)
Q Consensus 137 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (405)
...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 7777788 88888888888777632222 24566677777777777777777777776654 345666667777777777
Q ss_pred ChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 215 EIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 215 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
++++|...++++.......+...+..+...+...|+.+.+..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777777666432134445555555666667777777666666544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-16 Score=125.49 Aligned_cols=201 Identities=11% Similarity=0.095 Sum_probs=128.3
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
.+..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 45567777778888888888888888887753 45677777788888888888888888888776633 25667777777
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
.+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 7777888888888888777764 4566677777777777777777777777776654 4456666677777777777777
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 219 ALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 219 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
|...++++.... +.+..++..+...+...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777766642 234555666666666667777777777666654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=138.03 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=100.2
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD----VVTYNSVIRGFCYANDSNEAKRLFIEMMDQ----GVQ- 127 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~- 127 (405)
......+......+...|++++|...|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4455667777778888888888888888877763 223 346677777788888888888888776542 111
Q ss_pred ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCC--------------------HH
Q 035749 128 PNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVR-PN----AFVYNTLMDGFCLTGR--------------------VN 182 (405)
Q Consensus 128 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 182 (405)
....++..+...+...|++++|...+++..+.... .+ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 12445666667777777777777777776654200 11 2345555666666666 55
Q ss_pred HHHHHHHHHHhc----C-CCCChhhHHHHHHHHhhcCChHHHHHHHHHHH
Q 035749 183 RAKELFVSMESM----G-CKHNVFSYSILINGYCKNKEIEGALSLYSEML 227 (405)
Q Consensus 183 ~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 227 (405)
+|...+++.... + .+....++..+...+...|++++|...+++..
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 555555554332 0 01112234444455555555555555555444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=150.66 Aligned_cols=150 Identities=13% Similarity=0.193 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcC---CCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMING---NGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
..+|+++|.+|++.|++++|.++|++|.+. + +.||..+|+.||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG------~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR------KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH------TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC------CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 347999999999999999999999887643 4 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC------HHHH
Q 035749 96 VTYNSVIRGFCYAND-SNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPN------AFVY 168 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~ 168 (405)
.||+++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+ +.+++..+++ ..++.|+ ..+.
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~ 275 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTS 275 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccch
Confidence 999999999999887 47888999999999999999999887754433 3334444443 2233433 3344
Q ss_pred HHHHHHHHccC
Q 035749 169 NTLMDGFCLTG 179 (405)
Q Consensus 169 ~~l~~~~~~~~ 179 (405)
..|.+.|.+.+
T Consensus 276 ~LL~dl~s~d~ 286 (1134)
T 3spa_A 276 KLLRDVYAKDG 286 (1134)
T ss_dssp TTTHHHHCCCS
T ss_pred HHHHHHHccCC
Confidence 45556666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-14 Score=125.88 Aligned_cols=390 Identities=11% Similarity=0.004 Sum_probs=239.4
Q ss_pred HhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC---hHHH
Q 035749 3 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF---VDKA 79 (405)
Q Consensus 3 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a 79 (405)
-+..|+..+... +-|..+|..++..+.+.++++.+..+|++++... |.....|...+..-.+.++ ++.+
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-------P~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-------PLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 344566666654 5688899999999999999999999999999874 6778889999988888888 9999
Q ss_pred HHHHHHHHhCC-CCCChHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-Cc-cHhhHHHHHHHHHc-----
Q 035749 80 KELLLQMKDKN-INPDVVTYNSVIRGFCYANDS--------NEAKRLFIEMMD-QGV-QP-NVVTFSVIMDELCK----- 142 (405)
Q Consensus 80 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~----- 142 (405)
..+|++..... .+|++..|...+....+.++. +...++|+..+. .|. .+ +...|...+.....
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 99999988763 137888888887766665543 334467777654 354 34 34566666654432
Q ss_pred ----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------------cCCHHH----------------------
Q 035749 143 ----NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL-------------TGRVNR---------------------- 183 (405)
Q Consensus 143 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~---------------------- 183 (405)
.++++.+..+|++++......-..+|......-.. ..+++.
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 23456677777777643211111222111110000 001111
Q ss_pred ---------------------------------------------HHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 184 ---------------------------------------------AKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 184 ---------------------------------------------a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
+..+|+++.... +.....|...+..+...|+.++
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTT
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHH
Confidence 223333333321 3344455555555566677777
Q ss_pred HH-HHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCC---------Cc------------cHHHHHHH
Q 035749 219 AL-SLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGV---------AA------------DTWAYRTF 276 (405)
Q Consensus 219 a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l 276 (405)
|. .+|++.... .+.+...+...+......|++++|..+|+.+..... .| ...++...
T Consensus 362 a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y 440 (679)
T 4e6h_A 362 VITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVY 440 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHH
Confidence 75 777777664 233444455566666677778888888777765310 12 12245555
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc-CCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCC
Q 035749 277 IDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKS-GRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGK 355 (405)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 355 (405)
+....+.|+.+.|..+|.++.+.........|...+..-.+. ++++.|..+|+...+. .+.+...|...+......|+
T Consensus 441 ~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 441 MNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCC
Confidence 666666777788888888777651122333444333333343 3477888888777664 33355566677776677788
Q ss_pred HHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 356 MDKAHDLFLDMEAKGVAP--DCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 356 ~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
.+.|..+|++++.....+ ....|...+..-.+.|+.+.+.++.+++.+
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888877753211 234666666766777888888888777764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-16 Score=136.85 Aligned_cols=273 Identities=15% Similarity=0.096 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH----hhHHHHHHHHHcCCCHHHHHHHHHHHHHc----C-CCCCHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV----VTFSVIMDELCKNGKMEEASQLLELMIQI----G-VRPNAF 166 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 166 (405)
..+..+...+...|++++|+..|+++++.+.. +. ..+..+...+...|++++|...++++.+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34445566677777777777777777765332 22 35666677777777777777777776543 1 122334
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcC-----CCCChhhHHHHHHHHhhcCC-----------------hHHHHHHHH
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMESMG-----CKHNVFSYSILINGYCKNKE-----------------IEGALSLYS 224 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 224 (405)
++..+...+...|++++|...++++.... .+....++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 55666667777777777777777665431 11223355566666666666 666666665
Q ss_pred HHHhC----CC-CCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCC-cc----HHHHHHHHHHHhcCCChHHHHHHHH
Q 035749 225 EMLSK----GI-KPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVA-AD----TWAYRTFIDGLCKNGYIVEALELFR 294 (405)
Q Consensus 225 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 294 (405)
+.... +. ......+..+...+...|++++|...+.+..+.... ++ ...+..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 54431 10 111224455555566666666666666655542100 01 1144455555555666666666665
Q ss_pred HHHhcCCC-----ccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC-----cCccHHHHHHHHHHHHcCCCHHHHHHHHH
Q 035749 295 TLRILKCE-----LDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGV-----LIADVVTYNIMIHALCADGKMDKAHDLFL 364 (405)
Q Consensus 295 ~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 364 (405)
++...... ....++..++..+...|++++|...+++..+.. ......++..+..+|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 55443200 013344555555555555665555555543310 00012344455555555555555555555
Q ss_pred HHHhC
Q 035749 365 DMEAK 369 (405)
Q Consensus 365 ~~~~~ 369 (405)
++.+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-16 Score=135.96 Aligned_cols=301 Identities=14% Similarity=0.062 Sum_probs=211.9
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKP--DAVIYTTIIDGLCKEGFVDKAKELLLQMKDK---- 89 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 89 (405)
.+....+......+...|++++|+..|+++++..+. .+ ...++..+...+...|++++|...+++....
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 80 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-----DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 80 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 445667788899999999999999999999987521 11 1467889999999999999999999987543
Q ss_pred CC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CccHhhHHHHHHHHHcCCC------------------
Q 035749 90 NI-NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGV-----QPNVVTFSVIMDELCKNGK------------------ 145 (405)
Q Consensus 90 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~------------------ 145 (405)
+. +....++..+...+...|++++|...+++..+... .....++..+...+...|+
T Consensus 81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 21 12356788889999999999999999998875411 1124477888889999999
Q ss_pred --HHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-C----ChhhHHHHHHHHhhc
Q 035749 146 --MEEASQLLELMIQI----GV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK-H----NVFSYSILINGYCKN 213 (405)
Q Consensus 146 --~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~ 213 (405)
+++|...+++..+. +. +....++..+...+...|++++|...+++..+.... + ...++..+...+...
T Consensus 161 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 240 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 99999999887653 11 112346788889999999999999999988654211 1 123677888888999
Q ss_pred CChHHHHHHHHHHHhC----CCCC-chhhHHHHHHHHHccccHHHHHHHHHHHHHcC----C-CccHHHHHHHHHHHhcC
Q 035749 214 KEIEGALSLYSEMLSK----GIKP-TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG----V-AADTWAYRTFIDGLCKN 283 (405)
Q Consensus 214 ~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~ 283 (405)
|++++|...+++.... +..+ ...++..+...+...|++++|...+.+..+.. . .....++..+...+...
T Consensus 241 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 9999999999887653 1111 13456677777788888888888887766431 0 11134556666677777
Q ss_pred CChHHHHHHHHHHHhc----CC-CccHHHHHHHHHHHHhcCCH
Q 035749 284 GYIVEALELFRTLRIL----KC-ELDIRSYSCLIDGLCKSGRL 321 (405)
Q Consensus 284 ~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 321 (405)
|++++|...+++..+. +. +....++..+...+...|+.
T Consensus 321 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 7777777777766443 10 11233455555555555544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=150.94 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=122.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKD---KNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSV 135 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (405)
...+|+.+|.+|++.|++++|.++|++|.+ .|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC------hhhHHHHHH
Q 035749 136 IMDELCKNGK-MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHN------VFSYSILIN 208 (405)
Q Consensus 136 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 208 (405)
++.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+. .+++..+++ ..+..|+ ..+...|..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999997 588999999999999999999999887644332 333333333 1122222 334445666
Q ss_pred HHhhcC
Q 035749 209 GYCKNK 214 (405)
Q Consensus 209 ~~~~~~ 214 (405)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.5e-16 Score=133.38 Aligned_cols=276 Identities=13% Similarity=0.077 Sum_probs=213.3
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCc
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV----VTYNSVIRGFCYANDSNEAKRLFIEMMDQ----G-VQP 128 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~ 128 (405)
.....+..+...+...|++++|+..|+++.+.. +.+. .++..+...+...|++++|...+++..+. + .+.
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 345567778888999999999999999998874 3343 47888999999999999999999988753 1 122
Q ss_pred cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCC-----------------HHHHHH
Q 035749 129 NVVTFSVIMDELCKNGKMEEASQLLELMIQIG-----VRPNAFVYNTLMDGFCLTGR-----------------VNRAKE 186 (405)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~ 186 (405)
...++..+...+...|++++|...++++.+.. .+....++..+...+...|+ +++|..
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 45677888899999999999999999887651 12234577888899999999 999999
Q ss_pred HHHHHHhc----CC-CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC-Cc----hhhHHHHHHHHHccccHHHHHH
Q 035749 187 LFVSMESM----GC-KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK-PT----VVTYNTLFIGLFEIHQVERAFK 256 (405)
Q Consensus 187 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~ 256 (405)
.+++..+. +. +....++..+...+...|++++|+..+++....... ++ ...+..+...+...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 99887543 11 123447788889999999999999999998764110 11 1267788889999999999999
Q ss_pred HHHHHHHcCC--C---ccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC-----CccHHHHHHHHHHHHhcCCHHHHHH
Q 035749 257 LFDEMQRHGV--A---ADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC-----ELDIRSYSCLIDGLCKSGRLKIAWE 326 (405)
Q Consensus 257 ~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~ 326 (405)
.+++...... . ....++..+...+...|++++|...+++...... .....++..++.+|...|++++|..
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9998876421 1 1145677888899999999999999998865420 1124578888999999999999999
Q ss_pred HHhhccCC
Q 035749 327 LFHSLPRG 334 (405)
Q Consensus 327 ~~~~~~~~ 334 (405)
.+++..+.
T Consensus 365 ~~~~al~~ 372 (411)
T 4a1s_A 365 YAEQHLQL 372 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988874
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.4e-15 Score=125.14 Aligned_cols=298 Identities=12% Similarity=0.010 Sum_probs=194.3
Q ss_pred HHHhcCChHHHHHHHHHHHhC--CCCCC--hHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHCCCCcc--
Q 035749 69 GLCKEGFVDKAKELLLQMKDK--NINPD--VVTYNSVIRG--FCYANDSNEAK-----------RLFIEMMDQGVQPN-- 129 (405)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~-- 129 (405)
.+.+.+++++|..+++++.+. ....+ ...|..++.. ....++++.+. +.++.+.....+.+
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~ 100 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhH
Confidence 345689999999999998654 22223 3333333322 22233344444 56666543211101
Q ss_pred --HhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC------
Q 035749 130 --VVTFSVIMDELCKNGKMEEASQLLELMIQI----GVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGC------ 196 (405)
Q Consensus 130 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------ 196 (405)
...+......+...|++++|...+++..+. +.++ ...++..+..++...|++++|...+++..+...
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 011223566677889999999999988764 1111 245677888889999999999998888765411
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC----CCCC-chhhHHHHHHHHHccccHHHHHHHHHHHHHc----CC-
Q 035749 197 KHNVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIKP-TVVTYNTLFIGLFEIHQVERAFKLFDEMQRH----GV- 266 (405)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~- 266 (405)
+....++..+...|...|++++|+..+++.... +..+ ...++..+...|...|++++|...+.+..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 112346778888888889999998888887653 1011 1236777888888888888888888887762 22
Q ss_pred CccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC----CCccHHHHHHHHHHHHhcCC---HHHHHHHHhhccCCCcCcc
Q 035749 267 AADTWAYRTFIDGLCKNGYIVEALELFRTLRILK----CELDIRSYSCLIDGLCKSGR---LKIAWELFHSLPRGVLIAD 339 (405)
Q Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~ 339 (405)
+....++..+..++...|++++|...+++..... .+.....+..+...+...|+ +++|..++++... .+..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~ 338 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADL 338 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHH
Confidence 3345667778888888888888888888775431 12222335667777777887 7777777777632 2223
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 340 VVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 340 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
...+..+...|...|++++|...++++.+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45667778888888888888888887765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.7e-16 Score=129.36 Aligned_cols=132 Identities=14% Similarity=0.032 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhcC----C-CccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC----c-CccHH
Q 035749 272 AYRTFIDGLCKNGYIVEALELFRTLRILK----C-ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGV----L-IADVV 341 (405)
Q Consensus 272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~ 341 (405)
.+..+...+...|++++|...++++.... . .....++..++..+...|++++|...+++..+.. . .....
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 45555666666777777777766654321 0 1112356666777777777777777776654321 0 01145
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHccCchhHHHHHHHHhhh
Q 035749 342 TYNIMIHALCADGKMDKAHDLFLDMEAK----GV-APDCVAFNTLMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 342 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
++..+...+...|++++|...++++.+. +. .....++..+...+...|++++|...+++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5666777777778888887777776653 10 01133566677777788888888887777654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-14 Score=117.00 Aligned_cols=235 Identities=10% Similarity=0.015 Sum_probs=176.5
Q ss_pred hHHHHHHHHHHhc----Cch----HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh-------cCCh-------H
Q 035749 20 ITYSTLINGLCRT----GHT----IVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK-------EGFV-------D 77 (405)
Q Consensus 20 ~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~ 77 (405)
..|...+....+. ++. ++|+..|+++++.. |.++..|..++..+.. .|++ +
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 81 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 81 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchH
Confidence 4566666655443 233 68999999999874 6778899998888764 4876 8
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHh-hHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 78 KAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVV-TFSVIMDELCKNGKMEEASQLLELM 156 (405)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (405)
+|..+|++..+.-.|.+...|..++..+...|++++|..+|+++++..+. +.. .|..++..+.+.|++++|..+|++.
T Consensus 82 ~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999987312446778999999999999999999999999875322 333 7888888888899999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCC-CCC-
Q 035749 157 IQIGVRPNAFVYNTLMDGFC-LTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IKP- 233 (405)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~- 233 (405)
.+.. +.+...|...+.... ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++.+... .+|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 8864 445555554443322 3688888888888887764 4567788888888888888888888888888752 344
Q ss_pred -chhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 234 -TVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 234 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
....|..++......|+.+.|..+++++.+.
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677777777788888888888887765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-15 Score=112.18 Aligned_cols=167 Identities=11% Similarity=0.062 Sum_probs=114.2
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
++..|..+...+...|++++|++.|+++++.+ |.++.++..+..++.+.|++++|...+....... +.+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHH
Confidence 45567777777777777777777777777765 4556677777777777777777777777776553 445666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
+..+...+...++++.|...+.+.....+. +...+..+..++...|++++|++.|++..+.. +.+..++..+..++..
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHH
Confidence 666666777777777777777776665332 55666666677777777777777777776664 4456666667777777
Q ss_pred cCCHHHHHHHHHHHHhc
Q 035749 178 TGRVNRAKELFVSMESM 194 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~ 194 (405)
.|++++|...|+++.+.
T Consensus 154 ~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 77777777777766654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-15 Score=133.99 Aligned_cols=216 Identities=12% Similarity=0.013 Sum_probs=184.6
Q ss_pred CchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH
Q 035749 33 GHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFV-DKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS 111 (405)
Q Consensus 33 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (405)
+.+++++..++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++
T Consensus 82 ~~~~~al~~l~~~~~~~-------~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-------QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhccC-------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCH
Confidence 45678888888877654 56788999999999999999 99999999998874 55688999999999999999
Q ss_pred HHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----
Q 035749 112 NEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN---------GKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLT---- 178 (405)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 178 (405)
++|...|++.++.. |+...+..+..++... |++++|+..++++.+.. +.+...+..+..+|...
T Consensus 154 ~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 154 TSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhh
Confidence 99999999998864 5568888899999998 99999999999999885 56788889999999888
Q ss_pred ----CCHHHHHHHHHHHHhcCCC---CChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccH
Q 035749 179 ----GRVNRAKELFVSMESMGCK---HNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQV 251 (405)
Q Consensus 179 ----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 251 (405)
|++++|...|+++.+.. + .+...|..+..+|...|++++|...|++..+.. +.+...+..+...+...|++
T Consensus 231 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998874 4 578889999999999999999999999998863 33556788888889999999
Q ss_pred HHHHHHHHHH
Q 035749 252 ERAFKLFDEM 261 (405)
Q Consensus 252 ~~a~~~~~~~ 261 (405)
++|...+.++
T Consensus 309 ~eAi~~~~~~ 318 (474)
T 4abn_A 309 TSLLESKGKT 318 (474)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHhccc
Confidence 9998877655
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-14 Score=118.48 Aligned_cols=218 Identities=11% Similarity=0.031 Sum_probs=180.1
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHh-------cCch-------HHHHHHHHHHHcCCCCCcccccccHHHHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCR-------TGHT-------IVALNLFEEMINGNGEFGVVCKPDAVIYTTII 67 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 67 (405)
+|+.+|+..++.. +.++..|..++..+.. .|++ ++|..+|+++++.- .|.+...|..++
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~------~p~~~~~~~~~~ 106 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LKKNMLLYFAYA 106 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT------TTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh------CcccHHHHHHHH
Confidence 5778999998864 5678889988888763 5886 89999999999842 245678999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH-cCCC
Q 035749 68 DGLCKEGFVDKAKELLLQMKDKNINPDVV-TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC-KNGK 145 (405)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 145 (405)
..+.+.|++++|..+|+++.+.. +.+.. +|..++..+.+.|++++|..+|++.++... ++...|...+.... ..|+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 107 DYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCC
T ss_pred HHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999863 22444 899999999999999999999999998743 34555554444322 3799
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCC--ChhhHHHHHHHHhhcCChHHHHHH
Q 035749 146 MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG-CKH--NVFSYSILINGYCKNKEIEGALSL 222 (405)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 222 (405)
+++|..+|++.++.. +.+...+..++..+...|++++|..+|+++.... .+| ....|..++..+.+.|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998874 5578889999999999999999999999999863 343 466888999999999999999999
Q ss_pred HHHHHhC
Q 035749 223 YSEMLSK 229 (405)
Q Consensus 223 ~~~~~~~ 229 (405)
++++.+.
T Consensus 264 ~~~a~~~ 270 (308)
T 2ond_A 264 EKRRFTA 270 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-15 Score=128.59 Aligned_cols=279 Identities=15% Similarity=0.094 Sum_probs=160.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cc
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD----VVTYNSVIRGFCYANDSNEAKRLFIEMMDQ----GVQ-PN 129 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~ 129 (405)
+...+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++.... +.. ..
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 34455666677777788888888887777653 223 355666777777777777777777766532 111 12
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCC--------------------HHHH
Q 035749 130 VVTFSVIMDELCKNGKMEEASQLLELMIQIGV-RPN----AFVYNTLMDGFCLTGR--------------------VNRA 184 (405)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a 184 (405)
..++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34455566666666666666666666544310 011 1244444455555555 4444
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCC-CCchhhHHHHHHHHHccccHHHHHHHHHHHHH
Q 035749 185 KELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPTVVTYNTLFIGLFEIHQVERAFKLFDEMQR 263 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (405)
...+++..... . ..+. ......+..+...+...|++++|...+.+..+
T Consensus 163 ~~~~~~a~~~~----------------------------~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 163 VDLYEENLSLV----------------------------T---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp HHHHHHHHHHH----------------------------H---HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------H---hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444332210 0 0000 01122445555556666666666666665543
Q ss_pred cC----C-CccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC----C-ccHHHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 035749 264 HG----V-AADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC----E-LDIRSYSCLIDGLCKSGRLKIAWELFHSLPR 333 (405)
Q Consensus 264 ~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (405)
.. . .....++..+...+...|++++|...+++...... + ....++..++..+...|++++|...++++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 212 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 21 0 01122556666677777777777777776654310 0 1145667777888888888888888877654
Q ss_pred CC-----cCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 334 GV-----LIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 334 ~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
.. ......++..+...+...|++++|...++++.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 292 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 21 1112446777888888899999999999888764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.1e-15 Score=125.55 Aligned_cols=299 Identities=9% Similarity=-0.025 Sum_probs=211.9
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHH--HHhcCChHHHH-----------HHHHHHHhCCCCCCh
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDG--LCKEGFVDKAK-----------ELLLQMKDKNINPDV 95 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~ 95 (405)
+.+.+++++|..+++++.+..+... ..++...|..++.. ..-.++++.+. +.++.+.... .+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~ 97 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQME--EDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARL 97 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCc
Confidence 4578999999999999876431100 12233344444332 22234444444 6666665431 122
Q ss_pred HH------HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---
Q 035749 96 VT------YNSVIRGFCYANDSNEAKRLFIEMMDQ----GVQP-NVVTFSVIMDELCKNGKMEEASQLLELMIQIGV--- 161 (405)
Q Consensus 96 ~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 161 (405)
.. +......+...|++++|...|++..+. +..+ ...++..+..++...|++++|...+++..+...
T Consensus 98 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 98 TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 22 223667788999999999999999864 1112 346788899999999999999999999876421
Q ss_pred ---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-----CChhhHHHHHHHHhhcCChHHHHHHHHHHHhC----
Q 035749 162 ---RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK-----HNVFSYSILINGYCKNKEIEGALSLYSEMLSK---- 229 (405)
Q Consensus 162 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 229 (405)
+....++..+..+|...|++++|...+++..+.... ....++..+...|...|++++|+..+++....
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 112357788899999999999999999998754211 12247888999999999999999999998872
Q ss_pred CC-CCchhhHHHHHHHHHccccHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhcCC
Q 035749 230 GI-KPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH----GVAADTWAYRTFIDGLCKNGY---IVEALELFRTLRILKC 301 (405)
Q Consensus 230 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~ 301 (405)
+. +....++..+...+...|++++|...+++..+. +.+.....+..+...+...|+ +++|..++++... .
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~ 335 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--Y 335 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--H
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--H
Confidence 22 334567888999999999999999999988753 112223345667888889998 7777777776522 1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 035749 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPR 333 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (405)
+.....+..++..|...|++++|...+++..+
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23445678899999999999999999987653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-14 Score=109.10 Aligned_cols=168 Identities=15% Similarity=0.112 Sum_probs=137.9
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHH
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIM 137 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (405)
.++.+|..+...+.+.|++++|++.|++..+.. |-++.++..+..++...|++++|...+......... +...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 456788889999999999999999999888775 557888888888888999999999988888776433 566777777
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChH
Q 035749 138 DELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (405)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (405)
..+...++++.+...+.+..+.. +.+...+..+..++...|++++|+..|++..+.. |.+..++..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 88888888899888888888774 5567788888888888888888888888888775 567778888888888888888
Q ss_pred HHHHHHHHHHhC
Q 035749 218 GALSLYSEMLSK 229 (405)
Q Consensus 218 ~a~~~~~~~~~~ 229 (405)
+|+..|++.++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 888888888775
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.1e-15 Score=128.62 Aligned_cols=217 Identities=14% Similarity=-0.023 Sum_probs=189.4
Q ss_pred CChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHH
Q 035749 74 GFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS-NEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQL 152 (405)
Q Consensus 74 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (405)
+.+++++..++...... +.+...+..+...+...|++ ++|++.|++.++..+. +...+..+..+|...|++++|...
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34678888888877653 55789999999999999999 9999999999987543 688999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc--------CC
Q 035749 153 LELMIQIGVRPNAFVYNTLMDGFCLT---------GRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN--------KE 215 (405)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 215 (405)
|+++.+. .|+...+..+..++... |++++|...++++.+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 9999987 46678899999999999 99999999999999885 56788999999999998 99
Q ss_pred hHHHHHHHHHHHhCCCC--CchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHH
Q 035749 216 IEGALSLYSEMLSKGIK--PTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELF 293 (405)
Q Consensus 216 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 293 (405)
+++|+..|++..+.... .+...+..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986310 377889999999999999999999999999875 556778889999999999999999877
Q ss_pred HHH
Q 035749 294 RTL 296 (405)
Q Consensus 294 ~~~ 296 (405)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 655
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.6e-15 Score=122.70 Aligned_cols=177 Identities=15% Similarity=0.085 Sum_probs=134.9
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCc-ccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFG-VVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK------N 90 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 90 (405)
+..++..+...+...|++++|+.+|+++++...... ...+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788999999999999999999999987310000 002456778999999999999999999999988754 1
Q ss_pred -CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc---
Q 035749 91 -INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ------GV-QPNVVTFSVIMDELCKNGKMEEASQLLELMIQI--- 159 (405)
Q Consensus 91 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 159 (405)
.+....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1334667888899999999999999999988764 11 224556777888888999999999998888765
Q ss_pred ---CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 160 ---GV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 160 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
+. +....++..+..++...|++++|...++++.+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 223456777888888888888888888887653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-15 Score=123.37 Aligned_cols=173 Identities=16% Similarity=0.105 Sum_probs=129.6
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 035749 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-------NINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ---- 124 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 124 (405)
.+....++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3556778999999999999999999999988763 22345677888889999999999999999888754
Q ss_pred --C-CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 125 --G-VQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI------GV-RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 125 --~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
+ .+....++..+...+...|++++|...++++.+. +. +.....+..+..++...|++++|..+++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 2234567778888888899999999988887764 21 223455677778888888888888888887654
Q ss_pred ------C-CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 035749 195 ------G-CKHNVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (405)
Q Consensus 195 ------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (405)
+ .+....++..+...+...|++++|...++++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 122344667777788888888888888877765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.7e-13 Score=112.98 Aligned_cols=309 Identities=9% Similarity=-0.015 Sum_probs=184.0
Q ss_pred cccHHHHHHHHHHH--HhcCChHHHHHHHHHHHhC--CC--CCChHHHHHHHHH--HHhcCCHHHHH---------HHHH
Q 035749 57 KPDAVIYTTIIDGL--CKEGFVDKAKELLLQMKDK--NI--NPDVVTYNSVIRG--FCYANDSNEAK---------RLFI 119 (405)
Q Consensus 57 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~ 119 (405)
.|+..+-..+-..| +..+++++|..+++++.+. .. .++...|-.++.. ..-.+.+..+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45556666666666 7889999999999987553 11 1223333333322 11112222222 4555
Q ss_pred HHHHCCCCcc----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 035749 120 EMMDQGVQPN----VVTFSVIMDELCKNGKMEEASQLLELMIQIGV-RP----NAFVYNTLMDGFCLTGRVNRAKELFVS 190 (405)
Q Consensus 120 ~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (405)
.+.....+.+ ...+......+...|++++|...++++.+... .+ ...++..+..+|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 5433211101 11223344556678888888888888775421 11 234667777888888888888888887
Q ss_pred HHhcCC--C----CChhhHHHHHHHHhhcCChHHHHHHHHHHHhC----CCC-CchhhHHHHHHHHHccccHHHHHHHHH
Q 035749 191 MESMGC--K----HNVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIK-PTVVTYNTLFIGLFEIHQVERAFKLFD 259 (405)
Q Consensus 191 ~~~~~~--~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 259 (405)
..+... . ....++..+...|...|++++|...+.+.... +.. ....++..+..++...|++++|...+.
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 754311 0 12446677777888888888888888776652 111 112356667777777888888888887
Q ss_pred HHHH-----cCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC----CCccHHHHHHHHHHHHhcCC---HHHHHHH
Q 035749 260 EMQR-----HGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK----CELDIRSYSCLIDGLCKSGR---LKIAWEL 327 (405)
Q Consensus 260 ~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 327 (405)
+... .. +....++..+..++.+.|++++|...+++..... .+.....+..+...+...++ +.+|...
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 7765 32 3335566777777777788888877777766542 12223344555555666666 6667776
Q ss_pred HhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 328 FHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
+++... .+.....+..+...|...|++++|...|+++.+
T Consensus 326 ~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 665322 122334555677777777777777777777654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-11 Score=110.69 Aligned_cols=371 Identities=11% Similarity=0.009 Sum_probs=252.1
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCc---hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCCh--
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGH---TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFV-- 76 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 76 (405)
.|..+|+.++.. +|.....|...+..-.+.|+ ++.+..+|++++...+ .+|+...|...+....+.++.
T Consensus 84 ~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~-----~~~sv~LW~~Yl~f~~~~~~~~~ 157 (679)
T 4e6h_A 84 QVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL-----GNNDLSLWLSYITYVRKKNDIIT 157 (679)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS-----CCCCHHHHHHHHHHHHHHSCSTT
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHhccccc
Confidence 477899999987 46778889999999999999 9999999999998641 137888998888777666554
Q ss_pred ------HHHHHHHHHHHh-CCC-CC-ChHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCccHhhHHH---
Q 035749 77 ------DKAKELLLQMKD-KNI-NP-DVVTYNSVIRGFCY---------ANDSNEAKRLFIEMMDQGVQPNVVTFSV--- 135 (405)
Q Consensus 77 ------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 135 (405)
+...++|+.... .|. .+ +...|...+..... .++++.+..+|+.++......-..+|..
