Citrus Sinensis ID: 035755

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFTFL
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccEEEEcc
Coil and Loop (DISEMBL)
MQGDEARVllgfppnsrpnasQVKAAYKRKVwechpdlfpvgrktdaESKFKLISEAYTYLLSGnfhlftfl
Flexible Loop (DISEMBL)
MQGDEARVllgfppnsrpnaSQVKAAYKRKVWechpdlfpvgrktdaESKFKLISEAYTYLLSGNFHLFTFL
Low Complexity Region (SEG)
MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFTFL
Disordered region (IsUnstruct)
************************AAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFTF*
Disordered Region (DISOPRED)
***DEARVLLGFPPNSRP*ASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFTFL
Disordered Region (DISEMBL)
MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFTFL
Disordered Region (DISPRO)
****EARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFTFL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFTFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
P50026	287	Chaperone protein DnaJ OS	yes	no	0.680	0.170	0.452	8e-05
B9KAB9	370	Chaperone protein DnaJ OS	yes	no	0.694	0.135	0.471	0.0001
P39101	391	Protein CAJ1 OS=Saccharom	yes	no	0.680	0.125	0.415	0.0003
A5IIT4	369	Chaperone protein DnaJ OS	yes	no	0.694	0.135	0.471	0.0004
B1LCI2	369	Chaperone protein DnaJ OS	yes	no	0.694	0.135	0.471	0.0004
Q9WZV3	369	Chaperone protein DnaJ OS	yes	no	0.694	0.135	0.471	0.0004
Q2GLU9	382	Chaperone protein DnaJ OS	yes	no	0.527	0.099	0.55	0.0008
Q6AEC0	369	Chaperone protein DnaJ OS	yes	no	0.666	0.130	0.396	0.0008

>sp|P50026|DNAJ_SYNE7 Chaperone protein DnaJ OS=Synechococcus elongatus (strain PCC 7942) GN=dnaJ PE=3 SV=2

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          LLG P ++  + + +KAA+++   +CHPDL P  R+  AE +FK ISEAY  L
Sbjct: 10 LLGIPQSA--DQAAIKAAFRKLARQCHPDLNPGDRQ--AEERFKQISEAYEIL 58

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|B9KAB9|DNAJ_THENN Chaperone protein DnaJ OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=dnaJ PE=3 SV=1

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +LG P N+     +++ AYKR V E HPD  P  RK +AE +FK I EAY  L
Sbjct: 11 ILGVPRNA--TQEEIRKAYKRLVKEWHPDRHPENRK-EAEQRFKEIQEAYEVL 60

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) (taxid: 309803)

>sp|P39101|CAJ1_YEAST Protein CAJ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAJ1 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +LG  P + P  +++K AY+RK  E HPD  P     DA++KF+ + EAY  L
Sbjct: 10 ILGIKPEATP--TEIKKAYRRKAMETHPDKHP--DDPDAQAKFQAVGEAYQVL 58

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A5IIT4|DNAJ_THEP1 Chaperone protein DnaJ OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dnaJ PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +LG P ++     ++K AYKR V E HPD  P  RK +AE +FK I EAY  L
Sbjct: 11 ILGVPRDA--TQEEIKRAYKRLVKEWHPDRHPENRK-EAEQRFKEIQEAYEVL 60

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) (taxid: 390874)

>sp|B1LCI2|DNAJ_THESQ Chaperone protein DnaJ OS=Thermotoga sp. (strain RQ2) GN=dnaJ PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +LG P ++     ++K AYKR V E HPD  P  RK +AE +FK I EAY  L
Sbjct: 11 ILGVPRDA--TQEEIKRAYKRLVKEWHPDRHPENRK-EAEQRFKEIQEAYEVL 60

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermotoga sp. (strain RQ2) (taxid: 126740)

>sp|Q9WZV3|DNAJ_THEMA Chaperone protein DnaJ OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=dnaJ PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +LG P ++     ++K AYKR V E HPD  P  RK +AE +FK I EAY  L
Sbjct: 11 ILGVPRDA--TQEEIKRAYKRLVKEWHPDRHPENRK-EAEQRFKEIQEAYEVL 60

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

>sp|Q2GLU9|DNAJ_ANAPZ Chaperone protein DnaJ OS=Anaplasma phagocytophilum (strain HZ) GN=dnaJ PE=3 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 2/40 (5%)

Query: 22 QVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          ++K +Y++KV+E HPD  P G K +AE KFK ISEAY  L
Sbjct: 20 EIKKSYRKKVFEYHPDRNP-GNK-EAEEKFKKISEAYDVL 57

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Anaplasma phagocytophilum (strain HZ) (taxid: 212042)

>sp|Q6AEC0|DNAJ_LEIXX Chaperone protein DnaJ OS=Leifsonia xyli subsp. xyli (strain CTCB07) GN=dnaJ PE=3 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +LG   N+ P+  ++K AY+R   E HPD+ P    T+A+ +FKL++ AY  L
Sbjct: 7  VLGVERNATPD--EIKKAYRRLARELHPDVNP---STEAQERFKLVTHAYDVL 54

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Leifsonia xyli subsp. xyli (strain CTCB07) (taxid: 281090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
224068695	103	predicted protein [Populus trichocarpa]	0.958	0.669	0.768	8e-24
118486837	73	unknown [Populus trichocarpa]	0.916	0.904	0.787	9e-23
449435144	134	PREDICTED: uncharacterized protein LOC10	0.902	0.485	0.738	4e-20
357511509	134	DnaJ [Medicago truncatula] gi|140055579|	0.888	0.477	0.734	4e-19
351726862	135	uncharacterized protein LOC100527460 [Gl	0.847	0.451	0.754	1e-18
147818956	329	hypothetical protein VITISV_040169 [Viti	0.902	0.197	0.707	2e-18
297744101	100	unnamed protein product [Vitis vinifera]	0.902	0.65	0.707	2e-18
297817566	138	DNAJ heat shock N-terminal domain-contai	0.902	0.471	0.692	3e-18
15228699	138	chaperone DnaJ domain-containing protein	0.902	0.471	0.692	4e-18
388506666	133	unknown [Lotus japonicus]	0.902	0.488	0.692	5e-18

>gi|224068695|ref|XP_002302802.1| predicted protein [Populus trichocarpa] gi|222844528|gb|EEE82075.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 53/69 (76%), Positives = 58/69 (84%)

Query: 1  MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTY 60
          MQGDEA+VLLGFPPNSRP  SQVKAAY++KVWE HPDLFP+  K  AESKFKLISEAYTY
Sbjct: 1  MQGDEAKVLLGFPPNSRPTLSQVKAAYRKKVWESHPDLFPLHEKPGAESKFKLISEAYTY 60

Query: 61 LLSGNFHLF 69
          L +GN  L 
Sbjct: 61 LQTGNSSLL 69

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486837|gb|ABK95253.1| unknown [Populus trichocarpa]

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/66 (78%), Positives = 57/66 (86%)

Query: 1  MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTY 60
          MQGDEA+VLLGFPPNSRP  SQVKAAY++KVWE HPDLFP+  K  AESKFKLISEAYTY
Sbjct: 1  MQGDEAKVLLGFPPNSRPTLSQVKAAYRKKVWESHPDLFPLHEKPGAESKFKLISEAYTY 60

Query: 61 LLSGNF 66
          L +G F
Sbjct: 61 LQTGLF 66

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435144|ref|XP_004135355.1| PREDICTED: uncharacterized protein LOC101221514 [Cucumis sativus] gi|449503297|ref|XP_004161932.1| PREDICTED: uncharacterized LOC101221514 [Cucumis sativus]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 54/65 (83%)

Query: 1  MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTY 60
          MQGDEAR LLGF P SRP++SQVK AYKR VW+ HPDLFP  +K  AESKFKLISEAY+ 
Sbjct: 1  MQGDEARTLLGFSPGSRPSSSQVKEAYKRMVWDTHPDLFPAHQKPQAESKFKLISEAYSC 60

Query: 61 LLSGN 65
          LLSG+
Sbjct: 61 LLSGS 65

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511509|ref|XP_003626043.1| DnaJ [Medicago truncatula] gi|140055579|gb|ABO80934.1| Heat shock protein DnaJ, N-terminal [Medicago truncatula] gi|355501058|gb|AES82261.1| DnaJ [Medicago truncatula] gi|388514157|gb|AFK45140.1| unknown [Medicago truncatula]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 52/64 (81%)

Query: 1  MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTY 60
          M  +EAR+LLGFPPNS P+ SQVK+AYK+KVWE HPDLFP   K  AESKFKLISEAYT 
Sbjct: 1  MDANEARILLGFPPNSNPSPSQVKSAYKQKVWESHPDLFPSHEKPHAESKFKLISEAYTC 60

Query: 61 LLSG 64
          LL G
Sbjct: 61 LLPG 64

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726862|ref|NP_001236373.1| uncharacterized protein LOC100527460 [Glycine max] gi|255632404|gb|ACU16552.1| unknown [Glycine max]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 50/61 (81%)

Query: 1  MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTY 60
          M  DEA++LLGFPPNSRP  SQVK+AYK+KVWE HPDLFP   K  AESKFKLISEAYT 
Sbjct: 1  MDADEAKILLGFPPNSRPTPSQVKSAYKKKVWESHPDLFPSHEKPLAESKFKLISEAYTC 60

Query: 61 L 61
          L
Sbjct: 61 L 61

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818956|emb|CAN67128.1| hypothetical protein VITISV_040169 [Vitis vinifera]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 50/65 (76%)

Query: 1  MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTY 60
          M+GDEAR+LLGFPP SR   SQ+KAAYK K WE HPD  PV  K  AESKFKLISEAY +
Sbjct: 1  MRGDEARLLLGFPPTSRLTLSQIKAAYKSKAWEYHPDRVPVQEKPGAESKFKLISEAYNF 60

Query: 61 LLSGN 65
          LL GN
Sbjct: 61 LLDGN 65

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744101|emb|CBI37071.3| unnamed protein product [Vitis vinifera]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 50/65 (76%)

Query: 1  MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTY 60
          M+GDEAR+LLGFPP SR   SQ+KAAYK K WE HPD  PV  K  AESKFKLISEAY +
Sbjct: 1  MRGDEARLLLGFPPTSRVTLSQIKAAYKSKAWEYHPDRVPVQEKPGAESKFKLISEAYNF 60

Query: 61 LLSGN 65
          LL GN
Sbjct: 61 LLDGN 65

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817566|ref|XP_002876666.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297322504|gb|EFH52925.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 55/65 (84%)

Query: 1  MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTY 60
          M+ +EA++LLGFPPNSRP+ SQVKAAY++KVWE HPDLFP  +K  AESKFK ISEAY+ 
Sbjct: 1  MEVEEAKILLGFPPNSRPDPSQVKAAYRKKVWESHPDLFPDDQKQVAESKFKSISEAYSC 60

Query: 61 LLSGN 65
          L SG+
Sbjct: 61 LESGD 65

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228699|ref|NP_191778.1| chaperone DnaJ domain-containing protein [Arabidopsis thaliana] gi|6899929|emb|CAB71879.1| putative protein [Arabidopsis thaliana] gi|16648712|gb|AAL25548.1| AT3g62190/T17J13_150 [Arabidopsis thaliana] gi|22137248|gb|AAM91469.1| AT3g62190/T17J13_150 [Arabidopsis thaliana] gi|332646799|gb|AEE80320.1| chaperone DnaJ domain-containing protein [Arabidopsis thaliana]

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 55/65 (84%)

Query: 1  MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTY 60
          M+ +EA++LLGFPPNSRP+ SQVKAAY++KVWE HPDLFP  +K  AESKFK ISEAY+ 
Sbjct: 1  MEVEEAKILLGFPPNSRPDPSQVKAAYRKKVWESHPDLFPDDQKLVAESKFKSISEAYSC 60

Query: 61 LLSGN 65
          L SG+
Sbjct: 61 LESGD 65

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506666|gb|AFK41399.1| unknown [Lotus japonicus]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 50/65 (76%)

Query: 1  MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTY 60
          M  ++AR+LLGFPPNS P  SQVK+AYK+KVWE HPDLFP   K  AESKFKLISEAY  
Sbjct: 1  MDANDARILLGFPPNSHPTPSQVKSAYKKKVWESHPDLFPSHEKPLAESKFKLISEAYAC 60

Query: 61 LLSGN 65
          LL G 
Sbjct: 61 LLPGG 65

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
TAIR|locus:2098043	138	AT3G62190 [Arabidopsis thalian	0.902	0.471	0.692	9.2e-20
SGD|S000000850	391	CAJ1 "Nuclear type II J heat s	0.680	0.125	0.415	4.1e-05
TAIR|locus:2825170	331	AT1G59725 [Arabidopsis thalian	0.708	0.154	0.433	6.6e-05
UNIPROTKB|E2RLL7	222	SAMD13 "Uncharacterized protei	0.694	0.225	0.433	8.1e-05
TIGR_CMR|APH_0015	382	APH_0015 "chaperone protein Dn	0.527	0.099	0.55	0.00011
POMBASE|SPCC63.13	208	SPCC63.13 "DNAJ domain protein	0.694	0.240	0.415	0.00015
TAIR|locus:2012743	349	AT1G10350 [Arabidopsis thalian	0.638	0.131	0.446	0.00015
TAIR|locus:2097880	350	AT3G47940 [Arabidopsis thalian	0.652	0.134	0.468	0.0002
UNIPROTKB|Q5T657	155	DNAJB5 "DnaJ homolog subfamily	0.75	0.348	0.372	0.00028
UNIPROTKB|Q74GD3	255	GSU0313 "DnaJ domain protein"	0.652	0.184	0.433	0.0004

TAIR|locus:2098043 AT3G62190 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 45/65 (69%), Positives = 55/65 (84%)

Query:     1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTY 60
             M+ +EA++LLGFPPNSRP+ SQVKAAY++KVWE HPDLFP  +K  AESKFK ISEAY+ 
Sbjct:     1 MEVEEAKILLGFPPNSRPDPSQVKAAYRKKVWESHPDLFPDDQKLVAESKFKSISEAYSC 60

Query:    61 LLSGN 65
             L SG+
Sbjct:    61 LESGD 65

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0048573 "photoperiodism, flowering" evidence=RCA

SGD|S000000850 CAJ1 "Nuclear type II J heat shock protein of the E. coli dnaJ family" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 105 (42.0 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 22/53 (41%), Positives = 32/53 (60%)

Query:     9 LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
             +LG  P + P  +++K AY+RK  E HPD  P     DA++KF+ + EAY  L
Sbjct:    10 ILGIKPEATP--TEIKKAYRRKAMETHPDKHP--DDPDAQAKFQAVGEAYQVL 58

GO:0005634 "nucleus" evidence=TAS

GO:0006457 "protein folding" evidence=ISS

GO:0051087 "chaperone binding" evidence=ISS

TAIR|locus:2825170 AT1G59725 [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 6.6e-05, P = 6.6e-05
 Identities = 23/53 (43%), Positives = 32/53 (60%)

Query:    15 NSRPNASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGN 65
             N  P+A++  +K +Y+R   + HPD  P   K +AE+KFK ISEAY  L   N
Sbjct:    10 NVNPSATEDDLKKSYRRLAMKWHPDKNPTSIKQEAEAKFKQISEAYDVLSDPN 62

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|E2RLL7 SAMD13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 98 (39.6 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 23/53 (43%), Positives = 30/53 (56%)

Query:     9 LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
             +LG P N+ P  S +K AY +     HPD  P  R+  AE KFK ++EAY  L
Sbjct:     7 VLGVPQNASP--SDIKKAYHQLALRVHPDKNPKNREA-AEEKFKQVTEAYEVL 56

GO:0005739 "mitochondrion" evidence=IEA

TIGR_CMR|APH_0015 APH_0015 "chaperone protein DnaJ" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
 Identities = 22/40 (55%), Positives = 29/40 (72%)

Query:    22 QVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
             ++K +Y++KV+E HPD  P G K +AE KFK ISEAY  L
Sbjct:    20 EIKKSYRKKVFEYHPDRNP-GNK-EAEEKFKKISEAYDVL 57

GO:0006457 "protein folding" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

POMBASE|SPCC63.13 SPCC63.13 "DNAJ domain protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 95 (38.5 bits), Expect = 0.00015, P = 0.00015
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query:    15 NSRPNAS--QVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGN 65
             N  P AS  ++K AYK+   E HPD      +  A  +F+L++EAY Y+LS N
Sbjct:    10 NITPKASAEEIKYAYKKAALETHPDRVSPSARARATEQFQLVNEAY-YVLSDN 61

