Citrus Sinensis ID: 035790

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTILRIIKPKLMLVQIKFAEPSDVCQKWGRGGAKI
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHccccccEEEccccccHHHHHHHHHccHHHHHHHHcccccccHHHHHHHcccccccEEEcccccccHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHccccccccccccEEccccccccccEEEcccccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHEEEccccccHHHHHHHHHHHHccEEEEEEcccccHHHHHHHHHccccccEEEcccccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHcccEEEEEEcccccccccccccEEEEEEEcccccccccccEEEHHHEccHHHccccEEcccccHHHccccccccc
Coil and Loop (DISEMBL)
mgrhrpdhatgepmdegfGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAfagdsdmgLKYVLegcpklqkleirdspfgdaaLRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRsddeeetdNYVETLYMYrslegprhdapkFVTILRIIKPKLMLVQIkfaepsdvcqkwgrggaki
Flexible Loop (DISEMBL)
mgrhrpdhatgepmdegfGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVirsddeeetdnYVETLYMYrslegprhdapKFVTILRIIKPKLMLVQIKfaepsdvcqkwgrggaki
Low Complexity Region (SEG)
MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTILRIIKPKLMLVQIKFAEPSDVCQKWGRGGAKI
Disordered region (IsUnstruct)
****************GFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTILRIIKPKLMLVQIKFAEPSDVCQKW*******
Disordered Region (DISOPRED)
*****PD*ATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTILRIIKPKLMLVQIKFAEPSDV***********
Disordered Region (DISEMBL)
**********GEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTILRIIKPKLMLVQIKFAEPSDVC**********
Disordered Region (DISPRO)
*****PDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTILRIIKPKLMLVQIKFAEPSDVCQKWGRG****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTILRIIKPKLMLVQIKFAEPSDVCQKWGRGGAKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q9LTX2	619	Transport inhibitor respo	yes	no	0.843	0.269	0.784	3e-75
Q8RWQ8	623	F-box protein FBX14 OS=Ar	no	no	0.843	0.268	0.725	1e-71
Q7XVM8	575	Transport inhibitor respo	no	no	0.823	0.283	0.570	3e-49
Q9LPW7	577	Protein AUXIN SIGNALING F	no	no	0.828	0.284	0.538	1e-47
Q2R3K5	568	Transport inhibitor respo	no	no	0.803	0.279	0.539	8e-47
Q9ZR12	585	GRR1-like protein 1 OS=Ar	no	no	0.803	0.271	0.534	2e-43
Q9LW29	575	Protein AUXIN SIGNALING F	no	no	0.828	0.285	0.526	9e-43
Q0DKP3	587	Transport inhibitor respo	no	no	0.828	0.279	0.494	7e-42
Q570C0	594	Protein TRANSPORT INHIBIT	no	no	0.803	0.267	0.524	1e-37
O04197	592	Coronatine-insensitive pr	no	no	0.828	0.277	0.325	7e-18

>sp|Q9LTX2|TIR1L_ARATH Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1

 Score =  280 bits (717), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 131/167 (78%), Positives = 155/167 (92%)

Query: 1   MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
           MGRHRPDH TG+PMDEGFGAIV+NC+KLTRLAVSGLLTD+AF Y+G+YGKL+RTLSVAFA
Sbjct: 453 MGRHRPDHVTGKPMDEGFGAIVKNCKKLTRLAVSGLLTDQAFRYMGEYGKLVRTLSVAFA 512

Query: 61  GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
           GDSDM L++VLEGCP+LQKLEIRDSPFGD ALRSG+H YYNMRF+WMS+C L++  C++I
Sbjct: 513 GDSDMALRHVLEGCPRLQKLEIRDSPFGDVALRSGMHRYYNMRFVWMSACSLSKGCCKDI 572

Query: 121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
           A+AMP LVVEVI SDD+++  +YVETLYMYRSL+GPR+DAPKFVTIL
Sbjct: 573 ARAMPNLVVEVIGSDDDDDNRDYVETLYMYRSLDGPRNDAPKFVTIL 619

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWQ8|FBX14_ARATH F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX14 PE=2 SV=1

 Score =  269 bits (687), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 124/171 (72%), Positives = 148/171 (86%), Gaps = 4/171 (2%)

Query: 1   MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
           MGRHRPDH TG+PMD+GFGAIV+NC+KLTRLAVSGLLTD AF YIG+YGKLIRTLSVAFA
Sbjct: 453 MGRHRPDHVTGKPMDDGFGAIVKNCKKLTRLAVSGLLTDEAFSYIGEYGKLIRTLSVAFA 512

Query: 61  GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
           G+SD  L+YVLEGCPKLQKLEIRDSPFGD  LRSG+H Y NMRF+W+SSC ++R GC+ +
Sbjct: 513 GNSDKALRYVLEGCPKLQKLEIRDSPFGDVGLRSGMHRYSNMRFVWLSSCLISRGGCRGV 572

Query: 121 AQAMPRLVVEVIRSDDEEETD----NYVETLYMYRSLEGPRHDAPKFVTIL 167
           + A+P +VVEV  +D +++ D    +YVETLY+YRSL+GPR DAPKFVTIL
Sbjct: 573 SHALPNVVVEVFGADGDDDEDTVTGDYVETLYLYRSLDGPRKDAPKFVTIL 623

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XVM8|TIR1B_ORYSJ Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica GN=Os04g0395600 PE=2 SV=1

 Score =  194 bits (493), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 117/170 (68%), Gaps = 7/170 (4%)

Query: 5   RPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSD 64
           +PD  T +P+DEGFGAIVR C+ L RL++SGLLTD+ F YIGKY K +  LS+AFAGDSD
Sbjct: 406 KPDVVTSQPLDEGFGAIVRECKGLQRLSISGLLTDKVFMYIGKYAKQLEMLSIAFAGDSD 465

Query: 65  MGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAM 124
            G+ +V+ GC  L+KLEIRDSPFGDAAL      Y  MR LWMSSC +T +GCQ +A  M
Sbjct: 466 KGMMHVMNGCKNLRKLEIRDSPFGDAALLGNFARYETMRSLWMSSCNVTLKGCQVLASKM 525

Query: 125 PRLVVEVIRSDD--EEETDNY-----VETLYMYRSLEGPRHDAPKFVTIL 167
           P L VEVI   D   E  +N+     VE LY+YR+  G R DAP FV IL
Sbjct: 526 PMLNVEVINERDGSNEMEENHGDLPKVEKLYVYRTTAGARDDAPNFVKIL 575

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LPW7|AFB3_ARATH Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1

 Score =  189 bits (480), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 121/171 (70%), Gaps = 7/171 (4%)

Query: 4   HRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDS 63
           H+PDH T + +DEGFGAIV+ C+ L RL+VSGLLTD+ F YIG Y + +  LS+AFAGD+
Sbjct: 407 HKPDHITFQSLDEGFGAIVQACKGLRRLSVSGLLTDQVFLYIGMYAEQLEMLSIAFAGDT 466

Query: 64  DMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQA 123
           D G+ YVL GC K++KLEIRDSPFG+AAL + +  Y  MR LWMSSC +T  GC+ +AQ 
Sbjct: 467 DKGMLYVLNGCKKMRKLEIRDSPFGNAALLADVGRYETMRSLWMSSCEVTLGGCKRLAQN 526