T Consensus 158 ~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~ 237 (679)
T 4e6h_A 158 GGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ 237 (679)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 334467777654 354 33 45677777765432 3345667777777764311111111110
Q ss_pred ----------------------------------------------------------------------HHHHHHcCC-
Q 035749 136 ----------------------------------------------------------------------IMDELCKNG- 144 (405)
Q Consensus 136 ----------------------------------------------------------------------l~~~~~~~~- 144 (405)
.+..--..+
T Consensus 238 fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 238 WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 000000000
Q ss_pred ------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhcCCCCChhhHHHHHHHHhhcCChH
Q 035749 145 ------KMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAK-ELFVSMESMGCKHNVFSYSILINGYCKNKEIE 217 (405)
Q Consensus 145 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 217 (405)
..+.+..+|++++.. ++-....|...+..+...|+.++|. .+|++.... +|.+...|..++....+.|+++
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHH
Confidence 011233445555544 2445666666677777788888996 999999875 3566777788888899999999
Q ss_pred HHHHHHHHHHhCC---------CCCc------------hhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHH
Q 035749 218 GALSLYSEMLSKG---------IKPT------------VVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTF 276 (405)
Q Consensus 218 ~a~~~~~~~~~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 276 (405)
.|.++|++++... ..|+ ...|...+....+.|+.+.|..+|..+.+.........|...
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~ 475 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 9999999988631 0131 235666677777889999999999999876112233444444
Q ss_pred HHHHhcC-CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC--ccHHHHHHHHHHHHcC
Q 035749 277 IDGLCKN-GYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI--ADVVTYNIMIHALCAD 353 (405)
Q Consensus 277 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 353 (405)
+..-.+. ++.+.|..+|+...+. .+.+...+...+......|+.+.|..+|++....... -....|...+..-...
T Consensus 476 A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 476 AYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 4333344 5599999999999886 3567777788888888899999999999999886432 1456788888888899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035749 354 GKMDKAHDLFLDMEAKGVAPDCVAFNTLML 383 (405)
Q Consensus 354 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 383 (405)
|+.+.+.++.+++.+. .|+......++.
T Consensus 555 G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 555 GSLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp CCSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 9999999999999986 344333334433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-13 Score=114.88 Aligned_cols=313 Identities=11% Similarity=-0.024 Sum_probs=216.1
Q ss_pred CCChhHHHHHHHHH--HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHH--HHhcCChHHHH---------HH
Q 035749 16 EPNVITYSTLINGL--CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDG--LCKEGFVDKAK---------EL 82 (405)
Q Consensus 16 ~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~---------~~ 82 (405)
.|+..+-..+-..| ...+++++|..+++++.+...... ...+...|..++.. ..-.+.+..+. +.
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQME--EDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBC--CCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 45555656666666 789999999999999866431100 11233344444432 11122333333 66
Q ss_pred HHHHHhCCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---ccHhhHHHHHHHHHcCCCHHHHHHHH
Q 035749 83 LLQMKDKNINPDV----VTYNSVIRGFCYANDSNEAKRLFIEMMDQGV--Q---PNVVTFSVIMDELCKNGKMEEASQLL 153 (405)
Q Consensus 83 ~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 153 (405)
++.+.....+.+. ..+......+...|++++|+..|++..+... . ....++..+..+|...|+++.|...+
T Consensus 85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 6665432111111 1233455667889999999999999876421 1 13457788899999999999999999
Q ss_pred HHHHHcCC--C----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC----CC-CChhhHHHHHHHHhhcCChHHHHHH
Q 035749 154 ELMIQIGV--R----PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG----CK-HNVFSYSILINGYCKNKEIEGALSL 222 (405)
Q Consensus 154 ~~~~~~~~--~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 222 (405)
++..+... . ....++..+..+|...|++++|...+++..+.. .+ ....++..+..+|...|++++|+..
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 98876411 1 124567889999999999999999999886531 11 1235678899999999999999999
Q ss_pred HHHHHh-----CCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcC----CCccHHHHHHHHHHHhcCCC---hHHHH
Q 035749 223 YSEMLS-----KGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG----VAADTWAYRTFIDGLCKNGY---IVEAL 290 (405)
Q Consensus 223 ~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~ 290 (405)
+++... .. +....++..+...+...|++++|...+++..+.. .+.....+..+...+...++ ..+|+
T Consensus 245 ~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al 323 (378)
T 3q15_A 245 FQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999887 42 2336678888999999999999999999988642 12233456666677778888 77777
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 035749 291 ELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPR 333 (405)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (405)
..++.... .+.....+..++..|...|++++|...|++..+
T Consensus 324 ~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 324 SYFEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77776321 123345677899999999999999999988754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.7e-14 Score=126.60 Aligned_cols=168 Identities=12% Similarity=0.045 Sum_probs=151.7
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
|.++.+|+.+...+.+.|++++|++.|+++++.. |.+..++..+..++.+.|++++|+..|++..+.+ +.+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~ 77 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFA 77 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 4457789999999999999999999999999976 5678899999999999999999999999998875 5578
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF 175 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (405)
..|..+..++...|++++|++.|++.++.... +..++..+..++...|++++|+..|++.++.. +.+...+..+..++
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHH
Confidence 99999999999999999999999999987544 68889999999999999999999999999985 56788999999999
Q ss_pred HccCCHHHHHHHHHHHHh
Q 035749 176 CLTGRVNRAKELFVSMES 193 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~ 193 (405)
...|++++|.+.++++.+
T Consensus 156 ~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHTTCCTTHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 999999999999888765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-12 Score=109.34 Aligned_cols=272 Identities=11% Similarity=0.010 Sum_probs=179.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHh----hHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCH----HHH
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVV----TFSVIMDELCKNGKMEEASQLLELMIQIGV-RPNA----FVY 168 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~ 168 (405)
.......+...|++++|...+++........+.. .+..+...+...|++++|...+++..+... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556677899999999998887754322221 455666777888999999988888765421 1111 234
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhc----CCC--C-ChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCC--C--chhh
Q 035749 169 NTLMDGFCLTGRVNRAKELFVSMESM----GCK--H-NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK--P--TVVT 237 (405)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~ 237 (405)
..+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 56777888889999998888887653 211 2 2345666777888889999998888887764211 1 1235
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHcCCCc-c-HHHHH----HHHHHHhcCCChHHHHHHHHHHHhcCCCc---cHHHH
Q 035749 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGVAA-D-TWAYR----TFIDGLCKNGYIVEALELFRTLRILKCEL---DIRSY 308 (405)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 308 (405)
+..+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...++........+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 6667777888888888888888876531111 1 11111 22344667888888888888876543211 13345
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhccCC----CcCccH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 309 SCLIDGLCKSGRLKIAWELFHSLPRG----VLIADV-VTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 309 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
..+...+...|++++|...++..... +..++. ..+..+..++...|++++|...+++....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 66777888888888888888776432 111222 35666677788888888888888888775
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-13 Score=124.13 Aligned_cols=169 Identities=13% Similarity=0.029 Sum_probs=153.5
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHH
Q 035749 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSV 135 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (405)
.|.++.+++.+..++.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|+..|++.++.... +..+|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 46678899999999999999999999999999874 557899999999999999999999999999987543 6889999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (405)
+..++...|++++|++.|++.++.. +.+...+..+..++...|++++|+..|+++.+.. +.+...+..+..++...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc
Confidence 9999999999999999999999985 5678899999999999999999999999999885 5678899999999999999
Q ss_pred hHHHHHHHHHHHh
Q 035749 216 IEGALSLYSEMLS 228 (405)
Q Consensus 216 ~~~a~~~~~~~~~ 228 (405)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-13 Score=104.95 Aligned_cols=197 Identities=12% Similarity=0.040 Sum_probs=155.4
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV 95 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 95 (405)
+.++..+......+...|++++|+..|+++++.. .+++...+..+..++...|++++|+..+++..+.. |.+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 76 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLA 76 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc------CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchH
Confidence 3466888999999999999999999999999876 23677888889999999999999999999999875 5567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--CHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV-------VTFSVIMDELCKNGKMEEASQLLELMIQIGVRP--NAF 166 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~ 166 (405)
..+..+..++...|++++|+..+++..+..+. +. ..|..+...+...|++++|+..++++++.. +. +..
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 154 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTD 154 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHH
Confidence 88999999999999999999999999886433 44 457788888999999999999999998873 33 456
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
.+..+..++...| ...++.+...+ ..+...+.... ....+.+++|+..+++..+.
T Consensus 155 ~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 155 ALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 7777777776544 34455555553 33344444333 23456689999999999886
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.1e-12 Score=107.75 Aligned_cols=234 Identities=9% Similarity=0.003 Sum_probs=128.3
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC--
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD----AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI-NPD-- 94 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-- 94 (405)
+......+...|++++|...+++++...+ ..+ ..++..+...+...|++++|...+++...... ..+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 90 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELP------PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 90 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCC------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCC------CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence 34455566778888888888888777542 111 22566667777778888888888877654310 011
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--c-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--
Q 035749 95 --VVTYNSVIRGFCYANDSNEAKRLFIEMMDQ----GVQ--P-NVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRP-- 163 (405)
Q Consensus 95 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 163 (405)
..++..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++........
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 123455666777778888777777776542 111 1 23344556666777777777777777766542111
Q ss_pred --CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC-hhhHH-----HHHHHHhhcCChHHHHHHHHHHHhCCCCCc-
Q 035749 164 --NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHN-VFSYS-----ILINGYCKNKEIEGALSLYSEMLSKGIKPT- 234 (405)
Q Consensus 164 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 234 (405)
...++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+.
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch
Confidence 123455566666666777777666666654311111 01111 122334556666666666665544321110
Q ss_pred --hhhHHHHHHHHHccccHHHHHHHHHHH
Q 035749 235 --VVTYNTLFIGLFEIHQVERAFKLFDEM 261 (405)
Q Consensus 235 --~~~~~~l~~~~~~~~~~~~a~~~~~~~ 261 (405)
...+..+...+...|++++|...++..
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 112233344444555555555555444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.7e-13 Score=101.40 Aligned_cols=165 Identities=16% Similarity=0.152 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
..|..+...+...|++++|+..|+++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 80 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 345556666666777777777776666543 3455666666666666777777777776666543 34556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (405)
.+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC
Confidence 666666666666666666666655422 245555556666666666666666666665553 334555555666666666
Q ss_pred CHHHHHHHHHHHHhc
Q 035749 180 RVNRAKELFVSMESM 194 (405)
Q Consensus 180 ~~~~a~~~~~~~~~~ 194 (405)
++++|...++.+.+.
T Consensus 159 ~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 159 RHEEALPHFKKANEL 173 (186)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 666666666655443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-12 Score=99.36 Aligned_cols=167 Identities=18% Similarity=0.069 Sum_probs=130.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
....+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45677788888888899999999888887653 45677888888888888888888888888877633 35677777888
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
.+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887764 5566777778888888888888888888877764 4566777777888888888888
Q ss_pred HHHHHHHHHhC
Q 035749 219 ALSLYSEMLSK 229 (405)
Q Consensus 219 a~~~~~~~~~~ 229 (405)
|...++++...
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88888777654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-12 Score=100.99 Aligned_cols=153 Identities=14% Similarity=-0.021 Sum_probs=103.2
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..|++..+..+. +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 44567777777778888888888888887777653256666767777777778888888888777766433 56667777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--ChhhHHHHH
Q 035749 137 MDELCKNGKMEEASQLLELMIQIGVRPNA-------FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH--NVFSYSILI 207 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 207 (405)
..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...++++.+.. +. +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 777777777777777777777663 3334 345566666666677777777777666553 22 344555555
Q ss_pred HHHhh
Q 035749 208 NGYCK 212 (405)
Q Consensus 208 ~~~~~ 212 (405)
.+|..
T Consensus 161 ~~~~~ 165 (228)
T 4i17_A 161 VLFYN 165 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-13 Score=109.10 Aligned_cols=227 Identities=11% Similarity=0.012 Sum_probs=156.7
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCC-cccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEF-GVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
+|+++++.+.....+....++..+...+...|++++|+..|+++++..... +...+....++..+..++...|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 344444444433323456688999999999999999999999988651000 0002445778999999999999999999
Q ss_pred HHHHHHHhC------C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCccHhhHHHHHHHHHcCCCH
Q 035749 81 ELLLQMKDK------N-INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ------G-VQPNVVTFSVIMDELCKNGKM 146 (405)
Q Consensus 81 ~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~ 146 (405)
+.+++..+. . .+....++..+...+...|++++|...++++.+. + .+....++..+..++...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 999998764 1 1334677889999999999999999999998765 1 122456788899999999999
Q ss_pred HHHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHccCCH------HHHHHHHHHHHhcCCCCChhhHHHHHHHHhh
Q 035749 147 EEASQLLELMIQI-------GVRP-NAFVYNTLMDGFCLTGRV------NRAKELFVSMESMGCKHNVFSYSILINGYCK 212 (405)
Q Consensus 147 ~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (405)
++|...++++.+. ...+ ....+..+...+...+.. ..+...++..... .+....++..+...|..
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~ 264 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYRR 264 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHH
Confidence 9999999998764 1122 223344444444333332 2222222222211 13345678889999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 035749 213 NKEIEGALSLYSEMLSK 229 (405)
Q Consensus 213 ~~~~~~a~~~~~~~~~~ 229 (405)
.|++++|...+++..+.
T Consensus 265 ~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 265 QGKLEAAHTLEDCASRN 281 (283)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999998763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=107.15 Aligned_cols=234 Identities=13% Similarity=0.017 Sum_probs=162.7
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCc-ccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCCChHHHHHH
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFG-VVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK------N-INPDVVTYNSV 101 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 101 (405)
...|++++|+..|+++++...... ...+....++..+...+...|++++|+..++++.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456777777777777665210000 002446778999999999999999999999998754 1 13346678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------C-CCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc------C-CCCCHHH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQ------G-VQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI------G-VRPNAFV 167 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 167 (405)
...+...|++++|...+++.... . .+....++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1234677888999999999999999999998875 1 1223567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcC-------C-CCChhhHHHHHHHHhhcCChHHHHH------HHHHHHhCCCCC
Q 035749 168 YNTLMDGFCLTGRVNRAKELFVSMESMG-------C-KHNVFSYSILINGYCKNKEIEGALS------LYSEMLSKGIKP 233 (405)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~-~~~~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~~~~~~ 233 (405)
+..+..++...|++++|...++++.+.. . +.....+..+...+...+....+.. .+..... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 8889999999999999999999987641 1 1223334444444443333322222 2221111 1122
Q ss_pred chhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 234 TVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
...++..+...+...|++++|...+++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457788899999999999999999988754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.44 E-value=5.5e-10 Score=97.94 Aligned_cols=356 Identities=9% Similarity=-0.060 Sum_probs=208.5
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhC-CC-CCChHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF-VDKAKELLLQMKDK-NI-NPDVVT 97 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~ 97 (405)
+|...+..+-. |+++.+..+|++++.. .|+...|...+....+.+. .+....+|+..... |. +.+...
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--------~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--------SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--------CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence 34444444433 7888888899888874 3578888888877777663 35566777776653 32 346677
Q ss_pred HHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc-------------CCCHHHHHHHHHHHHHcC
Q 035749 98 YNSVIRGFC----YANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK-------------NGKMEEASQLLELMIQIG 160 (405)
Q Consensus 98 ~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~ 160 (405)
|...+..+. ..++.+.+.++|++.+......-...|......-.. .+.+..|..+++.+...-
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 777776543 245677888888888864221111222222111100 112233344444433210
Q ss_pred CCCCHHHHHHHHHHHHccC----C---HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC
Q 035749 161 VRPNAFVYNTLMDGFCLTG----R---VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP 233 (405)
Q Consensus 161 ~~~~~~~~~~l~~~~~~~~----~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 233 (405)
-..+...|...+..-...+ + .+.+..+|+++.... +.++..|...+..+.+.|+.+.|..++++.... |
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P 243 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---S 243 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---C
Confidence 0113345555555432211 1 345677888887754 566778888888888899999999999998886 3
Q ss_pred chhhHHHHHHHHHccccHHHHHHHHHHHHHcC------------CCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCC
Q 035749 234 TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG------------VAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKC 301 (405)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 301 (405)
....+.. .|....+.++. ++.+...- .......+...+....+.++.+.|..+|+++ ...
T Consensus 244 ~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~- 315 (493)
T 2uy1_A 244 DGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE- 315 (493)
T ss_dssp CSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-
T ss_pred CcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-
Confidence 3332211 12211111111 22222110 0111234555566666678899999999988 322
Q ss_pred CccHHHHHHHHHHHHhcC-CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 035749 302 ELDIRSYSCLIDGLCKSG-RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNT 380 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 380 (405)
+.+..+|...+..-...+ +++.|..+|+...+.. +.++..|...+......|+.+.|..+|+++. .....|..
T Consensus 316 ~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~ 389 (493)
T 2uy1_A 316 GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDS 389 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHH
Confidence 234455544333333333 6899999998877642 2234556667777778899999999998873 24667777
Q ss_pred HHHHHHccCchhHHHHHHHHhhh
Q 035749 381 LMLGCIRNNETSKVVELLHRMDE 403 (405)
Q Consensus 381 l~~~~~~~g~~~~a~~~~~~~~~ 403 (405)
.+..-...|+.+.+..++++..+
T Consensus 390 ~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777778999888888887653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-11 Score=98.75 Aligned_cols=191 Identities=8% Similarity=-0.079 Sum_probs=120.3
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CC
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NP 93 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 93 (405)
+.+...+..+...+.+.|++++|+..|+++++..+. .+....++..+..++.+.|++++|+..|+++.+... +.
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT----HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 345667788888899999999999999999987521 011267888999999999999999999999987631 12
Q ss_pred ChHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH
Q 035749 94 DVVTYNSVIRGFCY--------ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNA 165 (405)
Q Consensus 94 ~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 165 (405)
....+..+..++.. .|++++|+..|+++++..+. +......+... ..+... ..
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~ 148 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LA 148 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HH
Confidence 24567778888888 89999999999998876322 22222111000 000000 01
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHhhc----------CChHHHHHHHHHHHhC
Q 035749 166 FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH--NVFSYSILINGYCKN----------KEIEGALSLYSEMLSK 229 (405)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 229 (405)
..+..+..+|...|++++|+..|+.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 113445556666666666666666665542111 223455555555544 5666666666666654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-11 Score=100.04 Aligned_cols=241 Identities=12% Similarity=0.028 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHCCCCccHhhHHHHHHHHHcC-C-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 035749 113 EAKRLFIEMMDQGVQPNVVTFSVIMDELCKN-G-KMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVS 190 (405)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 190 (405)
+|.+++.+..+. .+++...| .+ +... + ++++|...+++. +..|...|++++|...|.+
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KL---FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hh---cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 566777777665 23222223 22 2221 2 488888888776 3456778999999999888
Q ss_pred HHhc----CCCC-ChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCC---CC--chhhHHHHHHHHHcc-ccHHHHHHHHH
Q 035749 191 MESM----GCKH-NVFSYSILINGYCKNKEIEGALSLYSEMLSKGI---KP--TVVTYNTLFIGLFEI-HQVERAFKLFD 259 (405)
Q Consensus 191 ~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~ 259 (405)
..+. +.++ ...+|+.+..+|...|++++|+..+++.+.... .+ ...++..+...|... |++++|+..|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 7654 2111 245788888899999999999999988776310 11 134677778888885 88888888888
Q ss_pred HHHHcCCCc-c----HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccH------HHHHHHHHHHHhcCCHHHHHHHH
Q 035749 260 EMQRHGVAA-D----TWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDI------RSYSCLIDGLCKSGRLKIAWELF 328 (405)
Q Consensus 260 ~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~ 328 (405)
+..+..... + ..++..+...+...|++++|+..++++......... ..+..++.++...|++++|...|
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 877642100 1 345677788888888888888888888775422211 25677777888888888888888
Q ss_pred hhccCCCcCccHH------HHHHHHHHHH--cCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 035749 329 HSLPRGVLIADVV------TYNIMIHALC--ADGKMDKAHDLFLDMEAKGVAPDCVAFN 379 (405)
Q Consensus 329 ~~~~~~~~~~~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 379 (405)
++..+. .|+.. .+..++.++. ..+++++|+..|+++. ..++..-.
T Consensus 223 ~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~----~l~~~~~~ 275 (292)
T 1qqe_A 223 QEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM----RLDKWKIT 275 (292)
T ss_dssp HGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS----CCCHHHHH
T ss_pred HHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC----ccHHHHHH
Confidence 888764 23211 2334455554 3456777777775554 34665433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-10 Score=91.60 Aligned_cols=245 Identities=11% Similarity=0.025 Sum_probs=155.2
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
++-..-.|++..++.-. .+..+ .........+.++++..|++... ....|....+..+...+
T Consensus 20 ikn~fy~G~yq~~i~e~---~~~~~------~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~ 81 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEI---EKFSK------VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL 81 (310)
T ss_dssp HHHHHTTTCHHHHTHHH---HTSSC------CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHH---HhcCc------cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh
Confidence 56667788998888733 32221 11223444456777878877642 11233433444444433
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHH
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV-RPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
..+ |+..++++...+ .++..++..+..++...|++++|++++.+.+..+. .-+...+...+.++.+.|+.+.|
T Consensus 82 -~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A 155 (310)
T 3mv2_B 82 -DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTA 155 (310)
T ss_dssp -TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred -ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHH
Confidence 322 677777776654 34555556777888888888888888888776642 13566777788888888888888
Q ss_pred HHHHHHHHhcCCCC-----ChhhHHHHHHH--Hh--hcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHH
Q 035749 185 KELFVSMESMGCKH-----NVFSYSILING--YC--KNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAF 255 (405)
Q Consensus 185 ~~~~~~~~~~~~~~-----~~~~~~~l~~~--~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 255 (405)
.+.++.|.+. .| +..+...++.+ .. ..+++.+|..+|+++... .|+..+...++.++...|++++|.
T Consensus 156 ~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 156 STIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHH
Confidence 8888888776 44 24444444444 22 233788888888887665 344333334444778888888888
Q ss_pred HHHHHHHHcC---------CCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 035749 256 KLFDEMQRHG---------VAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK 300 (405)
Q Consensus 256 ~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 300 (405)
..++.+.+.. -+.++.++..++......|+ +|.++++++.+..
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 8888665421 14466666566555555666 7778888887764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-11 Score=94.80 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=66.7
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHH----------------HHHHHHhcCChHHHHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTT----------------IIDGLCKEGFVDKAKE 81 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~ 81 (405)
+...+......+...|++++|+..|+++++.+ |.++..|.. +..++.+.|++++|+.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-------IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455666778889999999999999999865 344555655 5555555555555555
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (405)
.|++..+.. |.+...+..+..++...|++++|+..|++.++..+. +..++..+..++.
T Consensus 76 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 76 FYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 555554442 334445555555555555555555555555444222 3444444444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.3e-12 Score=115.29 Aligned_cols=174 Identities=10% Similarity=-0.005 Sum_probs=147.1
Q ss_pred HhcCchHHHHHHHHHHH--------cCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 30 CRTGHTIVALNLFEEMI--------NGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
...|++++|++.+++++ +.. +.+...+..+...+...|++++|+..|+++.+.+ +.+...|..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-------SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHH
Confidence 78999999999999998 543 5677899999999999999999999999998864 5678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (405)
..++...|++++|+..|++.++..+. +...+..+..++...|++++ +..|+++++.+ +.+...+..+..++...|++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999987543 67788889999999999999 99999999875 56778899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 035749 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (405)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (405)
++|...|+++.+.+ +.+...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99999999988764 4456677777777766555
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-10 Score=92.42 Aligned_cols=249 Identities=10% Similarity=0.013 Sum_probs=161.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRV 181 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 181 (405)
++-..-.|.+..++.-. .+............+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 34455678888887733 2222222223334456777777776531 11234443444444433 322
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCC-CCchhhHHHHHHHHHccccHHHHHHHHHH
Q 035749 182 NRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPTVVTYNTLFIGLFEIHQVERAFKLFDE 260 (405)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 260 (405)
++..++++.+.+ +++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777776654 45566666888888888999999999988877643 23556777788888899999999999998
Q ss_pred HHHcCCCc-----cHHHHHHHHHHH--hcCC--ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 035749 261 MQRHGVAA-----DTWAYRTFIDGL--CKNG--YIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSL 331 (405)
Q Consensus 261 ~~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 331 (405)
|.+. .| +..+...++.++ ...| ++.+|..+|+++... .|+......+..++...|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8775 45 355556666553 2233 888999999998665 344233333334788889999999998876
Q ss_pred cCCC---------cCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 035749 332 PRGV---------LIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCV 376 (405)
Q Consensus 332 ~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 376 (405)
.+.. -+.++.++..++......|+ +|.+++.++.+. .|+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 5421 13366677667766666776 888888888885 45443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-10 Score=90.38 Aligned_cols=176 Identities=11% Similarity=-0.009 Sum_probs=118.6
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcC----ChH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEG----FVD 77 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~ 77 (405)
+|++.|+...+.| ++.++..+...+...+++++|+.+|+++.+.+ ++..+..+...|.. + +++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHc-CCCCCCHH
Confidence 5777777777654 56677777777777788888888888877643 45666667766666 5 777
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-ccHhhHHHHHHHHHc----CCCHHH
Q 035749 78 KAKELLLQMKDKNINPDVVTYNSVIRGFCY----ANDSNEAKRLFIEMMDQGVQ-PNVVTFSVIMDELCK----NGKMEE 148 (405)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 148 (405)
+|+..|++..+.+ ++..+..|...|.. .+++++|+.+|++..+.+.. .+...+..+...|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 8888887777654 56677777777766 67777777777777766432 125566666666666 667777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHhcC
Q 035749 149 ASQLLELMIQIGVRPNAFVYNTLMDGFCLT-G-----RVNRAKELFVSMESMG 195 (405)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 195 (405)
|..+|++..+. +.+...+..+..+|... | ++++|..+|+...+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777777665 22344555566665432 2 6777777777776665
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.2e-11 Score=94.82 Aligned_cols=212 Identities=9% Similarity=-0.022 Sum_probs=145.1
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--ccHh
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD---VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ--PNVV 131 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 131 (405)
+.++..+..+...+.+.|++++|+..|+++.+.. |.+ ...+..+..++...|++++|+..|+++++..+. ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4567788888888888999999999999888763 333 667788888888899999999999888875321 1245
Q ss_pred hHHHHHHHHHc--------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhH
Q 035749 132 TFSVIMDELCK--------NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSY 203 (405)
Q Consensus 132 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (405)
.+..+..++.. .|++++|...|+++++.. +.+......+.. +..+... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 56677777777 888888888888887763 222222222111 1111110 11225
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCCC--chhhHHHHHHHHHcc----------ccHHHHHHHHHHHHHcCCCcc--
Q 035749 204 SILINGYCKNKEIEGALSLYSEMLSKGIKP--TVVTYNTLFIGLFEI----------HQVERAFKLFDEMQRHGVAAD-- 269 (405)
Q Consensus 204 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~-- 269 (405)
..+...|.+.|++++|+..|++++...... ....+..+..++... |++++|...++++.+.. |.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~ 230 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-PDSPL 230 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-TTCTH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-CCChH
Confidence 677889999999999999999998863221 234677777888766 89999999999999864 222
Q ss_pred -HHHHHHHHHHHhcCCChHHH
Q 035749 270 -TWAYRTFIDGLCKNGYIVEA 289 (405)
Q Consensus 270 -~~~~~~l~~~~~~~~~~~~a 289 (405)
......+...+...++++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 23445555555555555544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6.2e-12 Score=91.75 Aligned_cols=146 Identities=10% Similarity=0.015 Sum_probs=98.2
Q ss_pred HHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 035749 25 LINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRG 104 (405)
Q Consensus 25 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (405)
|...+...|++++|+..++.+.... |.++..+..+...|.+.|++++|++.|++..+.. |.++.+|..+..+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 74 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLL 74 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455566777888888888876643 3345566677778888888888888888877764 5567777778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQL-LELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (405)
+...|++++|+..|++.++..+. +..++..+..++.+.|+++++.+. +++..+.. |.++.+|......+...|+
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHcCchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 88888888888888777776433 566777777777777777655443 46666654 4455666666666555553
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.1e-11 Score=97.17 Aligned_cols=233 Identities=13% Similarity=0.033 Sum_probs=139.1
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhc--C-chHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRT--G-HTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDK 78 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (405)
+|.+++.+..+. .+++...| .+. +. + ++++|...|+++. ..+...|++++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~a~---------------------~~~~~~g~~~~ 55 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF----SGSDSYKFEEAADLCVQAA---------------------TIYRLRKELNL 55 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH----SCCSHHHHHHHHHHHHHHH---------------------HHHHHTTCTHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc----CCCCCccHHHHHHHHHHHH---------------------HHHHHcCCHHH
Confidence 566667666665 23322223 221 22 2 4667777666652 23556677777
Q ss_pred HHHHHHHHHhC----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCc-cHhhHHHHHHHHHcC-CCHH
Q 035749 79 AKELLLQMKDK----NINP-DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQG----VQP-NVVTFSVIMDELCKN-GKME 147 (405)
Q Consensus 79 a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~-~~~~ 147 (405)
|.+.|++..+. +.++ ...+|+.+..+|...|++++|+..|++.++.. -.. ...++..+..+|... |+++
T Consensus 56 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~ 135 (292)
T 1qqe_A 56 AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA 135 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH
Confidence 77777765432 2111 14567777777777777777777777665431 110 134667777777775 8888
Q ss_pred HHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHhhcCCh
Q 035749 148 EASQLLELMIQIGVRP-N----AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNV------FSYSILINGYCKNKEI 216 (405)
Q Consensus 148 ~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 216 (405)
+|+..+++.++..... + ..++..+...+...|++++|+..|++..+....... ..+..+..++...|++
T Consensus 136 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence 8888887776542100 1 345677777888888888888888887765422211 1456667777788888
Q ss_pred HHHHHHHHHHHhCCCCCch------hhHHHHHHHHH--ccccHHHHHHHHHHHHH
Q 035749 217 EGALSLYSEMLSKGIKPTV------VTYNTLFIGLF--EIHQVERAFKLFDEMQR 263 (405)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 263 (405)
++|+..|++.... .|+. ..+..++.++. ..+++++|+..|+.+..
T Consensus 216 ~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 216 VAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 8888888877664 2221 12334445553 45667777777766654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-10 Score=90.22 Aligned_cols=125 Identities=13% Similarity=0.055 Sum_probs=67.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (405)
+..++...|++++|+..+++.++.. +.+...+..+..++...|++++|...|+++.+.. |.+..++..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 5566666666666666666666654 4455666666666666666666666666666654 4455566666655544432
Q ss_pred --hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 216 --IEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 216 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
...+...+..... ..|....+.....++...|++++|...|+++++.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2333444443322 1222222333344445556666666666666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-10 Score=83.61 Aligned_cols=130 Identities=13% Similarity=0.215 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
+|..+...+...|++++|..+|+++.+.. +.+...+..++..+...|++++|...++++.+.+ +.+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHH
Confidence 45556666666666666666666666543 3345566666666666666666666666665543 334555556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++.+.+.