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=ISM

TAIR|locus:2012743 AT1G10350 [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query:    15 NSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
             N   N   +K +Y+R   + HPD  P  +K +AE+KFK ISEAY  L
Sbjct:    12 NRNANEDDLKKSYRRMAMKWHPDKNPTSKK-EAEAKFKQISEAYDVL 57

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2097880 AT3G47940 [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 0.00020, P = 0.00020
 Identities = 22/47 (46%), Positives = 26/47 (55%)

Query:    15 NSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
             N       +K AYKR     HPD  P  R+ +AE+KFK ISEAY  L
Sbjct:    12 NHNATEDDLKKAYKRLAMIWHPDKNPSTRRDEAEAKFKRISEAYDVL 58

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q5T657 DNAJB5 "DnaJ homolog subfamily B member 5" [Homo sapiens (taxid:9606)]

 Score = 89 (36.4 bits), Expect = 0.00028, P = 0.00028
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query:     3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
             G +   +LG P  S  N  ++K AY++   + HPD     ++ +AE KFK I+EAY  L
Sbjct:     2 GKDYYKILGIP--SGANEDEIKKAYRKMALKYHPDK---NKEPNAEEKFKEIAEAYDVL 55

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|Q74GD3 GSU0313 "DnaJ domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 93 (37.8 bits), Expect = 0.00040, P = 0.00040
 Identities = 23/53 (43%), Positives = 32/53 (60%)

Query:     9 LLGFPPNSRPNASQVKAAYKRKVWECHPDLF---PVGRKTDAESKFKLISEAY 58
             LLG  P +  +A + K A++  V  CHPD F   PV R+ +AE + +LI EAY
Sbjct:    10 LLGLSPGA--SADEAKRAFRAAVSACHPDRFVNDPV-RRRNAEERLRLIIEAY 59

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00021919 hypothetical protein (103 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	72
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	4e-09
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	1e-08
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	4e-08
pfam00226	63	pfam00226, DnaJ, DnaJ domain	5e-08
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	6e-08
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	9e-07
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-06
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	3e-06
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	4e-06
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	7e-06
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	1e-05
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	4e-05
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	4e-05
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	5e-05
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	7e-05
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-04
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	1e-04
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	2e-04
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	2e-04
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	2e-04
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	3e-04
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	4e-04
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	4e-04
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	6e-04
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	8e-04
PHA03102	153	PHA03102, PHA03102, Small T antigen; Reviewed	0.001
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	0.001
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	0.001
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	0.002
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	0.003
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	0.003

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 46.8 bits (112), Expect = 4e-09
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAY 58
          +LG P ++  +  ++K AY++   + HPD  P G K +AE KFK I+EAY
Sbjct: 6  ILGVPRDA--SLDEIKKAYRKLALKYHPDKNP-GDKEEAEEKFKEINEAY 52

Length = 60

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 26/45 (57%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          NA+Q  +K AYKR V E HPD  P  RK +AE KFK I EAY  L
Sbjct: 15 NATQEEIKRAYKRLVKEWHPDRHPENRK-EAEQKFKEIQEAYEVL 58

Length = 369

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 44.5 bits (106), Expect = 4e-08
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 4/50 (8%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAY 58
          +LG PP++  +  ++K AY++   + HPD  P     +AE KFK I+EAY
Sbjct: 5  ILGVPPDA--SDEEIKKAYRKLALKYHPDKNP--DDPEAEEKFKEINEAY 50

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 44.4 bits (106), Expect = 5e-08
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAY 58
          +LG P ++  +  ++K AY++   + HPD  P      AE KFK I+EAY
Sbjct: 5  ILGVPRDA--SDEEIKKAYRKLALKYHPDKNP--GDPAAEEKFKEINEAY 50

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 47.2 bits (113), Expect = 6e-08
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 5/42 (11%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAY 58
          +AS+  +K AY++   + HPD     +  +AE KFK I+EAY
Sbjct: 11 DASEEEIKKAYRKLAKKYHPD---RNKDKEAEEKFKEINEAY 49

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 43.6 bits (104), Expect = 9e-07
 Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 4/42 (9%)

Query: 19 NAS--QVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAY 58
          NAS  ++K AY++   + HPD  P G K +AE KFK I EAY
Sbjct: 15 NASEDEIKKAYRKLAMKYHPDRNP-GDK-EAEEKFKEIKEAY 54

Length = 371

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          NA+Q  +K AY+R   + HPD        +AE KFK I+EAY  L
Sbjct: 14 NATQEEIKKAYRRLARKYHPDFNK---NPEAEEKFKEINEAYQVL 55

Length = 382

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          NASQ  +K A++    + HPDL P G K +AE KFK ISEAY  L
Sbjct: 14 NASQEDIKKAFRELAKKWHPDLHP-GNKAEAEEKFKEISEAYEVL 57

Length = 365

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 41.8 bits (99), Expect = 4e-06
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAY 58
          +LG   ++  +  ++K AY++   + HPD  P     +AE KFK I+EAY
Sbjct: 9  ILGVSKDA--SEEEIKKAYRKLAKKYHPDRNP--GDKEAEEKFKEINEAY 54

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 40.9 bits (96), Expect = 7e-06
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 4/45 (8%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          NA++  +K AY+R   + HPDL P G K  AE KFK I+EAY  L
Sbjct: 16 NATEEEIKKAYRRLAKKYHPDLNP-GDKE-AEQKFKEINEAYEIL 58

Length = 386

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +LG P N+  +  ++K A+K+   + HPD   V +   AE KFK I+EAYT L
Sbjct: 9  ILGVPKNA--SQDEIKKAFKKLARKYHPD---VNKSPGAEEKFKEINEAYTVL 56

Length = 291

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 38.9 bits (90), Expect = 4e-05
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 17  RPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF 69
           +    Q+  A+K+KV++ HPD    G     +  FKLI +A   L      L 
Sbjct: 57  KAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQ 109

Length = 379

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 39.0 bits (91), Expect = 4e-05
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 3/39 (7%)

Query: 23 VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +K AY+R   + HPD   V ++ DAE++FK ++EA+  L
Sbjct: 21 IKTAYRRLARKYHPD---VSKEPDAEARFKEVAEAWEVL 56

Length = 306

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 38.7 bits (90), Expect = 5e-05
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +LG   ++  +   +K AY++   + HPD     ++ DAE KFK ISEAY  L
Sbjct: 10 ILGLSKDA--SVEDIKKAYRKLAMKYHPDK---NKEPDAEEKFKEISEAYAVL 57

Length = 377

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 38.3 bits (89), Expect = 7e-05
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          NA +  +K AY++   + HPD   V  +  AE KFK ISEAY  L
Sbjct: 16 NADKKEIKKAYRKLARKYHPD---VSEEEGAEEKFKEISEAYAVL 57

Length = 378

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 20 ASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
            ++K +Y++   + HPD  P G K +AE  FK  +EAY  L
Sbjct: 18 EEEIKKSYRKLAMKYHPDRNP-GDK-EAEELFKEAAEAYEVL 57

Length = 366

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 20 ASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
            ++K AY++K  + HPD  P G K +AE KFK  +EAY  L
Sbjct: 19 VDEIKKAYRKKAIQYHPDKNP-GDK-EAEEKFKEAAEAYDVL 58

Length = 386

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +LG    + P   ++K AY++   + HPD  P     +AE +FK +SEAY  L
Sbjct: 6  ILGVSKTASPE--EIKKAYRKLAVKYHPDKNP--GDAEAEKRFKEVSEAYEVL 54

Length = 391

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 37.1 bits (85), Expect = 2e-04
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +LG PPN+      +K AY++   + HPD  P   K  AE KFK I+EAY  L
Sbjct: 11 ILGVPPNASLEE--IKKAYRKLALKYHPDRNPGDPKV-AEEKFKEINEAYEIL 60

Length = 237

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 5/45 (11%)

Query: 19 NAS--QVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +AS  ++K AY++   + HPD   + ++  A+ KFK ISEAY  L
Sbjct: 15 SASKDEIKKAYRKLSKKYHPD---INKEEGADEKFKEISEAYEVL 56

Length = 376

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +LG   N+  +  +VK AY++   + HPD   V +  DAE KFK + EAY  L
Sbjct: 9  VLGVDRNA--SVDEVKKAYRKLARKYHPD---VNKAPDAEDKFKEVKEAYDTL 56

Length = 371

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 5/45 (11%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +ASQ  +K AY++   + HPD+    ++  AE K+K + EAY  L
Sbjct: 15 DASQDEIKKAYRKLSKKYHPDI---NKEPGAEEKYKEVQEAYETL 56

Length = 380

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 8/55 (14%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTD--AESKFKLISEAYTYL 61
          +LG P ++    +++K AY++   E HPD      K D  AE +FK ISEAY  L
Sbjct: 14 VLGVPKDA--TEAEIKKAYRKLAREYHPD----ANKGDAKAEERFKEISEAYDVL 62

Length = 389

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 35.5 bits (82), Expect = 6e-04
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +AS+  +K AY++   + HPD  P     +AE KFK  +EAY  L
Sbjct: 15 DASEDEIKKAYRKLALQYHPDRNP--DNPEAEQKFKEAAEAYEVL 57

Length = 373

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 35.5 bits (82), Expect = 8e-04
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 16 SRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          S  +A ++K AY++   E HPD  P      AE +FK +SEA+  L
Sbjct: 19 SDASAEEIKKAYRKLARELHPDANPGDPA--AEERFKAVSEAHDVL 62

Length = 392

>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPD 37
          LLG P ++  N   ++ AY RK  E HPD
Sbjct: 10 LLGLPRSAWGNLPLMRKAYLRKCLEFHPD 38

Length = 153

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 17 RPNASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLL 62
            NAS   +K AY++   E HPD+ P     +A+ KFK IS AY  L 
Sbjct: 12 SRNASDAEIKRAYRKLARELHPDVNP---DEEAQEKFKEISVAYEVLS 56

Length = 378

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 19 NASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +  ++K AY++   + HPD  P  +  +AE  FK ++EAY  L
Sbjct: 16 DKDEIKKAYRKLALKYHPDKNPDNK--EAEEHFKEVNEAYEVL 56

Length = 397

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 19 NASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +  ++K AY+R   + HPD   V ++  AE +FK I+ AY  L
Sbjct: 16 DKDELKRAYRRLARKYHPD---VNKEPGAEDRFKEINRAYEVL 55

Length = 374

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 33.7 bits (77), Expect = 0.003
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 19 NASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +A ++K+AY++   + HPD      +  A  KF  I+EAY  L
Sbjct: 15 SADEIKSAYRKLALKYHPDRNK---EKGAAEKFAQINEAYAVL 54

Length = 371

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 22 QVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLL 62
          +++ AY++   + HPDL    +  DA  K   I+EA   LL
Sbjct: 20 EIRQAYRKLAKQYHPDL---NKSPDAHDKMVEINEAADVLL 57

Length = 372

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.95
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.92
PRK14296	372	chaperone protein DnaJ; Provisional	99.9
PRK14288	369	chaperone protein DnaJ; Provisional	99.89
PRK14286	372	chaperone protein DnaJ; Provisional	99.89
PRK14279	392	chaperone protein DnaJ; Provisional	99.88
PRK14287	371	chaperone protein DnaJ; Provisional	99.87
PRK14282	369	chaperone protein DnaJ; Provisional	99.87
PRK14294	366	chaperone protein DnaJ; Provisional	99.87
PRK14301	373	chaperone protein DnaJ; Provisional	99.87
PRK14276	380	chaperone protein DnaJ; Provisional	99.87
PRK14299	291	chaperone protein DnaJ; Provisional	99.87
PRK14285	365	chaperone protein DnaJ; Provisional	99.87
PRK14297	380	chaperone protein DnaJ; Provisional	99.87
PRK14283	378	chaperone protein DnaJ; Provisional	99.86
PRK14280	376	chaperone protein DnaJ; Provisional	99.86
PRK14277	386	chaperone protein DnaJ; Provisional	99.86
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.86
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.86
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.86
PRK10767	371	chaperone protein DnaJ; Provisional	99.86
PRK14298	377	chaperone protein DnaJ; Provisional	99.86
PRK14295	389	chaperone protein DnaJ; Provisional	99.86
PRK14278	378	chaperone protein DnaJ; Provisional	99.85
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.85
PRK14281	397	chaperone protein DnaJ; Provisional	99.84
PRK14291	382	chaperone protein DnaJ; Provisional	99.84
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.84
PRK14289	386	chaperone protein DnaJ; Provisional	99.84
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.84
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.84
PRK14284	391	chaperone protein DnaJ; Provisional	99.84
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.84
PRK14290	365	chaperone protein DnaJ; Provisional	99.83
PRK14300	372	chaperone protein DnaJ; Provisional	99.82
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.82
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.82
PRK14293	374	chaperone protein DnaJ; Provisional	99.81
PRK14292	371	chaperone protein DnaJ; Provisional	99.81
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.8
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.8
PRK00294	173	hscB co-chaperone HscB; Provisional	99.79
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.79
PRK05014	171	hscB co-chaperone HscB; Provisional	99.78
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.78
PRK01356	166	hscB co-chaperone HscB; Provisional	99.78
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.78
PRK03578	176	hscB co-chaperone HscB; Provisional	99.77
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.74
PHA03102	153	Small T antigen; Reviewed	99.72
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.72
PTZ00100	116	DnaJ chaperone protein; Provisional	99.7
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.69
PRK01773	173	hscB co-chaperone HscB; Provisional	99.68
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.62
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.62
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.58
PHA02624	647	large T antigen; Provisional	99.57
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.56
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.52
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.51
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.48
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.42
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.21
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	99.03
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	99.0
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.96
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	98.64
KOG0431	453	consensus Auxilin-like protein and related protein	97.98
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.92
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	97.8
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.69
PF13446	62	RPT: A repeated domain in UCH-protein	97.12
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	93.59
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	92.03
KOG0724	335	consensus Zuotin and related molecular chaperones	91.64
KOG3442	132	consensus Uncharacterized conserved protein [Funct	89.34
COG5552	88	Uncharacterized conserved protein [Function unknow	88.04
PF10041	78	DUF2277: Uncharacterized conserved protein (DUF227	85.37
PRK14102	105	nifW nitrogenase stabilizing/protective protein; P	80.08

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.1e-27  Score=160.03  Aligned_cols=66  Identities=30%  Similarity=0.424  Sum_probs=62.1

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      |..+|||+||||+.+|  |.+|||+|||+|+++||||+++.+  ++|+++|++|++||+|||||++|.-|
T Consensus         1 ~~~~dyYeiLGV~k~A--s~~EIKkAYRkLA~kyHPD~n~g~--~~AeeKFKEI~eAYEVLsD~eKRa~Y   66 (371)
T COG0484           1 MAKRDYYEILGVSKDA--SEEEIKKAYRKLAKKYHPDRNPGD--KEAEEKFKEINEAYEVLSDPEKRAAY   66 (371)
T ss_pred             CCccchhhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence            6689999999999999  999999999999999999999964  89999999999999999999999544

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.2e-25  Score=147.93  Aligned_cols=65  Identities=32%  Similarity=0.485  Sum_probs=61.5

Q ss_pred             cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755            2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      ..+|||+||||+.+|  +..+||+|||+|++++|||++|++  |.|.+.|+.|+.||+|||||.+|..|
T Consensus        14 ~~rDfYelLgV~k~A--sd~eIKkAYRKLALk~HPDkNpdd--p~A~e~F~~in~AYEVLsDpekRk~Y   78 (336)
T KOG0713|consen   14 AGRDFYELLGVPKNA--SDQEIKKAYRKLALKYHPDKNPDD--PNANEKFKEINAAYEVLSDPEKRKHY   78 (336)
T ss_pred             cCCCHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            458999999999999  999999999999999999999998  99999999999999999999998543

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.90  E-value=7.5e-24  Score=142.21  Aligned_cols=64  Identities=27%  Similarity=0.373  Sum_probs=59.7

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      |..+|||+||||+++|  +.++||+|||+++++||||+++.   +.++++|++|++||+||+||.+|.-
T Consensus         1 m~~~dyY~~Lgv~~~a--~~~eik~ayrkla~~~HPD~n~~---~~a~~~F~~i~~AyevLsD~~KR~~   64 (372)
T PRK14296          1 MKKKDYYEVLGVSKTA--SEQEIRQAYRKLAKQYHPDLNKS---PDAHDKMVEINEAADVLLDKDKRKQ   64 (372)
T ss_pred             CCCCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---chHHHHHHHHHHHHHHhcCHHHhhh
Confidence            6778999999999999  99999999999999999999875   6789999999999999999999843

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=1.1e-23  Score=141.20  Aligned_cols=63  Identities=30%  Similarity=0.390  Sum_probs=58.4