Query: 124 MPRLVVEVIRSD-------DEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
            PRL VE+I  +       +EE+    V+ LY+YR++ G R DAP +V IL
Sbjct: 527 SPRLNVEIINENENNGMEQNEEDEREKVDKLYLYRTVVGTRKDAPPYVRIL 577

Confers sensitivity to the virulent bacterial pathogen P.syringae (By similarity).Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. Involved in embryogenesis regulation by auxin.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2R3K5|TIRC_ORYSJ Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica GN=Os11g0515500 PE=2 SV=1

 Score =  186 bits (472), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 89/165 (53%), Positives = 119/165 (72%), Gaps = 6/165 (3%)

Query: 7   DHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMG 66
           D  TG+P+DEG+GAIV++C+ L RL +SGLLTD  F YIG Y + +  LSVAFAGD+D G
Sbjct: 402 DAVTGQPLDEGYGAIVQSCKGLRRLCLSGLLTDTVFLYIGMYAERLEMLSVAFAGDTDDG 461

Query: 67  LKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPR 126
           + YVL GC  L+KLEIRDSPFGD+AL +G+H Y  MR LW+SSC +T  GC+ +A +M  
Sbjct: 462 MTYVLNGCKNLKKLEIRDSPFGDSALLAGMHQYEAMRSLWLSSCNVTLGGCKSLAASMAN 521

Query: 127 LVVEVI-RSDDEEETDNY-----VETLYMYRSLEGPRHDAPKFVT 165
           L +EV+ R+    E DN      V+ LY+YR++ GPR DAP+F++
Sbjct: 522 LNIEVMNRAASINEADNANDAKKVKKLYIYRTVAGPRGDAPEFIS 566

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZR12|GRH1_ARATH GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH1 PE=1 SV=1

 Score =  175 bits (443), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 110/161 (68%), Gaps = 2/161 (1%)

Query: 6   PDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDM 65
           PD+ T EP+D+GF AI   CR L RL+VSGLL+D+AF YIGK+ K +R LS+AFAGDSD+
Sbjct: 408 PDYKTNEPLDKGFKAIAEGCRDLRRLSVSGLLSDKAFKYIGKHAKKVRMLSIAFAGDSDL 467

Query: 66  GLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMP 125
            L ++L GC  L+KLEIRD PFGD AL         MR LWMSSC ++   C+ ++Q MP
Sbjct: 468 MLHHLLSGCESLKKLEIRDCPFGDTALLEHAAKLETMRSLWMSSCFVSFGACKLLSQKMP 527

Query: 126 RLVVEVIRSDDEEE--TDNYVETLYMYRSLEGPRHDAPKFV 164
           RL VEVI     E     + VE +Y+YR++ GPR D P+FV
Sbjct: 528 RLNVEVIDEHPPESRPESSPVERIYIYRTVAGPRMDTPEFV 568

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. Involved in embryogenesis regulation by auxin. Confers sensitivity to the virulent bacterial pathogen P.syringae. Mediates glucose repression in yeast.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW29|AFB2_ARATH Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana GN=AFB2 PE=1 SV=1

 Score =  173 bits (438), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 117/171 (68%), Gaps = 7/171 (4%)

Query: 4   HRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDS 63
           ++PDH T +P+DEGFGAIV+ C+ L RL++SGLLTD+ F YIG Y   +  LS+AFAGD+
Sbjct: 405 NKPDHVTSQPLDEGFGAIVKACKSLRRLSLSGLLTDQVFLYIGMYANQLEMLSIAFAGDT 464

Query: 64  DMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQA 123
           D G+ YVL GC K++KLEIRDSPFGD AL + +  Y  MR LWMSSC +T  GC+ +A+ 
Sbjct: 465 DKGMLYVLNGCKKMKKLEIRDSPFGDTALLADVSKYETMRSLWMSSCEVTLSGCKRLAEK 524

Query: 124 MPRLVVEVIRSDDEE-------ETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
            P L VE+I  +D         E    V+ LY+YR++ G R DAP FV IL
Sbjct: 525 APWLNVEIINENDNNRMEENGHEGRQKVDKLYLYRTVVGTRMDAPPFVWIL 575

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Confers sensitivity to the virulent bacterial pathogen P.syringae (By similarity). Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. Involved in embryogenesis regulation by auxin.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0DKP3|TIR1A_ORYSJ Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica GN=Os05g0150500 PE=2 SV=2

 Score =  170 bits (430), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 108/170 (63%), Gaps = 6/170 (3%)

Query: 4   HRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDS 63
           H PD+ T EP+D GF AIV +CR L RL++SGLLTD  F  IG +   +  LS+AFAG+S
Sbjct: 418 HTPDYITREPLDAGFSAIVESCRGLRRLSISGLLTDLVFKSIGAHADRLEMLSIAFAGNS 477

Query: 64  DMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQA 123
           D+GL Y+L GC  L+KLEIRD PFGD  L +       MR LWMSSC LT   C+++A+ 
Sbjct: 478 DLGLHYILSGCKSLKKLEIRDCPFGDKPLLANAAKLETMRSLWMSSCLLTLGACRQLARK 537

Query: 124 MPRLVVEVIRSD------DEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
           MPRL VE++         D    +  VE LY+YR++ GPR D P  V I+
Sbjct: 538 MPRLSVEIMNDPGRSCPLDSLPDETPVEKLYVYRTIAGPRSDTPACVQIV 587

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q570C0|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/162 (52%), Positives = 109/162 (67%), Gaps = 3/162 (1%)

Query: 6   PDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDM 65
           PD+ T EP+D GFGAIV +C+ L RL++SGLLTD+ F YIG Y K +  LSVAFAGDSD+
Sbjct: 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471

Query: 66  GLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMP 125
           G+ +VL GC  L+KLEIRD PFGD AL +       MR LWMSSC ++   C+ + Q MP
Sbjct: 472 GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMP 531

Query: 126 RLVVEVIR---SDDEEETDNYVETLYMYRSLEGPRHDAPKFV 164
           +L VEVI    + D       VE +++YR++ GPR D P FV
Sbjct: 532 KLNVEVIDERGAPDSRPESCPVERVFIYRTVAGPRFDMPGFV 573

Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. The SCF(TIR1) E3 ubiquitin ligase complex is involved in auxin-mediated signaling pathway that regulate root and hypocotyl growth, lateral root formation, cell elongation, and gravitropism. Appears to allow pericycle cells to overcome G2 arrest prior to lateral root development. Plays a role in ethylene signaling in roots. Confers sensitivity to the virulent bacterial pathogen P.syringae.