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 66666666666666666666655422 23445555555555666666666665555543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.35 E-value=7.5e-09 Score=90.78 Aligned_cols=342 Identities=12% Similarity=0.023 Sum_probs=218.0
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCc-hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHH----hcCC
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGH-TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLC----KEGF 75 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 75 (405)
+.|..+|++.+.. .|+...|...+....+.++ .+....+|+.++..-+. .+.+...|...+..+. .+++
T Consensus 31 e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~----d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 31 RSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN----YWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp HHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT----CTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred HHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC----CcccHHHHHHHHHHHHhchhhhHH
Confidence 3578899999885 5799999999988877764 45678889988865210 1456788888887654 3567
Q ss_pred hHHHHHHHHHHHhCCCCCC--hHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH
Q 035749 76 VDKAKELLLQMKDKNINPD--VVTYNSVIRGFCY-------------ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL 140 (405)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (405)
.+.+..+|++.... |+. ...|......-.. .+.+..|..+++.+...-...+...|...+..-
T Consensus 105 ~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 105 IEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp HHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 88999999999874 332 1222222211111 112333444454443210011333555554443
Q ss_pred HcC--CC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc
Q 035749 141 CKN--GK-----MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN 213 (405)
Q Consensus 141 ~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (405)
... |- .+.+..+|++++... +.+...|...+..+...|+.+.|..++++.... |.+...+.. |...
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~ 255 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLV 255 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhh
Confidence 222 11 355778999988864 667888988899899999999999999999987 444433332 2221
Q ss_pred CChHHHHHHHHHHHhC---C------CCC---chhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHh
Q 035749 214 KEIEGALSLYSEMLSK---G------IKP---TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLC 281 (405)
Q Consensus 214 ~~~~~a~~~~~~~~~~---~------~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 281 (405)
.+.++. ++.+.+. . ..+ ....|...+....+.++.+.|..+|..+ ... ..+...+...+..-.
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 111222 2222211 0 001 1234555555566778899999999999 321 234444433333222
Q ss_pred cC-CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHH
Q 035749 282 KN-GYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAH 360 (405)
Q Consensus 282 ~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 360 (405)
.. ++.+.|..+|+...+.. +.++..+...+......|+.+.|..+|+++.+ ....|...+..-...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHH
Confidence 23 36999999999998763 34455667778878889999999999999843 5778888888777889999999
Q ss_pred HHHHHHHh
Q 035749 361 DLFLDMEA 368 (405)
Q Consensus 361 ~~~~~~~~ 368 (405)
.+++++..
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988874
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.9e-11 Score=97.34 Aligned_cols=167 Identities=15% Similarity=0.021 Sum_probs=107.8
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhh-HHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVT-FSV 135 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 135 (405)
+.+...+..+...+...|++++|...|+++.+.. |.+...+..+...+...|++++|...++++.... |+... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3455666667777777777777777777776653 4456677777777777777777777777765542 23222 222
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHhhcC
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCK-HNVFSYSILINGYCKNK 214 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 214 (405)
....+...++.+.|...+++..+.. +.+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2223455566666777777776664 556667777777777777777777777777665311 12556777777777777
Q ss_pred ChHHHHHHHHHHH
Q 035749 215 EIEGALSLYSEML 227 (405)
Q Consensus 215 ~~~~a~~~~~~~~ 227 (405)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7777777776654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-09 Score=88.91 Aligned_cols=217 Identities=13% Similarity=0.023 Sum_probs=164.4
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcC--chHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHH----Hhc-
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTG--HTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGL----CKE- 73 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 73 (405)
++|+..++.++... |-+..+|+....++...| ++++++..++.++..+ |.+..+|+.-..++ ...
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-------Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-------EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-------TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-------cccHHHHHHHHHHHHHHHHhcc
Confidence 37889999998875 455678999999999999 9999999999999986 45566666665555 445
Q ss_pred --CChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCC----
Q 035749 74 --GFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSN--EAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGK---- 145 (405)
Q Consensus 74 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 145 (405)
+++++++.+++.+.+.. +-+..+|+.-...+...|.++ ++++.++++++..+. |..+|+.....+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 78999999999998875 668888888888888888888 999999999887655 77788877777777666
Q ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHhcC--CCCChhhHHHHHHHHhhcCChHHHH
Q 035749 146 --MEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN-RAKELFVSMESMG--CKHNVFSYSILINGYCKNKEIEGAL 220 (405)
Q Consensus 146 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (405)
++++++.++.++... +-|...|+.+...+.+.|+.. .+..+..++.+.+ .+.++..+..++..|.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 788888888887775 667777777777777777633 3445555554432 1345667777777777777778888
Q ss_pred HHHHHHHh
Q 035749 221 SLYSEMLS 228 (405)
Q Consensus 221 ~~~~~~~~ 228 (405)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877765
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-10 Score=81.34 Aligned_cols=130 Identities=13% Similarity=0.211 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (405)
.+..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++...+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 45666667777777777777777776553 34566666677777777777777777777665532 24555666666666
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 142 KNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
..|++++|.+.++.+.+.. +.+...+..++.++...|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777776666653 344555666666666666666666666666554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.33 E-value=5e-09 Score=85.06 Aligned_cols=227 Identities=9% Similarity=-0.017 Sum_probs=154.6
Q ss_pred HHHHHhcCch-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 035749 26 INGLCRTGHT-IVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEG--FVDKAKELLLQMKDKNINPDVVTYNSVI 102 (405)
Q Consensus 26 ~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (405)
+.+..+.|.+ ++|+..++.++..+ |.+..+|+.-..++...+ +++++++.++.+...+ |-+..+|+.-.
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n-------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~ 110 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL-------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQ 110 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHH
Confidence 3334455554 68999999999876 556778888888888888 8999999999988775 44566666554
Q ss_pred HHH----Hhc---CCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035749 103 RGF----CYA---NDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKME--EASQLLELMIQIGVRPNAFVYNTLMD 173 (405)
Q Consensus 103 ~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (405)
..+ ... +++++++.+++.+.+..++ +..+|+.-..++.+.|.++ +++..++++++.+ +.+...|+....
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ 188 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFF 188 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 444 444 6788888888888877544 7777777777777777777 8888888888775 556777776666
Q ss_pred HHHccCC------HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH-HHHHHHHHHhCC--CCCchhhHHHHHHH
Q 035749 174 GFCLTGR------VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG-ALSLYSEMLSKG--IKPTVVTYNTLFIG 244 (405)
Q Consensus 174 ~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~ 244 (405)
.....+. ++++++.++.+.... +.+..+|+.+...+.+.|+... +..+..++...+ -+.+...+..++..
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 6666665 777777777777665 5567777777666666665333 344444444321 12244455555556
Q ss_pred HHccccHHHHHHHHHHHHH
Q 035749 245 LFEIHQVERAFKLFDEMQR 263 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~ 263 (405)
+.+.|+.++|.++++.+.+
T Consensus 268 ~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 268 YTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHh
Confidence 6666666666666666654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-11 Score=108.74 Aligned_cols=174 Identities=9% Similarity=-0.069 Sum_probs=143.1
Q ss_pred HccCCHHHHHHHHHHHH--------hcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHc
Q 035749 176 CLTGRVNRAKELFVSME--------SMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFE 247 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 247 (405)
...|++++|++.++++. +.. +.+...+..+...+...|++++|+..|+++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999987 443 5567788888999999999999999999998863 3366788888899999
Q ss_pred cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 035749 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWEL 327 (405)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 327 (405)
.|++++|...|+++.+.. +.+...+..+..++.+.|++++ ...|+++.+.. +.+...+..++.++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998875 5567788889999999999999 99999998876 66788899999999999999999999
Q ss_pred HhhccCCCcCccHHHHHHHHHHHHcCCC
Q 035749 328 FHSLPRGVLIADVVTYNIMIHALCADGK 355 (405)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 355 (405)
|+++.+... .+...+..+..++...++
T Consensus 557 ~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 999987532 246777778888766555
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.9e-10 Score=85.77 Aligned_cols=176 Identities=13% Similarity=0.022 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCC----CHHHHHHHH
Q 035749 78 KAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNG----KMEEASQLL 153 (405)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 153 (405)
+|++.|++..+.| ++..+..+...+...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566666666654 66677777777777777777777777777654 44555666666665 5 677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHhh----cCChHHHHHHHH
Q 035749 154 ELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESMGCK-HNVFSYSILINGYCK----NKEIEGALSLYS 224 (405)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 224 (405)
++..+.+ +...+..+..+|.. .+++++|..+|++..+.+.. ..+.++..|...|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 45566666666665 66777777777777665411 125566666666666 566777777777
Q ss_pred HHHhCCCCCchhhHHHHHHHHHcc-c-----cHHHHHHHHHHHHHcC
Q 035749 225 EMLSKGIKPTVVTYNTLFIGLFEI-H-----QVERAFKLFDEMQRHG 265 (405)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 265 (405)
+..+. ..+...+..+...|... | ++++|...|+...+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 76664 12333455555555432 2 5666666666666655
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.8e-10 Score=87.99 Aligned_cols=188 Identities=10% Similarity=-0.068 Sum_probs=125.3
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh--
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV-- 95 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 95 (405)
++..+..+...+...|++++|+..|+++++..+. .+.....+..++.++.+.|++++|+..|+++.+.. |.+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~ 77 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPF----GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNI 77 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcH
Confidence 4456777888899999999999999999986521 11235688889999999999999999999998764 2222
Q ss_pred -HHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 035749 96 -VTYNSVIRGFCY------------------ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELM 156 (405)
Q Consensus 96 -~~~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 156 (405)
..+..+..++.. .|++++|...|+++++..+. +.......... ..+...+
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~ 146 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL 146 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH
Confidence 245555555543 35666666666666654221 22221111000 0000000
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHhhcCChHHHHHHHHHHHhCC
Q 035749 157 IQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHN---VFSYSILINGYCKNKEIEGALSLYSEMLSKG 230 (405)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 230 (405)
......+...+...|++++|...|+.+.+.. |.+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 --------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112346678888999999999999988763 222 2467788889999999999999999888763
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-10 Score=104.79 Aligned_cols=163 Identities=12% Similarity=0.013 Sum_probs=125.7
Q ss_pred cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH
Q 035749 32 TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS 111 (405)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (405)
.|++++|++.|+++++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRH 73 (568)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 478999999999998875 5668899999999999999999999999999875 55788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCHHHHHHHH
Q 035749 112 NEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLT---GRVNRAKELF 188 (405)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 188 (405)
++|.+.+++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|...+
T Consensus 74 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 74 AEAAVLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 9999999999987433 67888999999999999999999999999885 56778889999999999 9999999999
Q ss_pred HHHHhcCCCCChhhHHH
Q 035749 189 VSMESMGCKHNVFSYSI 205 (405)
Q Consensus 189 ~~~~~~~~~~~~~~~~~ 205 (405)
++..+.+ +.+...+..
T Consensus 152 ~~al~~~-p~~~~~~~~ 167 (568)
T 2vsy_A 152 RAAVAQG-VGAVEPFAF 167 (568)
T ss_dssp HHHHHHT-CCCSCHHHH
T ss_pred HHHHhcC-CcccChHHH
Confidence 9998875 333344433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-10 Score=92.86 Aligned_cols=168 Identities=10% Similarity=-0.030 Sum_probs=139.4
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH-H
Q 035749 92 NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYN-T 170 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 170 (405)
+.+...+..+...+...|++++|...|++.....+. +...+..+..++...|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 556777888999999999999999999999987544 77888999999999999999999999987763 4544333 3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC-chhhHHHHHHHHHccc
Q 035749 171 LMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP-TVVTYNTLFIGLFEIH 249 (405)
Q Consensus 171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 249 (405)
....+...++.++|...+++..... |.+...+..+...+...|++++|+..|.++++..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3334667788888999999998875 6678899999999999999999999999999864221 2567889999999999
Q ss_pred cHHHHHHHHHHHHH
Q 035749 250 QVERAFKLFDEMQR 263 (405)
Q Consensus 250 ~~~~a~~~~~~~~~ 263 (405)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999887654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.30 E-value=5e-11 Score=89.69 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+......+...|++++|+..|+++++.. |.+...+..+..++...|++++|+..++++.... |++..+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~ 78 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSL 78 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHH
Confidence 45566777778888888888888877654 5567778888888888888888888888776553 24443332
Q ss_pred HHHH-HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc
Q 035749 101 VIRG-FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRP-NAFVYNTLMDGFCLT 178 (405)
Q Consensus 101 l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 178 (405)
+... +...+...+|+..+++..+..+. +...+..+..++...|++++|...++++.+....+ +...+..+..++...
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 2211 11222223355666666554322 45556666666666666666666666666553211 234555666666666
Q ss_pred CCHHHHHHHHHHHH
Q 035749 179 GRVNRAKELFVSME 192 (405)
Q Consensus 179 ~~~~~a~~~~~~~~ 192 (405)
|+.++|...|++..
T Consensus 158 g~~~~A~~~y~~al 171 (176)
T 2r5s_A 158 GQGNAIASKYRRQL 171 (176)
T ss_dssp CSSCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 66666666665543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=89.28 Aligned_cols=146 Identities=11% Similarity=-0.121 Sum_probs=101.8
Q ss_pred HHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 035749 241 LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR 320 (405)
Q Consensus 241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 320 (405)
|...+...|++++|+..+....... +.++..+..+...|.+.|++++|...++++.+.. |.+..++..++.+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 4455566778888888887776542 2334456667778888888888888888887775 5677788888888888888
Q ss_pred HHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHccCc
Q 035749 321 LKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDL-FLDMEAKGVAPDCVAFNTLMLGCIRNNE 390 (405)
Q Consensus 321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (405)
+++|...|+++.+..+ -+..+|..+...|.+.|++++|.+. ++++.+. .+-++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-STTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCc
Confidence 8888888888776422 2567788888888888888766554 5777775 23356666666666666664
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-10 Score=102.07 Aligned_cols=150 Identities=8% Similarity=-0.041 Sum_probs=122.3
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|++.|++..+.. +.+...|..+...+...|++++|++.|+++++.. +.+...+..+..++...|++++|.
T Consensus 6 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 6 PRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-------PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 47888999888764 4567889999999999999999999999999976 567889999999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC---CCHHHHHHHHHHHH
Q 035749 81 ELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN---GKMEEASQLLELMI 157 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 157 (405)
+.+++..+.. +.+...+..+..++...|++++|.+.|++..+.... +...+..+..++... |++++|.+.+++..
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999998874 557889999999999999999999999999887443 677888899999999 99999999999998
Q ss_pred HcC
Q 035749 158 QIG 160 (405)
Q Consensus 158 ~~~ 160 (405)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.3e-11 Score=88.20 Aligned_cols=164 Identities=13% Similarity=0.018 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH-
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE- 139 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 139 (405)
..+..+...+...|++++|...|++..+.. |.+...+..+...+...|++++|+..+++.....+ +...+......
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 345666777888888888888888876653 45677888888888888888888888888765532 33333222211
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHhhcCChHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH-NVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 218 (405)
+...+....+...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 112122234566777776653 4456677777777777777777777777777654221 24466777777777777777
Q ss_pred HHHHHHHHHh
Q 035749 219 ALSLYSEMLS 228 (405)
Q Consensus 219 a~~~~~~~~~ 228 (405)
|...|++.+.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.2e-09 Score=83.28 Aligned_cols=188 Identities=8% Similarity=-0.073 Sum_probs=124.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH--hhHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNIN-P-DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNV--VTFS 134 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 134 (405)
++..+..++..+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|+..|+++++..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3556777788899999999999999999875311 1 1357888889999999999999999999876433111 2444
Q ss_pred HHHHHHHc------------------CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 035749 135 VIMDELCK------------------NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGC 196 (405)
Q Consensus 135 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 196 (405)
.+..++.. .|++++|...|+++++.. |.+.......... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH-----
Confidence 44545443 345566666666655542 1122111111100 0000000
Q ss_pred CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC--chhhHHHHHHHHHccccHHHHHHHHHHHHHcC
Q 035749 197 KHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP--TVVTYNTLFIGLFEIHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 265 (405)
......+...|.+.|++++|+..|+++++..... ....+..+..++.+.|++++|...++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112356778999999999999999999863211 12467788999999999999999999988764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-09 Score=89.68 Aligned_cols=94 Identities=6% Similarity=-0.127 Sum_probs=41.7
Q ss_pred HHHHHHHHHccccHHHHHHHHHHHHHcCC---Cc--cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC----CCcc-HHH
Q 035749 238 YNTLFIGLFEIHQVERAFKLFDEMQRHGV---AA--DTWAYRTFIDGLCKNGYIVEALELFRTLRILK----CELD-IRS 307 (405)
Q Consensus 238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~ 307 (405)
+..+...|.. |++++|+..+++..+... .+ ...++..+...+...|++++|+..++++.... ..+. ...
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 3344444444 555555555544433210 00 02334444555555555555555555544321 0011 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcc
Q 035749 308 YSCLIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
+..++.++...|++++|...|++..
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4444445555555666655555554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-09 Score=88.55 Aligned_cols=161 Identities=9% Similarity=-0.021 Sum_probs=74.7
Q ss_pred hcCchHHHHHHHHHHHcCCCC--Cc--ccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---C--CChHHHHHH
Q 035749 31 RTGHTIVALNLFEEMINGNGE--FG--VVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI---N--PDVVTYNSV 101 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~~l 101 (405)
..|++++|.++++++.+.... +. .....-...|...+..+...|++++|...|.+..+... . .-..+|..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356777888888777653210 00 00001122444445555566666666666665543210 0 012345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCC-ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-----CHHHHHHH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQ----GVQ-PNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRP-----NAFVYNTL 171 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l 171 (405)
...|...|++++|+..|++.++. |-. ....++..+..+|.. |++++|+..+++.++..... ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 55566666666666666554432 100 012344444445544 55555555555544321000 02334444
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 035749 172 MDGFCLTGRVNRAKELFVSME 192 (405)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~ 192 (405)
..++...|++++|+..|++..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-09 Score=75.95 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
..+......+.+.|++++|++.|+++++.+ |.++.+|..+..++.+.|++++|+..+++.++.+ +.+...|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~ 85 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYI 85 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence 345556666666666666666666666554 3455566666666666666666666666665543 34455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
.+..++...|++++|++.|++.++.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666666666666666666666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=9.5e-10 Score=89.38 Aligned_cols=195 Identities=11% Similarity=-0.034 Sum_probs=115.2
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...+..+...+...|++++|+..|+++++.. |.+...|..+..++.+.|++++|+..+++..+.. +.+...
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKA 74 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHH
Confidence 45667778888888888888888888888765 4567788888888888888888888888887764 556777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
+..+..++...|++++|...|++..+..+. +...+...+....+ ..+... +........+.+......+... .
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~ 147 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--I 147 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--H
Confidence 888888888888888888888877664211 11111111111111 111111 1112222334444443333322 2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc-CChHHHHHHHHHHHh
Q 035749 178 TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN-KEIEGALSLYSEMLS 228 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 228 (405)
.|++++|.+.++...+.. +.+......+...+.+. +.+++|.++|.++.+
T Consensus 148 ~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 466677777666665542 22233333333333333 455666666666544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-07 Score=78.00 Aligned_cols=183 Identities=9% Similarity=-0.018 Sum_probs=133.7
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEG-FVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
+..+-......+..++|++++++++..+ |.+..+|+.-..++...| .+++++..++.+...+ |-+..+|+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~h 128 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHH 128 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 3433344445555678999999999876 556778888888888888 5999999999999875 557788887
Q ss_pred HHHHHHhc-C-CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHH--------HHHHHHHHHHHcCCCCCHHHHHH
Q 035749 101 VIRGFCYA-N-DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKME--------EASQLLELMIQIGVRPNAFVYNT 170 (405)
Q Consensus 101 l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ 170 (405)
-...+... + +++++++.++.+++...+ |..+|+....++.+.|.++ ++++.++++++.. +.+...|+.
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~ 206 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGW 206 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 77777666 6 888999999999887544 7777776665555555554 7888888888875 567777877
Q ss_pred HHHHHHccCC-------HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q 035749 171 LMDGFCLTGR-------VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE 215 (405)
Q Consensus 171 l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (405)
....+.+.++ ++++++.++++.... +.+...|+-+-..+.+.|+
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 7777777665 577778887777764 5566777666655555554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.3e-09 Score=74.47 Aligned_cols=111 Identities=10% Similarity=-0.027 Sum_probs=81.7
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
....+...+..+.+.|++++|++.|++..+.. |.+..+|..+..++...|++++|+..|++.++.++. +...|..+..
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~ 89 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHH
Confidence 45677778888888888888888888877764 556777888888888888888888888887776433 5667777777
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLM 172 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 172 (405)
++...|++++|...|++.++.. |.+......+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 8888888888888888877764 44445544443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-08 Score=83.07 Aligned_cols=209 Identities=11% Similarity=0.043 Sum_probs=135.3
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 035749 8 TKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMK 87 (405)
Q Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (405)
..+......|+..+...+...+.-.- + .++..-... .......+...+..+...|++++|..++++..
T Consensus 35 s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~~~~~~~~-------~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l 102 (293)
T 3u3w_A 35 SRIESGAVYPSMDILQGIAAKLQIPI--I---HFYEVLIYS-------DIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHHTCCT--H---HHHHTTTSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCcCH--H---HHhCCCCCC-------cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 33433334677777777766654321 1 122221111 12334566677778888888888888888877
Q ss_pred hCCC-CCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cc----HhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 88 DKNI-NPDV----VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ-PN----VVTFSVIMDELCKNGKMEEASQLLELMI 157 (405)
Q Consensus 88 ~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (405)
+... .|+. ..+..+...+...+++++|+..+++....... ++ ..+++.+..+|...|++++|...++++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 103 KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6543 3332 23445677777778888888888888774222 12 2357788888888888888888888877
Q ss_pred Hc-----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC----CCC-ChhhHHHHHHHHhhcCC-hHHHHHHHHH
Q 035749 158 QI-----GVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMESMG----CKH-NVFSYSILINGYCKNKE-IEGALSLYSE 225 (405)
Q Consensus 158 ~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 225 (405)
+. +..+ ...++..+..+|...|++++|...+++..+.. ..+ -..+|..+..++.+.|+ +++|.+.+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 41 1111 23467788888888888888888888776531 111 25677888888888884 5888888887
Q ss_pred HHh
Q 035749 226 MLS 228 (405)
Q Consensus 226 ~~~ 228 (405)
...
T Consensus 263 Al~ 265 (293)
T 3u3w_A 263 ASF 265 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-08 Score=79.27 Aligned_cols=129 Identities=13% Similarity=-0.016 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+..+...+...|++++|+..|++++ ++++.++..+..++...|++++|+..|++..+.. +.+...+..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 76 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHH
Confidence 45667778888899999999888773 3467788888888888999999999988887764 557788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCc---------------cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGVQP---------------NVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
+..++...|++++|+..|++..+..... ....+..+..++...|++++|...++++.+..
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888899999998888888753221 12566777778888888888888888887763
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-08 Score=77.51 Aligned_cols=130 Identities=13% Similarity=0.013 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
...+..+...+...|++++|+..|++.. +|+...+..+..++...|++++|+..|++...... .+...+..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHH
Confidence 4456677888889999999999998774 56788999999999999999999999999987643 367788889999
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNA----------------FVYNTLMDGFCLTGRVNRAKELFVSMESMG 195 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (405)
+...|++++|...++++.+.. +.+. ..+..+..++...|++++|...++.+.+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999998863 2222 677888888899999999999999888764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.08 E-value=8e-10 Score=80.03 Aligned_cols=100 Identities=11% Similarity=-0.003 Sum_probs=60.9
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHH
Q 035749 58 PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIM 137 (405)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (405)
.+...+..+...+.+.|++++|+..|+++.... |.+...|..+..++...|++++|+..|++..+..+. +...+..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 345556666666666666666666666666553 445566666666666666666666666666655332 455555666
Q ss_pred HHHHcCCCHHHHHHHHHHHHHc
Q 035749 138 DELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.++...|++++|...|++.++.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666666655
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.07 E-value=7.6e-09 Score=76.74 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+..+...+...|++++|+..|+++++.. +.+..++..+..++...|++++|...+++..+.. +.+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 86 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 34555555556666666666666655543 3345555555555666666666666665555442 334555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
+..++...|++++|...|++..+.
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555555555555555555543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=7.2e-07 Score=73.28 Aligned_cols=218 Identities=10% Similarity=0.051 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc-C-ChHHHHHHH
Q 035749 147 EEASQLLELMIQIGVRPNAFVYNTLMDGFCLTG-RVNRAKELFVSMESMGCKHNVFSYSILINGYCKN-K-EIEGALSLY 223 (405)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~ 223 (405)
++|+++++.++..+ +.+..+|+.-..++...| .+++++.+++.+.... +.+..+|+.-...+... + +++++++.+
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34444444444443 233333444333333444 2444555554444433 33344444333333333 3 444555555
Q ss_pred HHHHhCCCCCchhhHHHHHHHHHccccHH--------HHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC-------hHH
Q 035749 224 SEMLSKGIKPTVVTYNTLFIGLFEIHQVE--------RAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY-------IVE 288 (405)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~ 288 (405)
+++.+.. +-+..+|+.-...+.+.+.++ ++++.+.++++.+ +.|...++.....+.+.+. +++
T Consensus 149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 5554432 223333333333333333333 5556666665554 3455555555555555544 466
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH--------------------HHHHHHHhhccCCC-----cCccHHHH
Q 035749 289 ALELFRTLRILKCELDIRSYSCLIDGLCKSGRL--------------------KIAWELFHSLPRGV-----LIADVVTY 343 (405)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~~~~~~ 343 (405)
+++.++++.... +-|...|+.+-..+.+.|+. .....+...+.... ..+++..+
T Consensus 227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 666666666554 45666666555555554442 33444444444331 13567788
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 344 NIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 344 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
..++..|...|+.++|.++++.+.+.
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 88888888889999999999988754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.8e-09 Score=86.61 Aligned_cols=193 Identities=11% Similarity=-0.028 Sum_probs=94.9
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 035749 130 VVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILING 209 (405)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 209 (405)
...+..+...+...|++++|...++++++.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555555666666666666666665553 3355556666666666666666666666665543 3445556666666
Q ss_pred HhhcCChHHHHHHHHHHHhCCCCCch-hhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHH
Q 035749 210 YCKNKEIEGALSLYSEMLSKGIKPTV-VTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVE 288 (405)
Q Consensus 210 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 288 (405)
+...|++++|+..|++..... |+. ..+...+....+.. +... +........+.+......+... ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 666666666666666655431 111 01111111111111 1111 1112222223333333333222 2466777
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhc-CCHHHHHHHHhhccC
Q 035749 289 ALELFRTLRILKCELDIRSYSCLIDGLCKS-GRLKIAWELFHSLPR 333 (405)
Q Consensus 289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 333 (405)
|.+.++...+.. +.+......+...+... +.+++|.++|..+.+
T Consensus 154 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777776666543 33333334444444443 556777777766543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.07 E-value=5.7e-08 Score=79.55 Aligned_cols=199 Identities=11% Similarity=0.069 Sum_probs=142.0
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CccH-
Q 035749 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT---YNSVIRGFCYANDSNEAKRLFIEMMDQGV-QPNV- 130 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~- 130 (405)
..|+..+...+...+.-. ++ .++. .....+... +...+..+...|++++|...+++..+... .|+.
T Consensus 42 ~~~~~~~l~~i~~~l~~~--~~---~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~ 112 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIP--II---HFYE----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ 112 (293)
T ss_dssp CCCCHHHHHHHHHHHTCC--TH---HHHH----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCHHHHHHHHHHhCcC--HH---HHhC----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH
Confidence 467778877777765422 11 1221 111222333 33346778899999999999999987532 2232
Q ss_pred ---hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhc-----CCC
Q 035749 131 ---VTFSVIMDELCKNGKMEEASQLLELMIQIGVR-PN----AFVYNTLMDGFCLTGRVNRAKELFVSMESM-----GCK 197 (405)
Q Consensus 131 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~ 197 (405)
..+..+...+...|++++|+..++++.+.... ++ ..+++.+..+|...|++++|...++++.+. +..
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (293)
T 3u3w_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch
Confidence 23345777788889999999999999985322 22 336889999999999999999999998741 111
Q ss_pred -CChhhHHHHHHHHhhcCChHHHHHHHHHHHhC----CCCC-chhhHHHHHHHHHccc-cHHHHHHHHHHHHH
Q 035749 198 -HNVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIKP-TVVTYNTLFIGLFEIH-QVERAFKLFDEMQR 263 (405)
Q Consensus 198 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 263 (405)
....++..+...|.+.|++++|+..+++.++. +..+ -..++..+..++...| ++++|...++++..
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 23447889999999999999999999988753 2122 2567888999999999 46999999998764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-09 Score=79.36 Aligned_cols=126 Identities=14% Similarity=0.054 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
..+...+...+...+.+.+++. .. |.+...+..+...+.+.|++++|+..|++++...+. +...|..+..+
T Consensus 9 ~~~~~~l~~~~~~~~~l~~al~-------l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~ 79 (151)
T 3gyz_A 9 ESISTAVIDAINSGATLKDINA-------IP-DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAI 79 (151)
T ss_dssp CHHHHHHHHHHHTSCCTGGGCC-------SC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHhC-------CC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455666666666555555433 21 335667888888999999999999999999987543 78888899999
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG 195 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (405)
+...|++++|+..|+++.+.. |.+...+..+..++...|++++|...|++..+..
T Consensus 80 ~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 80 YQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999886 5678888999999999999999999999998874
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.9e-09 Score=73.40 Aligned_cols=99 Identities=15% Similarity=0.078 Sum_probs=58.4
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...|..+...+...|++++|+..|+++++.. +.+..++..+..++...|++++|+..+++..+.. +.+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 86 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHH
Confidence 34455666666666666666666666666543 3345566666666666666666666666665542 334555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
+..+..++...|++++|...|++..+.
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 556666666666666666666665544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-07 Score=76.28 Aligned_cols=163 Identities=13% Similarity=0.046 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---cc--H
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDV------VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ---PN--V 130 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 130 (405)
.+...+..+...|++++|.+.+++..+... ... ..+..+...+...|++++|+..+++....... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344445555555666666665555544321 111 11222333444455555555555555432110 00 2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC----CC-C
Q 035749 131 VTFSVIMDELCKNGKMEEASQLLELMIQI--GVRPN----AFVYNTLMDGFCLTGRVNRAKELFVSMESMGC----KH-N 199 (405)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-~ 199 (405)
.+++.+...|...|++++|...++++.+. ..+.+ ..++..+..+|...|++++|...+++..+... .. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 24444555555555555555555554421 00110 13444445555555555555555554433210 00 1
Q ss_pred hhhHHHHHHHHhhcCChHHH-HHHHHH
Q 035749 200 VFSYSILINGYCKNKEIEGA-LSLYSE 225 (405)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a-~~~~~~ 225 (405)
..+|..+...|.+.|++++| ...+++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 23344444445555555544 333443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-08 Score=74.11 Aligned_cols=130 Identities=11% Similarity=-0.022 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+... .+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4567777777888888888888888877653 44677777778888888888888888887776532 256667777777
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHccCCHHHHHHHHHHHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNAFVYNT--LMDGFCLTGRVNRAKELFVSME 192 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~ 192 (405)
+...|++++|...++++.+.. +.+...+.. .+..+...|++++|...+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777778888887777777664 334444432 3333556677777777666553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-08 Score=71.10 Aligned_cols=98 Identities=13% Similarity=0.208 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHH
Confidence 3455566666666666666666666666543 3345556666666666666666666666665543 3345555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
..+...+...|++++|...++++.+.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56666666666666666666665554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.9e-09 Score=75.55 Aligned_cols=111 Identities=9% Similarity=-0.042 Sum_probs=87.0
Q ss_pred HHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 035749 40 NLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFI 119 (405)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 119 (405)
..|+++++.. |.+...+..+...+...|++++|+..|++..... |.+...|..+..++...|++++|+..|+
T Consensus 8 ~~~~~al~~~-------p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 8 GTIAMLNEIS-------SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp CSHHHHTTCC-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHcCC-------HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3456666543 4566778888888888899999999888887764 5577888888888888888888888888
Q ss_pred HHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 120 EMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
+.+...+. +...+..+..++...|++++|...|++.++.