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      ..|||+||||+++|  |.++||+|||+++++||||+++.+  +.++++|++|++||+||+||.+|.-
T Consensus         2 ~~dyY~vLgv~~~A--s~~eIkkayrkla~k~HPD~~~~~--~~a~~~f~~i~~AYevLsd~~kR~~   64 (369)
T PRK14288          2 ELSYYEILEVEKHS--NQETIKKSYRKLALKYHPDRNAGD--KEAEEKFKLINEAYGVLSDEKKRAL   64 (369)
T ss_pred             CCChHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc--cHHHHHHHHHHHHHHHhccHHHHHH
Confidence            47999999999999  999999999999999999999754  6789999999999999999998843

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=4.5e-23  Score=138.44  Aligned_cols=65  Identities=28%  Similarity=0.380  Sum_probs=60.3

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      |...|||+||||+++|  +.++||+|||+++++||||+++.+  +.++++|++|++||+||+||.+|.-
T Consensus         1 ~~~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~   65 (372)
T PRK14286          1 MSERSYYDILGVSKSA--NDEEIKSAYRKLAIKYHPDKNKGN--KESEEKFKEATEAYEILRDPKKRQA   65 (372)
T ss_pred             CCCCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhccHHHHHH
Confidence            6778999999999999  999999999999999999998764  6789999999999999999998843

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=1.1e-22  Score=137.41  Aligned_cols=63  Identities=30%  Similarity=0.370  Sum_probs=58.7

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      .+|||+||||+++|  +.++||+|||+++++||||+++.+  +.++++|++|++||++|+||.+|.-
T Consensus         8 ~~Dyy~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vLsD~~KR~~   70 (392)
T PRK14279          8 EKDFYKELGVSSDA--SAEEIKKAYRKLARELHPDANPGD--PAAEERFKAVSEAHDVLSDPAKRKE   70 (392)
T ss_pred             ccCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhcchhhhhH
Confidence            47999999999999  999999999999999999999864  6789999999999999999999943

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=2.2e-22  Score=135.07  Aligned_cols=64  Identities=33%  Similarity=0.463  Sum_probs=59.3

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      |...|||+||||+++|  +.++||+|||+++++||||+++.   +.++++|+.|++||++|+||.+|..
T Consensus         1 ~~~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~---~~~~~~f~~i~~Ay~~L~d~~kR~~   64 (371)
T PRK14287          1 MSKRDYYEVLGVDRNA--SVDEVKKAYRKLARKYHPDVNKA---PDAEDKFKEVKEAYDTLSDPQKKAH   64 (371)
T ss_pred             CCCCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCcHhHHHH
Confidence            6678999999999999  99999999999999999999875   6788999999999999999998844

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=2.5e-22  Score=134.64  Aligned_cols=66  Identities=36%  Similarity=0.510  Sum_probs=60.0

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      |...|||+||||+++|  +.++||+|||+++++||||+++.+ .+.++++|++|++||++|+||.+|.-
T Consensus         1 ~~~~d~y~~lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~   66 (369)
T PRK14282          1 REKKDYYEILGVSRNA--TQEEIKRAYKRLVKEWHPDRHPEN-RKEAEQKFKEIQEAYEVLSDPQKRAM   66 (369)
T ss_pred             CCCCChHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCccc-hhHHHHHHHHHHHHHHHhcChhhHHH
Confidence            6778999999999999  999999999999999999998753 25689999999999999999999843

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=3.1e-22  Score=134.11  Aligned_cols=65  Identities=26%  Similarity=0.386  Sum_probs=60.5

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      |+.+|||+||||++++  +.++||++||+++++||||+++.+  +.++++|+.|++||++|+||.+|..
T Consensus         1 ~~~~d~y~~lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~~~~~f~~~~~Ay~vL~d~~~r~~   65 (366)
T PRK14294          1 MVKRDYYEILGVTRDA--SEEEIKKSYRKLAMKYHPDRNPGD--KEAEELFKEAAEAYEVLSDPKKRGI   65 (366)
T ss_pred             CCCCChHHHhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc--hHHHHHHHHHHHHHHHhccHHHHHH
Confidence            7789999999999999  999999999999999999999864  6789999999999999999998843

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=3.6e-22  Score=134.12  Aligned_cols=66  Identities=29%  Similarity=0.424  Sum_probs=60.5

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      |...|||+||||++++  +.++||+|||++++++|||+++++  ++++++|++|++||++|+||.+|..+
T Consensus         1 ~~~~~~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~y   66 (373)
T PRK14301          1 MSQRDYYEVLGVSRDA--SEDEIKKAYRKLALQYHPDRNPDN--PEAEQKFKEAAEAYEVLRDAEKRARY   66 (373)
T ss_pred             CCCCChHHhcCCCCCC--CHHHHHHHHHHHHHHhCCCcCCCC--hHHHHHHHHHHHHHHHhcchhhhhhh
Confidence            5678999999999999  999999999999999999999864  67899999999999999999988443

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=3.1e-22  Score=134.66  Aligned_cols=64  Identities=28%  Similarity=0.383  Sum_probs=59.4

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      |..+|||+||||+++|  +.++||+|||+++++||||+++.   +.++++|++|++||++|+||.+|.-
T Consensus         1 ~~~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~---~~a~~~f~~i~~Ay~vL~d~~kR~~   64 (380)
T PRK14276          1 MNNTEYYDRLGVSKDA--SQDEIKKAYRKLSKKYHPDINKE---PGAEEKYKEVQEAYETLSDPQKRAA   64 (380)
T ss_pred             CCCCCHHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhcCHhhhhh
Confidence            6678999999999999  99999999999999999999875   5788999999999999999998843

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=3.8e-22  Score=130.39  Aligned_cols=64  Identities=34%  Similarity=0.493  Sum_probs=59.3

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      |...|||+||||++++  +.++||++||++++++|||+++.   +.++++|+.|++||++|+||.+|..
T Consensus         1 m~~~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~kr~~   64 (291)
T PRK14299          1 MAYKDYYAILGVPKNA--SQDEIKKAFKKLARKYHPDVNKS---PGAEEKFKEINEAYTVLSDPEKRRI   64 (291)
T ss_pred             CCCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhcCHHHHHH
Confidence            6678999999999999  99999999999999999999875   6789999999999999999998843

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=4.1e-22  Score=133.57  Aligned_cols=64  Identities=28%  Similarity=0.393  Sum_probs=58.9

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      .+|||+||||+++|  +.++||+|||+++++||||+++.+  +.++++|++|++||++|+||.+|..+
T Consensus         2 ~~d~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~y   65 (365)
T PRK14285          2 KRDYYEILGLSKGA--SKDEIKKAYRKIAIKYHPDKNKGN--KEAESIFKEATEAYEVLIDDNKRAQY   65 (365)
T ss_pred             CCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHcCcchhHHH
Confidence            47999999999999  999999999999999999998764  67889999999999999999988443

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=5.2e-22  Score=133.53  Aligned_cols=65  Identities=28%  Similarity=0.396  Sum_probs=60.1

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      |...|||+||||++++  +.++||++||+++++||||+++.+  +.++++|+.|++||++|+||.+|..
T Consensus         1 ~~~~d~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~   65 (380)
T PRK14297          1 MASKDYYEVLGLEKGA--SDDEIKKAFRKLAIKYHPDKNKGN--KEAEEKFKEINEAYQVLSDPQKKAQ   65 (380)
T ss_pred             CCCCChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcCHhhhCc
Confidence            5668999999999999  999999999999999999999864  6789999999999999999998853

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=4.1e-22  Score=133.99  Aligned_cols=65  Identities=31%  Similarity=0.409  Sum_probs=59.8

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      |...|||+||||+++|  +.+|||++||+++++||||+++.   +.++++|++|++||++|+||.+|..+
T Consensus         2 ~~~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~Y   66 (378)
T PRK14283          2 AEKRDYYEVLGVDRNA--DKKEIKKAYRKLARKYHPDVSEE---EGAEEKFKEISEAYAVLSDDEKRQRY   66 (378)
T ss_pred             CCcCChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhchhHHHHHH
Confidence            4578999999999999  99999999999999999999875   67899999999999999999988543

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=5.1e-22  Score=133.46  Aligned_cols=64  Identities=30%  Similarity=0.413  Sum_probs=59.5

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      |...|||+||||++++  +.++||++||+++++||||+++.   +.++++|++|++||++|+||.+|.-
T Consensus         1 ~~~~~~y~iLgv~~~a--~~~eik~ayr~la~~~HpD~~~~---~~a~~~f~~i~~Ay~vL~d~~kr~~   64 (376)
T PRK14280          1 MAKRDYYEVLGVSKSA--SKDEIKKAYRKLSKKYHPDINKE---EGADEKFKEISEAYEVLSDDQKRAQ   64 (376)
T ss_pred             CCCCChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhccHhHHHH
Confidence            6678999999999999  99999999999999999999875   5689999999999999999998843

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=7.7e-22  Score=132.97  Aligned_cols=64  Identities=34%  Similarity=0.470  Sum_probs=58.9

Q ss_pred             cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      ...|||+||||++++  +.++||+|||+++++||||+++.+  +.++++|++|++||++|+||.+|.-
T Consensus         3 ~~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~   66 (386)
T PRK14277          3 AKKDYYEILGVDRNA--TEEEIKKAYRRLAKKYHPDLNPGD--KEAEQKFKEINEAYEILSDPQKRAQ   66 (386)
T ss_pred             CCCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            357999999999999  999999999999999999999864  6789999999999999999998843

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.86  E-value=9.1e-22  Score=103.19  Aligned_cols=61  Identities=33%  Similarity=0.518  Sum_probs=56.4

Q ss_pred             chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      |||+||||++++  +.++|+++|+++++++|||+++... ..+++.|..|++||++|++|.+|.
T Consensus         1 ~~y~iLgl~~~~--~~~eik~~y~~l~~~~HPD~~~~~~-~~~~~~~~~i~~Ay~~L~~~~~R~   61 (64)
T PF00226_consen    1 NPYEILGLPPDA--SDEEIKKAYRRLSKQYHPDKNSGDE-AEAEEKFARINEAYEILSDPERRR   61 (64)
T ss_dssp             HHHHHCTSTTTS--SHHHHHHHHHHHHHHTSTTTGTSTH-HHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             ChHHHCCCCCCC--CHHHHHHHHHhhhhccccccchhhh-hhhhHHHHHHHHHHHHhCCHHHHH
Confidence            699999999999  9999999999999999999988752 468999999999999999999874

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.86  E-value=2.5e-21  Score=100.18  Aligned_cols=60  Identities=35%  Similarity=0.543  Sum_probs=55.1

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhc
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNF   66 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~   66 (72)
                      +|||+||||++++  +.++|+++|+++++.+|||++++. .+.+.+.|..|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~--~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDA--SLDEIKKAYRKLALKYHPDKNPGD-KEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHHHcCCCC
Confidence            4899999999999  999999999999999999999863 37889999999999999999853

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.86  E-value=6.2e-22  Score=134.71  Aligned_cols=62  Identities=26%  Similarity=0.341  Sum_probs=56.1

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      |...|||+||||+++|  +.++||+|||+++++||||+++.      .++|++|++||++|+||.+|..|
T Consensus        25 ~~~~d~Y~vLGV~~~A--s~~eIKkAYrkla~k~HPDk~~~------~e~F~~i~~AYevLsD~~kR~~Y   86 (421)
T PTZ00037         25 VDNEKLYEVLNLSKDC--TTSEIKKAYRKLAIKHHPDKGGD------PEKFKEISRAYEVLSDPEKRKIY   86 (421)
T ss_pred             ccchhHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCch------HHHHHHHHHHHHHhccHHHHHHH
Confidence            3568999999999999  99999999999999999999753      37999999999999999998543

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=1.1e-21  Score=131.60  Aligned_cols=65  Identities=32%  Similarity=0.451  Sum_probs=60.0

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      |...|||+||||+++|  +.++||++||++++++|||+++.+  +.++++|++|++||++|+||.+|.-
T Consensus         1 ~~~~d~y~iLgv~~~a--s~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~r~~   65 (371)
T PRK10767          1 MAKRDYYEVLGVSRNA--SEDEIKKAYRKLAMKYHPDRNPGD--KEAEEKFKEIKEAYEVLSDPQKRAA   65 (371)
T ss_pred             CCCCChHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc--HHHHHHHHHHHHHHHHhcchhhhhH
Confidence            6678999999999999  999999999999999999998764  6788999999999999999998843

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=9.3e-22  Score=132.30  Aligned_cols=62  Identities=32%  Similarity=0.454  Sum_probs=57.9

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      .+|||+||||++++  +.++||++||++++++|||+++.   +.++++|++|++||++|+||.+|.-
T Consensus         4 ~~d~y~iLgv~~~a--~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~kR~~   65 (377)
T PRK14298          4 TRDYYEILGLSKDA--SVEDIKKAYRKLAMKYHPDKNKE---PDAEEKFKEISEAYAVLSDAEKRAQ   65 (377)
T ss_pred             CCCHHHhhCCCCCC--CHHHHHHHHHHHHHHhCccccCC---hhHHHHHHHHHHHHHHhcchHhhhh
Confidence            68999999999999  99999999999999999999875   6788999999999999999998843

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=1.1e-21  Score=132.35  Aligned_cols=63  Identities=32%  Similarity=0.446  Sum_probs=58.1

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      ..|||+||||++++  +.++||+|||+++++||||+++.+  +.++++|+.|++||++|+||.+|..
T Consensus         8 ~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~   70 (389)
T PRK14295          8 EKDYYKVLGVPKDA--TEAEIKKAYRKLAREYHPDANKGD--AKAEERFKEISEAYDVLSDEKKRKE   70 (389)
T ss_pred             ccCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc--hhHHHHHHHHHHHHHHHCchhhHHH
Confidence            46999999999999  999999999999999999998764  6789999999999999999998843

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.2e-21  Score=131.83  Aligned_cols=62  Identities=34%  Similarity=0.475  Sum_probs=57.8

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      .+|||+||||+++|  +.++||+|||+++++||||+++.   +.++++|+.|++||++|+||.+|.-
T Consensus         2 ~~d~y~iLgv~~~a--~~~eik~ayr~la~~~hpD~~~~---~~a~~~f~~i~~Ay~vL~d~~~r~~   63 (378)
T PRK14278          2 ARDYYGLLGVSRNA--SDAEIKRAYRKLARELHPDVNPD---EEAQEKFKEISVAYEVLSDPEKRRI   63 (378)
T ss_pred             CCCcceecCCCCCC--CHHHHHHHHHHHHHHHCCCCCCc---HHHHHHHHHHHHHHHHhchhhhhhh
Confidence            37999999999999  99999999999999999999985   6789999999999999999998843

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.3e-21  Score=131.89  Aligned_cols=65  Identities=23%  Similarity=0.366  Sum_probs=60.7

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      -++||+||||..++  +..+||++||+++++||||++|.. ..++++.|+.|+.||+|||||..|.|+
T Consensus         7 ~~c~YE~L~v~~~a--~d~eik~~YRklALq~HPDknpd~-ieeat~~F~~i~aAYeVLSdp~eR~wy   71 (508)
T KOG0717|consen    7 KRCYYEVLGVERDA--DDDEIKKNYRKLALQYHPDKNPDR-IEEATQQFQLIQAAYEVLSDPQERAWY   71 (508)
T ss_pred             hhHHHHHhcccccC--CHHHHHHHHHHHHHhhCCCCCCcc-HHHHHHHHHHHHHHHHHhcChHhhhhH
Confidence            36899999999999  999999999999999999998764 378999999999999999999999987

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=3.3e-21  Score=130.33  Aligned_cols=63  Identities=27%  Similarity=0.433  Sum_probs=58.2

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      ..|||+||||++++  +.++||++||++++++|||+++.+  +.++++|+.|++||++|+||.+|..
T Consensus         2 ~~d~y~iLgv~~~a--~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~   64 (397)
T PRK14281          2 KRDYYEVLGVSRSA--DKDEIKKAYRKLALKYHPDKNPDN--KEAEEHFKEVNEAYEVLSNDDKRRR   64 (397)
T ss_pred             CCChhhhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            47999999999999  999999999999999999999864  6788999999999999999998843

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=2.8e-21  Score=130.10  Aligned_cols=62  Identities=32%  Similarity=0.471  Sum_probs=57.7