Arabidopsis thaliana (taxid: 3702)

>sp|O04197|COI1_ARATH Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 11/175 (6%)

Query: 5   RPDHATGEPMDEGFGAIVRNCRKLTRLAV---SGLLTDRAFGYIGKYGKLIRTLSVAFAG 61
           R +  T  P+D G  +++  C+KL R A     G LTD    YIG+Y   +R + + + G
Sbjct: 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474

Query: 62  DSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIA 121
           +SD GL     GCP LQKLE+R   F + A+ + +    ++R+LW+   R +  G   + 
Sbjct: 475 ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534

Query: 122 QAMPRLVVEVIRSDDEEETDNYVETLYM--------YRSLEGPRHDAPKFVTILR 168
            A P   +E+I S    E +   E   M        Y SL G R D P  V +L+
Sbjct: 535 MARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLAGQRTDCPTTVRVLK 589

Required for jasmonate-regulated plant fertility and defense processes, and for coronatine and/or other elicitors perceptions/responses. Seems to not be required for meiosis. Required for the regulation of some genes induced by wounding, but not for all. Component of SCF(COI1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (probably including the ribulose bisphosphate carboxylase small chain 1B RBCS-1B and the histone deacetylase HDA6). These SCF complexes play crucial roles in regulating response to jasmonate, and their interactions with the COP9 signalosome (CSN) appear to be important for their activity. Interacts with TIFY10A and inositol pentakisphosphate to form a high-affinity jasmonates coreceptor. Involved in the regulation of plant gene expression during plant-pathogen interactions with Pseudomonas syringae and Alternaria brassicicola.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
13249030	635	F-box containing protein TIR1 [Populus t	0.843	0.262	0.844	2e-82
224082031	635	f-box family protein [Populus trichocarp	0.843	0.262	0.844	5e-82
359492916	601	PREDICTED: transport inhibitor response	0.838	0.276	0.862	1e-80
302142027	552	unnamed protein product [Vitis vinifera]	0.838	0.300	0.862	1e-80
224067017	635	f-box family protein [Populus trichocarp	0.843	0.262	0.820	6e-79
255545892	635	TRANSPORT INHIBITOR RESPONSE 1 protein,	0.843	0.262	0.808	2e-77
350535739	623	LeTIR [Solanum lycopersicum] gi|26217414	0.843	0.268	0.804	1e-76
449497026	637	PREDICTED: transport inhibitor response	0.843	0.262	0.775	2e-76
449437292	623	PREDICTED: transport inhibitor response	0.843	0.268	0.775	3e-76
356500748	630	PREDICTED: transport inhibitor response	0.848	0.266	0.773	6e-74

>gi|13249030|gb|AAK16647.1|AF139835_1 F-box containing protein TIR1 [Populus tremula x Populus tremuloides]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 141/167 (84%), Positives = 157/167 (94%)

Query: 1   MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
           MGRH+PDH TGEPMDEGFGAIV+NC+KLTRLAVSGLLTDRAF YIGKYGK++RTLSVAFA
Sbjct: 469 MGRHQPDHVTGEPMDEGFGAIVKNCKKLTRLAVSGLLTDRAFAYIGKYGKIVRTLSVAFA 528

Query: 61  GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
           GDSDMGLKYVLEGCP+LQKLEIRDSPFGDAAL SGLHHYYNMRFLWMS+C+L+RQGCQ+I
Sbjct: 529 GDSDMGLKYVLEGCPRLQKLEIRDSPFGDAALLSGLHHYYNMRFLWMSACKLSRQGCQQI 588

Query: 121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
            QA+PRLVVEVI+ DD  + D YV+TLYMYRSLEGPR DAP+FV+IL
Sbjct: 589 TQALPRLVVEVIKHDDNVDMDEYVDTLYMYRSLEGPRDDAPRFVSIL 635

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082031|ref|XP_002306554.1| f-box family protein [Populus trichocarpa] gi|222856003|gb|EEE93550.1| f-box family protein [Populus trichocarpa]

 Score =  309 bits (791), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 141/167 (84%), Positives = 157/167 (94%)

Query: 1   MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
           MGRH+PDH TGEPMDEGFGAIV+NC+KLTRLAVSGLLTDRAF YIGKYGK++RTLSVAFA
Sbjct: 469 MGRHQPDHVTGEPMDEGFGAIVKNCKKLTRLAVSGLLTDRAFAYIGKYGKIVRTLSVAFA 528

Query: 61  GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
           GDSDMGLKYVLEGCP+LQKLEIRDSPFGDAAL SGLHHYYNMRFLWMS+C+L+RQGCQ+I
Sbjct: 529 GDSDMGLKYVLEGCPRLQKLEIRDSPFGDAALLSGLHHYYNMRFLWMSACKLSRQGCQQI 588

Query: 121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
           AQA+PRLVVEVI+ +D  + D YV+TLYMYRSLEGPR DAP FV+IL
Sbjct: 589 AQALPRLVVEVIKHEDNVDVDEYVDTLYMYRSLEGPRDDAPIFVSIL 635

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492916|ref|XP_002283927.2| PREDICTED: transport inhibitor response 1-like protein [Vitis vinifera] gi|147845617|emb|CAN80598.1| hypothetical protein VITISV_002642 [Vitis vinifera]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 144/167 (86%), Positives = 157/167 (94%), Gaps = 1/167 (0%)

Query: 1   MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
           MGRHRPDH TGEPMDEGFGAIV NC+KLTRLA+SGLLTD+AF YIGKYGKL+RTLSVAFA
Sbjct: 436 MGRHRPDHITGEPMDEGFGAIVMNCKKLTRLAISGLLTDKAFSYIGKYGKLVRTLSVAFA 495

Query: 61  GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
           GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL+RQGC+EI
Sbjct: 496 GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLSRQGCEEI 555

Query: 121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
           A+AMP LVVEVIR+++EE+ D + E LYMYRSLE PR DAP+FVTIL
Sbjct: 556 ARAMPGLVVEVIRNENEEDKDGF-EILYMYRSLERPRIDAPEFVTIL 601

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142027|emb|CBI19230.3| unnamed protein product [Vitis vinifera]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 144/167 (86%), Positives = 157/167 (94%), Gaps = 1/167 (0%)

Query: 1   MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
           MGRHRPDH TGEPMDEGFGAIV NC+KLTRLA+SGLLTD+AF YIGKYGKL+RTLSVAFA
Sbjct: 387 MGRHRPDHITGEPMDEGFGAIVMNCKKLTRLAISGLLTDKAFSYIGKYGKLVRTLSVAFA 446

Query: 61  GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
           GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL+RQGC+EI
Sbjct: 447 GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLSRQGCEEI 506

Query: 121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
           A+AMP LVVEVIR+++EE+ D + E LYMYRSLE PR DAP+FVTIL
Sbjct: 507 ARAMPGLVVEVIRNENEEDKDGF-EILYMYRSLERPRIDAPEFVTIL 552

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067017|ref|XP_002302328.1| f-box family protein [Populus trichocarpa] gi|222844054|gb|EEE81601.1| f-box family protein [Populus trichocarpa]

 Score =  298 bits (764), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 137/167 (82%), Positives = 152/167 (91%)

Query: 1   MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
           MG H+PDH TGEPMDEGFGAIV NC+KLTRLAVSGLLTDRAF YIGKYGK++RTLSVAFA
Sbjct: 469 MGLHQPDHVTGEPMDEGFGAIVMNCKKLTRLAVSGLLTDRAFAYIGKYGKIVRTLSVAFA 528

Query: 61  GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
           GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAAL SGLHHYYNMRFLWMS+C+L+ QGCQ+I
Sbjct: 529 GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALLSGLHHYYNMRFLWMSACKLSHQGCQQI 588

Query: 121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
           AQA+P LVVEVI+ +D  + D YV+TLYMYRSL G RHD P+FV+IL
Sbjct: 589 AQALPHLVVEVIKHEDNVDMDEYVDTLYMYRSLAGRRHDVPRFVSIL 635