T Consensus 80 ~al~l~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 80 YGAVMDIX-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88876433 5677777888888888888888888888775
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=90.54 Aligned_cols=137 Identities=9% Similarity=-0.083 Sum_probs=89.6
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccc--------ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVV--------CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
+...|..+...+.+.|++++|+..|+++++..+..... .+....+|..+..++.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999876211000 0000466667777777777777777777776665
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHH-HHHHHHH
Q 035749 90 NINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEA-SQLLELM 156 (405)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 156 (405)
. +.+...+..+..++...|++++|+..|++.++..+. +...+..+..++...|+.+++ ...++.|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 445666666666777777777777777666665332 455566666666666666655 2344444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-08 Score=70.84 Aligned_cols=121 Identities=8% Similarity=-0.022 Sum_probs=87.6
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHH
Q 035749 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSV 135 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (405)
.+.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.... +...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHH
Confidence 35567788888888888888888888888887763 446777888888888888888888888888775332 5667777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (405)
+..++...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 7777778888888888887777663 334455555555554433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-08 Score=74.09 Aligned_cols=110 Identities=10% Similarity=-0.036 Sum_probs=95.7
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 035749 6 LFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQ 85 (405)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 85 (405)
.|+.+.+.. +.+...+..+...+...|++++|+..|++++..+ |.++..|..+..++...|++++|+..|++
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-------HYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455666543 3356678889999999999999999999999876 56788999999999999999999999999
Q ss_pred HHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 86 MKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
..... |.++..+..+..++...|++++|...|++.++.
T Consensus 81 al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 81 GAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98875 567889999999999999999999999999875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.8e-08 Score=79.09 Aligned_cols=172 Identities=9% Similarity=0.004 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--h
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI---NPD--V 95 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 95 (405)
.+...+..+...|++++|++.+++.++..+.... .......+..+...+...|++++|+..+++..+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445677788999999999999998876521000 001123455567777888999999999999875421 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCc--cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC----CCC-C
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMD---Q-GVQP--NVVTFSVIMDELCKNGKMEEASQLLELMIQIG----VRP-N 164 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 164 (405)
.+++.+...|...|++++|...|++..+ . +..+ ...++..+..+|...|++++|...+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5888999999999999999999999873 2 1111 22578889999999999999999999987642 111 2
Q ss_pred HHHHHHHHHHHHccCCHHHH-HHHHHHHHh
Q 035749 165 AFVYNTLMDGFCLTGRVNRA-KELFVSMES 193 (405)
Q Consensus 165 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 193 (405)
..++..+..+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 777877654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-08 Score=80.32 Aligned_cols=199 Identities=10% Similarity=-0.083 Sum_probs=145.9
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHH-------HHHHHhcCchHHHHHHHHHHHcCCCCCc--------------ccccccH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTL-------INGLCRTGHTIVALNLFEEMINGNGEFG--------------VVCKPDA 60 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~~ 60 (405)
+|++.|.++.+.. |-....|..+ ...+...++..+++..+...++..+... ..+....
T Consensus 24 ~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~ 102 (282)
T 4f3v_A 24 RSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPL 102 (282)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHH
T ss_pred HHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHh
Confidence 6899999999885 4557789888 6777777778888888777776332110 0011124
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc--HhhHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN--VVTFSVIMD 138 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 138 (405)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHH
Confidence 566778888999999999999999887654 433366677778899999999999998665432 221 346777888
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSIL 206 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (405)
++...|++++|+..|++.......|. .........++.+.|+.++|...|+++.... |+...+..|
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 99999999999999999885543243 3466777888899999999999999998874 444444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=90.66 Aligned_cols=143 Identities=11% Similarity=-0.087 Sum_probs=84.0
Q ss_pred cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------hH
Q 035749 32 TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD---------------VV 96 (405)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~ 96 (405)
.+++++|+..|+...+.. +.+...+..+...+.+.|++++|+..|++..+.. +.+ ..
T Consensus 126 L~~~~~A~~~~~~a~~~~-------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHH
Confidence 345556666665544432 3356678888888888888888888888887763 222 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFC 176 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (405)
+|..+..++.+.|++++|+..|++.++..+. +...+..+..++...|++++|...|+++++.. +.+...+..+..++.
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 5555555555556666666655555554322 44555555555555555555555555555543 334445555555555
Q ss_pred ccCCHHHH
Q 035749 177 LTGRVNRA 184 (405)
Q Consensus 177 ~~~~~~~a 184 (405)
..|+.+++
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-08 Score=79.64 Aligned_cols=187 Identities=7% Similarity=-0.092 Sum_probs=132.6
Q ss_pred hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHH-------HHHHHhcCChHHHHHHHHHHHhCCCCCC---------
Q 035749 31 RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTI-------IDGLCKEGFVDKAKELLLQMKDKNINPD--------- 94 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------- 94 (405)
..++...|.+.|.++.+.+ |...+.|..+ ...+...++..+++..++.-... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~ 88 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIG 88 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECC
T ss_pred cCCCHHHHHHHHHHHHHhC-------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccC
Confidence 6899999999999999986 5668899888 57777777777777766665542 221
Q ss_pred -------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 95 -------------VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 95 -------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+..
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~- 165 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP- 165 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-
Confidence 2234456677888899999999988887654 333255566667888888888888887554332
Q ss_pred CCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHhhcCChHHHHHHHHHHHhC
Q 035749 162 RPN--AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH--NVFSYSILINGYCKNKEIEGALSLYSEMLSK 229 (405)
Q Consensus 162 ~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 229 (405)
.|. ...+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++...
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111 2366777788888888888888888877543213 3345566677778888888888888888775
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=7.1e-09 Score=73.33 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
..+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 84 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHH
Confidence 344444455555555555555555554432 2334444455555555555555555555444432 22344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
.+...+...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4444444445555555444444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.5e-07 Score=72.83 Aligned_cols=183 Identities=8% Similarity=-0.050 Sum_probs=126.7
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCc----------hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGH----------TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGL 70 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 70 (405)
++|+..++.++... |-+..+|+.--..+...+. +++++.+++.++..+ |.+..+|+.-.-++
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-------PKny~aW~hR~wlL 118 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------PKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 36888888888774 4455678776666655444 678899999998875 56777888777777
Q ss_pred HhcC--ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC----
Q 035749 71 CKEG--FVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAND-SNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN---- 143 (405)
Q Consensus 71 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 143 (405)
...+ .+++++.+++.+.+.. +.|..+|+.-...+...|. ++++++.++.+++..+. |..+|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 7777 4789999999998875 5678888877777777787 58889999988887554 777777666555443
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----------CCHHHHHHHHHHHHhc
Q 035749 144 ----------GKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLT-----------GRVNRAKELFVSMESM 194 (405)
Q Consensus 144 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~ 194 (405)
+.++++++.+...+... |-|...|+.+-..+... +.++++++.++++.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 34667777777776664 55666665443333333 2345555555555554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=4e-09 Score=79.29 Aligned_cols=123 Identities=7% Similarity=0.121 Sum_probs=94.2
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHH-HHh
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRG-FCY 107 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 107 (405)
+...|++++|+..++++++.. |.+...+..+...+...|++++|...|++..+.. +.+...+..+..+ +..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~ 91 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQ 91 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 356788888888888888765 5567888888888889999999999998887764 4567778888887 778
Q ss_pred cCCH--HHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 108 ANDS--NEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 108 ~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
.|++ ++|...++++.+..+. +...+..+..++...|++++|...++++.+..
T Consensus 92 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 92 ASQHMTAQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cCCcchHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8887 8888888888876433 56777778888888888888888888888764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-08 Score=70.61 Aligned_cols=121 Identities=11% Similarity=-0.028 Sum_probs=83.9
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++.....+ .+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 86 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHH
Confidence 3456677777788888888888888888877653 44667777777777777888888887777776532 245666667
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 035749 137 MDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGR 180 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (405)
..++...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 777777777777777777776664 3455566666666655554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.1e-09 Score=79.79 Aligned_cols=158 Identities=13% Similarity=-0.038 Sum_probs=108.6
Q ss_pred hhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc----CC-CccHHHHHHHHHHHhcCCC
Q 035749 211 CKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH----GV-AADTWAYRTFIDGLCKNGY 285 (405)
Q Consensus 211 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~ 285 (405)
...|++++|.++++.+... .......+..+...+...|++++|...+.+.... +. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578888998855555432 2235567778888888899999999998887652 11 2234567777788888899
Q ss_pred hHHHHHHHHHHHhc---CC-C--ccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC----Cc-CccHHHHHHHHHHHHcCC
Q 035749 286 IVEALELFRTLRIL---KC-E--LDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG----VL-IADVVTYNIMIHALCADG 354 (405)
Q Consensus 286 ~~~a~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g 354 (405)
+++|...+++.... .. . .....+..++..+...|++++|...+++..+. +. .....++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99998888887654 11 1 12445777888888889999998888876532 11 112334577788888888
Q ss_pred CHHHHHHHHHHHHhC
Q 035749 355 KMDKAHDLFLDMEAK 369 (405)
Q Consensus 355 ~~~~A~~~~~~~~~~ 369 (405)
++++|...+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999988888888876
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-06 Score=69.97 Aligned_cols=173 Identities=10% Similarity=-0.044 Sum_probs=119.5
Q ss_pred HHHhcCchH-HHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCChH
Q 035749 28 GLCRTGHTI-VALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF----------VDKAKELLLQMKDKNINPDVV 96 (405)
Q Consensus 28 ~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~ 96 (405)
...+.|+++ +|+.+++.++..+ |.+..+|+.--.++...+. +++++.+++.+...+ |-+..
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~n-------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~ 109 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG 109 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHH
Confidence 344667765 8999999999986 4556666665555544443 578888888888764 55777
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035749 97 TYNSVIRGFCYAN--DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGK-MEEASQLLELMIQIGVRPNAFVYNTLMD 173 (405)
Q Consensus 97 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (405)
+|+.-...+...+ .+++++..++.+.+..+. |..+|+.-..++...|. ++++++.++.+++.. +.+...|+....
T Consensus 110 aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ 187 (331)
T 3dss_A 110 TWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 8877777777777 478888888888887544 77778777777777777 688888888888875 556777766555
Q ss_pred HHHcc--------------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 035749 174 GFCLT--------------GRVNRAKELFVSMESMGCKHNVFSYSILINGYC 211 (405)
Q Consensus 174 ~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (405)
.+... +.++++++.+....... |.|..+|+-+-..+.
T Consensus 188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 54443 34666777777766654 455666654433333
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-08 Score=78.16 Aligned_cols=158 Identities=11% Similarity=-0.003 Sum_probs=98.6
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCChHHHHHHHH
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK----NI-NPDVVTYNSVIR 103 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~ 103 (405)
+...|++++|.+.++.+... ......++..+...+...|++++|...+++.... +. +....++..+..
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-------PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGM 74 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-------TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34678889998866555432 2356778888888899999999999988887652 11 123456677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCC--ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHH
Q 035749 104 GFCYANDSNEAKRLFIEMMDQ----GVQ--PNVVTFSVIMDELCKNGKMEEASQLLELMIQIG---VRPN--AFVYNTLM 172 (405)
Q Consensus 104 ~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~ 172 (405)
.+...|++++|...+++.... +.. .....+..+...+...|++++|...+++..+.. ..+. ..++..+.
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 788888888888887776543 111 123445666667777777777777777665421 0111 12345556
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 035749 173 DGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~ 193 (405)
.++...|++++|...+++..+
T Consensus 155 ~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 155 DLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHH
Confidence 666666677666666665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.97 E-value=5.1e-08 Score=68.13 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 5667777777777777777777777776653 44566677777777777777777777777766532 245566666666
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGF 175 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (405)
+...|++++|...++++.+.. +.+...+..+..++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 777777777777777766653 33444444444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.8e-08 Score=75.61 Aligned_cols=117 Identities=8% Similarity=0.057 Sum_probs=102.5
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHH-HHhcCCh--H
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDG-LCKEGFV--D 77 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 77 (405)
++|+..++...+.. +.+...|..+...+...|++++|+..|+++++.. +.+...+..+..+ +...|++ +
T Consensus 27 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 27 EAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhcCCcchH
Confidence 46888899888775 5677899999999999999999999999999875 5577888899988 7789998 9
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 035749 78 KAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGV 126 (405)
Q Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (405)
+|...++++.+.. +.+...+..+...+...|++++|...|+++.+..+
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999998874 55788899999999999999999999999998743
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-08 Score=70.46 Aligned_cols=98 Identities=14% Similarity=-0.022 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
...|..+...+.+.|++++|+..|+++++.. |.+...|..+..++.+.|++++|+..+++..+.. |.+...|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 4566777777888888888888888887765 4567778888888888888888888888877764 4467777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
..+..++...|++++|...|++..+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 77888888888888888888777664
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.95 E-value=6e-09 Score=75.08 Aligned_cols=99 Identities=11% Similarity=-0.058 Sum_probs=73.7
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...+..+...+.+.|++++|+..|++++..+ |.+...|..+..++...|++++|+..|++..... |.++..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 88 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRF 88 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHH
Confidence 34456667777778888888888888877765 4567777777788888888888888888777664 456677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
+..+..++...|++++|...|+..++.
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777788888888888888777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-08 Score=73.28 Aligned_cols=101 Identities=7% Similarity=-0.113 Sum_probs=80.6
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
|.+...+..+...+.+.|++++|...|+++...+ |.+...|..+..++...|++++|+..|++.....+. +...+..+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 92 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHH
Confidence 4456677778888888888888888888887764 557788888888888888888888888888876433 56677778
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc
Q 035749 137 MDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
..++...|++++|...|+...+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888888765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=8.5e-08 Score=66.23 Aligned_cols=99 Identities=22% Similarity=0.154 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
...+..+...+...|++++|+..|+++.... |.+...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHH
Confidence 4456667777777777777777777777654 3456677777777777777777777777776653 4456667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQG 125 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (405)
..+..++...|++++|...+++..+..
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 777777777777777777777776653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=4.4e-09 Score=80.68 Aligned_cols=165 Identities=13% Similarity=-0.042 Sum_probs=70.0
Q ss_pred HHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 035749 27 NGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFC 106 (405)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 106 (405)
......|+++++.+.|+..... .......+..+...+...|++++|+..|++..+.. +.+.. +...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~-~~~~----- 77 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEE-------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEE-WDDQ----- 77 (198)
T ss_dssp ----------CCCSGGGCCHHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTT-CCCH-----
T ss_pred hhhhhhhhccccCchhhCCHHH-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccc-cchh-----
Confidence 3344455555555555443221 12334566677777777777777777777776642 11210 0000
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 035749 107 YANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKE 186 (405)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 186 (405)
....-. . ......+..+..++...|++++|+..+++.++.. +.+...+..+..++...|++++|..
T Consensus 78 ---~~~~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 78 ---ILLDKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp ---HHHHHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ---hHHHHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHH
Confidence 000000 0 0012334444444445555555555555544442 3344444455555555555555555
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHH
Q 035749 187 LFVSMESMGCKHNVFSYSILINGYCKNKEIEGAL 220 (405)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (405)
.|++..+.. +.+...+..+..++...++.+++.
T Consensus 144 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 144 NLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555554442 233444444444444444444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-08 Score=67.38 Aligned_cols=101 Identities=12% Similarity=0.023 Sum_probs=79.8
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--C
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP--D 94 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~ 94 (405)
.+...|..+...+...|++++|+..|+++++.. +.+...+..+...+...|++++|...+++..+.. +. +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 75 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYN 75 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTC
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccch
Confidence 345667778888888888888888888888765 4567778888888888888888888888887764 44 5
Q ss_pred hHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCC
Q 035749 95 VVTYNSVIRGFCYA-NDSNEAKRLFIEMMDQG 125 (405)
Q Consensus 95 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 125 (405)
...+..+..++... |++++|.+.++......
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77788888888888 88888888888887664
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.7e-08 Score=67.88 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC---
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NPD--- 94 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--- 94 (405)
.++..+...+.+.|++++|+..|+++++.+ |.+..+|..+..++.+.|++++|++.+++..+... .++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 345666667777777777777777776654 44566666777777777777777777766654310 111
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 95 -VVTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 95 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
..+|..+..++...|++++|++.|++.+.
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12444555555556666666666665554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-07 Score=65.71 Aligned_cols=99 Identities=10% Similarity=-0.054 Sum_probs=69.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++.++..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 34566777777777777777777777777653 446677777777777777777777777777765433 5666666777
Q ss_pred HHHcCCCHHHHHHHHHHHHHc
Q 035749 139 ELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~ 159 (405)
++...|++++|...+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 777777777777777776654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-07 Score=63.37 Aligned_cols=109 Identities=14% Similarity=0.014 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
....+..++..+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+..+. +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 34566677777777777777777777776653 446666777777777777777777777777665322 4556666666
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNT 170 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (405)
++...|++++|...++...+.. +.+...+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 111 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEG 111 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 7777777777777777766653 333334333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-08 Score=78.66 Aligned_cols=97 Identities=12% Similarity=-0.023 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 035749 166 FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGL 245 (405)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (405)
.++..+..++...|++++|+..++.+.... +.+...+..+..++...|++++|+..|++..... +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 678889999999999999999999999875 5678889999999999999999999999998863 33566777788888
Q ss_pred HccccHHHHH-HHHHHHHHc
Q 035749 246 FEIHQVERAF-KLFDEMQRH 264 (405)
Q Consensus 246 ~~~~~~~~a~-~~~~~~~~~ 264 (405)
...++..++. ..+..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 8888877776 555555543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.9e-08 Score=70.80 Aligned_cols=99 Identities=10% Similarity=0.021 Sum_probs=69.3
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
+...|..+...+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++..+.. +.+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHH
Confidence 34566667777777777777777777777654 4456677777777777777777777777776654 445667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
|..+..++...|++++|...|++.++.
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777777777777654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-07 Score=66.03 Aligned_cols=107 Identities=11% Similarity=0.087 Sum_probs=75.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cc----Hhh
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ--PN----VVT 132 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 132 (405)
...++..++..+.+.|++++|++.|++..+.. |.+...|..+..+|...|++++|+..+++.++..+. ++ ..+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 35567788888888888888888888887764 556778888888888888888888888887754211 01 134
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVY 168 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (405)
|..+..++...|++++|++.|++.++. .|+..+.
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 555666666777777777777776654 3444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-07 Score=67.38 Aligned_cols=100 Identities=15% Similarity=-0.046 Sum_probs=63.6
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChH
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVV 96 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (405)
.+...|..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|...+++..+.. +.+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 78 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVK 78 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHH
Confidence 345566666666666777777777776666654 3445666666666666666666666666666553 34556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
.+..+..++...|++++|...|++..+.
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666666666666543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=3e-07 Score=66.43 Aligned_cols=99 Identities=16% Similarity=0.034 Sum_probs=71.8
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD---AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD 94 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 94 (405)
+...+..+...+...|++++|+..|+++++.. +.+ ...+..+..++...|++++|+..+++..+.. +.+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 98 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-------ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGD 98 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccC
Confidence 45567777777888888888888888887754 222 5677777777777888888888877776653 445
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 95 VVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
...+..+..++...|++++|...|++..+.
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 667777777777777777777777777665
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=7e-08 Score=67.08 Aligned_cols=96 Identities=8% Similarity=-0.049 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+..+...+.+.|++++|+..|+++++.. |.+...|..+..++...|++++|+..|++..+.. |.+...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 45667778888888888888888888865 5577888888888888888888888888888764 456778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
+..++...|++++|+..+++.++.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888888764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=3e-07 Score=67.94 Aligned_cols=102 Identities=10% Similarity=-0.024 Sum_probs=81.1
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++.++.... +...+..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 4566778888888888888888888888888764 457788888888888888888888888888876433 57777788
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 137 MDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
..++...|++++|...|++.++..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 888888888888888888887763
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-07 Score=65.89 Aligned_cols=101 Identities=13% Similarity=-0.003 Sum_probs=75.8
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
+.++..+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...+++.++..+. +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 4567778888888888888888888888877664 446777777888888888888888888877776433 56677777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc
Q 035749 137 MDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
..++...|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 77777788888888877777654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.75 E-value=6.2e-08 Score=68.38 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC---
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI--NPD--- 94 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--- 94 (405)
..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+++..+... +++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence 456666666777777777777777776654 34556666677777777777777777766655421 111
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 95 -VVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 95 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
..++..+..++...|++++|.+.|++..+.
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 455556666666666666666666666554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-07 Score=66.14 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=79.5
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cc----Hhh
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQ--PN----VVT 132 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~ 132 (405)
.+..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++....... ++ ..+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 35667778888888888888888888887764 556777888888888888888888888887765221 11 556
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMD 173 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 173 (405)
+..+..++...|++++|...++.+.+.. |+......+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 6667777777778888877777777653 35444444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.7e-07 Score=62.28 Aligned_cols=91 Identities=11% Similarity=-0.044 Sum_probs=36.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHhhc
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKH--NVFSYSILINGYCKN 213 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 213 (405)
+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+..++...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHH
Confidence 3333444444444444444443332 2233333344444444444444444444443332 22 233344444444444
Q ss_pred -CChHHHHHHHHHHHh
Q 035749 214 -KEIEGALSLYSEMLS 228 (405)
Q Consensus 214 -~~~~~a~~~~~~~~~ 228 (405)
|++++|.+.+.+...
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 90 EGKEVEAEIAEARAKL 105 (112)
T ss_dssp SSCSHHHHHHHHHHGG
T ss_pred hCCHHHHHHHHHHHhh
Confidence 444444444444433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-06 Score=63.50 Aligned_cols=111 Identities=14% Similarity=0.052 Sum_probs=73.5
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhh
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD----VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVT 132 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (405)
+.+...+..+...+...|++++|...|++..+.. |+ ...+..+..++...|++++|+..+++..+... .+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHH
Confidence 3456677777777888888888888888777653 44 56666777777777777777777777766532 24556
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTL 171 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (405)
+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHH
Confidence 6666667777777777777777776653 3333444333
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.69 E-value=5.1e-08 Score=85.05 Aligned_cols=124 Identities=12% Similarity=-0.022 Sum_probs=80.9
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc---------------HHHHHHHHHHHHhcCChHHHHHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD---------------AVIYTTIIDGLCKEGFVDKAKEL 82 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~ 82 (405)
....|..+...+.+.|++++|+..|+++++..+ .+ ..+|..+..++.+.|++++|+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p-------~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE-------MEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-------TCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-------ccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 345788899999999999999999999998652 22 45666666666666666666666
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHH
Q 035749 83 LLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEAS 150 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 150 (405)
+++..+.. +.+...|..+..++...|++++|+..|++.++..+. +...+..+..++...++.+++.
T Consensus 340 ~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 340 CDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 66666553 345666666666666666666666666666654322 3445555555555555555444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.68 E-value=8.6e-07 Score=62.33 Aligned_cols=98 Identities=8% Similarity=-0.052 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD---VVTY 98 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 98 (405)
+..+...+...|++++|+..|+++++..+. .+.....+..+..++...|++++|...|+++.+.. |.+ ...+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 79 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN----GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHH
Confidence 455667778888888888888888876521 01112577778888888888888888888887653 333 5667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
..+..++...|++++|...|+.+.+.
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888888888887765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-06 Score=73.70 Aligned_cols=197 Identities=8% Similarity=-0.102 Sum_probs=107.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCCh----------------hhHHHHHHHHhhcCChHHHHHHHHHHHhC-CCCCc
Q 035749 172 MDGFCLTGRVNRAKELFVSMESMGCKHNV----------------FSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPT 234 (405)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 234 (405)
.+.+...|++++|++.|..+.+....... .++..++..|...|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45566778888888888887765322110 12556667777777777777777665542 11111
Q ss_pred hh----hHHHHHHHHHccccHHHHHHHHHHHHHc----CCC-ccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC-----
Q 035749 235 VV----TYNTLFIGLFEIHQVERAFKLFDEMQRH----GVA-ADTWAYRTFIDGLCKNGYIVEALELFRTLRILK----- 300 (405)
Q Consensus 235 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 300 (405)
.. +.+.+...+...|+++.+..++...... +.. .-..++..+...+...|++++|..+++.+...-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1222233334456677777666665431 111 123455566666666777777777666654321
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC----CcCc--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 301 CELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG----VLIA--DVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
.+....++..++..|...|++++|..++++.... ..++ -...+..++..+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1122345666666677777777777666654321 1111 123445555556666677777666666654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.1e-08 Score=85.60 Aligned_cols=158 Identities=13% Similarity=-0.055 Sum_probs=81.3
Q ss_pred CchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHH
Q 035749 33 GHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSN 112 (405)
Q Consensus 33 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 112 (405)
+++++|+..|+...+.. +.....+..+...+.+.|++++|+..|++..+.. +.+.. + . .+
T Consensus 248 ~~~~~A~~~~~~~~~~~-------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~-~----------~-~~ 307 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYG-L----------S-EK 307 (457)
T ss_dssp EEEECCCCGGGSCHHHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCS-C----------C-HH
T ss_pred hhcccCcchhhcCHHHH-------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-ccccc-C----------C-hH
Confidence 34445555555444321 3345677888888888888888888888877642 11210 0 0 00
Q ss_pred HHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 035749 113 EAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 192 (405)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (405)
... ... ......|..+..++.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++.
T Consensus 308 ~~~----~~~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 308 ESK----ASE----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378 (457)
T ss_dssp HHH----HHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH----HHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 000 000 0013344455555555555555555555555543 3345555555555555666666666665555
Q ss_pred hcCCCCChhhHHHHHHHHhhcCChHHHH
Q 035749 193 SMGCKHNVFSYSILINGYCKNKEIEGAL 220 (405)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (405)
+.. +.+...+..+..++.+.++.+++.
T Consensus 379 ~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 379 EVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 543 334445555555555555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.2e-06 Score=72.66 Aligned_cols=198 Identities=11% Similarity=-0.031 Sum_probs=142.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-Cc
Q 035749 66 IIDGLCKEGFVDKAKELLLQMKDKNINPD----------------VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGV-QP 128 (405)
Q Consensus 66 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~ 128 (405)
-...+.+.|++++|++.|..+.+...... ..++..++..|...|++++|.+.+..+...-. .+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 45667889999999999999987632111 12477889999999999999999988765311 11
Q ss_pred cH----hhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC---
Q 035749 129 NV----VTFSVIMDELCKNGKMEEASQLLELMIQI----GVR-PNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGC--- 196 (405)
Q Consensus 129 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 196 (405)
+. ...+.+...+...|+++++..+++..... +.. .-..++..+...+...|++++|..+++.+...-.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 12333444455678999999999887653 222 2345778899999999999999999998764311
Q ss_pred --CCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC----CCCCc--hhhHHHHHHHHHccccHHHHHHHHHHHHH
Q 035749 197 --KHNVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIKPT--VVTYNTLFIGLFEIHQVERAFKLFDEMQR 263 (405)
Q Consensus 197 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 263 (405)
+....++..++..|...|++++|..++++.... +.++. ...+..+...+...+++++|...+.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 123457888899999999999999999987653 11111 23456666777889999999988887754
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-07 Score=64.81 Aligned_cols=95 Identities=8% Similarity=-0.098 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHc
Q 035749 273 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCA 352 (405)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 352 (405)
+..+...+.+.|++++|...++++.... |.+...+..++.++...|++++|+..|+++.+... .+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4445566667777777777777777664 45666777777777777777777777777665422 245666677777777
Q ss_pred CCCHHHHHHHHHHHHhC
Q 035749 353 DGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 353 ~g~~~~A~~~~~~~~~~ 369 (405)
.|++++|+..++++++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.61 E-value=2.9e-08 Score=86.93 Aligned_cols=125 Identities=12% Similarity=0.020 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+..+...+.+.|++++|++.|+++++.. +.+..++..+..++.+.|++++|++.+++..+.. +.+...+..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~ 79 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYR 79 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 34445566778999999999999999875 5568899999999999999999999999999874 557888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH--HHcCCCHHHHHHHHH
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE--LCKNGKMEEASQLLE 154 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 154 (405)
+..++...|++++|++.|++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999876432 44455555555 777889999998887
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.61 E-value=7.5e-07 Score=75.15 Aligned_cols=128 Identities=7% Similarity=-0.033 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCc---------ccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFG---------VVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKN 90 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 90 (405)
..|..+...+.+.|++++|+..|+++++..+... ...+.+..+|..+..++.+.|++++|+..+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3577888999999999999999999987210000 0012334556666666666666666666666665543
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHH
Q 035749 91 INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEA 149 (405)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 149 (405)
+.+...+..+..++...|++++|+..|++..+..+. +...+..+..++...++.+++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 334555555666666666666666666665554222 344444444444444444333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-06 Score=64.55 Aligned_cols=105 Identities=11% Similarity=0.084 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCC------ccc-----ccccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEF------GVV-----CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMK 87 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 87 (405)
...+......+.+.|++++|+..|+++++..+.. ... .+.+..+|..+..++.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4567888999999999999999999998751000 000 02234577777777888888888888888777
Q ss_pred hCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 88 DKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
+.. |.+...|..+..++...|++++|...|++.+..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 664 556777777777788888888888888777765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-06 Score=64.49 Aligned_cols=102 Identities=16% Similarity=0.100 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI-NPD---- 94 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~---- 94 (405)
.++..+...+...|++++|+..++++++.....+. ......++..+...+...|++++|...+++..+... ..+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 35666667777777777777777776654210000 001123566666666677777777776666543210 001
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 035749 95 VVTYNSVIRGFCYANDSNEAKRLFIEMM 122 (405)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 122 (405)
..++..+...+...|++++|...+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2344455555556666666665555544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-07 Score=67.73 Aligned_cols=130 Identities=12% Similarity=0.001 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhcCC---Cc--cHHHHHHHHHHHHhcCCHHHHHHHHhhccCC----Cc-CccHHH
Q 035749 273 YRTFIDGLCKNGYIVEALELFRTLRILKC---EL--DIRSYSCLIDGLCKSGRLKIAWELFHSLPRG----VL-IADVVT 342 (405)
Q Consensus 273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 342 (405)
+..+...+...|++++|...+++...... .+ ...++..++..+...|++++|...+++..+. +. ......