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      .+|||+||||++++  +.++||+|||++++++|||+++.   +.++++|+.|++||++|+||.+|..
T Consensus         2 ~~d~Y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vLsd~~kR~~   63 (382)
T PRK14291          2 KKDYYEILGVSRNA--TQEEIKKAYRRLARKYHPDFNKN---PEAEEKFKEINEAYQVLSDPEKRKL   63 (382)
T ss_pred             CCCHHHhhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhcCHHHHHH
Confidence            47999999999999  99999999999999999999876   6788999999999999999998843

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=2.3e-21  Score=128.45  Aligned_cols=62  Identities=31%  Similarity=0.467  Sum_probs=57.4

Q ss_pred             cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755            2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      ....+|.||||+++|  +.+|||++||+++++|||||++.     +.++|++|++||+|||||.+|..+
T Consensus         2 ~~~~~y~il~v~~~A--s~~eikkayrkla~k~HpDkn~~-----~~ekfkei~~AyevLsd~ekr~~y   63 (337)
T KOG0712|consen    2 KNTKLYDILGVSPDA--SEEEIKKAYRKLALKYHPDKNPD-----AGEKFKEISQAYEVLSDPEKREIY   63 (337)
T ss_pred             cccccceeeccCCCc--CHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHHhcCHHHHHHH
Confidence            457899999999999  99999999999999999999987     579999999999999999999544

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=4.7e-21  Score=129.12  Aligned_cols=66  Identities=29%  Similarity=0.459  Sum_probs=60.5

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc-hh
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL-FT   70 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~-~~   70 (72)
                      |+..|||++|||++++  +.+||+++||++++++|||+++.+  +.++++|+.|++||++|+||.+|. |+
T Consensus         2 ~~~~~~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~yD   68 (386)
T PRK14289          2 AEKRDYYEVLGVSKTA--TVDEIKKAYRKKAIQYHPDKNPGD--KEAEEKFKEAAEAYDVLSDPDKRSRYD   68 (386)
T ss_pred             CccCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCC--hHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            4568999999999999  999999999999999999999864  678999999999999999999885 54

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.84  E-value=3.9e-21  Score=126.34  Aligned_cols=63  Identities=29%  Similarity=0.489  Sum_probs=58.9

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      |+..|||+||||++++  +.++||++||++++++|||+++.   +.++++|++|++||++|+||.+|.
T Consensus         1 ~~~~d~y~~Lgv~~~a--~~~eik~ayr~la~k~HPD~~~~---~~~~~~f~~i~~Ay~~L~~~~kr~   63 (306)
T PRK10266          1 MELKDYYAIMGVKPTD--DLKTIKTAYRRLARKYHPDVSKE---PDAEARFKEVAEAWEVLSDEQRRA   63 (306)
T ss_pred             CCcCChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhhhHHHHH
Confidence            6778999999999999  99999999999999999999765   578999999999999999999884

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.84  E-value=1.4e-20  Score=95.77  Aligned_cols=55  Identities=38%  Similarity=0.650  Sum_probs=51.8

Q ss_pred             chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 035755            5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLS   63 (72)
Q Consensus         5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d   63 (72)
                      |||+||||++++  +.++|+++|+++++++|||+.++.  ..+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~--~~~~ik~~y~~l~~~~HPD~~~~~--~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDA--SDEEIKKAYRKLALKYHPDKNPDD--PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcC
Confidence            699999999999  999999999999999999999875  6788999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=5.2e-21  Score=129.11  Aligned_cols=62  Identities=29%  Similarity=0.439  Sum_probs=57.7

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      .|||+||||++++  +.++||++||+++++||||+++++  +.++++|+.|++||++|+||.+|.-
T Consensus         1 ~d~y~iLgv~~~a--~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~   62 (391)
T PRK14284          1 MDYYTILGVSKTA--SPEEIKKAYRKLAVKYHPDKNPGD--AEAEKRFKEVSEAYEVLSDAQKRES   62 (391)
T ss_pred             CCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            3899999999999  999999999999999999999864  6789999999999999999998843

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=5.8e-21  Score=123.05  Aligned_cols=63  Identities=27%  Similarity=0.380  Sum_probs=59.9

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      .|+|.||||++++  +.++||++||++++++|||+++++  |++..+|+.||+||+||+||.+|.++
T Consensus        31 ~~LYdVLgl~k~a--t~d~IKKaYR~L~~k~HPD~~gd~--P~~~dkf~eIN~Ay~ILsD~~kR~~Y   93 (279)
T KOG0716|consen   31 LDLYDVLGLPKTA--TKDEIKKAYRKLALKYHPDKNGDN--PEATDKFKEINTAYAILSDPTKRNVY   93 (279)
T ss_pred             hHHHHHhCCCccc--chHHHHHHHHHHHHHhCCCcCCCC--chhHHHHHHHHHHHHHhcChhhhhhH
Confidence            5799999999999  999999999999999999999987  89999999999999999999999765

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.4e-20  Score=126.13  Aligned_cols=64  Identities=34%  Similarity=0.474  Sum_probs=58.0

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      ..|||+||||+++|  +.++|+++||++++++|||+++.+ ...++++|+.|++||++|+||.+|..
T Consensus         2 ~~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~~L~d~~~r~~   65 (365)
T PRK14290          2 AKDYYKILGVDRNA--SQEDIKKAFRELAKKWHPDLHPGN-KAEAEEKFKEISEAYEVLSDPQKRRQ   65 (365)
T ss_pred             CCChhhhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc-hhHHHHHHHHHHHHHHHhcChhhhhh
Confidence            47999999999999  999999999999999999998764 24789999999999999999998843

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.6e-20  Score=126.14  Aligned_cols=61  Identities=30%  Similarity=0.398  Sum_probs=56.7

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      .|||+||||++++  +.++||++||++++++|||+++.   +.++++|++|++||++|+|+.+|.-
T Consensus         3 ~~~y~iLgv~~~a--s~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~r~~   63 (372)
T PRK14300          3 QDYYQILGVSKTA--SQADLKKAYLKLAKQYHPDTTDA---KDAEKKFKEINAAYDVLKDEQKRAA   63 (372)
T ss_pred             CChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhhhHhHhhH
Confidence            7999999999999  99999999999999999999874   5688899999999999999998843

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=2.8e-20  Score=121.88  Aligned_cols=61  Identities=31%  Similarity=0.498  Sum_probs=58.8

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhcc
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFH   67 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R   67 (72)
                      ..|||.||||++++  +..+|+++|+..+++||||++|++  |.|.++|+.+.+||+||+|+..|
T Consensus         4 ~~dyY~lLgi~~~a--t~~eIkKaYr~kaL~~HPDKNp~d--P~A~ekFq~L~eAy~VL~D~~~R   64 (296)
T KOG0691|consen    4 DTDYYDLLGISEDA--TDAEIKKAYRKKALQYHPDKNPGD--PQAAEKFQELSEAYEVLSDEESR   64 (296)
T ss_pred             cchHHHHhCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCC--hHHHHHHHHHHHHHHHhcCHHHH
Confidence            57999999999999  999999999999999999999998  77999999999999999999988

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.82  E-value=2.7e-20  Score=124.16  Aligned_cols=60  Identities=30%  Similarity=0.416  Sum_probs=55.9

Q ss_pred             chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      |||+||||++++  +.++||++||++++++|||+++.   +.++++|+.|++||++|+|+.+|..
T Consensus         1 d~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~~R~~   60 (354)
T TIGR02349         1 DYYEILGVSKDA--SEEEIKKAYRKLAKKYHPDRNKD---KEAEEKFKEINEAYEVLSDPEKRAQ   60 (354)
T ss_pred             ChHHhCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhhChHHHHh
Confidence            799999999999  99999999999999999999874   6788999999999999999998843

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=3.7e-20  Score=124.40  Aligned_cols=61  Identities=28%  Similarity=0.443  Sum_probs=56.8

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      ..|||+||||++++  +.++|+++||++++++|||+++.   +.++++|+.|++||++|+||.+|.
T Consensus         2 ~~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~vL~~~~~R~   62 (374)
T PRK14293          2 AADYYEILGVSRDA--DKDELKRAYRRLARKYHPDVNKE---PGAEDRFKEINRAYEVLSDPETRA   62 (374)
T ss_pred             CCChhhhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC---cCHHHHHHHHHHHHHHHhchHHHH
Confidence            47999999999999  99999999999999999999875   568899999999999999999884

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=5.8e-20  Score=123.27  Aligned_cols=61  Identities=30%  Similarity=0.414  Sum_probs=57.0

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      .|||+||||++++  +.++||++||++++++|||+++.   +.++++|+.|++||++|+||.+|..
T Consensus         2 ~d~y~~Lgv~~~a--~~~~ik~ayr~l~~~~hpD~~~~---~~a~~~~~~i~~Ay~vL~d~~~r~~   62 (371)
T PRK14292          2 MDYYELLGVSRTA--SADEIKSAYRKLALKYHPDRNKE---KGAAEKFAQINEAYAVLSDAEKRAH   62 (371)
T ss_pred             CChHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC---hhHHHHHHHHHHHHHHhcchhhhhh
Confidence            5899999999999  99999999999999999999975   6789999999999999999998843

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=5.5e-20  Score=125.56  Aligned_cols=67  Identities=30%  Similarity=0.372  Sum_probs=61.3

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CCCchHHHHHHHHHHHHHHHhcChhccchhc
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFP-VGRKTDAESKFKLISEAYTYLLSGNFHLFTF   71 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~-~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~~   71 (72)
                      ..|+|.+|+|+++|  +.+||+++||++++.|||||+- ++.+..|++.|++|.+||+||+||.+|..+.
T Consensus         8 e~e~Ya~LNlpkdA--t~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD   75 (546)
T KOG0718|consen    8 EIELYALLNLPKDA--TDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYD   75 (546)
T ss_pred             hhhHHHHhCCCccc--CHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            45999999999999  9999999999999999999987 4556889999999999999999999996553

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=7.9e-20  Score=119.57  Aligned_cols=62  Identities=31%  Similarity=0.439  Sum_probs=58.2

Q ss_pred             cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      ...|||+||||+.++  +..|||++|++|++++|||.+..   +.+.++|++|.+||++|+|+.+|.
T Consensus        41 ~~~d~Y~vLgv~~~A--t~~EIK~Af~~LaKkyHPD~n~~---~~a~~kF~eI~~AYEiLsd~eKR~  102 (288)
T KOG0715|consen   41 SKEDYYKVLGVSRNA--TLSEIKSAFRKLAKKYHPDVNKD---KEASKKFKEISEAYEILSDEEKRQ  102 (288)
T ss_pred             CCcchhhhhCcCCCC--CHHHHHHHHHHHHHhhCCCCCCC---cchhhHHHHHHHHHHHhcCHHHHH
Confidence            345999999999999  99999999999999999999998   589999999999999999999884

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.79  E-value=2.6e-19  Score=110.08  Aligned_cols=72  Identities=25%  Similarity=0.261  Sum_probs=62.9

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---chHHHHHHHHHHHHHHHhcChhccchhcC
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR---KTDAESKFKLISEAYTYLLSGNFHLFTFL   72 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~---~~~~~~~~~~i~~Ay~~L~d~~~R~~~~~   72 (72)
                      |...|||++|||++...++..+|+++||++++++|||++++..   +..+.+.+..||+||++|+||.+|.-++|
T Consensus         1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294          1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            5678999999999998889999999999999999999987642   34477889999999999999999976653

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=2.8e-19  Score=112.48  Aligned_cols=61  Identities=28%  Similarity=0.440  Sum_probs=56.6

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhcc
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFH   67 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R   67 (72)
                      .-|+||||||++++  +..|||++||+|++++||||+++.  .+.++.|..|++||+.|+|+..|
T Consensus        98 ~fDPyEILGl~pga--s~~eIKkaYR~LSik~HPDK~~~~--~~~e~~~~~I~KAY~aLTD~~sr  158 (230)
T KOG0721|consen   98 KFDPYEILGLDPGA--SEKEIKKAYRRLSIKYHPDKQPPE--EGDEEFFEAIAKAYQALTDKKSR  158 (230)
T ss_pred             cCCcHHhhCCCCCC--CHHHHHHHHHHhhhhhCCCcCCCc--chhHHHHHHHHHHHHHhcchhhH
Confidence            46999999999999  999999999999999999999874  56788899999999999999887

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.78  E-value=3.8e-19  Score=109.14  Aligned_cols=68  Identities=19%  Similarity=0.215  Sum_probs=58.1

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---chHHHHHHHHHHHHHHHhcChhccchhc
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR---KTDAESKFKLISEAYTYLLSGNFHLFTF   71 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~---~~~~~~~~~~i~~Ay~~L~d~~~R~~~~   71 (72)
                      .|||++|||++...++..+|+++|+++++++|||+.++..   +..+.+.+..||+||++|+||.+|.-++
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yl   71 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYL   71 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHH
Confidence            3899999999986669999999999999999999986532   2346778999999999999999986554

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.78  E-value=3.4e-19  Score=129.43  Aligned_cols=63  Identities=21%  Similarity=0.164  Sum_probs=57.8

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      ..+||+||||+++|  +..+||++||++++++|||++++   +.+..+|+.|++||++||||.+|..+
T Consensus       572 d~dYYdILGVs~dA--S~~EIKKAYRKLAlkyHPDKN~~---~~A~ekFq~I~EAYeVLSDp~kRk~Y  634 (1136)
T PTZ00341        572 DTLFYDILGVGVNA--DMKEISERYFKLAENYYPPKRSG---NEGFHKFKKINEAYQILGDIDKKKMY  634 (1136)
T ss_pred             CCChHHHcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            47999999999999  99999999999999999999987   35788999999999999999998543

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.78  E-value=3.5e-19  Score=108.88  Aligned_cols=69  Identities=19%  Similarity=0.136  Sum_probs=58.3

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-CchHHHHHHHHHHHHHHHhcChhccchhcC
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVG-RKTDAESKFKLISEAYTYLLSGNFHLFTFL   72 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~-~~~~~~~~~~~i~~Ay~~L~d~~~R~~~~~   72 (72)
                      .|||++|||+++..++..+|+++|+++++++|||+.++. .+..+.+.+..||+||++|+||.+|.-++|
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL   71 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML   71 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            589999999998656999999999999999999998752 123355678899999999999999976654

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=3e-19  Score=113.50  Aligned_cols=66  Identities=21%  Similarity=0.338  Sum_probs=60.7

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      ..|+|+||||..++  +..+|+++|+++++++|||+++.....++.++|+.++.||+||+|..+|..+
T Consensus        13 ~~d~YevLGVer~a--~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~Y   78 (264)
T KOG0719|consen   13 KKDLYEVLGVERDA--TDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVY   78 (264)
T ss_pred             ccCHHHHhhhcccC--CHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            35999999999999  9999999999999999999998665678999999999999999999998544

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.77  E-value=1.7e-18  Score=106.72  Aligned_cols=69  Identities=25%  Similarity=0.254  Sum_probs=58.5

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---chHHHHHHHHHHHHHHHhcChhccchhc
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR---KTDAESKFKLISEAYTYLLSGNFHLFTF   71 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~---~~~~~~~~~~i~~Ay~~L~d~~~R~~~~   71 (72)
                      ..|||+||||++...++..+|+++|+++++++|||+++...   +..+.+.+..||+||++|++|.+|.-++
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yl   76 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYL   76 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence            47999999999987679999999999999999999987532   1234556789999999999999997655

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=5e-18  Score=104.08  Aligned_cols=65  Identities=35%  Similarity=0.460  Sum_probs=58.9

Q ss_pred             cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      ...++|+||||++++  +..+|+++||++++++|||+++.+.. .+++.|..|++||++|+|+..|..
T Consensus         4 ~~~~~y~iLgv~~~a--s~~eik~ayrkla~~~HPD~~~~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~   68 (237)
T COG2214           4 DLLDYYEILGVPPNA--SLEEIKKAYRKLALKYHPDRNPGDPK-VAEEKFKEINEAYEILSDPERRAE   68 (237)
T ss_pred             hhhhHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchh-HHHHHHHHHHHHHHHhhCHHHHHH
Confidence            357999999999999  99999999999999999999998522 599999999999999999998853

>PHA03102 Small T antigen; Reviewed

Probab=99.72  E-value=1e-17  Score=101.25  Aligned_cols=61  Identities=31%  Similarity=0.348  Sum_probs=54.8

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      .+.+|+||||++++..|..+||++||++++++|||++++      +++|+.|++||++|+++.+|.-
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~------~e~~k~in~Ay~~L~d~~~r~~   64 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD------EEKMKELNTLYKKFRESVKSLR   64 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch------hHHHHHHHHHHHHHhhHHHhcc
Confidence            467899999999987799999999999999999999654      3789999999999999988853

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.72  E-value=1.5e-17  Score=118.82  Aligned_cols=61  Identities=25%  Similarity=0.311  Sum_probs=57.0