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545892|ref|XP_002514006.1| TRANSPORT INHIBITOR RESPONSE 1 protein, putative [Ricinus communis] gi|223547092|gb|EEF48589.1| TRANSPORT INHIBITOR RESPONSE 1 protein, putative [Ricinus communis]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 152/167 (91%)

Query: 1   MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
           MGRHRPD  TGEPMDEGFGAIV NC+KL+RLAVSGLLTDRAF YIG+YGK +RTLSVAFA
Sbjct: 469 MGRHRPDRVTGEPMDEGFGAIVMNCKKLSRLAVSGLLTDRAFSYIGEYGKTVRTLSVAFA 528

Query: 61  GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
           GDSDMGLKY+LEGCPKLQKLEIRDSPFGD AL SGLHHYYNMRFLWMS+C+LTR GCQ+I
Sbjct: 529 GDSDMGLKYLLEGCPKLQKLEIRDSPFGDGALLSGLHHYYNMRFLWMSACKLTRNGCQQI 588

Query: 121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
           A+ +P LVVEVI  + +E+ +N+V+TLYMYRSLEGPR DAPKFV+IL
Sbjct: 589 ARELPGLVVEVINHEYDEDMENFVDTLYMYRSLEGPRDDAPKFVSIL 635

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535739|ref|NP_001234722.1| LeTIR [Solanum lycopersicum] gi|262174141|gb|ACY26209.1| LeTIR [Solanum lycopersicum]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 136/169 (80%), Positives = 150/169 (88%), Gaps = 2/169 (1%)

Query: 1   MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
           MGRH PDH T EPMDEGFGAIV+NC+KLTRLAVSGLLTDRAF YIG+YGKL+RTLSVAFA
Sbjct: 455 MGRHLPDHVTNEPMDEGFGAIVKNCKKLTRLAVSGLLTDRAFSYIGQYGKLVRTLSVAFA 514

Query: 61  GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
           G+SD+ LKYVLEGCPKLQKLEIRD PFGD +LRSGLHHYYNMRFLW+SSCR+T QGCQEI
Sbjct: 515 GNSDLALKYVLEGCPKLQKLEIRDCPFGDLSLRSGLHHYYNMRFLWLSSCRVTLQGCQEI 574

Query: 121 AQAMPRLVVEVIRSDDEE--ETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
           A+ +PRLVVEVI  DDEE  ET+ +V TLYMYRSL+GPR D P FV IL
Sbjct: 575 ARQLPRLVVEVISGDDEEGSETNEHVNTLYMYRSLDGPRADVPSFVQIL 623

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497026|ref|XP_004160292.1| PREDICTED: transport inhibitor response 1-like protein-like [Cucumis sativus]

 Score =  290 bits (742), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 135/174 (77%), Positives = 153/174 (87%), Gaps = 7/174 (4%)

Query: 1   MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
           MGRH+PDH TG+PMDEGFGAIV NC+KLTRLA+SGLLTDRAF YIGKYGKL+RTLSVAFA
Sbjct: 464 MGRHQPDHKTGDPMDEGFGAIVINCKKLTRLAISGLLTDRAFSYIGKYGKLVRTLSVAFA 523

Query: 61  GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
           G+SD+ LKYVLEGC +LQKLEIRDSPFGD ALRSGLHHYYNMRFLWMS+C+L+RQGCQE+
Sbjct: 524 GNSDLALKYVLEGCHRLQKLEIRDSPFGDGALRSGLHHYYNMRFLWMSACKLSRQGCQEV 583

Query: 121 AQAMPRLVVEVIRSDDEEETDN-------YVETLYMYRSLEGPRHDAPKFVTIL 167
           A+AMP LVVEV++SDD+ E DN       +V+ LYMYRSLEGPR D PK V IL
Sbjct: 584 ARAMPHLVVEVMKSDDDNENDNQVEGMEDHVQVLYMYRSLEGPRDDTPKSVDIL 637

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437292|ref|XP_004136426.1| PREDICTED: transport inhibitor response 1-like protein-like [Cucumis sativus]

 Score =  290 bits (741), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 135/174 (77%), Positives = 153/174 (87%), Gaps = 7/174 (4%)

Query: 1   MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
           MGRH+PDH TG+PMDEGFGAIV NC+KLTRLA+SGLLTDRAF YIGKYGKL+RTLSVAFA
Sbjct: 450 MGRHQPDHKTGDPMDEGFGAIVINCKKLTRLAISGLLTDRAFSYIGKYGKLVRTLSVAFA 509

Query: 61  GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
           G+SD+ LKYVLEGC +LQKLEIRDSPFGD ALRSGLHHYYNMRFLWMS+C+L+RQGCQE+
Sbjct: 510 GNSDLALKYVLEGCHRLQKLEIRDSPFGDGALRSGLHHYYNMRFLWMSACKLSRQGCQEV 569

Query: 121 AQAMPRLVVEVIRSDDEEETDN-------YVETLYMYRSLEGPRHDAPKFVTIL 167
           A+AMP LVVEV++SDD+ E DN       +V+ LYMYRSLEGPR D PK V IL
Sbjct: 570 ARAMPHLVVEVMKSDDDNENDNQVEGMEDHVQVLYMYRSLEGPRDDTPKSVDIL 623

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500748|ref|XP_003519193.1| PREDICTED: transport inhibitor response 1-like protein-like [Glycine max]

 Score =  282 bits (721), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 130/168 (77%), Positives = 148/168 (88%)

Query: 1   MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
           +GR+RPD  T EPMDEGFGAIV NC+KLTRLAVSGLLTDRAF YIG YGKL+RTLSVAFA
Sbjct: 463 IGRYRPDPVTQEPMDEGFGAIVMNCKKLTRLAVSGLLTDRAFEYIGTYGKLVRTLSVAFA 522

Query: 61  GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
           GD+D+GLKYVL+GCP LQKLEIRDSPFGD ALRSGLHHYYNMRFLWMS+C+LT Q CQE+
Sbjct: 523 GDTDVGLKYVLKGCPNLQKLEIRDSPFGDGALRSGLHHYYNMRFLWMSTCKLTLQACQEV 582

Query: 121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTILR 168
           A+ +P LV EVI ++ EE   + VETLYMYRSL+GPR DAP+FVTIL+
Sbjct: 583 ARVLPNLVFEVINNNSEENAGDEVETLYMYRSLDGPRDDAPRFVTILQ 630

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
UNIPROTKB|Q9AUH6	635	TIR1 "F-box containing protein	0.843	0.262	0.844	4.3e-77
UNIPROTKB|B9H6Y0	635	FBL8 "F-box family protein" [P	0.843	0.262	0.844	1.1e-76
UNIPROTKB|A5AZ08	601	VITISV_002642 "Putative unchar	0.838	0.276	0.862	3.9e-76
UNIPROTKB|B9GV20	635	FBL7 "F-box family protein" [P	0.843	0.262	0.820	3.1e-74
UNIPROTKB|B9RJT7	635	RCOM_1038590 "TRANSPORT INHIBI	0.843	0.262	0.808	7.5e-73
TAIR|locus:2158824	619	AFB5 "AT5G49980" [Arabidopsis	0.843	0.269	0.784	1.8e-71
TAIR|locus:2135942	623	AFB4 "AT4G24390" [Arabidopsis	0.843	0.268	0.736	1.1e-66
UNIPROTKB|A5C819	620	VITISV_016565 "Putative unchar	0.833	0.266	0.598	5.2e-49
UNIPROTKB|B9H216	579	FBL5 "F-box family protein" [P	0.833	0.284	0.592	1.1e-48
UNIPROTKB|B9HZ12	579	FBL6 "F-box family protein" [P	0.833	0.284	0.586	2.3e-48