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33444444445555555555544433210 00 0124455555555666666666655554321 00 011334
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 343 YNIMIHALCADGKMDKAHDLFLDMEAK----GVA-PDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
+..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 555666666666666666666665532 111 012345555666666777777777666654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.6e-06 Score=58.48 Aligned_cols=94 Identities=16% Similarity=0.102 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc---HhhHHHHH
Q 035749 64 TTIIDGLCKEGFVDKAKELLLQMKDKNINPDV---VTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPN---VVTFSVIM 137 (405)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 137 (405)
..+...+...|++++|...|+++.+.. |.+. ..+..+..++...|++++|...|+++.+..+. + ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 344555666677777777776666542 2222 35556666666666666666666666654322 2 34455556
Q ss_pred HHHHcCCCHHHHHHHHHHHHHc
Q 035749 138 DELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.++...|++++|...++.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666655
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.55 E-value=4e-07 Score=62.83 Aligned_cols=89 Identities=13% Similarity=0.055 Sum_probs=68.9
Q ss_pred hcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC
Q 035749 31 RTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAND 110 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 110 (405)
..|++++|+..|+++++.+.. .|.+..++..+..++...|++++|+..|++..+.. |.+...+..+..++...|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ----GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGR 76 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHcCCC----CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCC
Confidence 467888999999999886310 14456788889999999999999999999988774 5568888888999999999
Q ss_pred HHHHHHHHHHHHHC
Q 035749 111 SNEAKRLFIEMMDQ 124 (405)
Q Consensus 111 ~~~a~~~~~~~~~~ 124 (405)
+++|+..+++.+..
T Consensus 77 ~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 77 YEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.8e-07 Score=80.73 Aligned_cols=118 Identities=10% Similarity=-0.077 Sum_probs=64.5
Q ss_pred HHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHH
Q 035749 279 GLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDK 358 (405)
Q Consensus 279 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 358 (405)
.+.+.|++++|.+.++++.+.. +.+..++..++.+|...|++++|...++++.+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3445566666666666665553 3445566666666666666666666666665542 2245556666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCchhHHHHHHH
Q 035749 359 AHDLFLDMEAKGVAPDCVAFNTLMLG--CIRNNETSKVVELLH 399 (405)
Q Consensus 359 A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 399 (405)
|++.++++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666542 1123334444433 556666666666655
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.6e-06 Score=75.12 Aligned_cols=171 Identities=8% Similarity=-0.057 Sum_probs=135.8
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCc----------hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGH----------TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGL 70 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 70 (405)
++|++.++.+.... +-+..+|+..-.++...|+ ++++++.++.+++.+ |.+..+|..-.-++
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-------pK~y~aW~hR~w~l 117 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------PKSYGTWHHRCWLL 117 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHH
Confidence 47888999998875 4566788888888877777 899999999999986 56788888888888
Q ss_pred HhcC--ChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC----
Q 035749 71 CKEG--FVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN-DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN---- 143 (405)
Q Consensus 71 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 143 (405)
.+.+ +++++++.++++.+.. +.+..+|+.-...+...| .++++++.++++++..+. +..+|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence 8888 6799999999999885 568888988888888888 899999999999887655 778888777666552
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 035749 144 ----------GKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVN 182 (405)
Q Consensus 144 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 182 (405)
+.++++++.+++++... +.+...|..+...+.+.++.+
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45678888888887765 556777777776666666533
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=9.6e-06 Score=72.41 Aligned_cols=179 Identities=9% Similarity=-0.033 Sum_probs=144.1
Q ss_pred HHhcCc-hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCChHH
Q 035749 29 LCRTGH-TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGF----------VDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 29 ~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
..+.|+ .++|++.++++++.+ |.+..+|+.-..++...|+ ++++++.++.+.+.+ |-+..+
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~n-------P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~a 109 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHH
Confidence 334455 467899999999986 5567788887777777777 899999999999875 557888
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 035749 98 YNSVIRGFCYAN--DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNG-KMEEASQLLELMIQIGVRPNAFVYNTLMDG 174 (405)
Q Consensus 98 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (405)
|..-...+.+.+ +++++++.++++.+..+. +..+|+....++.+.| .++++++.++++++.. +-+...|+.....
T Consensus 110 W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~l 187 (567)
T 1dce_A 110 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHH
Confidence 988888888889 779999999999998655 8888988888888888 8999999999998876 5677888777666
Q ss_pred HHcc--------------CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHH
Q 035749 175 FCLT--------------GRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEG 218 (405)
Q Consensus 175 ~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 218 (405)
+... +.++++++.+..+.... |.+..+|..+...+.+.++.++
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 5553 55789999999988775 6677888888777777766443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-06 Score=72.81 Aligned_cols=138 Identities=10% Similarity=-0.063 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDE 139 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (405)
...+..+...+.+.|++++|+..|++..+.. +... ..... +..... .+.+...|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~-------~~~~~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAED-------ADGAKL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCH-------HHHGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccCh-------HHHHHH-HHHHHHHHHHHHHH
Confidence 3456777778888888888888888776520 0000 00000 000001 01133444555555
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGA 219 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (405)
+.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555543 3344555555555555555555555555555543 23444444444444444444444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=64.31 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=63.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CC----------CCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 035749 59 DAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-------NI----------NPDVVTYNSVIRGFCYANDSNEAKRLFIEM 121 (405)
Q Consensus 59 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 121 (405)
....+......+.+.|++++|+..|++.... .. +.+...|..+..++.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4667888899999999999999999988764 00 112345555555566666666666666655
Q ss_pred HHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 122 MDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
++..+. +...|..+..++...|++++|...|++.++.
T Consensus 90 l~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 554322 4555555555566666666666666555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.8e-07 Score=62.45 Aligned_cols=83 Identities=17% Similarity=0.108 Sum_probs=72.6
Q ss_pred ChHhHHHHHHhhcC--CCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHH
Q 035749 1 MEAAALFTKLKAFG--CEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDK 78 (405)
Q Consensus 1 ~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (405)
++|+..|+...+.+ -+.+..++..+..++...|++++|+..|+++++.. |.++.++..+..++...|++++
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHcCCHHH
Confidence 57899999999874 23456789999999999999999999999999986 5668899999999999999999
Q ss_pred HHHHHHHHHhCC
Q 035749 79 AKELLLQMKDKN 90 (405)
Q Consensus 79 a~~~~~~~~~~~ 90 (405)
|+..+++.....
T Consensus 80 A~~~~~~al~~~ 91 (117)
T 3k9i_A 80 GVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999988763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.4e-06 Score=61.11 Aligned_cols=104 Identities=12% Similarity=-0.056 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccc-----ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVV-----CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK---- 89 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 89 (405)
...+......+...|++++|+..|+++++..+..... .+.+...|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4457778888999999999999999999876421000 0012337777777777777777777777777664
Q ss_pred ---CCCCChHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 90 ---NINPDVVTY----NSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 90 ---~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
+ |.+...| .....++...|++++|+..|++.++
T Consensus 91 ~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3 2344555 6666666666666666666666654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.47 E-value=8.3e-07 Score=74.06 Aligned_cols=149 Identities=11% Similarity=-0.026 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
...+..+...+.+.|++++|+..|+++++.. |+... +...++++++...+ . ..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--------p~~~~-------~~~~~~~~~~~~~l---~-------~~~~ 233 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--------GDDFM-------FQLYGKYQDMALAV---K-------NPCH 233 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--------CHHHH-------HTCCHHHHHHHHHH---H-------THHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--------ccchh-------hhhcccHHHHHHHH---H-------HHHH
Confidence 3457788888999999999999999998754 33221 11122222222211 1 1355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHc
Q 035749 99 NSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDG-FCL 177 (405)
Q Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 177 (405)
..+..++.+.|++++|+..+++.++... .+...+..+..+|...|++++|...|+++.+.. +.+...+..+..+ ...
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
Confidence 6666666666666666666666665532 255566666666666677777776666665542 2233444444443 223
Q ss_pred cCCHHHHHHHHHHHHhc
Q 035749 178 TGRVNRAKELFVSMESM 194 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~ 194 (405)
.+..+++...|..+...
T Consensus 312 ~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 34455666666666544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-06 Score=74.35 Aligned_cols=131 Identities=9% Similarity=-0.059 Sum_probs=88.5
Q ss_pred HHHhcCchHHHHHHHHHHHcCCCC-CcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCChHHHH
Q 035749 28 GLCRTGHTIVALNLFEEMINGNGE-FGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-----N--INPDVVTYN 99 (405)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 99 (405)
.+...|++++|+.+++++++.... ++...+....+++.|+..|...|++++|..++++..+. | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999998765322 22223345678999999999999999999999887542 2 122345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCC--ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQ-----GVQ--PNVVTFSVIMDELCKNGKMEEASQLLELMIQ 158 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (405)
.|...|...|++++|+.++++.+.. |.. ....+...+..++...+.+++|+..+..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888776541 221 1223344455555566666666666666654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=8.8e-06 Score=57.83 Aligned_cols=112 Identities=11% Similarity=-0.079 Sum_probs=88.9
Q ss_pred cccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----cCCHHH
Q 035749 248 IHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCK----SGRLKI 323 (405)
Q Consensus 248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 323 (405)
.+++++|...|++..+.+ .++.. +...|...+..++|.+.|++..+.+ ++..+..+...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 357888999999888877 33333 6777777788888999999888764 56777888888887 788999
Q ss_pred HHHHHhhccCCCcCccHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCC
Q 035749 324 AWELFHSLPRGVLIADVVTYNIMIHALCA----DGKMDKAHDLFLDMEAKG 370 (405)
Q Consensus 324 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 370 (405)
|...|++..+.+ ++..+..|...|.. .+++++|...|++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999998887753 56777788888887 788999999999888875
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.7e-06 Score=70.99 Aligned_cols=149 Identities=10% Similarity=-0.024 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Q 035749 200 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDG 279 (405)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 279 (405)
...+..+...+.+.|++++|+..|++.+.. .|+.. .+...++..++...+. ...+..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445566667777777777777777777664 23322 1223344444332221 1366777888
Q ss_pred HhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHH-HHcCCCHHH
Q 035749 280 LCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHA-LCADGKMDK 358 (405)
Q Consensus 280 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 358 (405)
+.+.|++++|+..++++.... +.+...+..++.+|...|++++|...|+++.+... .+...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 888889999988888888775 55778888888888888999999888888876422 244455555544 234556677
Q ss_pred HHHHHHHHHhC
Q 035749 359 AHDLFLDMEAK 369 (405)
Q Consensus 359 A~~~~~~~~~~ 369 (405)
+...|++|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77888887764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.6e-05 Score=55.36 Aligned_cols=110 Identities=9% Similarity=-0.044 Sum_probs=58.0
Q ss_pred chHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh----cC
Q 035749 34 HTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY----AN 109 (405)
Q Consensus 34 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 109 (405)
++++|+.+|+++.+.+ .+... +...|...+.+++|++.|++..+.| ++..+..|...|.. .+
T Consensus 10 d~~~A~~~~~~aa~~g-------~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-------EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp HHHHHHHHHHHHHHTT-------CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CHHHHHHHHHHHHcCC-------CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCc
Confidence 4556666666665544 12222 4444445555555666666655543 45555555555555 45
Q ss_pred CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcC
Q 035749 110 DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK----NGKMEEASQLLELMIQIG 160 (405)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 160 (405)
++++|..+|++..+.| +...+..+...|.. .+++++|..++++..+.|
T Consensus 76 d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 76 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5566666665555543 33444445555554 455555555555555544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-05 Score=57.39 Aligned_cols=98 Identities=12% Similarity=0.002 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-----Ch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNIN-P-----DV-----VTYNSVIRGFCYANDSNEAKRLFIEMMDQ---- 124 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 124 (405)
...+......+.+.|++++|+..|++.++.... | +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456677777888889999999999888775311 0 11 15555555555555655555555555543
Q ss_pred ---CCCccHhhH----HHHHHHHHcCCCHHHHHHHHHHHHH
Q 035749 125 ---GVQPNVVTF----SVIMDELCKNGKMEEASQLLELMIQ 158 (405)
Q Consensus 125 ---~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (405)
.+. +...| .....++...|++++|+..|++.++
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 211 23333 4444444444444444444444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.7e-06 Score=56.35 Aligned_cols=81 Identities=14% Similarity=0.029 Sum_probs=67.9
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAK 80 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 80 (405)
++|+..|+...+.. +.+...+..+...+...|++++|+..|+++++.. +.+...|..+..++...|++++|.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-------PTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 46788888888765 4567788889999999999999999999998875 456778888999999999999999
Q ss_pred HHHHHHHhC
Q 035749 81 ELLLQMKDK 89 (405)
Q Consensus 81 ~~~~~~~~~ 89 (405)
..|++..+.
T Consensus 74 ~~~~~al~~ 82 (115)
T 2kat_A 74 QAWESGLAA 82 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.5e-06 Score=57.23 Aligned_cols=93 Identities=13% Similarity=0.021 Sum_probs=67.5
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD--- 94 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 94 (405)
+...|..+...+...|++++|+..|+++++.. |.+...+..+..++...|++++|+..+++..+.. +.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHH
Confidence 45677788888888889999999998888765 4567788888888888888888888888888763 223
Q ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 95 ---VVTYNSVIRGFCYANDSNEAKRLF 118 (405)
Q Consensus 95 ---~~~~~~l~~~~~~~~~~~~a~~~~ 118 (405)
...+..+..++...|+.+.|...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 445555555555555555544433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.3e-07 Score=60.44 Aligned_cols=94 Identities=15% Similarity=0.019 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-------HH
Q 035749 304 DIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD-------CV 376 (405)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~ 376 (405)
+...+..++..+...|++++|...|++..+.. +.+...+..+..++...|++++|+..++++++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34455666666666677777776666665532 224566666666777777777777777776664 232 44
Q ss_pred HHHHHHHHHHccCchhHHHHHHHH
Q 035749 377 AFNTLMLGCIRNNETSKVVELLHR 400 (405)
Q Consensus 377 ~~~~l~~~~~~~g~~~~a~~~~~~ 400 (405)
.+..+..++...|++++|...+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 455555666666666655554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.28 E-value=7.9e-06 Score=71.18 Aligned_cols=88 Identities=13% Similarity=0.007 Sum_probs=43.4
Q ss_pred HHhcCChHHHHHHHHHHHhC-----C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCccHhhHHH
Q 035749 70 LCKEGFVDKAKELLLQMKDK-----N--INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ-----G--VQPNVVTFSV 135 (405)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 135 (405)
+..+|++++|+.++++..+. | .+....+++.|...|...|++++|+.++++.+.. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33456666666666555432 1 0112344555556666666666666555554431 1 1112334555
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH
Q 035749 136 IMDELCKNGKMEEASQLLELMI 157 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~ 157 (405)
|...|...|++++|+.++++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.28 E-value=9.3e-06 Score=52.74 Aligned_cols=80 Identities=13% Similarity=0.132 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
...+..+...+...|++++|+..|+++++.. +.+..++..+..++...|++++|...+++..+.. |.+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHH
Confidence 3455666666666667777777666666553 3445566666666666666666666666666543 3345555
Q ss_pred HHHHHHHH
Q 035749 99 NSVIRGFC 106 (405)
Q Consensus 99 ~~l~~~~~ 106 (405)
..+..++.
T Consensus 81 ~~l~~~~~ 88 (91)
T 1na3_A 81 QNLGNAKQ 88 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.6e-05 Score=54.46 Aligned_cols=80 Identities=13% Similarity=0.077 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 035749 37 VALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKR 116 (405)
Q Consensus 37 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 116 (405)
.|+..|+++++.. |.+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|..
T Consensus 3 ~a~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQG-------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4667777777664 4566777777777778888888888887777654 4456677777777777777777777
Q ss_pred HHHHHHHC
Q 035749 117 LFIEMMDQ 124 (405)
Q Consensus 117 ~~~~~~~~ 124 (405)
.|++..+.
T Consensus 75 ~~~~al~~ 82 (115)
T 2kat_A 75 AWESGLAA 82 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77776653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=6e-06 Score=58.95 Aligned_cols=87 Identities=13% Similarity=-0.070 Sum_probs=69.3
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHhCCCCCChHHHH
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFV----------DKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
.+.+.+++|++.++.+++.+ |.++..|..+..++...+++ ++|+..|++.++.+ |.+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~ 84 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHH
Confidence 45678899999999999986 67889999999999988775 48888888888775 45677888
Q ss_pred HHHHHHHhcC-----------CHHHHHHHHHHHHHC
Q 035749 100 SVIRGFCYAN-----------DSNEAKRLFIEMMDQ 124 (405)
Q Consensus 100 ~l~~~~~~~~-----------~~~~a~~~~~~~~~~ 124 (405)
.+..+|...| ++++|++.|++.++.
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 8888887764 677777777777664
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.11 E-value=5.4e-05 Score=49.00 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3334444444444444444444444432 223334444444444444444444444444443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.2e-05 Score=57.36 Aligned_cols=93 Identities=14% Similarity=0.028 Sum_probs=76.9
Q ss_pred ChHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCch----------HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHH
Q 035749 1 MEAAALFTKLKAFGCEPNVITYSTLINGLCRTGHT----------IVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGL 70 (405)
Q Consensus 1 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 70 (405)
++|++.++...+.. |.+...|..+..++...+++ ++|+..|+++++.+ |....+|..+..+|
T Consensus 19 eeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 19 EQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-------cCcHHHHHHHHHHH
Confidence 47888999988875 66888999999999988775 59999999999986 56788999999999
Q ss_pred HhcC-----------ChHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 035749 71 CKEG-----------FVDKAKELLLQMKDKNINPDVVTYNSVIR 103 (405)
Q Consensus 71 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 103 (405)
...| ++++|++.|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 9875 899999999999986 566665554444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.01 E-value=3.4e-05 Score=51.19 Aligned_cols=67 Identities=18% Similarity=0.111 Sum_probs=56.4
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 16 EPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
+.++..+..+...+...|++++|+..|+++++.+ |.+..+|..+..++...|++++|.+.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4467788889999999999999999999998876 456778899999999999999999999887653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00024 Score=58.43 Aligned_cols=136 Identities=7% Similarity=-0.030 Sum_probs=73.5
Q ss_pred CCCChhHHHHHHHHHH--hc---CchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh---cC-Ch-HHHH---H
Q 035749 15 CEPNVITYSTLINGLC--RT---GHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK---EG-FV-DKAK---E 81 (405)
Q Consensus 15 ~~~~~~~~~~l~~~~~--~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-~~-~~a~---~ 81 (405)
.+.+..+|...+++.. .. .+..+|+.+|+++++.+ |.....|..+..++.. .+ .. .... .
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-------P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-------PEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 4667788888876654 33 33578999999999987 3445556555544431 01 00 0110 1
Q ss_pred HHHHHHh-CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 82 LLLQMKD-KNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 82 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.++.... ...+.++.+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|...+++....
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1111100 0113455555555555555566666666666665553 44445555555555666666666666665554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.91 E-value=9.3e-05 Score=49.03 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=47.1
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
|.++..+..+..++...|++++|+..|++..+.. |.+...|..+..++...|++++|...|++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4456677777777777777777777777777664 44566777777777777777777777777654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00029 Score=60.48 Aligned_cols=100 Identities=13% Similarity=-0.006 Sum_probs=74.4
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCC-CcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCCh
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGE-FGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-----N--INPDV 95 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~ 95 (405)
..+..+...|++++|+.+++++++.... ++...+....+++.++.+|...|++++|+.++++.... | .|...
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3455677889999999999999875422 22223344678999999999999999999999987642 1 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
.+++.|...|...|++++|+.++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5677888888888888888888887764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00013 Score=62.50 Aligned_cols=93 Identities=5% Similarity=-0.130 Sum_probs=66.8
Q ss_pred hcCchHHHHHHHHHHHcCCCC-CcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCCChHHHHHHH
Q 035749 31 RTGHTIVALNLFEEMINGNGE-FGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK-----N--INPDVVTYNSVI 102 (405)
Q Consensus 31 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~ 102 (405)
..|++++|+.+++++++.... ++...+....+++.|..+|...|++++|+.++++..+. | .+....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 467889999999988764321 22223334678899999999999999999999887542 2 122345677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 035749 103 RGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~ 123 (405)
..|...|++++|+.++++.++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888877654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0019 Score=53.26 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=57.2
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 035749 302 ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFN 379 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 379 (405)
+.++.++..+...+...|++++|...++++...+ |+...|..+...+...|++++|.+.++++... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5677777777777777788888888888887753 67777777788888888888888888888874 66666654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0075 Score=47.68 Aligned_cols=85 Identities=16% Similarity=0.229 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhc-CCh
Q 035749 146 MEEASQLLELMIQIGVRPN---AFVYNTLMDGFCLT-----GRVNRAKELFVSMESMGCKHNVFSYSILINGYCKN-KEI 216 (405)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 216 (405)
...|...+++.++. .|+ ...|..+...|... |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666677777766 344 45677777777774 77888888888877774222366666677777764 777
Q ss_pred HHHHHHHHHHHhCCCC
Q 035749 217 EGALSLYSEMLSKGIK 232 (405)
Q Consensus 217 ~~a~~~~~~~~~~~~~ 232 (405)
+.+.+.+++.+.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888887776444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0012 Score=42.79 Aligned_cols=68 Identities=12% Similarity=0.010 Sum_probs=48.7
Q ss_pred CCChhHHHHHHHHHHhcCc---hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 035749 16 EPNVITYSTLINGLCRTGH---TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKN 90 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 90 (405)
+.++..+..+..++...++ .++|..+++++++.+ |.++.....+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566677777777654444 677888888877765 5567777777777778888888888888877663
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.001 Score=43.63 Aligned_cols=67 Identities=19% Similarity=0.106 Sum_probs=53.2
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHH
Q 035749 24 TLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAV-IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 24 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
.....+...|++++|+..|+++++.. +.+.. .+..+..++...|++++|...|++..+.. +.+...+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 35667788899999999999998875 45667 88899999999999999999999988764 3334443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.001 Score=44.25 Aligned_cols=80 Identities=10% Similarity=-0.021 Sum_probs=61.1
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChH
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVV 96 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (405)
.++..+..+...+.+.|++..|+.+|+.+++..........+...++..+..++.+.|+++.|+..++++.+.. |.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P~~~~ 81 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQR 81 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHH
Confidence 46667788999999999999999999998875311100013567889999999999999999999999998763 33444
Q ss_pred H
Q 035749 97 T 97 (405)
Q Consensus 97 ~ 97 (405)
+
T Consensus 82 ~ 82 (104)
T 2v5f_A 82 A 82 (104)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0013 Score=46.39 Aligned_cols=79 Identities=9% Similarity=-0.069 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhcC---CHHHHHHHHhhccCCCcCc--cHHHHHHHHHHHHcCCCHHHHHHH
Q 035749 288 EALELFRTLRILKCELDIRSYSCLIDGLCKSG---RLKIAWELFHSLPRGVLIA--DVVTYNIMIHALCADGKMDKAHDL 362 (405)
Q Consensus 288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 362 (405)
.+.+-|.+....+ +++..+...+..++++.+ +.++++.+|+.+.+.. .| +...+-.+..++.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3444444444433 345555555555555555 3445555555555432 12 234444455555666666666666
Q ss_pred HHHHHh
Q 035749 363 FLDMEA 368 (405)
Q Consensus 363 ~~~~~~ 368 (405)
++.+++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666665
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.001 Score=43.64 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=28.3
Q ss_pred HHHHccccHHHHHHHHHHHHHcCCCccHH-HHHHHHHHHhcCCChHHHHHHHHHHHhc
Q 035749 243 IGLFEIHQVERAFKLFDEMQRHGVAADTW-AYRTFIDGLCKNGYIVEALELFRTLRIL 299 (405)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 299 (405)
..+...|++++|...++++.+.. +.+.. .+..+..++...|++++|...|+++...
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34444555555555555555442 23334 4455555555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0013 Score=56.38 Aligned_cols=62 Identities=13% Similarity=-0.067 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 035749 131 VTFSVIMDELCKNGKMEEASQLLELMIQI-----G--VRPNAFVYNTLMDGFCLTGRVNRAKELFVSME 192 (405)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (405)
.+++.++.+|...|++++|+.++++++.. | .+....+++.+...|...|++++|+.+++++.
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34445555555555555555555544432 1 11122344555555555555555555555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0006 Score=58.43 Aligned_cols=84 Identities=8% Similarity=-0.051 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHhc-----C--CCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC-----C-CCCc-hhhHHHHHHH
Q 035749 179 GRVNRAKELFVSMESM-----G--CKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK-----G-IKPT-VVTYNTLFIG 244 (405)
Q Consensus 179 ~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~ 244 (405)
|++++|+.++++..+. | .+....+++.+..+|...|++++|+.++++.+.. | ..|+ ..+++.+...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554331 1 1112345556666666666666666666655431 1 1222 2345666666
Q ss_pred HHccccHHHHHHHHHHHH
Q 035749 245 LFEIHQVERAFKLFDEMQ 262 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~ 262 (405)
|...|++++|..+++++.
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 666666666666666554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0027 Score=41.05 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=47.6
Q ss_pred cccHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 035749 57 KPDAVIYTTIIDGLCKEGF---VDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQG 125 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 125 (405)
+.++..+..+..++...++ .++|..++++..+.. |.++.....+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566777777777665444 577777777777664 5566777777777777777777777777777653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0079 Score=41.89 Aligned_cols=105 Identities=12% Similarity=0.081 Sum_probs=70.2
Q ss_pred CCChhHHHHHHHHHHhcCch------HHHHHHHHHHHcCCCCCcccccccH-HHHHHHHHHH------HhcCChHHHHHH
Q 035749 16 EPNVITYSTLINGLCRTGHT------IVALNLFEEMINGNGEFGVVCKPDA-VIYTTIIDGL------CKEGFVDKAKEL 82 (405)
Q Consensus 16 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~------~~~~~~~~a~~~ 82 (405)
+.|..+|-..+..+-+.|++ ++.+++|+++...- ||+. ..|...|..+ ...++.++|.++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-------Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~v 82 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-------PPDKYGQNESFARIQVRFAELKAIQEPDDARDY 82 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-------CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-------CccccccHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45778899999998888999 89999999998864 4431 1222222211 233677777777
Q ss_pred HHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 035749 83 LLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQP 128 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 128 (405)
|+.+++.+-.- ...|....+.-.+.|++.+|.+++...+..+..|
T Consensus 83 y~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 83 FQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 77776543222 5566666666667777777777777777766554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.007 Score=42.74 Aligned_cols=82 Identities=12% Similarity=0.031 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-CCccHhhHHHHHHHHHcCCCHHHHHHH
Q 035749 77 DKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN---DSNEAKRLFIEMMDQG-VQPNVVTFSVIMDELCKNGKMEEASQL 152 (405)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (405)
..+.+-|.+..+.+ +++..+...+..++++.+ ++++++.+++...+.+ +.-+...+..+.-++.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34455555555554 467777777888888777 5568888888877764 111355556667777888888888888
Q ss_pred HHHHHHc
Q 035749 153 LELMIQI 159 (405)
Q Consensus 153 ~~~~~~~ 159 (405)
++.+++.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8888776
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.011 Score=39.18 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=11.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 035749 167 VYNTLMDGFCLTGRVNRAKELFVSMES 193 (405)
Q Consensus 167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 193 (405)
++..+..++.+.|+++.|...++++.+
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444444444444444444444433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.059 Score=50.79 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=24.0
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHH
Q 035749 176 CLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEM 226 (405)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 226 (405)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3455555555553321 24455555666666666666665555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.062 Score=39.04 Aligned_cols=129 Identities=11% Similarity=0.110 Sum_probs=84.4
Q ss_pred HHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHH
Q 035749 243 IGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLK 322 (405)
Q Consensus 243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 322 (405)
....+.|+++.|.++.+.+ .+...|..+.......|+++-|...|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 4456788888888886654 3677888888888888998888888887653 334445566778877
Q ss_pred HHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 323 IAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
...++-+.....| -++....++...|++++++++|.+.-. .|.. +......|-.+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 7766655544332 245556667778999999988855432 2211 11122346667777776654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.013 Score=39.74 Aligned_cols=85 Identities=7% Similarity=-0.114 Sum_probs=56.4
Q ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHH---HHHHHhhccCCCcC-ccHHHHHHHHHHHHcCCCHHHH
Q 035749 284 GYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKI---AWELFHSLPRGVLI-ADVVTYNIMIHALCADGKMDKA 359 (405)
Q Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 359 (405)
.....+.+-|......+ .++..+-..+++++.+..+... ++.+++.+.+.+.+ -.....-.|..++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555555545 4677777777778877776655 77777777765311 1344455667778888888888
Q ss_pred HHHHHHHHhC
Q 035749 360 HDLFLDMEAK 369 (405)
Q Consensus 360 ~~~~~~~~~~ 369 (405)
.+.++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888874
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.029 Score=52.87 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=89.3
Q ss_pred HHccCCHHHHHH-HHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHH
Q 035749 175 FCLTGRVNRAKE-LFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVER 253 (405)
Q Consensus 175 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 253 (405)
....+++++|.+ ++..+ ++......++..+.+.|.++.|.++.+. |. .-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHH
Confidence 345667777655 43211 1022236666667777777777655521 11 11233456777777
Q ss_pred HHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 035749 254 AFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPR 333 (405)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (405)
|.++.+. ..+...+..+...+.+.++++.|.+.|.++.. +..+...+...|+.+...++-+....
T Consensus 671 A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 7776432 23566777788888888888888888776642 23344455556776665555544443
Q ss_pred CCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 334 GVLIADVVTYNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 334 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
.+ .++....+|.+.|++++|++++.++.
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 32 13444445666777777777776654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.033 Score=38.89 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=65.9
Q ss_pred ccccHHHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCChH-HHHHHHHH------HHhcCCHHHHHHHHHHHH
Q 035749 56 CKPDAVIYTTIIDGLCKEGFV------DKAKELLLQMKDKNINPDVV-TYNSVIRG------FCYANDSNEAKRLFIEMM 122 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~~~~~~a~~~~~~~~ 122 (405)
.+.+.++|-..+...-+.|++ ++..++|++.... +||+.. .|...+.. +...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356778888888888888888 8888888888764 455421 11111111 123367777777777776
Q ss_pred HCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 035749 123 DQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 160 (405)
+.. +--...|...+..-.+.|+...|.+++.+.+..+
T Consensus 88 ~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 88 ANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 542 2225666666666667777777777777777665
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.12 Score=41.01 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHCCCC-ccHhhHHHHHHHHHcC-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHH
Q 035749 111 SNEAKRLFIEMMDQGVQ-PNVVTFSVIMDELCKN-----GKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLT-GRVNR 183 (405)
Q Consensus 111 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 183 (405)
...|...+++.++.... .+...|..+...|... |+.++|.+.|++.++.+..-+..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 46777888888875322 1356888899999884 99999999999999985323478888889988885 99999
Q ss_pred HHHHHHHHHhcCCC
Q 035749 184 AKELFVSMESMGCK 197 (405)
Q Consensus 184 a~~~~~~~~~~~~~ 197 (405)
+.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999987544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.085 Score=38.32 Aligned_cols=102 Identities=11% Similarity=0.147 Sum_probs=67.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHH
Q 035749 69 GLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEE 148 (405)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 148 (405)
...+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345678888888887665 2577888888888888888888888877542 3344555566677776
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 035749 149 ASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 191 (405)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (405)
..++-+.....| -++....++...|+++++.++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 666655555444 1334444555677777777777543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.093 Score=35.85 Aligned_cols=139 Identities=12% Similarity=0.040 Sum_probs=71.6
Q ss_pred HhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 035749 30 CRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN 109 (405)
Q Consensus 30 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (405)
.-.|..++..++..+.... .+..-++-+|--....-+-+-..++++.+-+. .|. ...|
T Consensus 18 ildG~v~qGveii~k~~~s---------sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~ 75 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---------STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQ 75 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---------SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCS
T ss_pred HHhhhHHHHHHHHHHHcCC---------CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------Hhhh
Confidence 3456666666666665542 23444555555555545555555555444322 111 1233
Q ss_pred CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 035749 110 DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFV 189 (405)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 189 (405)
++......+-.+- .+...+...+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.