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      +|||+||||++++  +..+||++||++++++|||+++.   +.+.++|+.|++||++|+||.+|.-
T Consensus         2 ~DYYeVLGVs~dA--S~eEIKKAYRKLAKKyHPDKn~~---~eAeekFqeINEAYEVLSDP~KRa~   62 (871)
T TIGR03835         2 RDYYEVLGIDRDA--DEQEIKKAFRKLAKKYHPDRNKA---PDAASIFAEINEANDVLSNPKKRAN   62 (871)
T ss_pred             CChhHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCCHHHHHH
Confidence            6999999999999  99999999999999999999876   6778899999999999999998853

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.70  E-value=5.2e-17  Score=94.21  Aligned_cols=54  Identities=26%  Similarity=0.307  Sum_probs=48.5

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhc
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLL   62 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~   62 (72)
                      |+..++|+||||++++  +.++|+++||++++++|||+.++      .+.+.+|++||++|.
T Consensus        62 Ms~~eAy~ILGv~~~A--s~~eIkkaYRrLa~~~HPDkgGs------~~~~~kIneAyevL~  115 (116)
T PTZ00100         62 MSKSEAYKILNISPTA--SKERIREAHKQLMLRNHPDNGGS------TYIASKVNEAKDLLL  115 (116)
T ss_pred             CCHHHHHHHcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHHHh
Confidence            5678999999999999  99999999999999999998543      367889999999985

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.69  E-value=5.5e-17  Score=105.28  Aligned_cols=61  Identities=25%  Similarity=0.351  Sum_probs=53.6

Q ss_pred             cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-----CchHHHHHHHHHHHHHHHhcCh
Q 035755            2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVG-----RKTDAESKFKLISEAYTYLLSG   64 (72)
Q Consensus         2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~-----~~~~~~~~~~~i~~Ay~~L~d~   64 (72)
                      +..|+|+||||++++  |.++||++||++++++|||+..+.     ..+.++++|+.|++||++|+..
T Consensus       198 ~~~~ay~vLgv~~~a--s~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        198 TLEDAYKVLGVSESD--DDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             cHHhHHHHcCCCCCC--CHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            457999999999999  999999999999999999997542     1356899999999999999864

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.68  E-value=1.3e-16  Score=98.10  Aligned_cols=69  Identities=16%  Similarity=0.177  Sum_probs=60.6

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---chHHHHHHHHHHHHHHHhcChhccchhcC
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR---KTDAESKFKLISEAYTYLLSGNFHLFTFL   72 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~---~~~~~~~~~~i~~Ay~~L~d~~~R~~~~~   72 (72)
                      .|||++||+++...++...++++|+.+++++|||+.....   +..+.+....||+||.+|+||.+|.-++|
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            5899999999998889999999999999999999987642   34567788999999999999999986654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.62  E-value=5.1e-16  Score=104.28  Aligned_cols=66  Identities=27%  Similarity=0.356  Sum_probs=60.0

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-chHHHHHHHHHHHHHHHhcChhcc-chh
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR-KTDAESKFKLISEAYTYLLSGNFH-LFT   70 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~-~~~~~~~~~~i~~Ay~~L~d~~~R-~~~   70 (72)
                      .+|||.||||.+++  +..||.++||+++.+||||...... +..++.+|.-|-.|-+||+||.+| .|+
T Consensus       393 kRDYYKILGVkRnA--sKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFD  460 (504)
T KOG0624|consen  393 KRDYYKILGVKRNA--SKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFD  460 (504)
T ss_pred             cchHHHHhhhcccc--cHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhcc
Confidence            58999999999999  9999999999999999999988743 678999999999999999999877 443

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=2.4e-16  Score=101.75  Aligned_cols=63  Identities=22%  Similarity=0.316  Sum_probs=58.4

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      .+|+|+||||..++  +..+|.++||+|++++|||++.+   ++..+.|..|.+||++|.|...|.++
T Consensus        32 ~enCYdVLgV~Rea--~KseIakAYRqLARrhHPDr~r~---~e~k~~F~~iAtayeilkd~e~rt~y   94 (329)
T KOG0722|consen   32 AENCYDVLGVAREA--NKSEIAKAYRQLARRHHPDRNRD---PESKKLFVKIATAYEILKDNETRTQY   94 (329)
T ss_pred             chhHHHHhhhhhhc--cHHHHHHHHHHHHHHhCCcccCC---chhhhhhhhhhcccccccchhhHHhH
Confidence            47999999999999  99999999999999999999998   56669999999999999999998765

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.9e-15  Score=103.21  Aligned_cols=63  Identities=24%  Similarity=0.300  Sum_probs=59.2

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      ..|+|.+|||+.++  +.++||+.||+++...||||+-.   +.|+|.|+.++-||++|+|+.+|.-|
T Consensus       234 ~~daYsvlGl~~d~--sd~~lKk~Yrk~A~LVhPDKn~~---~~A~Eafk~Lq~Afevig~~~kR~eY  296 (490)
T KOG0720|consen  234 ILDAYSALGLPSDC--SDADLKKNYRKKAMLVHPDKNMI---PRAEEAFKKLQVAFEVIGDSVKRKEY  296 (490)
T ss_pred             CCCchhhcCCCCCC--CHHHHHHHHHhhceEeCCCccCC---hhHHHHHHHHHHHHHHhcchhhhhHH
Confidence            67999999999999  99999999999999999999985   89999999999999999999988543

>PHA02624 large T antigen; Provisional

Probab=99.57  E-value=4.9e-15  Score=104.55  Aligned_cols=60  Identities=33%  Similarity=0.367  Sum_probs=54.3

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      .+++|++|||+++++.+.++||++||++++++|||+.++      +++|++|++||++|+++.+|.
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd------eekfk~Ln~AYevL~d~~k~~   69 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD------EEKMKRLNSLYKKLQEGVKSA   69 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc------HHHHHHHHHHHHHHhcHHHhh
Confidence            478999999999988899999999999999999999644      478999999999999988773

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.56  E-value=2.6e-15  Score=102.91  Aligned_cols=65  Identities=25%  Similarity=0.392  Sum_probs=59.6

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPV---GRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~---~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      .-|+||||||+.++  +..+||++||+++.++||||.++   ..+.+.++.+..|++||+.|+|...|.=
T Consensus        97 ~fDPyEILGI~~~t--s~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~ren  164 (610)
T COG5407          97 GFDPYEILGIDQDT--SERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRREN  164 (610)
T ss_pred             CCChHHhhcccCCC--cHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            35899999999999  99999999999999999999887   5678899999999999999999988743

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=1.5e-14  Score=92.17  Aligned_cols=64  Identities=33%  Similarity=0.485  Sum_probs=57.6

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      ..|+|.||||..++  +..+|+++|+++++++|||+++.. ...++.+|.+|.+||++|+|+.+|..
T Consensus         2 ~~d~~~~l~i~~~a--s~~~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~   65 (306)
T KOG0714|consen    2 GKDYYKILGIARSA--SEEDIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIAEAYEVLSDPKKRKI   65 (306)
T ss_pred             cccHHHHhCccccc--cHHHHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhhccccccCCHHHhhh
Confidence            46999999999888  888999999999999999998886 56777799999999999999998853

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.8e-14  Score=98.00  Aligned_cols=62  Identities=31%  Similarity=0.430  Sum_probs=58.3

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhcc
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFH   67 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R   67 (72)
                      ..|||.||||...+  +..+|+++||++++.+|||++.++ +.+++.+|+++-+||.+|+||.+|
T Consensus       372 Rkd~ykilGi~~~a--s~~eikkayrk~AL~~Hpd~~ags-q~eaE~kFkevgeAy~il~d~~kr  433 (486)
T KOG0550|consen  372 RKDWYKILGISRNA--SDDEIKKAYRKLALVHHPDKNAGS-QKEAEAKFKEVGEAYTILSDPMKR  433 (486)
T ss_pred             hhhHHHHhhhhhhc--ccchhhhHHHHHHHHhCCCcCcch-hHHHHHHHHHHHHHHHHhcCHHHH
Confidence            46999999999999  999999999999999999999886 578999999999999999999877

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.48  E-value=8.8e-14  Score=84.45  Aligned_cols=55  Identities=20%  Similarity=0.277  Sum_probs=47.0

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCC---CchHHHHHHHHHHHHHHHhcChhccchhcC
Q 035755           18 PNASQVKAAYKRKVWECHPDLFPVG---RKTDAESKFKLISEAYTYLLSGNFHLFTFL   72 (72)
Q Consensus        18 ~~~~~ik~~yr~l~~~~hPDk~~~~---~~~~~~~~~~~i~~Ay~~L~d~~~R~~~~~   72 (72)
                      ++..+|+++|+++++++|||+.++.   .+..+.+.+..||+||++|+||.+|.-++|
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL   60 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML   60 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            5889999999999999999997653   234578899999999999999999976654

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=3.4e-13  Score=84.64  Aligned_cols=59  Identities=22%  Similarity=0.401  Sum_probs=54.9

Q ss_pred             chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhc
Q 035755            5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNF   66 (72)
Q Consensus         5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~   66 (72)
                      |+|+||.|.|+.  +.++|++.||+++...|||+++.+ .+.|...|..|.+||..|-|+..
T Consensus        54 NpfeVLqIdpev--~~edikkryRklSilVHPDKN~Dd-~~rAqkAFdivkKA~k~l~n~~~  112 (250)
T KOG1150|consen   54 NPFEVLQIDPEV--TDEDIKKRYRKLSILVHPDKNPDD-AERAQKAFDIVKKAYKLLENDKI  112 (250)
T ss_pred             ChHHHHhcCCCC--CHHHHHHHHHhhheeecCCCCccc-HHHHHHHHHHHHHHHHHHhCHHH
Confidence            799999999999  999999999999999999999985 36788999999999999999873

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.8e-11  Score=80.08  Aligned_cols=67  Identities=28%  Similarity=0.377  Sum_probs=58.4

Q ss_pred             cchhhhhCCCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755            4 DEARVLLGFPPNS-RPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         4 ~d~y~iLgl~~~~-~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      .|.|.+||++.-. .+++.+|.+++++.+.+||||+..........+.|..|+.||++|+|+..|+++
T Consensus        43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qy  110 (379)
T COG5269          43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQY  110 (379)
T ss_pred             hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhc
Confidence            5889999998875 468899999999999999999985544467789999999999999999999765

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=5.6e-10  Score=71.93  Aligned_cols=54  Identities=26%  Similarity=0.368  Sum_probs=48.8

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHH-Hhc
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYT-YLL   62 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~-~L~   62 (72)
                      ..+|.||||..++  +..+++.+|..+++++|||....   ....++|.+|.+||. +|+
T Consensus        47 ~e~fril~v~e~~--~adevr~af~~lakq~hpdsgs~---~adaa~f~qideafrkvlq  101 (342)
T KOG0568|consen   47 MECFRILGVEEGA--DADEVREAFHDLAKQVHPDSGSE---EADAARFIQIDEAFRKVLQ  101 (342)
T ss_pred             HHHHHHhcccccC--chhHHHHHHHHHHHHcCCCCCCc---cccHHHHHHHHHHHHHHHH
Confidence            5789999999999  99999999999999999998877   566789999999998 554

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=8.1e-10  Score=82.45  Aligned_cols=58  Identities=28%  Similarity=0.437  Sum_probs=49.4

Q ss_pred             CcccchhhhhCCCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 035755            1 MQGDEARVLLGFPPNSR--PNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLS   63 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~--~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d   63 (72)
                      |+..+.|+||.|+-+..  -+.+.|+++|++++.+|||||+|..     .++|..+|+||+.|..
T Consensus      1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEG-----RemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEG-----REMFERVNKAYELLSS 1337 (2235)
T ss_pred             cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchH-----HHHHHHHHHHHHHHHH
Confidence            56788999999987752  1458999999999999999999753     6899999999999983

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=2.6e-09  Score=61.08  Aligned_cols=56  Identities=29%  Similarity=0.326  Sum_probs=48.6

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcCh
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSG   64 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~   64 (72)
                      |+.++.-.||||.+..  +.+.||.++|+.....|||+.++   |   ..-..||||+++|...
T Consensus        53 Msr~EA~lIL~v~~s~--~k~KikeaHrriM~~NHPD~GGS---P---YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   53 MSRREAALILGVTPSL--DKDKIKEAHRRIMLANHPDRGGS---P---YLASKINEAKDLLEGT  108 (112)
T ss_pred             cchHHHHHHhCCCccc--cHHHHHHHHHHHHHcCCCcCCCC---H---HHHHHHHHHHHHHhcc
Confidence            6677788899999999  99999999999999999999988   3   4445699999999754

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=5.4e-08  Score=59.07  Aligned_cols=70  Identities=16%  Similarity=0.156  Sum_probs=58.0

Q ss_pred             cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CCchHHHHHHHHHHHHHHHhcChhccchhc
Q 035755            2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPV---GRKTDAESKFKLISEAYTYLLSGNFHLFTF   71 (72)
Q Consensus         2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~---~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~~   71 (72)
                      +..+||.+||......+++..+...|...++++|||+...   .....+.+....+|+||.+|.||-+|.=+.
T Consensus         6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi   78 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL   78 (168)
T ss_pred             hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            4679999999988887789999999999999999999542   112357778899999999999999986543

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=97.98  E-value=1.5e-05  Score=55.43  Aligned_cols=47  Identities=34%  Similarity=0.405  Sum_probs=36.7

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCC-----chHHHHHHHHHHHHHHHhcC
Q 035755           17 RPNASQVKAAYKRKVWECHPDLFPVGR-----KTDAESKFKLISEAYTYLLS   63 (72)
Q Consensus        17 ~~~~~~ik~~yr~l~~~~hPDk~~~~~-----~~~~~~~~~~i~~Ay~~L~d   63 (72)
                      -++..+||++||+.++..||||.+...     +-.+++.|..+++||.....
T Consensus       399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~~  450 (453)
T KOG0431|consen  399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFNQ  450 (453)
T ss_pred             ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhhc
Confidence            358999999999999999999987642     23466777778888876543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=1.1e-05  Score=49.70  Aligned_cols=56  Identities=27%  Similarity=0.412  Sum_probs=47.5

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-----chHHHHHHHHHHHHHHHh
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR-----KTDAESKFKLISEAYTYL   61 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~-----~~~~~~~~~~i~~Ay~~L   61 (72)
                      .+.|.+||+...+  +..+|+++|+++....|||+.....     -..+.+.++.|++||+.+
T Consensus       113 ~~~l~~l~~~~~~--~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKA--DQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhh--hHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            5789999999999  9999999999999999999964421     245788899999999754

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=97.80  E-value=9.3e-05  Score=43.75  Aligned_cols=55  Identities=20%  Similarity=0.096  Sum_probs=37.4

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLS   63 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d   63 (72)
                      |+......||||++..  +.++|.+.|..|....+|++.++      ......|..|.+.|..
T Consensus        55 Mtl~EA~~ILnv~~~~--~~eeI~k~y~~Lf~~Nd~~kGGS------fYLQSKV~rAKErl~~  109 (127)
T PF03656_consen   55 MTLDEARQILNVKEEL--SREEIQKRYKHLFKANDPSKGGS------FYLQSKVFRAKERLEQ  109 (127)
T ss_dssp             --HHHHHHHHT--G----SHHHHHHHHHHHHHHT-CCCTS-------HHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCCCcc--CHHHHHHHHHHHHhccCCCcCCC------HHHHHHHHHHHHHHHH
Confidence            6778889999999988  99999999999999999998776      2333456666666543

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=1.3e-05  Score=49.27  Aligned_cols=66  Identities=21%  Similarity=0.269  Sum_probs=52.7

Q ss_pred             chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---chHHHHHHHHHHHHHHHhcChhccchh
Q 035755            5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR---KTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~---~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      |++..+|.++....+.+.++..|+.+.+.+|||+.....   ...+.+.+..++.||.+|.+|..|.-+
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~   70 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEY   70 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            566677777777667888999999999999999976532   223667899999999999999887543

>PF13446 RPT: A repeated domain in UCH-protein

Probab=97.12  E-value=0.0022  Score=33.09  Aligned_cols=30  Identities=27%  Similarity=0.418  Sum_probs=27.9

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHH
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVW   32 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~   32 (72)
                      |+..+.|++|||+++.  +.+.|-.+|+....
T Consensus         2 ~~~~~Ay~~Lgi~~~~--~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    2 MDVEEAYEILGIDEDT--DDDFIISAFQSKVN   31 (62)
T ss_pred             CCHHHHHHHhCcCCCC--CHHHHHHHHHHHHH
Confidence            7889999999999998  99999999998887