UNIPROTKB|Q9AUH6 TIR1 "F-box containing protein TIR1" [Populus tremula x Populus tremuloides (taxid:47664)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 141/167 (84%), Positives = 157/167 (94%)

Query:     1 MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
             MGRH+PDH TGEPMDEGFGAIV+NC+KLTRLAVSGLLTDRAF YIGKYGK++RTLSVAFA
Sbjct:   469 MGRHQPDHVTGEPMDEGFGAIVKNCKKLTRLAVSGLLTDRAFAYIGKYGKIVRTLSVAFA 528

Query:    61 GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
             GDSDMGLKYVLEGCP+LQKLEIRDSPFGDAAL SGLHHYYNMRFLWMS+C+L+RQGCQ+I
Sbjct:   529 GDSDMGLKYVLEGCPRLQKLEIRDSPFGDAALLSGLHHYYNMRFLWMSACKLSRQGCQQI 588

Query:   121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
              QA+PRLVVEVI+ DD  + D YV+TLYMYRSLEGPR DAP+FV+IL
Sbjct:   589 TQALPRLVVEVIKHDDNVDMDEYVDTLYMYRSLEGPRDDAPRFVSIL 635

GO:0000822 "inositol hexakisphosphate binding" evidence=ISS

GO:0009734 "auxin mediated signaling pathway" evidence=ISS

UNIPROTKB|B9H6Y0 FBL8 "F-box family protein" [Populus trichocarpa (taxid:3694)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 141/167 (84%), Positives = 157/167 (94%)

Query:     1 MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
             MGRH+PDH TGEPMDEGFGAIV+NC+KLTRLAVSGLLTDRAF YIGKYGK++RTLSVAFA
Sbjct:   469 MGRHQPDHVTGEPMDEGFGAIVKNCKKLTRLAVSGLLTDRAFAYIGKYGKIVRTLSVAFA 528

Query:    61 GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
             GDSDMGLKYVLEGCP+LQKLEIRDSPFGDAAL SGLHHYYNMRFLWMS+C+L+RQGCQ+I
Sbjct:   529 GDSDMGLKYVLEGCPRLQKLEIRDSPFGDAALLSGLHHYYNMRFLWMSACKLSRQGCQQI 588

Query:   121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
             AQA+PRLVVEVI+ +D  + D YV+TLYMYRSLEGPR DAP FV+IL
Sbjct:   589 AQALPRLVVEVIKHEDNVDVDEYVDTLYMYRSLEGPRDDAPIFVSIL 635

GO:0000822 "inositol hexakisphosphate binding" evidence=ISS

GO:0009734 "auxin mediated signaling pathway" evidence=ISS

UNIPROTKB|A5AZ08 VITISV_002642 "Putative uncharacterized protein" [Vitis vinifera (taxid:29760)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 144/167 (86%), Positives = 157/167 (94%)

Query:     1 MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
             MGRHRPDH TGEPMDEGFGAIV NC+KLTRLA+SGLLTD+AF YIGKYGKL+RTLSVAFA
Sbjct:   436 MGRHRPDHITGEPMDEGFGAIVMNCKKLTRLAISGLLTDKAFSYIGKYGKLVRTLSVAFA 495

Query:    61 GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
             GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL+RQGC+EI
Sbjct:   496 GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLSRQGCEEI 555

Query:   121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
             A+AMP LVVEVIR+++EE+ D + E LYMYRSLE PR DAP+FVTIL
Sbjct:   556 ARAMPGLVVEVIRNENEEDKDGF-EILYMYRSLERPRIDAPEFVTIL 601

GO:0000822 "inositol hexakisphosphate binding" evidence=ISS

GO:0009734 "auxin mediated signaling pathway" evidence=ISS

UNIPROTKB|B9GV20 FBL7 "F-box family protein" [Populus trichocarpa (taxid:3694)]

 Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
 Identities = 137/167 (82%), Positives = 152/167 (91%)

Query:     1 MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
             MG H+PDH TGEPMDEGFGAIV NC+KLTRLAVSGLLTDRAF YIGKYGK++RTLSVAFA
Sbjct:   469 MGLHQPDHVTGEPMDEGFGAIVMNCKKLTRLAVSGLLTDRAFAYIGKYGKIVRTLSVAFA 528

Query:    61 GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
             GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAAL SGLHHYYNMRFLWMS+C+L+ QGCQ+I
Sbjct:   529 GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALLSGLHHYYNMRFLWMSACKLSHQGCQQI 588

Query:   121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
             AQA+P LVVEVI+ +D  + D YV+TLYMYRSL G RHD P+FV+IL
Sbjct:   589 AQALPHLVVEVIKHEDNVDMDEYVDTLYMYRSLAGRRHDVPRFVSIL 635

GO:0000822 "inositol hexakisphosphate binding" evidence=ISS

GO:0009734 "auxin mediated signaling pathway" evidence=ISS

UNIPROTKB|B9RJT7 RCOM_1038590 "TRANSPORT INHIBITOR RESPONSE 1 protein, putative" [Ricinus communis (taxid:3988)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 135/167 (80%), Positives = 152/167 (91%)

Query:     1 MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
             MGRHRPD  TGEPMDEGFGAIV NC+KL+RLAVSGLLTDRAF YIG+YGK +RTLSVAFA
Sbjct:   469 MGRHRPDRVTGEPMDEGFGAIVMNCKKLSRLAVSGLLTDRAFSYIGEYGKTVRTLSVAFA 528

Query:    61 GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
             GDSDMGLKY+LEGCPKLQKLEIRDSPFGD AL SGLHHYYNMRFLWMS+C+LTR GCQ+I
Sbjct:   529 GDSDMGLKYLLEGCPKLQKLEIRDSPFGDGALLSGLHHYYNMRFLWMSACKLTRNGCQQI 588

Query:   121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
             A+ +P LVVEVI  + +E+ +N+V+TLYMYRSLEGPR DAPKFV+IL
Sbjct:   589 ARELPGLVVEVINHEYDEDMENFVDTLYMYRSLEGPRDDAPKFVSIL 635

GO:0000822 "inositol hexakisphosphate binding" evidence=ISS

GO:0009734 "auxin mediated signaling pathway" evidence=ISS

TAIR|locus:2158824 AFB5 "AT5G49980" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 131/167 (78%), Positives = 155/167 (92%)

Query:     1 MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
             MGRHRPDH TG+PMDEGFGAIV+NC+KLTRLAVSGLLTD+AF Y+G+YGKL+RTLSVAFA
Sbjct:   453 MGRHRPDHVTGKPMDEGFGAIVKNCKKLTRLAVSGLLTDQAFRYMGEYGKLVRTLSVAFA 512