T Consensus 76 NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 76 NLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 3333333332221 13344455555666666666666666664332 25566666666666666666666666666
Q ss_pred HHHhcCC
Q 035749 190 SMESMGC 196 (405)
Q Consensus 190 ~~~~~~~ 196 (405)
++-+.|+
T Consensus 150 ~AC~kG~ 156 (172)
T 1wy6_A 150 EACKKGE 156 (172)
T ss_dssp HHHHTTC
T ss_pred HHHHhhh
Confidence 6666553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.1 Score=35.64 Aligned_cols=82 Identities=15% Similarity=0.039 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHH
Q 035749 318 SGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVEL 397 (405)
Q Consensus 318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 397 (405)
+|+.......+-.+-. +.......+.....+|+-++-.+++..+... -+|++.....+..+|.+.|+..+|.++
T Consensus 74 C~NlKrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp CSCTHHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 4444444444443322 4556667777788888888888888886442 577788888888888888888888888
Q ss_pred HHHhhhcC
Q 035749 398 LHRMDERN 405 (405)
Q Consensus 398 ~~~~~~~~ 405 (405)
+.+.-++|
T Consensus 148 l~~AC~kG 155 (172)
T 1wy6_A 148 LIEACKKG 155 (172)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 88877765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.034 Score=37.73 Aligned_cols=82 Identities=11% Similarity=0.023 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCC-ccHhhHHHHHHHHHcCCCHHHHHHH
Q 035749 77 DKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNE---AKRLFIEMMDQGVQ-PNVVTFSVIMDELCKNGKMEEASQL 152 (405)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 152 (405)
..+.+-|.+....| .++..+-..+..++++..+... ++.+++.+.+.+.+ -.......+.-++.+.|++++|.+.
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444454444433 3666666677777777665544 67777776665311 1334444556667777777777777
Q ss_pred HHHHHHc
Q 035749 153 LELMIQI 159 (405)
Q Consensus 153 ~~~~~~~ 159 (405)
++.+++.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777766
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.28 E-value=5.2e-06 Score=69.72 Aligned_cols=263 Identities=13% Similarity=0.126 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL 140 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (405)
.+|..|..+....++..+|++.| ++. .|+..|..++....+.|.+++-.+.+...++..-.| ..=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHH
Confidence 34444444444444444444332 111 134444444444444455444444444433332222 2223444444
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHH
Q 035749 141 CKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGAL 220 (405)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 220 (405)
++.++..+.++++. .|+..-...+..-|...|.++.|.-+|..+. -|..|...+.+.|++..|.
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHH
Confidence 44444333222211 2333333344444444444444443333221 1222333344444444443
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC
Q 035749 221 SLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK 300 (405)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 300 (405)
+.-++ ..+..||..+..+|...+.+.-|...--.++-. +.-+..++..|...|.+++.+.+++......
T Consensus 191 daArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE 259 (624)
T 3lvg_A 191 DGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE 259 (624)
T ss_dssp TTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST
T ss_pred HHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 32211 236678888888888888877665554444322 1223345667888899999999988887544
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCc-------cHHHHHHHHHHHHcCCCHHHHH
Q 035749 301 CELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIA-------DVVTYNIMIHALCADGKMDKAH 360 (405)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~ 360 (405)
......++.|+-.|++- ++++..+.++..-.+--.| ....|..++..|.+-.+++.|.
T Consensus 260 -rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 260 -RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp -TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred -chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 56788888888888866 6777777776644321122 2335777777777777777664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.24 E-value=0.81 Score=43.07 Aligned_cols=267 Identities=11% Similarity=0.037 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CccHh
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD--VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGV-------QPNVV 131 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~ 131 (405)
..-....-+.+..|+.++++.++......+...+ ...=..+.-+.+..|..+++...+...+...- .+...
T Consensus 375 k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir 454 (963)
T 4ady_A 375 KFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLL 454 (963)
T ss_dssp HHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred HHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHH
Confidence 3334444456677888888888887765211122 22333444455566665667777666654311 01112
Q ss_pred hHHH--HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 035749 132 TFSV--IMDELCKNGKMEEASQLLELMIQIGVRPNAF--VYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILI 207 (405)
Q Consensus 132 ~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 207 (405)
.-.. |..++.-.++ +++...+..++... .+... .-..+...+.-.|+.+....++..+.+.. ..+..-...+.
T Consensus 455 ~gAaLGLGla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalg 531 (963)
T 4ady_A 455 HGASLGIGLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVG 531 (963)
T ss_dssp HHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHH
Confidence 2222 3333333444 44555555555432 11111 12234445667777777777777766532 22222233333
Q ss_pred HHHhhcCChHHHHHHHHHHHhCCCCCchhhH--HHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCC
Q 035749 208 NGYCKNKEIEGALSLYSEMLSKGIKPTVVTY--NTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGY 285 (405)
Q Consensus 208 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 285 (405)
-++...|+.+.+..+.+.+.... .|....- ..+.-+|+..|+......++..+.... ..+..-...+.-++...|+
T Consensus 532 LGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 532 LALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp HHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSS
T ss_pred HHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCC
Confidence 44556788888888888777641 2222211 233446777888877777888877642 2233333333334445677
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH-HHHHHHHhhccC
Q 035749 286 IVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRL-KIAWELFHSLPR 333 (405)
Q Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 333 (405)
.+.+.++++.+.+.+ .|....-..++.+....|.. .++.+.+..+..
T Consensus 610 ~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 610 YTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp CSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666777776665544 45555444444555555553 567778877765
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.98 E-value=1.1 Score=42.25 Aligned_cols=297 Identities=11% Similarity=-0.002 Sum_probs=164.6
Q ss_pred HHHHHHHHhcCChHHH-HHHH-HHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCccHhhHHHHHHH
Q 035749 64 TTIIDGLCKEGFVDKA-KELL-LQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQG--VQPNVVTFSVIMDE 139 (405)
Q Consensus 64 ~~l~~~~~~~~~~~~a-~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 139 (405)
..+..++...|--.+. +... +.+.+. .+....-....-+.+..|+.++++..+...+..+ -.+....-..+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 3455566666643322 2222 233332 2222223333445677889999988887766421 12222333334444
Q ss_pred HHcCCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHH--HccCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHH
Q 035749 140 LCKNGKMEEASQLLELMIQIGV-------RPNAFVYNTLMDGF--CLTGRVNRAKELFVSMESMGCKHNV--FSYSILIN 208 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~ 208 (405)
....|..+++..++...+...- .+....-..+.-+. .-.++ +++...+..+.... .... .+-..+..
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGl 498 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGL 498 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Confidence 5566665677777777665421 01122223333333 33444 35555555555432 1111 12224455
Q ss_pred HHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHH--HHHHHHHhcCCCh
Q 035749 209 GYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAY--RTFIDGLCKNGYI 286 (405)
Q Consensus 209 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~ 286 (405)
.++..|+.+....++..+.+.. .-+..-...+.-++...|+.+.+..+++.+.... .|....- ..+.-+|+..|+.
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCH
T ss_pred hhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCH
Confidence 5677888888888888777642 2122222333344557788888888888877642 3333222 2344567788998
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCH-HHHHHHHHH
Q 035749 287 VEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKM-DKAHDLFLD 365 (405)
Q Consensus 287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 365 (405)
....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|.+..-..+..+....|+. .+++.++..
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 87777988887642 3344444444455666788777888887776653 45555444555555555554 678888888
Q ss_pred HHh
Q 035749 366 MEA 368 (405)
Q Consensus 366 ~~~ 368 (405)
+..
T Consensus 655 L~~ 657 (963)
T 4ady_A 655 LTK 657 (963)
T ss_dssp HHT
T ss_pred Hcc
Confidence 875
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.82 E-value=6.4e-07 Score=75.01 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=109.9
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
.+..|..+.++....+...+|++-|-++ .|+..|..++....+.|.+++-+..++-.++.. .++..
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~I 118 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYV 118 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--ccccc
Confidence 4567999999999999988887765433 356678999999999999999999998777653 34455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
=+.|+.+|++.++..+-.+.+ ..||..-...+..-|...|.++.|.-+|..+.. |..|...+..
T Consensus 119 DteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~ 182 (624)
T 3lvg_A 119 ETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVH 182 (624)
T ss_dssp THHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSS
T ss_pred HHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHH
Confidence 568999999999876654433 235666667778888888888887776654422 2233334445
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHH
Q 035749 178 TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGA 219 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 219 (405)
.|++..|.+.-++ ..++.+|..+-.+|...+.+.-|
T Consensus 183 L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 183 LGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp CSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTT
T ss_pred HHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHH
Confidence 5555544432221 22344555555555555544443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.25 Score=45.34 Aligned_cols=56 Identities=21% Similarity=0.067 Sum_probs=45.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhcc
Q 035749 276 FIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLP 332 (405)
Q Consensus 276 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 332 (405)
-+..+...|+++.|+.+-++..... |.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3455667888999999988888764 6678889999999999999999988888764
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.33 Score=33.11 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=46.2
Q ss_pred CccHHHHHHHHHHHHhcCCH---HHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 035749 302 ELDIRSYSCLIDGLCKSGRL---KIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDC 375 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 375 (405)
.|+..+-..+++++.++.+. .+++.+++.+.+.+..-....+-.+..++.+.|++++|.+..+.+++. .|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 56667777777777776654 356666666655432223455566667777788888888877777764 4543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.94 E-value=1.6 Score=37.59 Aligned_cols=190 Identities=8% Similarity=0.102 Sum_probs=110.8
Q ss_pred cCCHHHHHHHHHHHHhc-----CCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhC-CCCCchhhHHHHHHHHH----c
Q 035749 178 TGRVNRAKELFVSMESM-----GCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPTVVTYNTLFIGLF----E 247 (405)
Q Consensus 178 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~----~ 247 (405)
.|+++.|++.+..+.+. +..........++..|...++++...+.+..+... |..+ .....++..+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 37788888877666542 23445666778888999999999888877766553 3222 22233333322 1
Q ss_pred cccHHH--HHHHHHHHHH--cC-CCc---cHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCc-c----HHHHHHHHHH
Q 035749 248 IHQVER--AFKLFDEMQR--HG-VAA---DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCEL-D----IRSYSCLIDG 314 (405)
Q Consensus 248 ~~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~ 314 (405)
....+. -..+...... .| +-. .......+...+...|++.+|..++..+...-... + ...+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 222121 1111111110 11 111 12334566777888888888888888875431111 1 2456666777
Q ss_pred HHhcCCHHHHHHHHhhccC----CCcCcc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 315 LCKSGRLKIAWELFHSLPR----GVLIAD--VVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
|...+++.+|..+++++.. ....|+ ...+...+..+...++|.+|.+.|.++...
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8888888888888877532 112222 234566667777788888888877777663
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.25 Score=45.32 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=33.8
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 035749 349 ALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 401 (405)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 401 (405)
.+...|+++-|+.+-++.... .+-+..+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345566777777777776664 3445667777777777777777776666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.26 Score=41.66 Aligned_cols=80 Identities=10% Similarity=0.085 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCccHhhHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMD-----QGVQPNVVTFS 134 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 134 (405)
..+...++..+...|++++++..+..+.... |.+...|..++.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3456677888888999999998888887764 77888999999999999999999999988754 48888877655
Q ss_pred HHHHHH
Q 035749 135 VIMDEL 140 (405)
Q Consensus 135 ~l~~~~ 140 (405)
..-..+
T Consensus 250 l~~~il 255 (388)
T 2ff4_A 250 LNERIL 255 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.65 E-value=1.9 Score=37.11 Aligned_cols=50 Identities=20% Similarity=0.322 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHC-----CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 035749 109 NDSNEAKRLFIEMMDQ-----GVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ 158 (405)
Q Consensus 109 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 158 (405)
|+++.|++.+..+.+. +...+......++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6677777766555432 2333455566777777788888777776665544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=2.6 Score=38.02 Aligned_cols=116 Identities=9% Similarity=-0.026 Sum_probs=67.1
Q ss_pred ccHHHHHHHHHHHHHcCCCccHHH----HHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 035749 249 HQVERAFKLFDEMQRHGVAADTWA----YRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (405)
.+.+.|...+....... ..+... ...+.......+...++...+...... ..+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 46788888887775432 222222 222222333444345555566554433 23333444444555567888888
Q ss_pred HHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 325 WELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
...|+.+..... ......-.+.+++...|+.++|..+|+.+..
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888876422 2334344566677788888888888877654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.29 Score=34.98 Aligned_cols=133 Identities=9% Similarity=0.015 Sum_probs=69.6
Q ss_pred CCCCChh--HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 14 GCEPNVI--TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKP--DAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 14 ~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
|..|... ++..-++.+...|.++.|+-+.+.+...........+| ...++..+..++...+++.+|...|++..+.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4444443 45556888999999999999888866542100000112 1346788889999999999999999996432
Q ss_pred C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 90 N--INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 90 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
. ++-+..+...+.. ...... ......+...-..+..+|.+.+++++|+.+++.+...
T Consensus 93 ~k~l~k~~s~~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHhcCCCccccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1 1111111111100 000000 0011223444445677777788888888777765433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.86 Score=31.58 Aligned_cols=71 Identities=11% Similarity=0.036 Sum_probs=44.0
Q ss_pred CccHHHHHHHHHHHHhcCCHH---HHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 035749 302 ELDIRSYSCLIDGLCKSGRLK---IAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPD 374 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 374 (405)
.|+..+-..+++++.++.+.+ +++.+++.+.+.+..-.....-.+..++.+.|++++|.++.+.+++. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 466666666777777666533 45666666654322223444555666777777777777777777774 554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.23 E-value=0.68 Score=31.64 Aligned_cols=68 Identities=7% Similarity=0.112 Sum_probs=42.1
Q ss_pred CCChHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 92 NPDVVTYNSVIRGFCYANDS---NEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.|++.+--.+..++++..+. .+++.+++.+.+.+..-....+..+.-++.+.|++++|.+..+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 45666666666666666543 456666766666543223445555666677777777777777777665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.49 Score=40.00 Aligned_cols=78 Identities=4% Similarity=-0.022 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ-----IGVRPNAFVYNTL 171 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 171 (405)
+...++..+...|+..++...+..+.... +.+...+..++.++...|+..+|++.|+.+.+ .|+.|...+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45567788889999999999999988763 44888999999999999999999999988754 4899988765544
Q ss_pred HHHH
Q 035749 172 MDGF 175 (405)
Q Consensus 172 ~~~~ 175 (405)
-...
T Consensus 252 ~~il 255 (388)
T 2ff4_A 252 ERIL 255 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.86 E-value=2.9 Score=41.19 Aligned_cols=131 Identities=11% Similarity=0.150 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 035749 131 VTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNA----FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSIL 206 (405)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (405)
..|..++..+.+.+.++.+.++-...++...+.+. ..|..+.+.+...|++++|...+-.+.... .-......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHH
Confidence 45677888888888888888888777765322222 257778888889999999988888776653 334555666
Q ss_pred HHHHhhcCC------------hHHHHHHHHHHHh-C-CCCCchhhHHHHHHHHHccccHHHHH-HHHHHHHH
Q 035749 207 INGYCKNKE------------IEGALSLYSEMLS-K-GIKPTVVTYNTLFIGLFEIHQVERAF-KLFDEMQR 263 (405)
Q Consensus 207 ~~~~~~~~~------------~~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 263 (405)
+..++..+. .++..+++..-.+ . .+...+.-|..|-.-+...|++-.|- -+|+.+.+
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 665555444 3445555543222 1 11111223455555555667765544 44555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.46 E-value=0.46 Score=30.44 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=47.6
Q ss_pred HhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHH
Q 035749 3 AAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIID 68 (405)
Q Consensus 3 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 68 (405)
..+-++.+...+.-|++....+.+++|.+-+++.-|+++|+.+...- .+...+|..+++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-------~~~~~iY~~~lq 87 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-------GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-------cCchhhHHHHHH
Confidence 45566777777889999999999999999999999999999988664 333456766664
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.08 E-value=1.5 Score=30.41 Aligned_cols=68 Identities=7% Similarity=0.112 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 92 NPDVVTYNSVIRGFCYANDS---NEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.|+..+--.+..++++..+. .+++.+++.+.+.+..-.......+.-++.+.|++++|.+..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45666666666666666543 456667777666543334444555666677777777777777777765
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.82 E-value=2.6 Score=41.52 Aligned_cols=133 Identities=10% Similarity=0.039 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHH
Q 035749 164 NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNV----FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYN 239 (405)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (405)
-..-|..++..+.+.+.++.+.++-+...+...+.+. ..|..+.+.+...+++++|...+-.+..... -...+.
T Consensus 898 l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr 975 (1139)
T 4fhn_B 898 LSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLL 975 (1139)
T ss_dssp SHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHH
Confidence 3456788889999999999999988887765322222 2578889999999999999999988776533 345566
Q ss_pred HHHHHHHccccH------------HHHHHHHHHHHH-c-CCCccHHHHHHHHHHHhcCCChHHH-HHHHHHHHh
Q 035749 240 TLFIGLFEIHQV------------ERAFKLFDEMQR-H-GVAADTWAYRTFIDGLCKNGYIVEA-LELFRTLRI 298 (405)
Q Consensus 240 ~l~~~~~~~~~~------------~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 298 (405)
.++...+..+.. +++.+++..-.+ . .....+.-|..+-.-+...|++.+| .-+|+.+.+
T Consensus 976 ~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 676666655543 444444433221 1 1111123344444444555655544 444555543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.49 E-value=2.1 Score=30.61 Aligned_cols=30 Identities=17% Similarity=0.126 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhccC
Q 035749 304 DIRSYSCLIDGLCKSGRLKIAWELFHSLPR 333 (405)
Q Consensus 304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 333 (405)
+...-..+..+|.+.+++++|+.+++.+..
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 444555566667777777777777666644
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=92.48 E-value=2.9 Score=32.73 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=71.8
Q ss_pred HHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccH----HHHHHHHHHHHhcC
Q 035749 244 GLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDI----RSYSCLIDGLCKSG 319 (405)
Q Consensus 244 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 319 (405)
...+.|+.+.++.....-++.. |.|...-..+++.+|-.|++++|..-++.+.+.. |+. ..|..+|++-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~aE---- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAA---- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHH----
Confidence 4567788888888888877775 7788888888888899999999988888887663 332 2344444331
Q ss_pred CHHHHH-HHHhhccCCC-cCccHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhC
Q 035749 320 RLKIAW-ELFHSLPRGV-LIADVVTYNIMIHALC--ADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 320 ~~~~a~-~~~~~~~~~~-~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 369 (405)
..+ ++|.--..-+ +.....-...++.+.. ..|+.++|..+-.++.+.
T Consensus 79 ---~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 ---QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 111 2222111100 1112223344444443 568899988888887654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.01 E-value=1.6 Score=28.08 Aligned_cols=46 Identities=9% Similarity=-0.016 Sum_probs=22.0
Q ss_pred HHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 323 IAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 323 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
+..+-++.+....+.|++....+.+++|.+.+++..|+++++-.+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3334444444444444555555555555555555555555544443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.01 E-value=5.3 Score=32.27 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHH----HHHHHHHcCCCccHHHHHHHHH
Q 035749 203 YSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFK----LFDEMQRHGVAADTWAYRTFID 278 (405)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~ 278 (405)
|.++..-|.+.+++++|++++..-.. .+.+.|+...|.+ +++...+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33444455666667766666544321 1223344333333 2333344555666666666665
Q ss_pred HHhcCCChH-HHHHHHHHHH----hcC--CCccHHHHHHHHHHHHhcCCHHHHHHHHh
Q 035749 279 GLCKNGYIV-EALELFRTLR----ILK--CELDIRSYSCLIDGLCKSGRLKIAWELFH 329 (405)
Q Consensus 279 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 329 (405)
.+......+ .-.++++.+. +.+ ..-++.....++..|.+.|++.+|...|-
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 554422111 1122222222 111 12366777888888888888888888765
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.78 E-value=2.2 Score=27.33 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=54.5
Q ss_pred cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH
Q 035749 32 TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS 111 (405)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (405)
....++|..+-+.+...+ ....+-..-+..+...|++++|..+.+... -||...|..|.. .+.|--
T Consensus 20 ~H~HqEA~tIAdwL~~~~--------~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~ 85 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKG--------EEEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLG 85 (116)
T ss_dssp TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCH
T ss_pred chHHHHHHHHHHHHHhCC--------cHHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccH
Confidence 345677777777776543 122222223445678889998888776543 567777766644 467777
Q ss_pred HHHHHHHHHHHHCCCCccHhhHH
Q 035749 112 NEAKRLFIEMMDQGVQPNVVTFS 134 (405)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~ 134 (405)
.++...+..+-..| .|....|.
T Consensus 86 s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 86 SALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CHHHHHHH
Confidence 78887777776664 33444443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.53 E-value=2.8 Score=28.66 Aligned_cols=42 Identities=7% Similarity=-0.018 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 035749 290 LELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSL 331 (405)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 331 (405)
.+-++.+...+..|++.+....+++|.+.+++.-|.++|+-+
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~v 114 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 114 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=89.93 E-value=3.4 Score=28.25 Aligned_cols=63 Identities=10% Similarity=0.022 Sum_probs=50.3
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLML 383 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 383 (405)
|.=+..+-++.+....+.|++......+++|.+.+++..|+++|+-.+.+ ..+...+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34456677777777788999999999999999999999999999998876 3444556776654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.48 E-value=2 Score=27.43 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=54.2
Q ss_pred cCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH
Q 035749 32 TGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDS 111 (405)
Q Consensus 32 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (405)
....++|..+-+.+...+ ....+-..-+..+...|++++|..+.+... .||...|..|.. .+.|--
T Consensus 19 ~H~HqEA~tIAdwL~~~~--------~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~ 84 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLG--------QDEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLG 84 (115)
T ss_dssp TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCH
T ss_pred chHHHHHHHHHHHHHhCC--------cHHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccH
Confidence 345677777777776543 122222223445678888988887765443 567777766543 467877
Q ss_pred HHHHHHHHHHHHCCCCccHhhHH
Q 035749 112 NEAKRLFIEMMDQGVQPNVVTFS 134 (405)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~ 134 (405)
+++...+..+-..| .|....|.
T Consensus 85 s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 85 AALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CHHHHHHH
Confidence 88888887777665 33444443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.46 E-value=7.1 Score=33.46 Aligned_cols=99 Identities=9% Similarity=-0.020 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc---CCCCCHHH--H
Q 035749 96 VTYNSVIRGFCYANDSNEAKRLFIEMMDQ--GVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI---GVRPNAFV--Y 168 (405)
Q Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 168 (405)
.+...+...|.+.|++++|.+.|.++... +...-...+...++.+...+++..+...+.++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 45667778888888888888888887753 23334566677777888888888888888776543 22222211 1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 169 NTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
..-+..+...+++..|-+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11223345667788877777666443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.43 E-value=3.4 Score=35.39 Aligned_cols=99 Identities=14% Similarity=0.017 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCccHhhH--
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKN--INPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ---GVQPNVVTF-- 133 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~-- 133 (405)
.+...+...+.+.|+++.|.+.|.++.... ...-...+-.+++.+...+++..+...+.++... +..|+....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 456677777888888888888888776542 2233566777777788888888888777776432 222222211
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 134 SVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 134 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
......+...+++..|.+.|-.....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122334567788877777666544
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.84 E-value=5.4 Score=29.62 Aligned_cols=86 Identities=16% Similarity=0.098 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCCCCcccccccHHH---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHhcCCH
Q 035749 36 IVALNLFEEMINGNGEFGVVCKPDAVI---YTTIIDGLCKEGFVDKAKELLLQMKDKNINP-DVVTYNSVIRGFCYANDS 111 (405)
Q Consensus 36 ~~A~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 111 (405)
++++..|..... ...|+.. |...+..+ ..+...++.++|..|...|+-. -...|......+-..|++
T Consensus 61 Erc~~~F~~~~r--------YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~ 131 (202)
T 3esl_A 61 ERCLIYIQDMET--------YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFF 131 (202)
T ss_dssp HHHHHHHTTCGG--------GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccccc--------ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCH
Confidence 455566655433 3455543 33344333 1455778889999888776533 466778888888889999
Q ss_pred HHHHHHHHHHHHCCCCccH
Q 035749 112 NEAKRLFIEMMDQGVQPNV 130 (405)
Q Consensus 112 ~~a~~~~~~~~~~~~~~~~ 130 (405)
.+|..+|+.-++.+-.|-.
T Consensus 132 ~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 132 LEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHHHcCCccHH
Confidence 9999999998888777653
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.37 E-value=4 Score=31.96 Aligned_cols=56 Identities=29% Similarity=0.395 Sum_probs=42.0
Q ss_pred HHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 27 NGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
..+.+.|++++|++....-++.. |.|...-..+++.++-.|++++|.+=++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-------PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567788888888887777764 567777778888888888888888777777665
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.27 E-value=10 Score=30.60 Aligned_cols=109 Identities=10% Similarity=0.072 Sum_probs=55.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHH
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQ----LLELMIQIGVRPNAFVYNTLMDGFC 176 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (405)
+..-|.+.+++++|++++..- ...+.+.|+...|-+ +++-..+.+.+++......++..+.
T Consensus 39 l~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 333455666666666654432 112233344433333 3344444556666666666665554
Q ss_pred ccCCHH-HHHHHHHHHHh----cC--CCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 035749 177 LTGRVN-RAKELFVSMES----MG--CKHNVFSYSILINGYCKNKEIEGALSLYS 224 (405)
Q Consensus 177 ~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 224 (405)
.....+ .=.++++.+.. .| ..-++..+..+...|.+.+++.+|...|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 432111 11223333322 11 12366778888888888888888877664
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.86 E-value=7.9 Score=28.77 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCc-cHhhHHHHHHHHHcCCCHHHHHHHH
Q 035749 77 DKAKELLLQMKDKNINPDVVTYNSVIRGFCY--ANDSNEAKRLFIEMMDQGVQP-NVVTFSVIMDELCKNGKMEEASQLL 153 (405)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 153 (405)
+++...|..... ..-|+......+...-. .++..++.++|..|...|+-. -...|...+..+-..|++.+|..+|
T Consensus 61 Erc~~~F~~~~r--YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 138 (202)
T 3esl_A 61 ERCLIYIQDMET--YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLL 138 (202)
T ss_dssp HHHHHHHTTCGG--GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhccccc--ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344455544333 24466555554443322 455789999999998876543 3566778888899999999999999
Q ss_pred HHHHHcCCCCCHH
Q 035749 154 ELMIQIGVRPNAF 166 (405)
Q Consensus 154 ~~~~~~~~~~~~~ 166 (405)
+.-++.+-.|-..
T Consensus 139 ~~GI~~~A~P~~r 151 (202)
T 3esl_A 139 ELGAENNCRPYNR 151 (202)
T ss_dssp HHHHHTTCBSHHH
T ss_pred HHHHHcCCccHHH
Confidence 9999988777543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.32 E-value=14 Score=30.18 Aligned_cols=113 Identities=11% Similarity=0.080 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCccHhhHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRL----FIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l 136 (405)
..|..+..-|.+++++++|++++-.-.. .+.+.|+...|-++ .+-+.+.+++++......+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455555556777778777776544321 13333444333332 2333444566666666666
Q ss_pred HHHHHcCCCHH-HHHHHHHHH----HHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 035749 137 MDELCKNGKME-EASQLLELM----IQIG--VRPNAFVYNTLMDGFCLTGRVNRAKELF 188 (405)
Q Consensus 137 ~~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 188 (405)
+..+.....-+ .-.++++.+ .+.| ..-++.....+...|.+.+++.+|...|
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 66555443210 111122222 2222 2235666777788888888888887776
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=82.81 E-value=10 Score=26.70 Aligned_cols=73 Identities=7% Similarity=0.058 Sum_probs=51.7
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHh
Q 035749 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINP-DVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVV 131 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (405)
...|+.-...-+.. ++. .+++.++|..|...++-. -...|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 64 YknD~RyLklWl~y-a~~--~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 64 YHNDPRFISYCLKF-AEY--NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp GTTCHHHHHHHHHH-HTT--BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccCCHHHHHHHHHH-HHh--cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 34555544433332 222 344889999998887643 46678888888999999999999999999987777543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.24 E-value=22 Score=29.99 Aligned_cols=168 Identities=10% Similarity=-0.063 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCChHHH-
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKE-GFVDKAKELLLQMKDKNINPDVVTY- 98 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~- 98 (405)
+...+...|.+.|+.++..+++.....--+... ..........++..+... +..+.-.++..+..+-. .-...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSIS--KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC--HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456788888889998888888877654321100 011244566666666653 33333333333332210 0011222
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----ccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCCCHH
Q 035749 99 -----NSVIRGFCYANDSNEAKRLFIEMMDQGVQ-----PNVVTFSVIMDELCKNGKMEEASQLLELMIQIG--VRPNAF 166 (405)
Q Consensus 99 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 166 (405)
..++..|...|++.+|.+++..+.+.=.. .-...+..-+..|...+++.++...+....... +.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 24677777888888887777777653111 112334445556677777777777776664331 223332
Q ss_pred HHHHH----HHHHH-ccCCHHHHHHHHHHH
Q 035749 167 VYNTL----MDGFC-LTGRVNRAKELFVSM 191 (405)
Q Consensus 167 ~~~~l----~~~~~-~~~~~~~a~~~~~~~ 191 (405)
+...+ ...+. ..+++..|...|-+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 22211 22344 567777776666554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.85 E-value=20 Score=29.31 Aligned_cols=26 Identities=12% Similarity=-0.040 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHH
Q 035749 303 LDIRSYSCLIDGLCKSGRLKIAWELF 328 (405)
Q Consensus 303 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 328 (405)
-|+.....++..|.+.+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35666677777788888888887776
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 405 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.79 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.78 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.56 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.52 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.51 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.5 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.49 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.49 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.49 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.46 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.43 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.4 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.06 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.05 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.02 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.02 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.0 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.0 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.96 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.96 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.96 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.91 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.91 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.84 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.81 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.79 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.69 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.67 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.63 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.61 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.56 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.52 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.49 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.47 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.45 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.4 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.4 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.38 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.37 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.37 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.33 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.28 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.23 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.22 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.19 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.14 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.13 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.85 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.77 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.56 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.43 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.31 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.72 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.22 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.02 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.97 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.96 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.5 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.58 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.09 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 88.56 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.7e-26 Score=194.46 Aligned_cols=372 Identities=15% Similarity=0.068 Sum_probs=279.9
Q ss_pred hHhHHHHHHhhcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHH
Q 035749 2 EAAALFTKLKAFGCEPNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKE 81 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 81 (405)
+|++.|+.+.+.. |-++.++..+..++.+.|++++|+..|+++++.+ |.++.++..++.++.+.|++++|+.