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=93.59  E-value=0.24  Score=28.62  Aligned_cols=47  Identities=23%  Similarity=0.371  Sum_probs=35.8

Q ss_pred             CHHHHHHHHHHHHHHhCCCCCCCC--CchHHHHHHHHHHHHHHHhcChh
Q 035755           19 NASQVKAAYKRKVWECHPDLFPVG--RKTDAESKFKLISEAYTYLLSGN   65 (72)
Q Consensus        19 ~~~~ik~~yr~l~~~~hPDk~~~~--~~~~~~~~~~~i~~Ay~~L~d~~   65 (72)
                      +..+++.+.|.+-++.|||.....  .+..-++-++.++.-.+.|..+.
T Consensus         7 ~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~   55 (112)
T PF14687_consen    7 SSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK   55 (112)
T ss_pred             hhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence            678899999999999999986643  23445566778888777777643

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=92.03  E-value=0.44  Score=30.03  Aligned_cols=38  Identities=24%  Similarity=0.317  Sum_probs=28.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhc
Q 035755           13 PPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLL   62 (72)
Q Consensus        13 ~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~   62 (72)
                      +++|  +.+||.+|..++..+|--|          ++.-..|..||+.+.
T Consensus         1 S~~A--SfeEIq~Arn~ll~~y~gd----------~~~~~~IEaAYD~IL   38 (194)
T PF11833_consen    1 SEDA--SFEEIQAARNRLLAQYAGD----------EKSREAIEAAYDAIL   38 (194)
T ss_pred             CCCC--CHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHH
Confidence            4677  9999999999999998222          244556888888654

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=91.64  E-value=0.27  Score=32.78  Aligned_cols=47  Identities=21%  Similarity=0.311  Sum_probs=37.9

Q ss_pred             CHHHHHHHHHHHHHHhCCCCCCC--CCchHHHHHHHHHHHHHHHhcChh
Q 035755           19 NASQVKAAYKRKVWECHPDLFPV--GRKTDAESKFKLISEAYTYLLSGN   65 (72)
Q Consensus        19 ~~~~ik~~yr~l~~~~hPDk~~~--~~~~~~~~~~~~i~~Ay~~L~d~~   65 (72)
                      +..+|..+|+..+...||++...  ......++.+++|.+||.++++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~   53 (335)
T KOG0724|consen    5 SEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDE   53 (335)
T ss_pred             cHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccc
Confidence            77889999999999999999752  111356677999999999999843

>KOG3442 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.34  E-value=0.74  Score=27.30  Aligned_cols=39  Identities=13%  Similarity=0.059  Sum_probs=33.3

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPV   41 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~   41 (72)
                      |+....-.||+|.+.-  +.++|.+.|..|-....+.+.++
T Consensus        56 iTlqEa~qILnV~~~l--n~eei~k~yehLFevNdkskGGS   94 (132)
T KOG3442|consen   56 ITLQEAQQILNVKEPL--NREEIEKRYEHLFEVNDKSKGGS   94 (132)
T ss_pred             ccHHHHhhHhCCCCCC--CHHHHHHHHHHHHhccCcccCcc
Confidence            4566778899999977  99999999999999987777654

>COG5552 Uncharacterized conserved protein [Function unknown]

Probab=88.04  E-value=2.9  Score=22.76  Aligned_cols=38  Identities=18%  Similarity=0.248  Sum_probs=31.8

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVG   42 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~   42 (72)
                      ++|--+++|++|-+  +..||+.+-++.++++.--..|+.
T Consensus         2 CRNIk~LfnfdPPA--T~~EvrdAAlQfVRKlSGtT~PS~   39 (88)
T COG5552           2 CRNIKELFNFDPPA--TPVEVRDAALQFVRKLSGTTHPSA   39 (88)
T ss_pred             ccchHHHhCCCCCC--CcHHHHHHHHHHHHHhcCCCCcch
Confidence            56777899999999  999999999999998866666653

>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function

Probab=85.37  E-value=4.3  Score=22.06  Aligned_cols=59  Identities=17%  Similarity=0.197  Sum_probs=40.9

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchH-HHHHHHHHHHHHHHhcC
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTD-AESKFKLISEAYTYLLS   63 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~-~~~~~~~i~~Ay~~L~d   63 (72)
                      ++|--.+.|+.|-+  +.+||..+-.+.+++..=-..|+....+ .+.....|..+-.-|.+
T Consensus         2 CRnI~~L~~fePpa--T~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~   61 (78)
T PF10041_consen    2 CRNIKTLRNFEPPA--TDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD   61 (78)
T ss_pred             CcchhhhcCCCCCC--CHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            45666778999999  9999999999999998766666532222 33334556666655544

>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional

Probab=80.08  E-value=9.1  Score=22.00  Aligned_cols=61  Identities=13%  Similarity=0.222  Sum_probs=34.6

Q ss_pred             cccchhhhhCCCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhc
Q 035755            2 QGDEARVLLGFPPNSR---PNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLL   62 (72)
Q Consensus         2 ~~~d~y~iLgl~~~~~---~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~   62 (72)
                      +.+||++.|||+-+..   +..=-|=++|.....+.+.+....++.......-..+.+||+..-
T Consensus        13 sAEdFf~ff~v~YDp~vvnV~RLHILkrf~qyl~~~~~~~~~~~e~~~~~~yr~~L~~AY~dF~   76 (105)
T PRK14102         13 DAEDYFQFFELPYDPTVVNVNRLHILKQFSQLIAEIDANFPDLSEEEKLEKYQLALEEAYQVFL   76 (105)
T ss_pred             cHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            4579999999998872   233346666666666544332222111222233346788998643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	72
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	1e-08
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-08
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	7e-08
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	1e-07
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	2e-07
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-07
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	3e-07
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	3e-07
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	5e-07
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	6e-07
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	6e-07
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	7e-07
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	1e-06
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	1e-06
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	1e-06
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	2e-06
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-06
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	3e-06
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	4e-06
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	4e-06
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	5e-06
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	5e-06
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	6e-06
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	6e-06
2guz_A	71	Mitochondrial import inner membrane translocase su	6e-06
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	6e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-06
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	1e-05
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	1e-05
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	2e-05
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-05
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	1e-04
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	1e-04
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	9e-04

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 45.7 bits (109), Expect = 1e-08
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
           AS   +K AY++   + HPD  P   K +AE +FK ++EAY  L
Sbjct: 20 QASSEAIKKAYRKLALKWHPDKNP-ENKEEAERRFKQVAEAYEVL 63

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 46.0 bits (109), Expect = 2e-08
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          LLG   ++  N   ++ AY +K  E HPD      K   E K K ++  Y  +
Sbjct: 13 LLGLERSAWGNIPLMRKAYLKKCKEFHPD------KGGDEEKMKKMNTLYKKM 59

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 44.2 bits (105), Expect = 7e-08
 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +AS   +K AY++     HPD  P   K +AE KFKL+SEAY  L
Sbjct: 20 SASPEDIKKAYRKLALRWHPDKNP-DNKEEAEKKFKLVSEAYEVL 63

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 44.0 bits (104), Expect = 1e-07
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          LLG    S  +  Q+ A +K +  ECHPD  P      A   F+ + +A   L
Sbjct: 25 LLGCDELS--SVEQILAEFKVRALECHPDKHP-ENP-KAVETFQKLQKAKEIL 73

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 43.0 bits (101), Expect = 2e-07
 Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          LL  P     +  +++ AYK++    HPD      K  + +  + ++  +   
Sbjct: 16 LLKLPRQLWGDFGRMQQAYKQQSLLLHPD------KGGSHALMQELNSLWGTF 62

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 44.5 bits (105), Expect = 2e-07
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          LLG   ++  N   ++ AY +K  E HPD      K   E K K ++  Y  +
Sbjct: 16 LLGLERSAWGNIPLMRKAYLKKCKEFHPD------KGGDEEKMKKMNTLYKKM 62

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 43.8 bits (103), Expect = 3e-07
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVG---RKTDAESKFKLISEAYTYL 61
          L G P   + +   +   ++    + HPD F  G    +  A  +   I++A+  L
Sbjct: 6  LFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 42.3 bits (100), Expect = 3e-07
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAY 58
          +AS   +K AY+RK  + HPD  P   K  AE KFK ++EAY
Sbjct: 13 SASADDIKKAYRRKALQWHPDKNP-DNKEFAEKKFKEVAEAY 53

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 42.0 bits (99), Expect = 5e-07
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          LLG P  +    +Q+KAAY R+ +  HPD    G   +A  +F  IS+AY  L
Sbjct: 22 LLGVPSTA--TQAQIKAAYYRQCFLYHPDRNS-GSA-EAAERFTRISQAYVVL 70

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 41.1 bits (97), Expect = 6e-07
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 7/53 (13%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +LG  P++  + +++K AY++   + HPD  P     D   +FK IS+AY  L
Sbjct: 13 VLGVKPDA--SDNELKKAYRKMALKFHPDKNP-----DGAEQFKQISQAYEVL 58

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 42.0 bits (99), Expect = 6e-07
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR-KTDAESKFKLISEAY 58
          +L        +  ++  AY+    + HPD       K  AE +F++I+ AY
Sbjct: 20 VLEVNREE-FDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAY 69

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 41.3 bits (97), Expect = 1e-06
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFP----VGRKTDAESKFKLISEAYTYL 61
          +LG  P++  N S +K  Y++ +   HPD        G   +   KF  I +A+  L
Sbjct: 21 ILGADPSA--NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 40.8 bits (96), Expect = 1e-06
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +AS+  +K A+ +   + HPD        DAE+KF+ I+EAY  L
Sbjct: 18 SASERQIKKAFHKLAMKYHPDKNK---SPDAEAKFREIAEAYETL 59

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 40.3 bits (95), Expect = 1e-06
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
           LG    +  +  ++K AY+R+    HPD      +  AE KFK I+EAY  L
Sbjct: 8  TLGLARGA--SDEEIKRAYRRQALRYHPDKNK---EPGAEEKFKEIAEAYDVL 55

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 40.5 bits (95), Expect = 2e-06
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          +LG  P +  +  +V  AY++     HPD         +E  FK +  A T L
Sbjct: 32 MLGVKPGA--SRDEVNKAYRKLAVLLHPD---KCVAPGSEDAFKAVVNARTAL 79

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 41.8 bits (97), Expect = 2e-06
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 19  NASQVKAAYKRKVWECHPDLFP-VGRKTDAESKFKLISEAYTYL 61
              QVK  Y++ V   HPD       +  A+  F  +++A++  
Sbjct: 130 TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEF 173

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 39.5 bits (93), Expect = 3e-06
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          NASQ  +K AY +   + HPD         A+ KF  ++EAY  L
Sbjct: 18 NASQKEIKKAYYQLAKKYHPDTNK-DDP-KAKEKFSQLAEAYEVL 60

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 39.6 bits (93), Expect = 4e-06
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          LLG  P++  N  ++K  Y++   + HPD     + T    KFK ISEA+  L
Sbjct: 13 LLGVSPSA--NEQELKKGYRKAALKYHPD-----KPTGDTEKFKEISEAFEIL 58

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 41.1 bits (97), Expect = 4e-06
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 18 PNASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAY 58
          P      +K AY+R   + HPD+     + DAE+KFK ++EA+
Sbjct: 38 PTDDLKTIKTAYRRLARKYHPDVSK---ENDAEAKFKDLAEAW 77

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 40.6 bits (95), Expect = 5e-06
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 18 PNASQ--VKAAYKRKVWECHPDLFP----VGRKTDAESKFKLISEAYTYL 61
          P+A+   +K  Y++ +   HPD        G   +   KF  I +A+  L
Sbjct: 20 PSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 39.6 bits (92), Expect = 5e-06
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 19 NASQVKAAYKRKVWECHPDLFP-VGRKTDAESKFKLISEAYT 59
             QVK  Y++ V   HP        +  A+  F  +++A++
Sbjct: 46 TPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWS 87

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 39.5 bits (93), Expect = 6e-06
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 19 NASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
             +++ AYKR   + HPD    G K +AE+KFK I EAY  L
Sbjct: 16 EEREIRKAYKRLAMKYHPDRNQ-GDK-EAEAKFKEIKEAYEVL 56

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 38.9 bits (91), Expect = 6e-06
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
           ASQ  +K AYK+   E HPD     +   AE +F  IS+AY  L
Sbjct: 28 TASQADIKKAYKKLAREWHPD---KNKDPGAEDRFIQISKAYEIL 69

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 38.5 bits (90), Expect = 6e-06
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 1  MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTY 60
          M   EA  +L    N+     ++K  +++ +   HPD      K  +      I+EA  +
Sbjct: 11 MNSKEALQILNLTENT-LTKKKLKEVHRKIMLANHPD------KGGSPFLATKINEAKDF 63

Query: 61 LL 62
          L 
Sbjct: 64 LE 65

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 38.9 bits (91), Expect = 6e-06
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          ++          S+ K   +R   + HPD  P      A   FK +      L
Sbjct: 21 VVEQAWKL--PESERKKIIRRLYLKWHPDKNP-ENHDIANEVFKHLQNEINRL 70

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 40.1 bits (94), Expect = 9e-06
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 10  LGFPPNSRPNASQVKAAYKRKVWECHPDLFPV-GRKTDAESKFKLISEAYTYL 61
           LG   N      ++  AY++   + HPD F     K  AE KF  I+ A   L
Sbjct: 388 LGVKRN--AKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 38.0 bits (89), Expect = 1e-05
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 5/45 (11%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
           AS   +K AY+R   + HPD         A   FK I  AY  L
Sbjct: 18 GASDEDLKKAYRRLALKFHPDKNH---APGATEAFKAIGTAYAVL 59

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 38.5 bits (90), Expect = 1e-05
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          NA+   +K +Y++   + HPD  P     +A  KFK I+ A+  L
Sbjct: 28 NATSDDIKKSYRKLALKYHPDKNP-DNP-EAADKFKEINNAHAIL 70

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 38.1 bits (88), Expect = 2e-05
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 19  NASQVKAAYKRKVWECHPDLFPVG-----RKTDAESKFKLISEAYTYLLSGN 65
             + V+ +Y+R +   HPD          +K  AE  F+L+ EA+ +  +  
Sbjct: 53  EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 38.7 bits (90), Expect = 3e-05
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 19 NASQ--VKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
           AS   ++ A+K+   + HPD  P     +A   F  I+ AY  L
Sbjct: 13 TASSREIRQAFKKLALKLHPDKNP-NNP-NAHGDFLKINRAYEVL 55

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 37.0 bits (85), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 9   LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVG---RKTDAESKFKLISEAYTYL 61
           L+    + R + ++++  Y++     HPD F       K  +E    L+++AY  L
Sbjct: 48  LMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTL 103

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 36.9 bits (85), Expect = 1e-04
 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 13 PPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
           P    + S+++  Y++   + HPD+           +   +++AY  L
Sbjct: 25 LPIWTIDQSRLRKEYRQLQAQHHPDMAQ-----QGSEQSSTLNQAYHTL 68

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 34.7 bits (79), Expect = 9e-04
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFH 67
          LLG    +  ++ +++ A+K+   + HPD  P     +A   F  I+ AY  L   +  
Sbjct: 26 LLGVSKTA--SSREIRQAFKKLALKLHPDKNP--NNPNAHGDFLKINRAYEVLKDEDLR 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.9
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.9
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.9
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.9
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.9
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.89
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.89
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.89
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.89
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.88
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.88
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.88
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.88
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.88
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.87
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.87
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.87
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.86
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.86
2guz_A	71	Mitochondrial import inner membrane translocase su	99.85
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.85
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.85
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.84
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.84
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.83
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.83
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.82
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.82
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.81
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.8
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.78
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.75
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.71
2guz_B	65	Mitochondrial import inner membrane translocase su	99.5
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.33
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	93.37

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=3.8e-24  Score=115.77  Aligned_cols=65  Identities=26%  Similarity=0.334  Sum_probs=59.4

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      +...|+|+||||++++  +..+|+++|+++++++|||+++..  +.+.+.|+.|++||++|+||.+|.-
T Consensus         4 ~~~~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~   68 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNA--SQKEIKKAYYQLAKKYHPDTNKDD--PKAKEKFSQLAEAYEVLSDEVKRKQ   68 (79)
T ss_dssp             SCCSCHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCSSC--TTHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             CCCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--HHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            3568999999999999  999999999999999999999864  5788999999999999999998843

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=5.1e-24  Score=119.75  Aligned_cols=65  Identities=32%  Similarity=0.440  Sum_probs=59.8