Query:    61 GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
             GDSDM L++VLEGCP+LQKLEIRDSPFGD ALRSG+H YYNMRF+WMS+C L++  C++I
Sbjct:   513 GDSDMALRHVLEGCPRLQKLEIRDSPFGDVALRSGMHRYYNMRFVWMSACSLSKGCCKDI 572

Query:   121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
             A+AMP LVVEVI SDD+++  +YVETLYMYRSL+GPR+DAPKFVTIL
Sbjct:   573 ARAMPNLVVEVIGSDDDDDNRDYVETLYMYRSLDGPRNDAPKFVTIL 619

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2135942 AFB4 "AT4G24390" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 126/171 (73%), Positives = 149/171 (87%)

Query:     1 MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
             MGRHRPDH TG+PMD+GFGAIV+NC+KLTRLAVSGLLTD AF YIG+YGKLIRTLSVAFA
Sbjct:   453 MGRHRPDHVTGKPMDDGFGAIVKNCKKLTRLAVSGLLTDEAFSYIGEYGKLIRTLSVAFA 512

Query:    61 GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
             G+SD  L+YVLEGCPKLQKLEIRDSPFGD  LRSG+H Y NMRF+W+SSC ++R GC+ +
Sbjct:   513 GNSDKALRYVLEGCPKLQKLEIRDSPFGDVGLRSGMHRYSNMRFVWLSSCLISRGGCRGV 572

Query:   121 AQAMPRLVVEVIRSD-DEEE---TDNYVETLYMYRSLEGPRHDAPKFVTIL 167
             + A+P +VVEV  +D D++E   T +YVETLY+YRSL+GPR DAPKFVTIL
Sbjct:   573 SHALPNVVVEVFGADGDDDEDTVTGDYVETLYLYRSLDGPRKDAPKFVTIL 623

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

UNIPROTKB|A5C819 VITISV_016565 "Putative uncharacterized protein" [Vitis vinifera (taxid:29760)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 100/167 (59%), Positives = 121/167 (72%)

Query:     1 MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
             M    PD+ T EPMDE FGA+V+NC KL RLAVSGLLTD  F YIGKY K + TLSVAFA
Sbjct:   456 MNPGEPDYLTDEPMDEAFGAVVKNCTKLQRLAVSGLLTDLTFEYIGKYAKNLETLSVAFA 515

Query:    61 GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
             G SD G++ VL GC KL+KLEIRD PFG+ AL SGL  Y +MR LWMS+C +T   C+ +
Sbjct:   516 GSSDWGMQCVLSGCSKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRL 575

Query:   121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
             A+ MPRL VEV++  DEE  D+  + +Y+YRS+ GPR DAP FV  L
Sbjct:   576 AKQMPRLNVEVMK--DEESDDSQADKVYVYRSVAGPRRDAPPFVLTL 620

GO:0000822 "inositol hexakisphosphate binding" evidence=ISS

GO:0009734 "auxin mediated signaling pathway" evidence=ISS

UNIPROTKB|B9H216 FBL5 "F-box family protein" [Populus trichocarpa (taxid:3694)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 99/167 (59%), Positives = 123/167 (73%)

Query:     1 MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
             M   +PD+ T EPMDE FGA+VR C KL RL+VSGLLTD  F YIG+Y K + TLSVAFA
Sbjct:   412 MNPGQPDYLTNEPMDEAFGAVVRTCTKLQRLSVSGLLTDLTFEYIGQYAKNLETLSVAFA 471

Query:    61 GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
             G SD G++ VLEGCPKL+KLEIRD PFG+AAL SGL  Y +MR LWMS+C +T  GC+ +
Sbjct:   472 GSSDRGMQCVLEGCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSACNVTMNGCRLL 531

Query:   121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
             A+ MPRL VEV++ D  +  D+  + +Y+YRS+ GPR DAP  V  L
Sbjct:   532 AREMPRLNVEVMKEDGSD--DSQADKVYVYRSVAGPRRDAPPCVLTL 576

GO:0000822 "inositol hexakisphosphate binding" evidence=ISS

GO:0009734 "auxin mediated signaling pathway" evidence=ISS

UNIPROTKB|B9HZ12 FBL6 "F-box family protein" [Populus trichocarpa (taxid:3694)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 98/167 (58%), Positives = 123/167 (73%)

Query:     1 MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
             M   +PD+ T EPMDE FGA+VR C KL RL+VSGLLTD  F YIG+Y K + TLSVAFA
Sbjct:   412 MNPGQPDYLTNEPMDEAFGAVVRTCTKLQRLSVSGLLTDLTFEYIGQYAKNLETLSVAFA 471

Query:    61 GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
             G SD G++ +LEGCPKL+KLEIRD PFG+AAL SGL  Y +MR LWMS+C +T  GC+ +
Sbjct:   472 GSSDRGMQCMLEGCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSACNVTMNGCRVL 531

Query:   121 AQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL 167
             A+ MPRL VEV++ D  +  D+  + +Y+YRS+ GPR DAP  V  L
Sbjct:   532 AREMPRLNVEVMKEDGSD--DSQADKVYVYRSVVGPRRDAPPCVLTL 576

GO:0000822 "inositol hexakisphosphate binding" evidence=ISS

GO:0009734 "auxin mediated signaling pathway" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LTX2	TIR1L_ARATH	No assigned EC number	0.7844	0.8434	0.2697	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 75  PKLQKLEIRDSPFGDAALRS---GLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRL 127
             L++L + ++  GDA +R+   GL    N+  L +++  LT +G   +A+ +  L
Sbjct: 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL 220

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
KOG4341	483	consensus F-box protein containing LRR [General fu	99.47
KOG4341	483	consensus F-box protein containing LRR [General fu	99.47
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.45
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.29
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.21
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.11
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.0
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.8
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.47
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.18
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.16
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.16
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.97
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.89
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.84
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.82
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.74
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.7
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.59
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.54
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.38
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.17
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.99
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.96
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.8
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.61
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.52
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.16
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.07
KOG4308	478	consensus LRR-containing protein [Function unknown	96.04
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	95.96
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	95.75
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.71
KOG4308	478	consensus LRR-containing protein [Function unknown	95.39
PLN03150	623	hypothetical protein; Provisional	95.29
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.13
PLN03150	623	hypothetical protein; Provisional	95.11
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	94.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.89
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	94.71
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	94.7
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.65
PLN03210	1153	Resistant to P. syringae 6; Provisional	94.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	93.46
PLN03210	1153	Resistant to P. syringae 6; Provisional	93.44
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	93.2
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	93.03
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	91.35
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	90.02
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	89.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	89.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	88.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	88.74
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	88.43
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.33
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	87.02
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	86.75
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	86.13
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	84.98
KOG0472	565	consensus Leucine-rich repeat protein [Function un	84.22
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	84.19
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	82.19
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	82.17
KOG4237	498	consensus Extracellular matrix protein slit, conta	81.74
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	81.69
KOG4237	498	consensus Extracellular matrix protein slit, conta	80.8
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	80.32
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	80.18

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.47  E-value=2.5e-14  Score=128.12  Aligned_cols=168  Identities=20%  Similarity=0.286  Sum_probs=115.1