T Consensus 17 ~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 17 AAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHhhhhcccccccc
Confidence 5666666666653 3345566666677777777777777777766654 3455666667777777777777777
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 035749 82 LLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGV 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (405)
.+....+.. +.+..............+....+............. ...............+....+...+.......
T Consensus 89 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (388)
T d1w3ba_ 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred ccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhccC-
Confidence 776666553 334444444444444555555555444444433222 33344445556667777788888887777664
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHH
Q 035749 162 RPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTL 241 (405)
Q Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 241 (405)
+.+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|+..+.+....+ +.+...+..+
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 243 (388)
T d1w3ba_ 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNL 243 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHH
Confidence 5567788888899999999999999999988775 5567788899999999999999999999988764 3456677788
Q ss_pred HHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCH
Q 035749 242 FIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRL 321 (405)
Q Consensus 242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (405)
...+.+.|++++|...++++.+.. +.+..++..+..++...|++++|...++...... +.+...+..++..+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 321 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCH
Confidence 889999999999999999998875 5567888889999999999999999999988765 67888899999999999999
Q ss_pred HHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCc
Q 035749 322 KIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNE 390 (405)
Q Consensus 322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 390 (405)
++|...|+++.+.. +.+..++..++.++...|++++|+..|+++++.. +-+...|..++.+|.+.||
T Consensus 322 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 322 EEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 99999999988753 2357788899999999999999999999999852 3357788899998888775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.9e-26 Score=192.80 Aligned_cols=364 Identities=13% Similarity=0.065 Sum_probs=305.1
Q ss_pred HHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 035749 25 LINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRG 104 (405)
Q Consensus 25 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 104 (405)
+...+.+.|++++|++.|+++++.. |.++.++..+..++.+.|++++|+..++++.+.+ |.+..++..+..+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~ 76 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5667889999999999999999875 5678899999999999999999999999998875 5578899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 035749 105 FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRA 184 (405)
Q Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 184 (405)
+...|++++|+..+....+.... +..............+....+........... .................+....+
T Consensus 77 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
T d1w3ba_ 77 YKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred hhhhccccccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhh
Confidence 99999999999999999887443 44444555555555566666666666555554 44555556666777788888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc
Q 035749 185 KELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH 264 (405)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 264 (405)
...+....... +.+...+..+...+...|+++.|...+.+..... +.+...+..+...+...|++++|...+......
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 88888887764 5567788889999999999999999999988763 335667888999999999999999999999887
Q ss_pred CCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHH
Q 035749 265 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYN 344 (405)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 344 (405)
+ +.+...+..+...+.+.|++++|...++++.+.. |.+..++..++..+...|++++|.+.++..... .+.+...+.
T Consensus 233 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 309 (388)
T d1w3ba_ 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred h-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhh
Confidence 5 5667788889999999999999999999998875 567888999999999999999999999988765 344778889
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc
Q 035749 345 IMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER 404 (405)
Q Consensus 345 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 404 (405)
.+...+...|++++|+..++++++. .+.+..++..+..++.+.|++++|...+++..+.
T Consensus 310 ~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 310 NLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999986 2446778899999999999999999999998753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.4e-16 Score=129.81 Aligned_cols=272 Identities=13% Similarity=-0.008 Sum_probs=170.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTG 179 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (405)
.....+.+.|++++|+..|+++++..+. +..+|..+..++...|++++|...+.++.+.. +.+...+..++.++...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 4455566777777777777777766433 56667777777777777777777777776664 445666666777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCChhh-HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHH
Q 035749 180 RVNRAKELFVSMESMGCKHNVFS-YSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLF 258 (405)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 258 (405)
++++|.+.++.+.... |+... +........ ..+.......+..+...+.+.++...+
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 7777777777766542 22111 000000000 000001111122233455667777777
Q ss_pred HHHHHcCC-CccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcC
Q 035749 259 DEMQRHGV-AADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI 337 (405)
Q Consensus 259 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 337 (405)
.++.+... ..+...+..+...+...|++++|...++++.... +.+..++..++.++...|++++|.+.|+++.+.. +
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 237 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-P 237 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-h
Confidence 77665431 2345667777788888888888888888887765 5567778888888888888888888888877642 2
Q ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHccCchhHHHHH
Q 035749 338 ADVVTYNIMIHALCADGKMDKAHDLFLDMEAK----------GVAPDCVAFNTLMLGCIRNNETSKVVEL 397 (405)
Q Consensus 338 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 397 (405)
-+..+|..++.+|.+.|++++|+..|+++++. ........|..+-.++...|+.+.+...
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 25677888888888888888888888888763 1111223455566666666666555433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.9e-16 Score=129.30 Aligned_cols=231 Identities=13% Similarity=0.075 Sum_probs=149.9
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
.......+.+.|++++|+..|+++++.+ |.+..+|..++.++...|++++|...|++..+.. |-+...+..+
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 93 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMAL 93 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccc
Confidence 3456778899999999999999999986 5678899999999999999999999999998774 5578889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhH---------------HHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTF---------------SVIMDELCKNGKMEEASQLLELMIQIGV-RPNA 165 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 165 (405)
+..+...|++++|.+.++........ ....+ ...+..+...+.+.++...+.+..+... ..+.
T Consensus 94 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~ 172 (323)
T d1fcha_ 94 AVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 172 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred cccccccccccccccchhhHHHhccc-hHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999998875322 11110 0111122223344555555555544321 1234
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 035749 166 FVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGL 245 (405)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 245 (405)
.++..+...+...|++++|...+++..... +.+..+|..+...+...|++++|++.|++.++.. +-+..++..++.+|
T Consensus 173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 250 (323)
T d1fcha_ 173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISC 250 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHH
Confidence 445555555555666666666666555443 3345555555555666666666666665555432 12334455555555
Q ss_pred HccccHHHHHHHHHHHHH
Q 035749 246 FEIHQVERAFKLFDEMQR 263 (405)
Q Consensus 246 ~~~~~~~~a~~~~~~~~~ 263 (405)
.+.|++++|...|.+.++
T Consensus 251 ~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 251 INLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 555666666555555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=6.1e-12 Score=101.98 Aligned_cols=215 Identities=11% Similarity=0.050 Sum_probs=169.9
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCChHH
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEG-FVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
..+++.+...+.+.+.+++|++.++++++.+ |.+..+|+....++...| ++++|+..++...+.. |-+..+
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a 114 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQV 114 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhH
Confidence 3467778888889999999999999999986 567889999999988876 4899999999998875 567899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 035749 98 YNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL 177 (405)
Q Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (405)
|..+...+.+.|++++|+..++++++..+. +...|..+..++...|++++|+..++++++.+ +.+...|+.+..++..
T Consensus 115 ~~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~ 192 (315)
T d2h6fa1 115 WHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 192 (315)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHH
Confidence 999999999999999999999999987544 78899999999999999999999999999986 5677788877776665
Q ss_pred cCC------HHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCC-chhhHHHHHHHH
Q 035749 178 TGR------VNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP-TVVTYNTLFIGL 245 (405)
Q Consensus 178 ~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 245 (405)
.+. +++|+..+..+.+.. |.+...|..+...+.. ...+++.+.++...+....+ +...+..+...|
T Consensus 193 ~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 193 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred ccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 554 678888888888875 5577777777666554 44577778887776643222 233344444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=4.8e-11 Score=98.99 Aligned_cols=305 Identities=11% Similarity=0.033 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----C-cc
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD-----VVTYNSVIRGFCYANDSNEAKRLFIEMMDQGV----Q-PN 129 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~ 129 (405)
+.........+...|++++|++++++..+.. +.+ ..++..+..++...|++++|...|++..+... . ..
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 3444555666677788888888887776653 222 23455566677777777777777776654211 0 01
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhh
Q 035749 130 VVTFSVIMDELCKNGKMEEASQLLELMIQI----GVRPN---AFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFS 202 (405)
Q Consensus 130 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (405)
...+..+...+...|++..+...+...... +.... ...+..+...+...|+++.+...+..........
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~---- 166 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY---- 166 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh----
Confidence 223344445555666666666665554431 11111 1123334444455555555555554443321110
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHc----CCCc--cHHHHHHH
Q 035749 203 YSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRH----GVAA--DTWAYRTF 276 (405)
Q Consensus 203 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l 276 (405)
+.......+......+...++...+...+...... +..+ ....+...
T Consensus 167 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T d1hz4a_ 167 ---------------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 219 (366)
T ss_dssp ---------------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred ---------------------------hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHH
Confidence 00111112222333334444444444444433221 0000 11123333
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHhcCCHHHHHHHHhhccC----CCcCc-cHHHHHHHHH
Q 035749 277 IDGLCKNGYIVEALELFRTLRILKC---ELDIRSYSCLIDGLCKSGRLKIAWELFHSLPR----GVLIA-DVVTYNIMIH 348 (405)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~ 348 (405)
...+...|++++|...++....... +.....+..++.++...|++++|...++.+.. .+..| ....+..+..
T Consensus 220 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 299 (366)
T d1hz4a_ 220 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 299 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHH
Confidence 4445555666666666655543321 11233444556666666666666666665431 11222 2345566666
Q ss_pred HHHcCCCHHHHHHHHHHHHhC----CCC----CCHHHHHHHHHHHHccCchhHHHH
Q 035749 349 ALCADGKMDKAHDLFLDMEAK----GVA----PDCVAFNTLMLGCIRNNETSKVVE 396 (405)
Q Consensus 349 ~~~~~g~~~~A~~~~~~~~~~----~~~----~~~~~~~~l~~~~~~~g~~~~a~~ 396 (405)
+|...|++++|.+.+++.++. |.. .....+..++..+...++.+++.+
T Consensus 300 ~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 300 LYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 666777777777776665542 211 112334445556666676666544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=1.2e-11 Score=100.28 Aligned_cols=185 Identities=11% Similarity=0.039 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 035749 36 IVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAK 115 (405)
Q Consensus 36 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 115 (405)
++|..+|+++++.. .+.+...|...+....+.|+++.|..+|+++.+.........|...+....+.|+++.|.
T Consensus 81 ~~a~~i~~ral~~~------~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar 154 (308)
T d2onda1 81 DEAANIYERAISTL------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHHHTTT------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHH
Confidence 45555555555433 233444555555555555556666666555554421112234555555555555555555
Q ss_pred HHHHHHHHCCCCccHhhHHHHHHH-HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 116 RLFIEMMDQGVQPNVVTFSVIMDE-LCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
++|+.+++.++. +...|...+.. +...|+.+.|..+|+.+.+.. +.+...+...+......|+++.|..+|++....
T Consensus 155 ~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 155 MIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 555555544322 22222222222 223345555555555555442 334445555555555555555555555555443
Q ss_pred C-CCC--ChhhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 035749 195 G-CKH--NVFSYSILINGYCKNKEIEGALSLYSEMLS 228 (405)
Q Consensus 195 ~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (405)
. .+| ....|...+..-...|+.+.+.++++++.+
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 111 122344444444445555555555554433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=1.8e-11 Score=101.68 Aligned_cols=277 Identities=9% Similarity=-0.010 Sum_probs=187.7
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CC----C
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI-NP----D 94 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~ 94 (405)
.........+...|++++|+++++++++..+... .+....++..+..++...|++++|+..+++..+... .+ .
T Consensus 13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~--~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGW--FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC--cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 3445556778899999999999999998753210 011134778889999999999999999998865311 11 1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--c-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC----C
Q 035749 95 VVTYNSVIRGFCYANDSNEAKRLFIEMMDQ----GVQ--P-NVVTFSVIMDELCKNGKMEEASQLLELMIQIGVR----P 163 (405)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~ 163 (405)
...+..+...+...|++..+...+...... +.. + ....+..+...+...|+++.+...+......... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 170 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence 345566778888999999999998877642 111 1 1235556778889999999999999988765322 2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC--CC----ChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCc---
Q 035749 164 NAFVYNTLMDGFCLTGRVNRAKELFVSMESMGC--KH----NVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPT--- 234 (405)
Q Consensus 164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 234 (405)
....+......+...+++..+...+........ .. ....+..+...+...|+++.|...+..........+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 250 (366)
T d1hz4a_ 171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 250 (366)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence 234555666778888888888888877654311 11 123455666777788888888888887665422211
Q ss_pred hhhHHHHHHHHHccccHHHHHHHHHHHHH----cCCCcc-HHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 035749 235 VVTYNTLFIGLFEIHQVERAFKLFDEMQR----HGVAAD-TWAYRTFIDGLCKNGYIVEALELFRTLRI 298 (405)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 298 (405)
...+..+...+...|++++|...++.+.. .+..|+ ...+..+..++...|++++|.+.+++...
T Consensus 251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23345566777888888888888877653 122222 34556666777777777777777776654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.49 E-value=8.9e-13 Score=108.50 Aligned_cols=277 Identities=10% Similarity=-0.017 Sum_probs=189.1
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHH----------hcCChHHHHHHHHHHHhCCC
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLC----------KEGFVDKAKELLLQMKDKNI 91 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~~~~~~~~~ 91 (405)
...++......+..++|+++++++++.+ |.+...|+..-..+. ..|++++|+..++...+.+
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~-------P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~- 103 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN- 103 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-
Confidence 3334444434444589999999999876 345556654433332 3345788999999888764
Q ss_pred CCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCccHhhHH-HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 035749 92 NPDVVTYNSVIRGFCYAN--DSNEAKRLFIEMMDQGVQPNVVTFS-VIMDELCKNGKMEEASQLLELMIQIGVRPNAFVY 168 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 168 (405)
|.+...|..+..++...+ ++++|...+..+...... +...+. .....+...+.+++|+..++.+++.+ +.+...|
T Consensus 104 pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~ 181 (334)
T d1dcea1 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 181 (334)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHH
T ss_pred CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHH
Confidence 557777777777766655 578999999998876433 444443 44567777889999999999888875 5678888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHcc
Q 035749 169 NTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEI 248 (405)
Q Consensus 169 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 248 (405)
..+..++...|++++|...++...... |. .......+...+..+.+...+....... +++...+..+...+...
T Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~ 255 (334)
T d1dcea1 182 HYRSCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVL 255 (334)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHH
Confidence 888888888888887766655444331 11 1122333455566777888887777653 33444555666677778
Q ss_pred ccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 035749 249 HQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLC 316 (405)
Q Consensus 249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (405)
+++++|...+.+....+ +.+...+..+..++...|++++|...++++.+.. |.+...|..+...+.
T Consensus 256 ~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 256 QSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHHHHHHHh
Confidence 88888888888887664 4456677778888888888999999888888764 334555565555444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.4e-11 Score=98.44 Aligned_cols=215 Identities=8% Similarity=-0.013 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCccHhhHHHHHH
Q 035749 60 AVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAN-DSNEAKRLFIEMMDQGVQPNVVTFSVIMD 138 (405)
Q Consensus 60 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (405)
..+++.+...+.+.+.+++|+.+++++++.+ |-+..+|+....++...| ++++|+..++..++..+. +..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 5677888888888999999999999999875 557788888888888776 589999999999887544 7888888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCC---
Q 035749 139 ELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKE--- 215 (405)
Q Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 215 (405)
++.+.|++++|+..++++++.. +.+...|..+..++...|++++|+..++.+.+.+ +.+..+|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 9999999999999999998875 6678889999999999999999999999998875 5567778777766665554
Q ss_pred ---hHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHH
Q 035749 216 ---IEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVA-ADTWAYRTFIDGL 280 (405)
Q Consensus 216 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 280 (405)
+++|+..+.+++... +.+...+..+...+...+ .+++...+....+.... .+...+..++..|
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 467777777777653 335555655555544333 45566666655543221 2333444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=6.1e-11 Score=95.96 Aligned_cols=221 Identities=10% Similarity=0.033 Sum_probs=156.6
Q ss_pred hHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 35 TIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKE--------------GFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 35 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
.+.+..+|++++... +.++..|...+..+... +..++|..+|++..+...+.+...|..
T Consensus 32 ~~Rv~~vyerAl~~~-------~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ 104 (308)
T d2onda1 32 TKRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 356778899988763 56677777766654432 235778888888876544556677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccC
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDG-FCLTG 179 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 179 (405)
.+......|+++.|..+|+++++.........|...+..+.+.|+++.|.++|+++.+.+ +.+...|...+.. +...|
T Consensus 105 ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~ 183 (308)
T d2onda1 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcc
Confidence 888888888888888888888876444334567788888888888888888888887764 4455555554443 34457
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCC-CCCc--hhhHHHHHHHHHccccHHHHHH
Q 035749 180 RVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IKPT--VVTYNTLFIGLFEIHQVERAFK 256 (405)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~ 256 (405)
+.+.|..+|+.+.... +.+...|...+..+.+.|+.+.|..+|++.+... ..|+ ...|...+..-...|+.+.+..
T Consensus 184 ~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~ 262 (308)
T d2onda1 184 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7888888888887763 5567778888888888888888888888877753 2332 2355666665567788888888
Q ss_pred HHHHHHHc
Q 035749 257 LFDEMQRH 264 (405)
Q Consensus 257 ~~~~~~~~ 264 (405)
+++++.+.
T Consensus 263 ~~~r~~~~ 270 (308)
T d2onda1 263 VEKRRFTA 270 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=3.3e-12 Score=100.97 Aligned_cols=96 Identities=11% Similarity=-0.014 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHH
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNS 100 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (405)
+|..+..+|.+.|++++|+..|+++++.+ |.++.+|..+..++.+.|++++|+..|+++.+.. |.+..++..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~ 110 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLN 110 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-------CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHH
Confidence 44444555555555555555555555543 3344555555555555555555555555555442 233444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 101 VIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
+..++...|++++|...|+..++.
T Consensus 111 lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 111 RGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhh
Confidence 555555555555555555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=1e-12 Score=108.14 Aligned_cols=155 Identities=8% Similarity=-0.084 Sum_probs=84.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHH----------hcCCHHHHHHHHHHHHHCCCCccHhhHH
Q 035749 65 TIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFC----------YANDSNEAKRLFIEMMDQGVQPNVVTFS 134 (405)
Q Consensus 65 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (405)
.++......+..++|+++++++.+.+ |-+...|+..-..+. ..|.+++|+..++...+..++ +...|.
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~ 111 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWH 111 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHH
Confidence 33333333344578888888887764 334444543332222 223356666666666655332 455555
Q ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHh
Q 035749 135 VIMDELCKNG--KMEEASQLLELMIQIGVRPNAFVYN-TLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYC 211 (405)
Q Consensus 135 ~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (405)
.+..++...+ +++++...+..+.+.. +.+...+. .....+...+.+++|+..++.+...+ +.+..+|..+..++.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 5555544443 3666666666666653 33344433 33445555666666666666666654 445566666666666
Q ss_pred hcCChHHHHHHH
Q 035749 212 KNKEIEGALSLY 223 (405)
Q Consensus 212 ~~~~~~~a~~~~ 223 (405)
+.|++++|...+
T Consensus 190 ~~~~~~~A~~~~ 201 (334)
T d1dcea1 190 QLHPQPDSGPQG 201 (334)
T ss_dssp HHSCCCCSSSCC
T ss_pred HhcCHHHHHHHH
Confidence 666665554433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=1.8e-11 Score=96.70 Aligned_cols=96 Identities=9% Similarity=0.022 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFC 176 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (405)
+|..+..+|.+.|++++|+..|++.++..+. +..+|..+..++...|++++|+..|+++++.. +.+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 4444555555566666666666655554322 45555555555556666666666665555543 334445555555555
Q ss_pred ccCCHHHHHHHHHHHHhc
Q 035749 177 LTGRVNRAKELFVSMESM 194 (405)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~ 194 (405)
..|++++|...++...+.
T Consensus 117 ~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh
Confidence 555555555555555544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.3e-08 Score=75.43 Aligned_cols=123 Identities=14% Similarity=-0.008 Sum_probs=90.0
Q ss_pred HHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 035749 26 INGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGF 105 (405)
Q Consensus 26 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (405)
...+...|++++|++.|+++ .++++.+|..+..++...|++++|++.|++.++.+ |.++..|..+..++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~ 80 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 80 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhc----------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHH
Confidence 56677888888888888764 24667788888888888888999988888888775 55778888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC--------------c-cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 106 CYANDSNEAKRLFIEMMDQGVQ--------------P-NVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.+.|++++|+..|++.+..... + ...++..+..++.+.|++++|.+.+....+.
T Consensus 81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888888888887653111 0 0233445566666677777777776666654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=8.4e-09 Score=69.52 Aligned_cols=95 Identities=22% Similarity=0.159 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 035749 23 STLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVI 102 (405)
Q Consensus 23 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (405)
..-...+...|++++|+..|+++++.+ |.++..|..+..++...|++++|+..++...+.+ |.++..|..+.
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g 78 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLD-------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKA 78 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-------CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHH
Confidence 345666777888888888888887765 5667778888888888888888888888877764 56777788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 035749 103 RGFCYANDSNEAKRLFIEMMDQG 125 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~ 125 (405)
.++...|++++|+..|++.++..
T Consensus 79 ~~~~~~~~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 79 AALEFLNRFEEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 88888888888888888877653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=5.6e-08 Score=77.41 Aligned_cols=61 Identities=11% Similarity=-0.002 Sum_probs=27.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHhhcCChHHHHHHHHHHHh
Q 035749 168 YNTLMDGFCLTGRVNRAKELFVSMESMGCKHNV------FSYSILINGYCKNKEIEGALSLYSEMLS 228 (405)
Q Consensus 168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 228 (405)
+..++..+...|++++|...++++......... ..+...+..+...++++.|...+++..+
T Consensus 161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444555555555555555555555443211100 1122333344445555555555555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.02 E-value=1.2e-06 Score=68.42 Aligned_cols=224 Identities=12% Similarity=0.012 Sum_probs=120.7
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCC
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCK----EGFVDKAKELLLQMKDKNINP 93 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 93 (405)
|+..+..|...+.+.+++++|++.|+++.+.+ +...+..|...|.. ..++..|...+......+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---
Confidence 45567777777778888888888888877644 34556666666665 557777777777777654
Q ss_pred ChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH----cCCCHHHHHHHHHHHHHcCCCCCH
Q 035749 94 DVVTYNSVIRGFCY----ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC----KNGKMEEASQLLELMIQIGVRPNA 165 (405)
Q Consensus 94 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~ 165 (405)
++.....+...+.. ..+.+.|...++.....|.. .....+...+. .......+...+...... .+.
T Consensus 69 ~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~ 142 (265)
T d1ouva_ 69 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDG 142 (265)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCH
T ss_pred ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---ccc
Confidence 34444444444432 34567777777777665432 11222222222 233455566666555443 244
Q ss_pred HHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhh----cCChHHHHHHHHHHHhCCCCCchhh
Q 035749 166 FVYNTLMDGFCL----TGRVNRAKELFVSMESMGCKHNVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPTVVT 237 (405)
Q Consensus 166 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (405)
..+..+...+.. ..+...+...++...+.| +..+...+...|.. ..+++.|+..|.+..+.| ++..
T Consensus 143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a 216 (265)
T d1ouva_ 143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 216 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred chhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHH
Confidence 455555555543 234455555555555433 33444444444433 345555666665555543 2333
Q ss_pred HHHHHHHHHc----cccHHHHHHHHHHHHHcC
Q 035749 238 YNTLFIGLFE----IHQVERAFKLFDEMQRHG 265 (405)
Q Consensus 238 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 265 (405)
+..|...|.. ..+.++|...|++....|
T Consensus 217 ~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 217 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 3444444433 224555555555555444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.00 E-value=2.1e-06 Score=67.05 Aligned_cols=224 Identities=12% Similarity=-0.009 Sum_probs=132.1
Q ss_pred cHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCChhhHH
Q 035749 129 NVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCL----TGRVNRAKELFVSMESMGCKHNVFSYS 204 (405)
Q Consensus 129 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (405)
|+..+..+...+...+++++|+++|++..+.| +...+..|..+|.. ..++..+...++.....+ ++....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34556666777777888888888888887765 45555566666655 456777777777776654 333344
Q ss_pred HHHHHHhh----cCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHH----ccccHHHHHHHHHHHHHcCCCccHHHHHHH
Q 035749 205 ILINGYCK----NKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLF----EIHQVERAFKLFDEMQRHGVAADTWAYRTF 276 (405)
Q Consensus 205 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 276 (405)
.+...+.. ..+.+.|...++.....|.. .....+...+. .......+...+......+ +...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 44444332 34667777777777765422 22222322222 2334566666666655532 44455555
Q ss_pred HHHHhc----CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----cCCHHHHHHHHhhccCCCcCccHHHHHHHHH
Q 035749 277 IDGLCK----NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCK----SGRLKIAWELFHSLPRGVLIADVVTYNIMIH 348 (405)
Q Consensus 277 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 348 (405)
...+.. ..+...+...++...+.+ +..+...+...|.. ..++++|...|++..+.| ++..+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 555543 345666666666666543 45555556655554 456777777777766653 3445555666
Q ss_pred HHHc----CCCHHHHHHHHHHHHhCC
Q 035749 349 ALCA----DGKMDKAHDLFLDMEAKG 370 (405)
Q Consensus 349 ~~~~----~g~~~~A~~~~~~~~~~~ 370 (405)
.|.. .+++++|.+.|++..+.|
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 5554 336667777777776665
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=4.8e-08 Score=72.22 Aligned_cols=128 Identities=11% Similarity=0.013 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (405)
.|+. ...+...|+++.|++.|.++. +|++.+|..+..++...|++++|++.|++.++.++. +...|..+..++.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 81 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHH
Confidence 3443 556778899999999887642 567888889999999999999999999999887544 6778888899999
Q ss_pred cCCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 035749 142 KNGKMEEASQLLELMIQIGVR--------------P-NAFVYNTLMDGFCLTGRVNRAKELFVSMESMG 195 (405)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (405)
+.|++++|...|++.+..... . ...++..+..++...|++++|.+.+.......
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999888754210 0 12445566667777788888887777776653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=3.5e-08 Score=66.34 Aligned_cols=94 Identities=15% Similarity=0.034 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcC
Q 035749 64 TTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKN 143 (405)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (405)
..-...+.+.|++++|+..|++.++.. |.+...|..+..++...|++++|+..+...++.++. +...|..+..++...
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHc
Confidence 344556666777777777777776654 556666777777777777777777777777765433 566666777777777
Q ss_pred CCHHHHHHHHHHHHHc
Q 035749 144 GKMEEASQLLELMIQI 159 (405)
Q Consensus 144 ~~~~~a~~~~~~~~~~ 159 (405)
|++++|+..+++..+.
T Consensus 85 ~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKH 100 (117)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHh
Confidence 7777777777777665
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1.8e-08 Score=72.20 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
+......+.+.|++++|+..|+++++.+ |.+...|..+..++...|++++|+..|++.++.+ |.+..+|..+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~ 84 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRR 84 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-------hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHH
Confidence 3444556667777777777777777664 4556677777777777777777777777776654 4456667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
+.++...|++++|...+++....
T Consensus 85 g~~~~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 85 AASNMALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777777665
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=7.4e-08 Score=76.67 Aligned_cols=56 Identities=11% Similarity=-0.005 Sum_probs=29.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 035749 137 MDELCKNGKMEEASQLLELMIQI----GVRP-NAFVYNTLMDGFCLTGRVNRAKELFVSME 192 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 192 (405)
...|...|++++|...|.++.+. +-++ ...+|..+..+|.+.|++++|...+++..
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~ 104 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence 44555566666666666655442 1011 12345555556666666666666555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=5.6e-08 Score=69.58 Aligned_cols=107 Identities=10% Similarity=0.013 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHH
Q 035749 62 IYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELC 141 (405)
Q Consensus 62 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (405)
.+......+.+.|++++|+..|++..+.+ |.+...|..+..++...|++++|...|++.++..+. +..+|..++.++.
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHH
Confidence 44555667778888888888888887765 557777888888888888888888888888776433 6677777888888
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 035749 142 KNGKMEEASQLLELMIQIGVRPNAFVYNTL 171 (405)
Q Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 171 (405)
..|++++|...+++..... +-+...+..+
T Consensus 90 ~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l 118 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVK-PHDKDAKMKY 118 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 8888888888888887764 3344444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=1.5e-08 Score=76.10 Aligned_cols=99 Identities=15% Similarity=-0.041 Sum_probs=73.5
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChH
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVV 96 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (405)
|+...+......+.+.|++++|+..|+++++.+ |.++.+|..++.+|.+.|++++|+..|++..+.. |-++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~ 73 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVK 73 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHH
Confidence 566667777777778888888888888777765 4567777777777888888888888887777653 44566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
+|..+..++...|++++|+..|++.++
T Consensus 74 a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 74 AHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777777777777664
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.84 E-value=1.9e-08 Score=67.12 Aligned_cols=92 Identities=9% Similarity=-0.028 Sum_probs=71.1
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHH
Q 035749 23 STLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVI 102 (405)
Q Consensus 23 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 102 (405)
..+...+.+.|++++|+..|+++++.. |.++.+|..+..++.+.|++++|+..|++..+.. |.+..++..+.