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      |+..|||+||||++++  +.++|+++||++++++|||+++.+  +.+.+.|+.|++||++|+||.+|.-
T Consensus        14 ~~~~~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~   78 (99)
T 2yua_A           14 YSRTALYDLLGVPSTA--TQAQIKAAYYRQCFLYHPDRNSGS--AEAAERFTRISQAYVVLGSATLRRK   78 (99)
T ss_dssp             SCSSHHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTCSSC--SHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             CCccCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--HHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            4578999999999999  999999999999999999999864  6789999999999999999998843

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=3.7e-24  Score=118.63  Aligned_cols=62  Identities=26%  Similarity=0.352  Sum_probs=57.7

Q ss_pred             cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      ...|+|+||||++++  +.++||++||++++++|||+++.   +.+.+.|+.|++||++|+||.+|.
T Consensus        25 ~~~~~y~iLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGA--SRDEVNKAYRKLAVLLHPDKCVA---PGSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             TCSSHHHHHTCCTTC--CHHHHHHHHHHHHHHHCTTTCCC---TTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             cCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCccccc
Confidence            357999999999999  99999999999999999999987   567889999999999999999885

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=6.1e-24  Score=114.78  Aligned_cols=64  Identities=25%  Similarity=0.325  Sum_probs=59.2

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      ++..|+|+||||++++  +..+|+++|+++++++|||+++.   +.+.+.|+.|++||++|+||.+|.-
T Consensus         4 ~~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~   67 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGA--SDEDLKKAYRRLALKFHPDKNHA---PGATEAFKAIGTAYAVLSNPEKRKQ   67 (78)
T ss_dssp             SCSCCHHHHHTCCTTC--CHHHHHHHHHHHHTTSCTTTCSS---HHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             CCCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHHHHHH
Confidence            3568999999999999  99999999999999999999987   7889999999999999999998843

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=1.4e-23  Score=115.77  Aligned_cols=63  Identities=32%  Similarity=0.439  Sum_probs=58.8

Q ss_pred             cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      +..|||+||||++++  +.++|+++|+++++++|||+++.   +.+.+.|+.|++||++|+||.+|.-
T Consensus         5 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~   67 (88)
T 2ctr_A            5 SSGSYYDILGVPKSA--SERQIKKAFHKLAMKYHPDKNKS---PDAEAKFREIAEAYETLSDANRRKE   67 (88)
T ss_dssp             CCCSHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCCS---HHHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred             CCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            467999999999999  99999999999999999999986   7889999999999999999998843

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.89  E-value=1.3e-23  Score=113.23  Aligned_cols=62  Identities=32%  Similarity=0.459  Sum_probs=57.4

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      ..|+|+||||++++  +.++|+++|+++++++|||+++.   +.+.+.|+.|++||++|+||.+|.-
T Consensus         2 ~~~~y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~   63 (77)
T 1hdj_A            2 GKDYYQTLGLARGA--SDEEIKRAYRRQALRYHPDKNKE---PGAEEKFKEIAEAYDVLSDPRKREI   63 (77)
T ss_dssp             CCCSHHHHTCCTTC--CHHHHHHHHHHHHHTTCTTTCCC---TTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHHHHHH
Confidence            46999999999999  99999999999999999999987   5688999999999999999998843

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=2.2e-23  Score=119.41  Aligned_cols=63  Identities=27%  Similarity=0.413  Sum_probs=58.4

Q ss_pred             cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      ...|||+||||++++  +.++||++||++++++|||+++++  +.+++.|+.|++||++|+||.+|.
T Consensus        18 ~~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~vL~d~~~R~   80 (112)
T 2ctq_A           18 DTEDYYTLLGCDELS--SVEQILAEFKVRALECHPDKHPEN--PKAVETFQKLQKAKEILTNEESRA   80 (112)
T ss_dssp             CCCCHHHHTTCCTTS--CHHHHHHHHHHHHHTTCTTTCTTC--STHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHCCHHHHH
Confidence            358999999999999  999999999999999999999864  578999999999999999999884

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.89  E-value=6.8e-24  Score=117.92  Aligned_cols=66  Identities=23%  Similarity=0.311  Sum_probs=59.1

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC----CchHHHHHHHHHHHHHHHhcChhccc
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVG----RKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~----~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      |+..|+|+||||++++  +..+||++|+++++++|||+++..    ..+.+.+.|+.|++||++|+||.+|.
T Consensus        13 ~~~~~~y~iLgv~~~a--s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~   82 (94)
T 1wjz_A           13 TLKKDWYSILGADPSA--NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK   82 (94)
T ss_dssp             SSCSCHHHHTTCCTTC--CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred             CCCCChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            4568999999999999  999999999999999999998742    23578899999999999999999884

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.89  E-value=4.2e-23  Score=117.80  Aligned_cols=64  Identities=27%  Similarity=0.437  Sum_probs=59.2

Q ss_pred             cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      ...|+|+||||++++  +.++||++|+++++++|||+++.+  +.+.+.|+.|++||++|+||.+|.-
T Consensus        15 ~~~~~Y~vLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~--~~a~~~f~~i~~Ay~vL~d~~~R~~   78 (109)
T 2ctw_A           15 SGESLYHVLGLDKNA--TSDDIKKSYRKLALKYHPDKNPDN--PEAADKFKEINNAHAILTDATKRNI   78 (109)
T ss_dssp             CSCCHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTSTTC--HHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            457999999999999  999999999999999999999875  7889999999999999999998853

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=3.9e-23  Score=113.93  Aligned_cols=61  Identities=30%  Similarity=0.384  Sum_probs=57.3

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      ..|||+||||++++  +..+|+++||++++++|||+++.   +.+++.|+.|++||++|+||.+|.
T Consensus        16 ~~d~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~   76 (88)
T 2cug_A           16 DFDPYRVLGVSRTA--SQADIKKAYKKLAREWHPDKNKD---PGAEDRFIQISKAYEILSNEEKRT   76 (88)
T ss_dssp             SSCHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTCCS---TTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHHCCHHHHH
Confidence            57999999999999  99999999999999999999987   568899999999999999999884

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=5.3e-23  Score=111.90  Aligned_cols=63  Identities=29%  Similarity=0.434  Sum_probs=57.8

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      ..|+|+||||++++  +.++|+++|+++++++|||+++.. .+.+++.|+.|++||++|+||.+|.
T Consensus         8 ~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~d~~~R~   70 (82)
T 2ej7_A            8 MVDYYEVLDVPRQA--SSEAIKKAYRKLALKWHPDKNPEN-KEEAERRFKQVAEAYEVLSDAKKRD   70 (82)
T ss_dssp             SCCHHHHTTCCTTC--CHHHHHHHHHHHHTTSCTTTCSTT-HHHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred             CcCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            47999999999999  999999999999999999998764 3478899999999999999999884

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.88  E-value=1.3e-22  Score=108.38  Aligned_cols=60  Identities=30%  Similarity=0.486  Sum_probs=55.2

Q ss_pred             cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      ...|||+||||++++  +..+|+++|+++++++|||++++.     .+.|+.|++||++|+||.+|.
T Consensus         6 ~~~~~y~iLgl~~~a--~~~eIk~ayr~l~~~~HPD~~~~~-----~~~f~~i~~Ay~~L~d~~~R~   65 (73)
T 2och_A            6 KETGYYDVLGVKPDA--SDNELKKAYRKMALKFHPDKNPDG-----AEQFKQISQAYEVLSDEKKRQ   65 (73)
T ss_dssp             CCCCHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCTTC-----HHHHHHHHHHHHHHTSHHHHH
T ss_pred             CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCcCH-----HHHHHHHHHHHHHHCCHHHHH
Confidence            457999999999999  999999999999999999998763     478999999999999999884

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.88  E-value=1.5e-22  Score=113.96  Aligned_cols=63  Identities=35%  Similarity=0.474  Sum_probs=57.7

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      .|||+||||++++  +.++||++|+++++++|||+++.. .+.+++.|+.|++||++|+||.+|.-
T Consensus         2 ~d~Y~iLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~-~~~a~~~f~~I~~AY~vL~d~~~R~~   64 (99)
T 2lgw_A            2 ASYYEILDVPRSA--SADDIKKAYRRKALQWHPDKNPDN-KEFAEKKFKEVAEAYEVLSDKHKREI   64 (99)
T ss_dssp             CCHHHHSSSCTTS--CHHHHHHHHHHHHHHTSTTTCCSC-CHHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCcc-HHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            5899999999999  999999999999999999998764 35788999999999999999998843

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=1e-22  Score=112.90  Aligned_cols=64  Identities=33%  Similarity=0.483  Sum_probs=58.3

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      ..|||+||||++++  +..+|+++|+++++++|||+++.. .+.+++.|+.|++||++|+||.+|.-
T Consensus         8 ~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~   71 (92)
T 2dmx_A            8 MANYYEVLGVQASA--SPEDIKKAYRKLALRWHPDKNPDN-KEEAEKKFKLVSEAYEVLSDSKKRSL   71 (92)
T ss_dssp             CCCHHHHHTCCTTC--CTTHHHHHHHHHHHHTCTTTCSSC-SHHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             CcCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCcc-HHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            47999999999999  999999999999999999998764 25789999999999999999998843

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.1e-22  Score=111.83  Aligned_cols=61  Identities=30%  Similarity=0.422  Sum_probs=55.8

Q ss_pred             cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      ...|+|+||||++++  +.++|+++|+++++++|||+++.+     .+.|+.|++||++|+||.+|.-
T Consensus         6 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~-----~~~f~~i~~Ay~~L~d~~~R~~   66 (92)
T 2o37_A            6 KETKLYDLLGVSPSA--NEQELKKGYRKAALKYHPDKPTGD-----TEKFKEISEAFEILNDPQKREI   66 (92)
T ss_dssp             SCCHHHHHHTCCTTC--CHHHHHHHHHHHHHHHCTTSTTCC-----HHHHHHHHHHHHHHTSHHHHHH
T ss_pred             cCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCh-----HHHHHHHHHHHHHHCCHHHHHH
Confidence            568999999999999  999999999999999999999764     3689999999999999998853

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.87  E-value=5.4e-23  Score=113.76  Aligned_cols=64  Identities=20%  Similarity=0.151  Sum_probs=57.4

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhcc
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFH   67 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R   67 (72)
                      ++..++|+||||++++  +.++||++||++++++|||+++++ .+.++++|+.|++||++|++...|
T Consensus        13 ~~~~~~y~vLgv~~~a--s~~eIKkaYrkla~~~HPDk~~~~-~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           13 SILKEVTSVVEQAWKL--PESERKKIIRRLYLKWHPDKNPEN-HDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             SCHHHHHHHHHHTTSS--CSHHHHHHHHHHHHHTCTTTSSSC-HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc-hHHHHHHHHHHHHHHHHHHhhccc
Confidence            3568999999999999  999999999999999999998874 256899999999999999997655

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.87  E-value=3.4e-22  Score=119.62  Aligned_cols=68  Identities=24%  Similarity=0.297  Sum_probs=59.7

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC----chHHHHHHHHHHHHHHHhcChhccchh
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR----KTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~----~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      |...|||+||||++++  +.++||++||++++++|||+++...    +..+.+.|..|++||++|+||.+|.-+
T Consensus         7 ~~~~~~y~iLgv~~~a--~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Y   78 (155)
T 2l6l_A            7 MPKKDWYSILGADPSA--NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREY   78 (155)
T ss_dssp             CCCSHHHHHHTCCTTC--CHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHH
T ss_pred             CCCCChhHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3567999999999999  9999999999999999999987642    235789999999999999999988543

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.86  E-value=6.6e-23  Score=115.84  Aligned_cols=63  Identities=30%  Similarity=0.424  Sum_probs=57.9

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      ..|+|+||||++++  +.++||++||++++++|||+++..  +.+++.|+.|++||++|+||.+|.-
T Consensus         2 ~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~   64 (103)
T 1bq0_A            2 KQDYYEILGVSKTA--EEREIRKAYKRLAMKYHPDRNQGD--KEAEAKFKEIKEAYEVLTDSQKRAA   64 (103)
T ss_dssp             CCCSTTTTSSCSSC--CHHHHHHHHHHHHTTTCTTTCTTT--CTHHHHHHHHTTTTTSTTCSHHHHH
T ss_pred             CCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            47999999999999  999999999999999999999864  5688999999999999999998843

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.85  E-value=8.7e-22  Score=104.94  Aligned_cols=59  Identities=20%  Similarity=0.208  Sum_probs=53.2

Q ss_pred             CcccchhhhhCCCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhcc
Q 035755            1 MQGDEARVLLGFPP-NSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFH   67 (72)
Q Consensus         1 ~~~~d~y~iLgl~~-~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R   67 (72)
                      |+..++|+||||++ ++  +.++|+++||++++++|||++++      .+.|++|++||++|+++..|
T Consensus        11 m~~~~~y~iLgl~~~~a--~~~eIk~ayr~l~~~~HPDk~g~------~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           11 MNSKEALQILNLTENTL--TKKKLKEVHRKIMLANHPDKGGS------PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             CCHHHHHHHTTCCTTTC--CHHHHHHHHHHHHHHHCGGGTCC------HHHHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHcCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC------HHHHHHHHHHHHHHhhhhhc
Confidence            66789999999999 68  99999999999999999999654      36899999999999998765

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.85  E-value=7.8e-22  Score=107.07  Aligned_cols=58  Identities=17%  Similarity=0.284  Sum_probs=53.2

Q ss_pred             ccchhhhhCCCCC--CCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            3 GDEARVLLGFPPN--SRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         3 ~~d~y~iLgl~~~--~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      ..++|+||||+++  +  +..+||++||++++++|||++++      .++|++|++||++|+++.+|.
T Consensus        10 ~~~~y~iLgl~~~~~a--~~~eIk~aYr~la~~~HPDk~~~------~~~f~~i~~AYe~L~~~~~r~   69 (79)
T 1faf_A           10 KERLLELLKLPRQLWG--DFGRMQQAYKQQSLLLHPDKGGS------HALMQELNSLWGTFKTEVYNL   69 (79)
T ss_dssp             HHHHHHHHTCCSSSTT--CHHHHHHHHHHHHHHSSGGGSCC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC------HHHHHHHHHHHHHHhhHHHHH
Confidence            4689999999999  8  99999999999999999999765      478999999999999998774

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.85  E-value=1.4e-21  Score=120.19  Aligned_cols=61  Identities=25%  Similarity=0.431  Sum_probs=57.3

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      .|||+||||++++  +.++||++||++++++|||+++.+  +.+.++|+.|++||++|+||.+|.
T Consensus         2 ~~~y~~l~~~~~a--~~~~ik~ay~~l~~~~HPD~~~~~--~~~~~~f~~i~~Ay~~L~~~~~r~   62 (210)
T 3apq_A            2 QNFYSLLGVSKTA--SSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDLRK   62 (210)
T ss_dssp             CCHHHHHTCCTTC--CHHHHHHHHHHHHHHHCGGGCTTC--TTHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhCCHHHHH
Confidence            6899999999999  999999999999999999999865  678899999999999999999884

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.84  E-value=1.6e-21  Score=111.06  Aligned_cols=66  Identities=21%  Similarity=0.267  Sum_probs=58.6

Q ss_pred             cccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            2 QGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPV-GRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         2 ~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~-~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      ...|+|+||||++++ ++.++|+++||++++++|||++++ ...+.+.+.|+.|++||++|+||.+|.
T Consensus        13 ~~~~~y~iLgv~~~a-~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~   79 (109)
T 2qsa_A           13 GLENCYDVLEVNREE-FDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKT   79 (109)
T ss_dssp             TTSCHHHHTTCCGGG-CCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCCHHHHcCCCCCC-CCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            357999999999984 599999999999999999999885 334678999999999999999999884

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.84  E-value=2.1e-21  Score=118.12  Aligned_cols=66  Identities=18%  Similarity=0.267  Sum_probs=58.5

Q ss_pred             chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---chHHHHHHHHHHHHHHHhcChhccchh
Q 035755            5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR---KTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~---~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      |||+||||++++.++..+|+++||++++++|||++++..   +..+.+.|..|++||++|+||.+|.-+
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Y   70 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEY   70 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            899999999998889999999999999999999988742   234678999999999999999999543

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.83  E-value=3.9e-21  Score=119.97  Aligned_cols=68  Identities=21%  Similarity=0.265  Sum_probs=58.6

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---chHHHHHHHHHHHHHHHhcChhccchh
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR---KTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~---~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      ..|||+||||++++.++..+|+++||++++++|||++++..   +..+.+.|..|++||++|+||.+|.-+
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Y  112 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLY  112 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            46899999999985459999999999999999999988642   234778999999999999999999544

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.83  E-value=3.4e-22  Score=131.57  Aligned_cols=64  Identities=31%  Similarity=0.467  Sum_probs=0.0