Q ss_pred             CCcHHHHHHHHhhCCCCceeEec--CCCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCC-CC
Q 035790           12 EPMDEGFGAIVRNCRKLTRLAVS--GLLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDS-PF   87 (198)
Q Consensus        12 ~~~D~g~~ai~~~c~~L~~L~L~--g~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c-~~   87 (198)
                      .+||..+..+++.|++|++|++.  -.+||..|+++++.|++|++|++++|.. ++.|++.+.+||++|+++.+++| ..
T Consensus       176 ~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~  255 (483)
T KOG4341|consen  176 KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL  255 (483)
T ss_pred             eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence            57888999999999999999993  4569999999999999999999999988 88888888888877666655555 34


Q ss_pred             C--------------------------hHHHHHHHhcCCCCcEEEeecee-cCHHHHHHHHHhCCCCcEEEecCCCCchh
Q 035790           88 G--------------------------DAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRLVVEVIRSDDEEET  140 (198)
Q Consensus        88 t--------------------------D~~l~~i~~~~~~L~~L~L~~c~-iTd~gl~~La~~~p~L~~~~i~~~~~~~~  140 (198)
                      .                          |+++..+...|..|+.|..++|. ++|.-+.+|.+++++|++..+.++.-  =
T Consensus       256 ~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~--f  333 (483)
T KOG4341|consen  256 ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ--F  333 (483)
T ss_pred             cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch--h
Confidence            4                          44444444455555555555555 66666666666667776655554400  0


Q ss_pred             HhHHHHHhHhhhccCCCCCCCCc-------ceeecccCCccccccccc
Q 035790          141 DNYVETLYMYRSLEGPRHDAPKF-------VTILRIIKPKLMLVQIKF  181 (198)
Q Consensus       141 ~~~~~~~~~y~sl~g~r~d~p~~-------v~~l~~~~~~~~~l~~~~  181 (198)
                      .+.=.+.++|-+-.-+|.|.-+.       +..+.+.|+.+..|-+|-
T Consensus       334 sd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslsh  381 (483)
T KOG4341|consen  334 SDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSH  381 (483)
T ss_pred             hhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhh
Confidence            00112445555555666665543       444688899988888873

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.47  E-value=1.2e-14  Score=130.15  Aligned_cols=168  Identities=17%  Similarity=0.262  Sum_probs=130.0

Q ss_pred             CcHHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCC-CCC
Q 035790           13 PMDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDS-PFG   88 (198)
Q Consensus        13 ~~D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c-~~t   88 (198)
                      +-|..++..+..||++++|++.|  .+||..+..++++|++|+.|+|..|.. ||..+++++++|++|+.|++++| .|+
T Consensus       151 v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~  230 (483)
T KOG4341|consen  151 VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQIS  230 (483)
T ss_pred             CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhh
Confidence            45677888899999999999955  579999999999999999999999888 99999999999999999999999 699


Q ss_pred             hHHHHHHHhcCCCCcEEEeecee-cCHHHHHHHHHhCCCCcEEEecCCCC-chhHhHHHH--H--hHhhhccCCCCCCCC
Q 035790           89 DAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRLVVEVIRSDDE-EETDNYVET--L--YMYRSLEGPRHDAPK  162 (198)
Q Consensus        89 D~~l~~i~~~~~~L~~L~L~~c~-iTd~gl~~La~~~p~L~~~~i~~~~~-~~~~~~~~~--~--~~y~sl~g~r~d~p~  162 (198)
                      +.++..+.+.|++|+.+.+.||. ..++.+..++..++.+..+....++. ++..-....  |  .-+.+.++. .|.++
T Consensus       231 ~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~-t~~~d  309 (483)
T KOG4341|consen  231 GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSC-TDITD  309 (483)
T ss_pred             cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCC-CCCch
Confidence            99999999999999999999998 99999999999988776555444421 111111111  1  122233343 34554


Q ss_pred             -cceeecccCCccccccccc
Q 035790          163 -FVTILRIIKPKLMLVQIKF  181 (198)
Q Consensus       163 -~v~~l~~~~~~~~~l~~~~  181 (198)
                       .++.|--.|.||+.|.++-
T Consensus       310 ~~l~aLg~~~~~L~~l~l~~  329 (483)
T KOG4341|consen  310 EVLWALGQHCHNLQVLELSG  329 (483)
T ss_pred             HHHHHHhcCCCceEEEeccc
Confidence             4567888899999888864

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.45  E-value=3.2e-13  Score=120.92  Aligned_cols=120  Identities=25%  Similarity=0.410  Sum_probs=96.1

Q ss_pred             CCcHHHHHHHHhhCCCCceeEecC---CCCHHH--HHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCC
Q 035790           12 EPMDEGFGAIVRNCRKLTRLAVSG---LLTDRA--FGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDS   85 (198)
Q Consensus        12 ~~~D~g~~ai~~~c~~L~~L~L~g---~lTD~~--L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c   85 (198)
                      .++|.++.+++..|++|+.|++++   .+++..  ...++..|++|++|++.+|.. +|.|+.+++..|++|+.|.+..|
T Consensus       200 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c  279 (482)
T KOG1947|consen  200 KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNC  279 (482)
T ss_pred             cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCC
Confidence            456677888888888888888854   223322  444777788888888888885 99999999888999999998888


Q ss_pred             C-CChHHHHHHHhcCCCCcEEEeecee-cCHHHHHHHHHhCCCCcEEE
Q 035790           86 P-FGDAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRLVVEV  131 (198)
Q Consensus        86 ~-~tD~~l~~i~~~~~~L~~L~L~~c~-iTd~gl~~La~~~p~L~~~~  131 (198)
                      . +||+|+..++..|++|++|++++|. ++|.|+..++..||+|+...
T Consensus       280 ~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~  327 (482)
T KOG1947|consen  280 SNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK  327 (482)
T ss_pred             CccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence            5 8999999998999999999999998 88999998888888776533

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.29  E-value=9.1e-12  Score=111.54  Aligned_cols=125  Identities=23%  Similarity=0.265  Sum_probs=108.7

Q ss_pred             CCCcHHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeec-cCC-ChH--HHHHHHhcCCCCceEEecC
Q 035790           11 GEPMDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAF-AGD-SDM--GLKYVLEGCPKLQKLEIRD   84 (198)
Q Consensus        11 ~~~~D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~-c~~-tD~--gl~~i~~~C~~L~~L~L~~   84 (198)
                      ....+.++..+...|++|++|.+.+  .++|.++..++..|++|+.|+++. |.. ++.  ....++..|++|+.|++++
T Consensus       173 ~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  252 (482)
T KOG1947|consen  173 SLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSG  252 (482)
T ss_pred             ccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhh
Confidence            3445677788888899999999954  468988999999999999999997 343 443  3566889999999999999


Q ss_pred             CC-CChHHHHHHHhcCCCCcEEEeecee-cCHHHHHHHHHhCCCCcEEEecCC
Q 035790           85 SP-FGDAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        85 c~-~tD~~l~~i~~~~~~L~~L~L~~c~-iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |. ++|.++.+++..|++|++|.+.+|. +|++|+..+++.||.|+...+..+
T Consensus       253 ~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  253 CGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             hhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence            95 9999999999999999999999999 999999999999999998888765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=2.2e-11  Score=106.05  Aligned_cols=153  Identities=19%  Similarity=0.254  Sum_probs=122.6