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la 91 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 91 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-------cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHH
Confidence 445667778888888888888888765 4567788888888888888888888888877764 55677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 035749 103 RGFCYANDSNEAKRLFIEMM 122 (405)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~~~ 122 (405)
.+|...|++++|++.+++.+
T Consensus 92 ~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 92 VSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHh
Confidence 88888888888888877653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.81 E-value=5.3e-08 Score=72.92 Aligned_cols=99 Identities=12% Similarity=-0.061 Sum_probs=84.0
Q ss_pred CchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHH
Q 035749 233 PTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLI 312 (405)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 312 (405)
|+...+...+..+.+.|++++|+..|.+++... |.++..+..+..+|.+.|++++|+..++.+.+.. |-+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 677777788888999999999999999888775 6678888888899999999999999999988765 55677888899
Q ss_pred HHHHhcCCHHHHHHHHhhccC
Q 035749 313 DGLCKSGRLKIAWELFHSLPR 333 (405)
Q Consensus 313 ~~~~~~~~~~~a~~~~~~~~~ 333 (405)
.+|...|++++|...|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999988765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=4.4e-08 Score=66.05 Aligned_cols=99 Identities=8% Similarity=-0.012 Sum_probs=70.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC---HHHHHHHHhhccCCCcCcc-HHHHHHHHHH
Q 035749 274 RTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGR---LKIAWELFHSLPRGVLIAD-VVTYNIMIHA 349 (405)
Q Consensus 274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 349 (405)
..++..+...+++++|.+.|++....+ |.++.++..++.++.+.++ +++|+.+|+++......|+ ..+|..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666777778888888888887776 6677777788887776554 4468888888776543333 3467777888
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCH
Q 035749 350 LCADGKMDKAHDLFLDMEAKGVAPDC 375 (405)
Q Consensus 350 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 375 (405)
|.+.|++++|++.|+++++. .|+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~ 105 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQN 105 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCC
Confidence 88888888888888888874 4543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.69 E-value=1.3e-07 Score=62.83 Aligned_cols=87 Identities=11% Similarity=0.008 Sum_probs=39.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh
Q 035749 137 MDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (405)
...+.+.|++++|+..++++++.. +.+...|..+..++.+.|++++|+..++++.+.. |.+..++..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 334444444444444444444442 2234444444444444444444444444444443 33344444444444444444
Q ss_pred HHHHHHHHH
Q 035749 217 EGALSLYSE 225 (405)
Q Consensus 217 ~~a~~~~~~ 225 (405)
++|++.+++
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=2.5e-07 Score=62.26 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcc-HhhHHHHHHH
Q 035749 64 TTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYAND---SNEAKRLFIEMMDQGVQPN-VVTFSVIMDE 139 (405)
Q Consensus 64 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 139 (405)
..++..+...+++++|.+.|++....+ |.++.++..+..++.+.++ +++|+.+|+++...+..|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666677778888888888877765 5577777777777776544 3457777777776544333 2356667777
Q ss_pred HHcCCCHHHHHHHHHHHHHcC
Q 035749 140 LCKNGKMEEASQLLELMIQIG 160 (405)
Q Consensus 140 ~~~~~~~~~a~~~~~~~~~~~ 160 (405)
|.+.|++++|.+.|+++++..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHhC
Confidence 788888888888888887763
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.63 E-value=5.5e-05 Score=60.13 Aligned_cols=145 Identities=14% Similarity=0.120 Sum_probs=94.0
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChH
Q 035749 17 PNVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVV 96 (405)
Q Consensus 17 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 96 (405)
||..--..++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------------~~rl~~~~v~l~~~~~avd~~~k~~------~~~ 70 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------------FGRLASTLVHLGEYQAAVDGARKAN------STR 70 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------------HHHHHHHHHTTTCHHHHHHHHHHHT------CHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------------HHHHHHHHHhhccHHHHHHHHHHcC------CHH
Confidence 5555566778888899999999999986532 6677888889999999988876432 677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 035749 97 TYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFC 176 (405)
Q Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (405)
+|..+...+.+.....-+ .+.......+......++..|-..|.+++...+++...... +.+...++.++..|+
T Consensus 71 ~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lya 144 (336)
T d1b89a_ 71 TWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 144 (336)
T ss_dssp HHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHH
Confidence 898889888887766543 22233333456666778889999999999999999876543 567778888888888
Q ss_pred ccCCHHHHHHHHH
Q 035749 177 LTGRVNRAKELFV 189 (405)
Q Consensus 177 ~~~~~~~a~~~~~ 189 (405)
+.+ .++..+.++
T Consensus 145 k~~-~~kl~e~l~ 156 (336)
T d1b89a_ 145 KFK-PQKMREHLE 156 (336)
T ss_dssp TTC-HHHHHHHHH
T ss_pred HhC-hHHHHHHHH
Confidence 765 344444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.1e-06 Score=63.31 Aligned_cols=104 Identities=10% Similarity=-0.068 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccc--------ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCK--------PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNI 91 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 91 (405)
..+......+.+.|++++|+..|+++++..+....... ....+|..+..+|.+.|++++|+..++..+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~- 92 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 92 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-
Confidence 34566778899999999999999999876432111000 001233344444444555555555554444432
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 92 NPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
|.++.++..+..++...|++++|+..|++.++.
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 334444444444455555555555555544443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=9.5e-08 Score=82.16 Aligned_cols=224 Identities=9% Similarity=-0.017 Sum_probs=107.8
Q ss_pred hHhHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCccccccc-HHHHHHHHHHHHhcCChHHH
Q 035749 2 EAAALFTKLKAFGCEPN-VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPD-AVIYTTIIDGLCKEGFVDKA 79 (405)
Q Consensus 2 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 79 (405)
+|.+.|++..+. +|+ +.++..+..++...|++++| |++++..+ |+ ...++.. ..+. ...+..+
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--------p~~a~~~~~e-~~Lw-~~~y~~~ 68 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--------LEYALDKKVE-QDLW-NHAFKNQ 68 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--------HHHHHHHTHH-HHHH-HHHTHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--------hhhHHHHhHH-HHHH-HHHHHHH
Confidence 688888888775 344 45666777778778887765 77776543 22 1122111 1111 1124455
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 80 KELLLQMKDKNINPDVVTYNSVIRG--FCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMI 157 (405)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 157 (405)
.+.++...+....++..-....... ....+.++.++..+....+.. +++...+..+...+.+.|+.+.|...+....
T Consensus 69 ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 147 (497)
T d1ya0a1 69 ITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSC 147 (497)
T ss_dssp HHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHH
T ss_pred HHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHh
Confidence 6666665544323332222211111 112233444444443333221 2244455566666667777777776666554
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCChHHHHHHHHHHHhCCCCCchhh
Q 035749 158 QIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPTVVT 237 (405)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (405)
... ...++..+...+...|++++|...|+++.+.. |.+...|+.+...+...|+..+|+..|.+.+... +|-..+
T Consensus 148 ~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a 222 (497)
T d1ya0a1 148 SYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAA 222 (497)
T ss_dssp HHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHH
T ss_pred CCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHH
Confidence 432 12455666777777777777777777777764 4566677777777777777777777777776653 344555
Q ss_pred HHHHHHHHH
Q 035749 238 YNTLFIGLF 246 (405)
Q Consensus 238 ~~~l~~~~~ 246 (405)
+..+...+.
T Consensus 223 ~~nL~~~~~ 231 (497)
T d1ya0a1 223 STNLQKALS 231 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=3e-06 Score=60.92 Aligned_cols=73 Identities=10% Similarity=-0.032 Sum_probs=44.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 035749 132 TFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSIL 206 (405)
Q Consensus 132 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 206 (405)
+|+.+..+|.+.|++++|+..++..++.. |.++.++..+..++...|++++|...|+.+.+.. |.+..+...+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l 136 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQL 136 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34555666666667777776666666664 4456666666666666666666666666666653 2344443333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=9.3e-08 Score=82.23 Aligned_cols=227 Identities=8% Similarity=-0.096 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHH
Q 035749 113 EAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNA-FVYNTLMDGFCLTGRVNRAKELFVSM 191 (405)
Q Consensus 113 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (405)
+|.+.|++..+.... ....+..+..++...+++++| +++++..+ |+. ..++...... ...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw--~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW--NHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH--HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH--HHHHHHHHHHHHHh
Confidence 678888888764221 345566677778888888765 67776552 221 1111111110 11245566677766
Q ss_pred HhcCCCCChhhHHHHHH--HHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHHHHcCCCcc
Q 035749 192 ESMGCKHNVFSYSILIN--GYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEMQRHGVAAD 269 (405)
Q Consensus 192 ~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 269 (405)
.+....++......... .....+.++.++..+....... +++...+..+...+.+.|+.+.|...+....... .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence 65432333322222211 2222344555555554443332 3345567777888889999999998887766532 2
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHH
Q 035749 270 TWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHA 349 (405)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (405)
..++..+...+...|++++|...|+++.... |.+...|+.++..+...|+..+|...|.+..... +|-..++..|...
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 3567778889999999999999999999886 6778899999999999999999999999988763 4677888888877
Q ss_pred HHcC
Q 035749 350 LCAD 353 (405)
Q Consensus 350 ~~~~ 353 (405)
+.+.
T Consensus 230 ~~~~ 233 (497)
T d1ya0a1 230 LSKA 233 (497)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1e-06 Score=60.09 Aligned_cols=96 Identities=11% Similarity=0.135 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC------
Q 035749 21 TYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPD------ 94 (405)
Q Consensus 21 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------ 94 (405)
.+..+...+.+.|++++|+..|+++++.+ |.+..++..+..+|.+.|++++|++.++++++.. +.+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~ 77 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQ 77 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHH
Confidence 45567778888888888888888888875 5567788888888888888888888888876542 111
Q ss_pred -hHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 95 -VVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 95 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
..+|..+...+...+++++|+..|++.+..
T Consensus 78 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 234555666667777788888877776654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.4e-06 Score=58.09 Aligned_cols=98 Identities=12% Similarity=0.132 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-c-----HhhHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQP-N-----VVTFS 134 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-----~~~~~ 134 (405)
..+..+...+.+.|++++|+..|++.++.+ |.+..++..+..+|.+.|++++|+..++++++..... . ..+|.
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345667777888888888888888888774 5577788888888888888888888888877542110 0 13455
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 135 VIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.+...+...+++++|+..|++....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 5666666777777777777776654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.47 E-value=6.2e-06 Score=58.03 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHH
Q 035749 20 ITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYN 99 (405)
Q Consensus 20 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 99 (405)
..+..-+..+.+.|++.+|+..|.+++...+.... .++..... .... ....+|.
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~--~~~~~~~~--------------------~~~~----~~~~~~~ 71 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE--WDDQILLD--------------------KKKN----IEISCNL 71 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT--CCCHHHHH--------------------HHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh--hhhHHHHH--------------------hhhh----HHHHHHh
Confidence 34566778889999999999999999875422110 01111000 0000 0123444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 100 SVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.+..+|.+.|++++|+..++..+...+ .+..+|..+..++...|++++|...|++..+.
T Consensus 72 Nla~~~~~l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 72 NLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555555555555432 24555555555555555555555555555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.45 E-value=3.4e-06 Score=60.64 Aligned_cols=127 Identities=8% Similarity=-0.037 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
+......+...|++++|+..|.++++.. +.... ........ .. -+.....+..+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~--------~~~~~----------~~~~~~~~-------~~-~~~~~~~~~nl 83 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--------EGSRA----------AAEDADGA-------KL-QPVALSCVLNI 83 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HHHHH----------HSCHHHHG-------GG-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh--------hhhhh----------hhhhHHHH-------Hh-ChhhHHHHHHH
Confidence 4556677889999999999999886521 10000 00000000 00 01134445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFC 176 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (405)
..++.+.|++++|+..+++.++..+. +..+|..+..++...|++++|+..|+++++.. +.+..+...+..+..
T Consensus 84 a~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 84 GACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 66666666666666666666655332 55566666666666666666666666666653 334444444444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.40 E-value=7e-06 Score=58.85 Aligned_cols=104 Identities=10% Similarity=-0.075 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccc---------cHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 035749 19 VITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKP---------DAVIYTTIIDGLCKEGFVDKAKELLLQMKDK 89 (405)
Q Consensus 19 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 89 (405)
...+...+..+.+.|++.+|+..|++++..-+.... ..+ ...+|..+..++.+.|++++|+..++...+.
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l 93 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYG-LSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 93 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc-cchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence 345677888899999999999999998753211000 000 1123344444555555555555555555544
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 035749 90 NINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQ 124 (405)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (405)
+ |.+..+|..+..++...|++++|...|.++++.
T Consensus 94 ~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 94 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred c-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 344555555555555555555555555555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.40 E-value=8e-06 Score=57.44 Aligned_cols=122 Identities=13% Similarity=-0.012 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHH
Q 035749 61 VIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDEL 140 (405)
Q Consensus 61 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (405)
..+..-+..+.+.|++.+|+..|++..+.- +.... .. +.... .... .....+|..+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~~-----------~~-~~~~~--~~~~----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEE-----------WD-DQILL--DKKK----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTT-----------CC-CHHHH--HHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchhh-----------hh-hHHHH--Hhhh----hHHHHHHhhHHHHH
Confidence 345556666777777777777777766531 10000 00 00000 0000 01223556677777
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHH
Q 035749 141 CKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYS 204 (405)
Q Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (405)
.+.|++++|+..++.+++.+ |.+..+|..++.++...|++++|...|+...+.. |.+..+..
T Consensus 78 ~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~ 139 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRN 139 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 77788888888887777765 5567777777777888888888888887777764 33444433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.38 E-value=0.00027 Score=56.03 Aligned_cols=212 Identities=14% Similarity=0.103 Sum_probs=124.3
Q ss_pred cccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHH
Q 035749 57 KPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVI 136 (405)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (405)
.|+..-...++..|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+.+.+.- +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 4566666778888999999999999998654 36677888899999999988877542 56788888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh
Q 035749 137 MDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (405)
Q Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (405)
...+........+ .+.......++.....++..|...|.+++...+++...... +.+...++.++..|++.+ .
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-h
Confidence 8888887766543 22233334566666788899999999999999999886543 567778888999888864 3
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHHHHHHHHH----------HHcCCCccHHHHHHHHHHHhcCCCh
Q 035749 217 EGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERAFKLFDEM----------QRHGVAADTWAYRTFIDGLCKNGYI 286 (405)
Q Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~ 286 (405)
++..+.+..... . .....++..|.+.+-++++.-++..+ ..+ +++..-...++..+.+.++.
T Consensus 149 ~kl~e~l~~~s~---~---y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~--~~~~~~~~~f~e~~~k~~N~ 220 (336)
T d1b89a_ 149 QKMREHLELFWS---R---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH--PTDAWKEGQFKDIITKVANV 220 (336)
T ss_dssp HHHHHHHHHHST---T---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS--TTTTCCHHHHHHHHHHCSST
T ss_pred HHHHHHHHhccc---c---CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc--chhhhhHHHHHHHHHccCCh
Confidence 444444433211 1 11223334444444444444444332 222 33333344455556666666
Q ss_pred HHHHHHHHHHHh
Q 035749 287 VEALELFRTLRI 298 (405)
Q Consensus 287 ~~a~~~~~~~~~ 298 (405)
+...++......
T Consensus 221 e~~~~~i~~yL~ 232 (336)
T d1b89a_ 221 ELYYRAIQFYLE 232 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 655555555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.37 E-value=1.5e-05 Score=57.47 Aligned_cols=125 Identities=6% Similarity=-0.026 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHH
Q 035749 22 YSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSV 101 (405)
Q Consensus 22 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 101 (405)
.......+...|++++|.+.|..++...... +.++ .....-+...-..+... ....+..+
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~---~l~~-------------~~~~~w~~~~r~~l~~~----~~~a~~~l 73 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGP---VLDD-------------LRDFQFVEPFATALVED----KVLAHTAK 73 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS---TTGG-------------GTTSTTHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCccc---cccc-------------CcchHHHHHHHHHHHHH----HHHHHHHH
Confidence 4455577889999999999999999864211 0010 00000111111111111 23455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 035749 102 IRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQ-----IGVRPNAFV 167 (405)
Q Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 167 (405)
+..+...|++++|+..+++++...+ -+...|..++.++...|+..+|++.|+++.+ .|+.|...+
T Consensus 74 a~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 74 AEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 6666667777777777766666533 2566666667777777777777766666533 466666544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.37 E-value=5.3e-06 Score=59.60 Aligned_cols=132 Identities=11% Similarity=-0.031 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc
Q 035749 63 YTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK 142 (405)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (405)
+......+...|++++|+..|+++.+.. ............. .. -+.....+..+..++.+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~~-------~~-~~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADGA-------KL-QPVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHHG-------GG-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHHH-------Hh-ChhhHHHHHHHHHHHHh
Confidence 4455666778888999988888765420 0000001111110 00 01245667788899999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHhhcCCh
Q 035749 143 NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMGCKHNVFSYSILINGYCKNKEI 216 (405)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (405)
.|++++|+..++++++.. +.+...|..+..++...|++++|+..|+.+.+.. |.+......+..+..+....
T Consensus 90 ~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999986 6788899999999999999999999999999985 45666666666655443333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.33 E-value=1.1e-05 Score=57.76 Aligned_cols=61 Identities=13% Similarity=0.024 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 133 FSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 133 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
|+.+..+|.+.|++++|+..++.+++.. +.+...|..+..++...|++++|...|+.+.+.
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555556666666666666665553 445555555666666666666666666665554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.28 E-value=1e-06 Score=68.11 Aligned_cols=124 Identities=18% Similarity=0.137 Sum_probs=79.2
Q ss_pred HHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 035749 28 GLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY 107 (405)
Q Consensus 28 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 107 (405)
-..+.|++++|+..+++.++.. |.+...+..++..++..|++++|...++...+.. |.+...+..+...+..
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~-------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a 76 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKAS-------PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKA 76 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 3557789999999999988875 6778889999999999999999999998888763 3344455444444433
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 108 ANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
.+..+++..........+.+++...+...+..+...|+.++|...++++.+.
T Consensus 77 ~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3332222211111111112223334444555667778888888888777665
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.23 E-value=4.9e-06 Score=64.23 Aligned_cols=123 Identities=15% Similarity=0.043 Sum_probs=84.1
Q ss_pred HHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHH
Q 035749 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIA 324 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 324 (405)
..+.|++++|+..+++.++.. |.+...+..++..++..|++++|...++...+.. |.+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 456788888888888888875 6678888888888888888888888888888764 34455555555555555555544
Q ss_pred HHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 035749 325 WELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAK 369 (405)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 369 (405)
..-.......+.+++...+...+..+...|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 333332222222233444455566677889999999999888775
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.22 E-value=5.2e-06 Score=57.71 Aligned_cols=73 Identities=11% Similarity=-0.135 Sum_probs=56.2
Q ss_pred HHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCCCChHHH
Q 035749 29 LCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKE----------GFVDKAKELLLQMKDKNINPDVVTY 98 (405)
Q Consensus 29 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (405)
|-+.+.+++|+..|+.+++.+ |.++.++..+..++... +.+++|+..|++..+.+ |.+..+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-------P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~ 78 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAV 78 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-------CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHH
Confidence 345667999999999999986 67888999999888754 44567888888887764 5567778
Q ss_pred HHHHHHHHhcC
Q 035749 99 NSVIRGFCYAN 109 (405)
Q Consensus 99 ~~l~~~~~~~~ 109 (405)
..+..+|...|
T Consensus 79 ~~lG~~y~~~g 89 (145)
T d1zu2a1 79 WCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHcc
Confidence 77777776554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=8.4e-06 Score=51.85 Aligned_cols=84 Identities=10% Similarity=-0.018 Sum_probs=64.9
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHH
Q 035749 18 NVITYSTLINGLCRTGHTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVT 97 (405)
Q Consensus 18 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (405)
++..+..+...+.+.|++++|+..|+++++..+......+....++..+..++.+.|++++|+..++++.+.. |-+..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence 5556678899999999999999999999876432221122346789999999999999999999999998874 445666
Q ss_pred HHHHH
Q 035749 98 YNSVI 102 (405)
Q Consensus 98 ~~~l~ 102 (405)
++.+.
T Consensus 83 ~~Nl~ 87 (95)
T d1tjca_ 83 NGNLK 87 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.14 E-value=3.6e-06 Score=58.58 Aligned_cols=126 Identities=15% Similarity=0.118 Sum_probs=63.2
Q ss_pred HHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcC----------CChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 035749 245 LFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKN----------GYIVEALELFRTLRILKCELDIRSYSCLIDG 314 (405)
Q Consensus 245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 314 (405)
|.+.+.+++|...++..++.. |.+...+..+..++... +.+++|+..++++.+.. |.+..+|..++.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 344555666666666666654 44555555555555432 22344555555555443 3344445555444
Q ss_pred HHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHH
Q 035749 315 LCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKV 394 (405)
Q Consensus 315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 394 (405)
|...|++. ++... ..+++++|.+.|+++++. .|+...+...+..+ .+|
T Consensus 85 y~~~g~~~---------------~~~~~---------~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka 132 (145)
T d1zu2a1 85 YTSFAFLT---------------PDETE---------AKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKA 132 (145)
T ss_dssp HHHHHHHC---------------CCHHH---------HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTH
T ss_pred HHHcccch---------------hhHHH---------HHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHH
Confidence 44333210 00000 012357788888888874 56555554433333 345
Q ss_pred HHHHHHhhhc
Q 035749 395 VELLHRMDER 404 (405)
Q Consensus 395 ~~~~~~~~~~ 404 (405)
.+++.+..++
T Consensus 133 ~~~~~e~~k~ 142 (145)
T d1zu2a1 133 PQLHAEAYKQ 142 (145)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.13 E-value=0.00016 Score=51.95 Aligned_cols=125 Identities=11% Similarity=0.079 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHc
Q 035749 63 YTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCK 142 (405)
Q Consensus 63 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (405)
...........|++++|.+.|.+..... +-+.... ...+.+ +...-..+... ....+..++..+..
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~-rG~~l~~-------~~~~~w--~~~~r~~l~~~----~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREW-RGPVLDD-------LRDFQF--VEPFATALVED----KVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-CSSTTGG-------GTTSTT--HHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-ccccccc-------CcchHH--HHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3444566777888888888888887642 1111000 000111 11111111111 23456667778888
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----cCCCCChhh
Q 035749 143 NGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMES-----MGCKHNVFS 202 (405)
Q Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 202 (405)
.|++++|+..++++++.. +.+...|..++.++...|+..+|++.|+++.. .|+.|...+
T Consensus 80 ~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 888888888888888775 66777888888888888888888888887633 466666544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.85 E-value=0.00019 Score=50.35 Aligned_cols=104 Identities=14% Similarity=0.013 Sum_probs=67.5
Q ss_pred hHHHHH--HHHHHhcCchHHHHHHHHHHHcCCCCCccccc-----ccHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---
Q 035749 20 ITYSTL--INGLCRTGHTIVALNLFEEMINGNGEFGVVCK-----PDAVIYTTIIDGLCKEGFVDKAKELLLQMKDK--- 89 (405)
Q Consensus 20 ~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 89 (405)
.+|..+ ...+.+.|++++|+..|+++++..+..+.... .....|+.+..+|.+.|++++|+..+++..+.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 456655 56677889999999999999976533211100 12457888888888888888888888876542
Q ss_pred --CCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 035749 90 --NINPD-----VVTYNSVIRGFCYANDSNEAKRLFIEMMD 123 (405)
Q Consensus 90 --~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (405)
...++ ...+..+..+|...|++++|+..|++.++
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 12345566666666777766666666553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.77 E-value=0.00016 Score=50.75 Aligned_cols=92 Identities=15% Similarity=-0.042 Sum_probs=50.6
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcCCC-c----------cHHHHHHHHHHHHhcCCHHHHHHHHhhccCCC-----cCc--
Q 035749 277 IDGLCKNGYIVEALELFRTLRILKCE-L----------DIRSYSCLIDGLCKSGRLKIAWELFHSLPRGV-----LIA-- 338 (405)
Q Consensus 277 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-- 338 (405)
...+...|++++|+..|++....... | ....|+.++.+|...|++++|...+++..... ..+
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34455567777777777776553211 1 12445666666666666666666666654210 011
Q ss_pred ---cHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 035749 339 ---DVVTYNIMIHALCADGKMDKAHDLFLDMEA 368 (405)
Q Consensus 339 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 368 (405)
...+++.+..+|...|++++|+..|+++++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 122345556666666666666666666654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00069 Score=42.58 Aligned_cols=60 Identities=10% Similarity=0.027 Sum_probs=27.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcC-----CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 035749 135 VIMDELCKNGKMEEASQLLELMIQIG-----VRP-NAFVYNTLMDGFCLTGRVNRAKELFVSMESM 194 (405)
Q Consensus 135 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 194 (405)
.+...+.+.|++++|...|++.++.. ..+ ...++..+..++.+.|++++|+..++++.+.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34444444555555555554443321 001 1234444555555555555555555555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.43 E-value=0.0037 Score=42.03 Aligned_cols=77 Identities=9% Similarity=-0.011 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh----cC
Q 035749 34 HTIVALNLFEEMINGNGEFGVVCKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCY----AN 109 (405)
Q Consensus 34 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 109 (405)
|+++|+.+|+++.+.+ ++.....|.. ....+.++|++++++..+.| ++.....|...|.. ..
T Consensus 8 d~~~A~~~~~kaa~~g---------~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~ 73 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---------EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKK 73 (133)
T ss_dssp HHHHHHHHHHHHHHTT---------CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred CHHHHHHHHHHHHHCC---------Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccch
Confidence 5566666666665544 1111222221 22344555555555555544 33444444444432 23
Q ss_pred CHHHHHHHHHHHHHC
Q 035749 110 DSNEAKRLFIEMMDQ 124 (405)
Q Consensus 110 ~~~~a~~~~~~~~~~ 124 (405)
+.++|.++|++..+.
T Consensus 74 d~~~A~~~~~~aa~~ 88 (133)
T d1klxa_ 74 DLRKAAQYYSKACGL 88 (133)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhhhhcc
Confidence 445555555555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.31 E-value=0.0075 Score=40.42 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=8.9
Q ss_pred ChHHHHHHHHHHHhCC
Q 035749 75 FVDKAKELLLQMKDKN 90 (405)
Q Consensus 75 ~~~~a~~~~~~~~~~~ 90 (405)
++++|+.+|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4555666666555554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.12 Score=42.78 Aligned_cols=182 Identities=12% Similarity=-0.049 Sum_probs=112.8
Q ss_pred CChHHHHHHHHHHHhCCCCCchhhHHH----HHHHHHccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHH
Q 035749 214 KEIEGALSLYSEMLSKGIKPTVVTYNT----LFIGLFEIHQVERAFKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEA 289 (405)
Q Consensus 214 ~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 289 (405)
.+.+.+...+......... +...... +.......+..+.+...+......+ .+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 4677777777776554211 2221211 2222234455677777776665543 3444444455555667888888
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhcCCHHHHHHHHhhccCC------------CcCc-----------cHH----H
Q 035749 290 LELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRG------------VLIA-----------DVV----T 342 (405)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~-----------~~~----~ 342 (405)
...+..+.... ........-+++++...|+.+.|...|..+... |.++ ... .
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 383 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP 383 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcCh
Confidence 88887765322 233455677788888888888888888764321 1000 000 0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 035749 343 YNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMD 402 (405)
Q Consensus 343 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 402 (405)
-..-+..+...|....|...+..+... .+......+.....+.|.++.|+....+..
T Consensus 384 ~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 384 EMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 112355677899999999999988764 255566777888889999999998877653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.22 E-value=0.034 Score=35.96 Aligned_cols=73 Identities=11% Similarity=0.007 Sum_probs=46.0
Q ss_pred CccHHHHHHHHHHHHhcCC---HHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 035749 302 ELDIRSYSCLIDGLCKSGR---LKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCV 376 (405)
Q Consensus 302 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 376 (405)
.++..+-...+.++.++.+ .++++.+|+++.+.+..-....+-.|..+|.+.|++++|.+.++.+++. .|+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~ 107 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 107 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence 3556666666777766544 4567777777665321112345666777777888888888888887774 45433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.02 E-value=0.087 Score=33.78 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcC
Q 035749 339 DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN 405 (405)
Q Consensus 339 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 405 (405)
+...++..+.....+|+-+.-.++++.+.+. -+|++.....+..+|-+-|...++-+++.+.-++|
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3455666677778888888888888886664 46778888888888888888888888888877765
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.97 E-value=0.093 Score=33.66 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 035749 131 VTFSVIMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSMESMG 195 (405)
Q Consensus 131 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 195 (405)
..+...+.....+|+-++-.++++.+.+.+ ++++.....+..+|.+.|...++.+++.++-+.|
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 334444555555566666666655554433 5555555555666666666666666666555554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.96 E-value=0.24 Score=31.88 Aligned_cols=67 Identities=7% Similarity=0.117 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCccHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 035749 93 PDVVTYNSVIRGFCYAN---DSNEAKRLFIEMMDQGVQPNVVTFSVIMDELCKNGKMEEASQLLELMIQI 159 (405)
Q Consensus 93 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 159 (405)
+++.+--....++++.. ++++++.+++++.+.+..-....+..+.-+|.+.|++++|.+.++.+++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 44555555555555443 34566677776665432212345555666677777777777777777765
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=1 Score=36.95 Aligned_cols=182 Identities=9% Similarity=-0.047 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHH----HHHHHhhcCChHHHHHHHHHHHhCCCCCchhhHHHHHHHHHccccHHHH
Q 035749 179 GRVNRAKELFVSMESMGCKHNVFSYSI----LINGYCKNKEIEGALSLYSEMLSKGIKPTVVTYNTLFIGLFEIHQVERA 254 (405)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 254 (405)
.+.+.+...+....... ..+...+.. +.......+..+.+...+......+ .+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 45666666666665432 122222211 2222233455566666666655543 2333333344445556777777
Q ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHhcCCChHHHHHHHHHHHhc------------CCCc-----------c----HHH
Q 035749 255 FKLFDEMQRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRIL------------KCEL-----------D----IRS 307 (405)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~-----------~----~~~ 307 (405)
...+..+... .........-+..++...|+.+.|...|..+... |.++ . ...
T Consensus 305 ~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 383 (450)
T d1qsaa1 305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP 383 (450)
T ss_dssp HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred HHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcCh
Confidence 7777665432 1223444455667777777777777777765321 1110 0 001
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 035749 308 YSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDME 367 (405)
Q Consensus 308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 367 (405)
-...+..+...|....|...|..+... . +......+.....+.|.++.|+....+..
T Consensus 384 ~~~ra~~L~~~g~~~~A~~e~~~l~~~-~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 384 EMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhC-C--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 123455677889999999999887764 2 45566677888889999999998877664
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| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.58 E-value=0.59 Score=28.25 Aligned_cols=29 Identities=3% Similarity=-0.002 Sum_probs=11.3
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHh
Q 035749 301 CELDIRSYSCLIDGLCKSGRLKIAWELFH 329 (405)
Q Consensus 301 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 329 (405)
..|++.+..+.+++|.+.+++.-|.++|+
T Consensus 37 lVPeP~Ii~aALrAcRRvND~alAVR~lE 65 (105)
T d1v54e_ 37 LVPEPKIIDAALRACRRLNDFASAVRILE 65 (105)
T ss_dssp BCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333333333333333333333333333
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| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.09 E-value=0.69 Score=27.94 Aligned_cols=63 Identities=10% Similarity=0.022 Sum_probs=49.7
Q ss_pred CHHHHHHHHhhccCCCcCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 035749 320 RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLML 383 (405)
Q Consensus 320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 383 (405)
+.=++.+-++.+......|++....+.+++|.+.+++..|+++++-.+.+ ..++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 45567777778877788899999999999999999999999999988866 3334556666543
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| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.56 E-value=2.3 Score=28.22 Aligned_cols=126 Identities=11% Similarity=0.070 Sum_probs=76.1
Q ss_pred ccccHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHhhHHH
Q 035749 56 CKPDAVIYTTIIDGLCKEGFVDKAKELLLQMKDKNINPDVVTYNSVIRGFCYANDSNEAKRLFIEMMDQGVQPNVVTFSV 135 (405)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (405)
.+-....|..-...+...|++.+|-.+--...+ |+-.++.|.+.+-..-...|...--+.+|..+.+.|. .|..--..
T Consensus 27 LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~-giLRt~~Ti~rFk~~~~~pGq~spLL~YF~~Ll~~~~-LN~~ESlE 104 (157)
T d1bpoa1 27 LAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQ-LNKYESLE 104 (157)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSC-CCHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc-ccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcCC-CchHHhHH
Confidence 455566777777888888888888877765543 3445666666555444445666666777777776653 35554556
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 035749 136 IMDELCKNGKMEEASQLLELMIQIGVRPNAFVYNTLMDGFCLTGRVNRAKELFVSM 191 (405)
Q Consensus 136 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 191 (405)
+++.....|+.+-..+++.+ ..+..+...-. ++.. .+..-|..+|.++
T Consensus 105 l~r~vL~q~r~~lve~Wl~e---~KL~~SEeLGD-lv~~----~d~~lAl~IY~ka 152 (157)
T d1bpoa1 105 LCRPVLQQGRKQLLEKWLKE---DKLECSEELGD-LVKS----VDPTLALSVYLRA 152 (157)
T ss_dssp HHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHH-HHHH----HCSHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHc---CCccCcHHHHH-HHHH----cCHHHHHHHHHHc
Confidence 67777777777777666433 23333333222 3322 2455666666654
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