Q ss_pred             CcccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            1 MQGDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      |+.+|||+||||++++  +.++||++||++++++|||+++.   +.++++|++|++||++|+||.+|.-
T Consensus        25 m~~~d~Y~vLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~---~~a~~~f~~i~~Ay~vL~d~~~R~~   88 (329)
T 3lz8_A           25 MELKDYYAILGVQPTD--DLKTIKTAYRRLARKYHPDVSKE---NDAEAKFKDLAEAWEVLKDEQRRAE   88 (329)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             ccccCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCCCCCCC---hHHHHHHHHHHHHHHHhhhhhhhcc
Confidence            5678999999999999  99999999999999999999886   5788999999999999999998853

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.82  E-value=9.6e-22  Score=113.13  Aligned_cols=59  Identities=25%  Similarity=0.254  Sum_probs=53.9

Q ss_pred             ccchhhhhCCCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNA--SQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~--~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      ..++|+||||++++  +.  .+||++||++++++|||+++.      .++|++|++||++|+||.+|.-
T Consensus         7 ~~~~Y~iLgv~~~a--s~~~~eIk~aYr~la~~~HPDk~~~------~e~f~~I~~AYevL~d~~~R~~   67 (114)
T 1gh6_A            7 SLQLMDLLGLERSA--WGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGVKYAH   67 (114)
T ss_dssp             HHHHHHHTTCCTTS--CSCHHHHHHHHHHTTTTCCTTTCCT------TTTTHHHHHHHHHHHHHHHSCC
T ss_pred             hhhHHHHcCCCCCC--CcCHHHHHHHHHHHHHHHCCCCCcc------HHHHHHHHHHHHHHCCHHHHHH
Confidence            46899999999999  77  999999999999999999876      3789999999999999998853

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.82  E-value=8e-21  Score=116.62  Aligned_cols=64  Identities=19%  Similarity=0.218  Sum_probs=57.5

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHHHHhcChhccch
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRK-TDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~-~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      .|+|+||||++++  +..+||++||++++++|||++++... ..+++.|+.|++||++|+|+.+|.-
T Consensus       117 ~d~Y~vLgv~~~A--s~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~  181 (182)
T 1n4c_A          117 ETKWKPVGMADLV--TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPL  181 (182)
T ss_dssp             CCCCCCCCGGGGS--SHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cchhhcCCCCCCC--CHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhh
Confidence            6899999999999  99999999999999999999876422 2488999999999999999999864

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.81  E-value=7.9e-21  Score=105.77  Aligned_cols=58  Identities=19%  Similarity=0.212  Sum_probs=52.1

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHHHHhcC
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRK-TDAESKFKLISEAYTYLLS   63 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~-~~~~~~~~~i~~Ay~~L~d   63 (72)
                      .++|++|||++.+  +..+||++||++++++|||+++++.. ..++++|+.|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~a--s~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLV--TPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSS--SHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            4899999999999  99999999999999999999987532 3588999999999999975

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.80  E-value=7.8e-21  Score=108.12  Aligned_cols=60  Identities=23%  Similarity=0.288  Sum_probs=52.1

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-----chHHHHHHHHHHHHHHHhcChh
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR-----KTDAESKFKLISEAYTYLLSGN   65 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~-----~~~~~~~~~~i~~Ay~~L~d~~   65 (72)
                      ..|||+|||++. +  +..+||++||++++++|||+++...     +..++++|+.|++||++|+|+.
T Consensus        40 ~~d~Y~vl~~~~-A--s~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM-I--EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS-C--SHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC-C--CHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            369999999996 7  9999999999999999999976311     2257899999999999999986

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.78  E-value=2.1e-20  Score=114.07  Aligned_cols=60  Identities=25%  Similarity=0.242  Sum_probs=50.7

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      ..|+|+||||++++..+.++||++||++++++|||++++.      ++|++|++||++|+||.+|.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~------e~F~~I~~AYevLsdp~kR~   69 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE------EKMKKMNTLYKKMEDGVKYA   69 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC------TTTTHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH------HHHHHHHHHHHHhCCHHHHH
Confidence            4789999999999922279999999999999999998763      68999999999999999884

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.75  E-value=1.6e-19  Score=110.76  Aligned_cols=61  Identities=16%  Similarity=0.201  Sum_probs=53.5

Q ss_pred             ccchhhhh------CCCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccchh
Q 035755            3 GDEARVLL------GFPP-NSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         3 ~~d~y~iL------gl~~-~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      ..|||+||      |+++ ++  +..+|+++||++++++|||++++     +.+.|..|++||++|+||.+|.-+
T Consensus        10 ~~d~y~ll~~~~p~~~~~~~a--~~~eIk~aYr~la~~~HPDk~~~-----a~~~f~~i~~AY~vL~dp~~R~~Y   77 (181)
T 3uo3_A           10 TSTFYELFPKTFPKKLPIWTI--DQSRLRKEYRQLQAQHHPDMAQQ-----GSEQSSTLNQAYHTLKDPLRRSQY   77 (181)
T ss_dssp             SCCTGGGCTTTCTTCSCCSCC--CHHHHHHHHHHHHHTCCTTSCCS-----CSSGGGSHHHHHHHHHSHHHHHHH
T ss_pred             CCCHHHHhccccccCCCCCCC--CHHHHHHHHHHHHHHhCcCCCcc-----HHHHHHHHHHHHHHHcChHHHHHH
Confidence            47999999      4665 56  99999999999999999999875     357899999999999999998654

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.71  E-value=7.9e-19  Score=123.62  Aligned_cols=63  Identities=24%  Similarity=0.400  Sum_probs=35.3

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      ..|||+||||++++  +.++||++||++++++|||+++++  +.+.++|+.|++||++|+||.+|.-
T Consensus        20 ~~~~y~~lg~~~~a--~~~~i~~ay~~l~~~~hpd~~~~~--~~~~~~f~~i~~ay~~L~~~~~r~~   82 (780)
T 3apo_A           20 DQNFYSLLGVSKTA--SSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDLRKK   82 (780)
T ss_dssp             ---CHHHHTCCTTC--CHHHHHHHHCC-------------------------CTHHHHHHSHHHHHH
T ss_pred             CCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHHcChHHHHH
Confidence            47999999999999  999999999999999999999764  6788999999999999999998843

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.50  E-value=4.8e-14  Score=73.86  Aligned_cols=56  Identities=13%  Similarity=-0.048  Sum_probs=49.7

Q ss_pred             CcccchhhhhCCCCC---CCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcCh
Q 035755            1 MQGDEARVLLGFPPN---SRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSG   64 (72)
Q Consensus         1 ~~~~d~y~iLgl~~~---~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~   64 (72)
                      |+..+.|.||||+++   +  +.++|+++||++...+|||+.++      ......|++|.++|...
T Consensus         1 mt~~EA~~ILgv~~~~~~a--~~~~Ik~~yr~Lm~~nhPDkGGS------~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            1 MTLDESCKILNIEESKGDL--NMDKINNRFNYLFEVNDKEKGGS------FYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             CCHHHHHHHTTCCGGGTCC--SHHHHHHHHHHHHHHTCGGGTCC------HHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhCCCCCcCcC--CHHHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHHHHHH
Confidence            788899999999999   8  99999999999999999999776      36667899999998643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.33  E-value=1.1e-12  Score=85.04  Aligned_cols=65  Identities=26%  Similarity=0.330  Sum_probs=56.4

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-chHHHHHHHHHHHHHHHhcChhccchh
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR-KTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~-~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      .++|.+||+..++  +..+|+++|+++++++|||+.+... +..+++.|+.|++||++|+||.+|..+
T Consensus       382 ~~~y~~lg~~~~~--~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~y  447 (450)
T 2y4t_A          382 RDYYKILGVKRNA--KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKF  447 (450)
T ss_dssp             CCSGGGSCSSTTC--CTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC---
T ss_pred             hhHHHHhCCCccC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhc
Confidence            4899999999999  9999999999999999999987632 356889999999999999999998543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=93.37  E-value=0.049  Score=38.02  Aligned_cols=45  Identities=20%  Similarity=0.324  Sum_probs=34.1

Q ss_pred             cchhhhhCCCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHH
Q 035755            4 DEARVLLGFPPNSRPNA--SQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTY   60 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~--~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~   60 (72)
                      .|+|.+||++...  ..  .+|+++||++++..+++          .+++..|..|..|
T Consensus       629 ~~~~~~lG~~~~~--~~lr~~~~~ayr~la~~~~~~----------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          629 ASTNHILGFPFTS--HGLRLGVEASLRSLARVAPTQ----------RHRYTLVDMANKV  675 (681)
T ss_dssp             CSSSEETTEESSH--HHHHHHHHHHHHHHHHHCSSH----------HHHHHHHHHHHHH
T ss_pred             CCCcccCCCCCCh--HHHHHHHHHHHHHHHHhCCCh----------HHHHHHHHHhccc
Confidence            5689999997655  44  66999999999976444          3677788888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	72
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-06
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	4e-05
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	0.001
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	0.003

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 39.6 bits (92), Expect = 1e-06
 Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYL 61
          LL  P     +  +++ AYK++    HPD         + +  + ++  +   
Sbjct: 16 LLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG------SHALMQELNSLWGTF 62

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (82), Expect = 4e-05
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAES---KFKLISEAYTYL 61
          L G P   + +   +   ++    + HPD F  G + +  +   +   I++A+  L
Sbjct: 6  LFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 32.6 bits (74), Expect = 0.001
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 20 ASQVKAAYKRKVWECHPDLFP-VGRKTDAESKFKLISEAYTYL 61
            QVK  Y++ V   HPD       +  A+  F  +++A++  
Sbjct: 47 PEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEF 89

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.2 bits (70), Expect = 0.003
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 9  LLGFPPNSRPNASQVKAAYKRKVWECHP----DLFPVGRKTDAESKFKLISEAYTYL 61
          +LG  P++  N S +K  Y++ +   HP       P G   +   KF  I +A+  L
Sbjct: 21 ILGADPSA--NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	72
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.92
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.89
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.88
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.88
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.86
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.83
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.8

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=6.2e-26  Score=121.03  Aligned_cols=63  Identities=30%  Similarity=0.424  Sum_probs=58.3

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccch
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      .+|||+||||++++  |.++|+++|+++++++|||+++++  +.+++.|..|++||+||+||.+|..
T Consensus         2 k~dyY~vLgv~~~A--s~~eIk~aYr~l~~~~HPDk~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~   64 (75)
T d1xbla_           2 KQDYYEILGVSKTA--EEREIRKAYKRLAMKYHPDRNQGD--KEAEAKFKEIKEAYEVLTDSQKRAA   64 (75)
T ss_dssp             CCCTTTTTCCSSSC--CHHHHHHHHHHHHHHTCCTTCTTT--CHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred             CCCHHHHcCCCCCc--CHHHHHHHHHHHHhhhhhhccCCC--hHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            47999999999999  999999999999999999999875  6788899999999999999998843

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6e-24  Score=113.66  Aligned_cols=61  Identities=33%  Similarity=0.461  Sum_probs=57.1

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      .+|||+||||++++  +.++|+++|+++++++|||+++.   +.+.+.|..|++||++|+||.+|.
T Consensus         2 ~kdyY~iLgv~~~a--s~~eIk~ay~~l~~~~hPD~~~~---~~~~~~~~~i~~Ay~vLsdp~~R~   62 (77)
T d1hdja_           2 GKDYYQTLGLARGA--SDEEIKRAYRRQALRYHPDKNKE---PGAEEKFKEIAEAYDVLSDPRKRE   62 (77)
T ss_dssp             CCCSHHHHTCCTTC--CHHHHHHHHHHHHHTTCTTTCCC---TTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCChHHHcCCCCCc--CHHHHHHHHHHHHHHhccccccc---hhHHHHHHHHHHHHHHhcCHHHHH
Confidence            47999999999999  99999999999999999999887   567889999999999999999884

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.1e-24  Score=119.31  Aligned_cols=66  Identities=23%  Similarity=0.287  Sum_probs=58.7

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC----chHHHHHHHHHHHHHHHhcChhccchh
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR----KTDAESKFKLISEAYTYLLSGNFHLFT   70 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~----~~~~~~~~~~i~~Ay~~L~d~~~R~~~   70 (72)
                      .+|||+||||++++  +.++|+++|+++++++|||+++...    .+.+++.|+.|++||++|+||.+|..+
T Consensus        15 ~~d~Y~iLgv~~~a--s~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~Y   84 (94)
T d1wjza_          15 KKDWYSILGADPSA--NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKY   84 (94)
T ss_dssp             CSCHHHHTTCCTTC--CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHH
T ss_pred             ccChHHHcCCCCCc--CHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            47999999999999  9999999999999999999987642    356888999999999999999988543

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.88  E-value=3.1e-24  Score=122.00  Aligned_cols=60  Identities=25%  Similarity=0.242  Sum_probs=54.8

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      ..|+|+||||+.+|..+.++||++||++++++|||++++.      ++|+.|++||+||+||.+|.
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~------e~F~~I~~AY~vLsd~~kR~   66 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE------EKMKKMNTLYKKMEDGVKYA   66 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT------TTTHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH------HHHHHHHHHHHHhCCHHHHH
Confidence            4689999999999966789999999999999999998863      57999999999999998885

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2.5e-23  Score=110.85  Aligned_cols=67  Identities=18%  Similarity=0.273  Sum_probs=58.1

Q ss_pred             chhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC---chHHHHHHHHHHHHHHHhcChhccchhc
Q 035755            5 EARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR---KTDAESKFKLISEAYTYLLSGNFHLFTF   71 (72)
Q Consensus         5 d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~---~~~~~~~~~~i~~Ay~~L~d~~~R~~~~   71 (72)
                      |||+||||++++.++.++|+++|+++++++|||+..+..   +..+.+.|..|++||++|+||.+|.=++
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yl   71 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYL   71 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            899999999987567999999999999999999976532   3457788999999999999999996544

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.86  E-value=1.2e-22  Score=109.07  Aligned_cols=60  Identities=17%  Similarity=0.243  Sum_probs=54.8

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhccc
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNFHL   68 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~R~   68 (72)
                      ..++|+||||++++..+.++|+++|+++++++|||++++      .++|++|++||++|+|+.+|.
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~------~e~~~~in~Ay~~L~d~~~r~   69 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS------HALMQELNSLWGTFKTEVYNL   69 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC------HHHHHHHHHHHHHHCCHHHHH
Confidence            478999999999987799999999999999999999866      368999999999999998774

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.9e-21  Score=106.20  Aligned_cols=61  Identities=21%  Similarity=0.187  Sum_probs=55.1

Q ss_pred             ccchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHhcChhc
Q 035755            3 GDEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGRKTDAESKFKLISEAYTYLLSGNF   66 (72)
Q Consensus         3 ~~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~~~~~~~~~~~i~~Ay~~L~d~~~   66 (72)
                      .+|+|+||||+.++  |.++||++||+++++||||+++++ ...+++.|+.|++||++|+++..
T Consensus        15 ~~~~y~iL~v~~~a--s~~eIKkAYrrl~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~~~~~   75 (88)
T d1iura_          15 LKEVTSVVEQAWKL--PESERKKIIRRLYLKWHPDKNPEN-HDIANEVFKHLQNEINRLEKQAF   75 (88)
T ss_dssp             HHHHHHHHHHTTSS--CSHHHHHHHHHHHHHTCTTTSSSC-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCC--CHHHHHHHHHHHHHHhccccccch-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999999  999999999999999999998875 35789999999999999987643

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=1e-20  Score=105.01  Aligned_cols=64  Identities=19%  Similarity=0.235  Sum_probs=57.0

Q ss_pred             cchhhhhCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC-chHHHHHHHHHHHHHHHhcChhccch
Q 035755            4 DEARVLLGFPPNSRPNASQVKAAYKRKVWECHPDLFPVGR-KTDAESKFKLISEAYTYLLSGNFHLF   69 (72)
Q Consensus         4 ~d~y~iLgl~~~~~~~~~~ik~~yr~l~~~~hPDk~~~~~-~~~~~~~~~~i~~Ay~~L~d~~~R~~   69 (72)
                      .+.|++||+++.+  +.++||++||++++.+|||++++.. ...+++.|+.|++||++|+||.+|.-
T Consensus        33 ~~~y~~Lgl~~~~--t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~   97 (98)
T d1nz6a_          33 ETKWKPVGMADLV--TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPL   97 (98)
T ss_dssp             CCSCCCCCGGGCC--SHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             ccCCeecCCCccC--CHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhc
Confidence            4789999999999  9999999999999999999987643 34588899999999999999999853