Q ss_pred             CcHHHHHHHHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCC-CCh
Q 035790           13 PMDEGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSP-FGD   89 (198)
Q Consensus        13 ~~D~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~-~tD   89 (198)
                      ++-..+..|+..|.+|+.|+|.| .+.|.....||+ ..+|+.|+|+.|.+ |..|+.-+.++|+.|.+|+|++|. ++|
T Consensus       197 it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~  275 (419)
T KOG2120|consen  197 ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE  275 (419)
T ss_pred             eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch
Confidence            34456778889999999999977 569999999996 68999999999999 999999999999999999999994 666


Q ss_pred             HHHHHHHhc-CCCCcEEEeecee--cCHHHHHHHHHhCCCCcEEEecCCCC--chhHhHHHHH--hHhhhccCCCCCCCC
Q 035790           90 AALRSGLHH-YYNMRFLWMSSCR--LTRQGCQEIAQAMPRLVVEVIRSDDE--EETDNYVETL--YMYRSLEGPRHDAPK  162 (198)
Q Consensus        90 ~~l~~i~~~-~~~L~~L~L~~c~--iTd~gl~~La~~~p~L~~~~i~~~~~--~~~~~~~~~~--~~y~sl~g~r~d~p~  162 (198)
                      . +..++.+ -++|+.|+|+||+  +-+.-++.++++||+|..+...++.+  .+....+-|+  +.|-||+-..+..|+
T Consensus       276 ~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~  354 (419)
T KOG2120|consen  276 K-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPE  354 (419)
T ss_pred             h-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChH
Confidence            6 5555444 4689999999997  77778999999999998777777633  2222234444  566777888888887


Q ss_pred             cceee
Q 035790          163 FVTIL  167 (198)
Q Consensus       163 ~v~~l  167 (198)
                      .+.-+
T Consensus       355 ~~~~l  359 (419)
T KOG2120|consen  355 TLLEL  359 (419)
T ss_pred             Heeee
Confidence            76655

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.11  E-value=5.8e-10  Score=95.33  Aligned_cols=74  Identities=23%  Similarity=0.356  Sum_probs=35.3

Q ss_pred             CCCcEEEeeccCCChHHHHHHHhc---CCCCceEEecCCCCChHHHHHH---HhcCCCCcEEEeeceecCHHHHHHHHHh
Q 035790           50 KLIRTLSVAFAGDSDMGLKYVLEG---CPKLQKLEIRDSPFGDAALRSG---LHHYYNMRFLWMSSCRLTRQGCQEIAQA  123 (198)
Q Consensus        50 ~~L~~L~L~~c~~tD~gl~~i~~~---C~~L~~L~L~~c~~tD~~l~~i---~~~~~~L~~L~L~~c~iTd~gl~~La~~  123 (198)
                      ++|+.|++++|..++.++..+...   +++|+.|++++|.+++.++..+   ..++++|++|++++|++++.++..++..
T Consensus       165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~  244 (319)
T cd00116         165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA  244 (319)
T ss_pred             CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHH
Confidence            445555555554444444443322   2355555555555554443322   2344455555555555555555554444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.00  E-value=3.1e-09  Score=90.80  Aligned_cols=118  Identities=18%  Similarity=0.232  Sum_probs=94.4

Q ss_pred             HHHHHhhCCCCceeEecC-CCCHHHHHHHHhcC---CCCcEEEeeccCCChHHHHHHH---hcCCCCceEEecCCCCChH
Q 035790           18 FGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYG---KLIRTLSVAFAGDSDMGLKYVL---EGCPKLQKLEIRDSPFGDA   90 (198)
Q Consensus        18 ~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~---~~L~~L~L~~c~~tD~gl~~i~---~~C~~L~~L~L~~c~~tD~   90 (198)
                      +......+++|++|++++ .+++.++..++...   ++|++|++++|..++.++..+.   ..+++|++|++++|+++|.
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~  236 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA  236 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence            444556788999999955 46888888776544   4999999999988888776554   4688999999999999999


Q ss_pred             HHHHHHhcC----CCCcEEEeeceecCHHHHHHHHHhCC---CCcEEEecCC
Q 035790           91 ALRSGLHHY----YNMRFLWMSSCRLTRQGCQEIAQAMP---RLVVEVIRSD  135 (198)
Q Consensus        91 ~l~~i~~~~----~~L~~L~L~~c~iTd~gl~~La~~~p---~L~~~~i~~~  135 (198)
                      ++..++..+    +.|++|++++|.+++.|...++..++   .|+...+..+
T Consensus       237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence            988877665    79999999999999999888877765   4555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=5.5e-09  Score=91.22  Aligned_cols=120  Identities=14%  Similarity=0.058  Sum_probs=91.3

Q ss_pred             cHHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHH-HhcCCCCceEEecCC--CCC
Q 035790           14 MDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYV-LEGCPKLQKLEIRDS--PFG   88 (198)
Q Consensus        14 ~D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i-~~~C~~L~~L~L~~c--~~t   88 (198)
                      .|.-+..|++ ..+|++|+|++  .+|..++..|...|+.|..|+|++|+.+.+.+..+ +.--++|++|+|++|  .+.
T Consensus       223 dD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~  301 (419)
T KOG2120|consen  223 DDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ  301 (419)
T ss_pred             CcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh
Confidence            3444456665 58999999932  24999999999999999999999999943335443 344578999999999  488


Q ss_pred             hHHHHHHHhcCCCCcEEEeecee-cCHHHHHHHHHhCCCCcEEEecCC
Q 035790           89 DAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        89 D~~l~~i~~~~~~L~~L~L~~c~-iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +..+..++++||+|.+|||+.|. +++.-+ ......|+|+....+.+
T Consensus       302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-~~~~kf~~L~~lSlsRC  348 (419)
T KOG2120|consen  302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFKFNYLQHLSLSRC  348 (419)
T ss_pred             hhHHHHHHHhCCceeeeccccccccCchHH-HHHHhcchheeeehhhh
Confidence            88888889999999999999998 888444 44446888876555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=1.4e-07  Score=78.19  Aligned_cols=95  Identities=19%  Similarity=0.190  Sum_probs=77.7

Q ss_pred             CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCC-CCChHHHHHHHhcCCCCcEEEeecee-c
Q 035790           36 LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDS-PFGDAALRSGLHHYYNMRFLWMSSCR-L  112 (198)
Q Consensus        36 ~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c-~~tD~~l~~i~~~~~~L~~L~L~~c~-i  112 (198)
                      .|.-++|+++. .++.|+.|.+.+|.. .|.++..+..-.++|+.|+|++| .|||.||+.+ .++++|+.|.|.+-+ |
T Consensus       112 ~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  112 SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHHHHhcCchhh
Confidence            35778888887 589999999999998 99999999998899999999999 6999999885 679999999999988 5


Q ss_pred             CHHH-HH-HHHHhCCCCcEEEe
Q 035790          113 TRQG-CQ-EIAQAMPRLVVEVI  132 (198)
Q Consensus       113 Td~g-l~-~La~~~p~L~~~~i  132 (198)
                      ...+ .. .|-..+|++++.-.
T Consensus       190 ~~~e~~~~~Le~aLP~c~I~~~  211 (221)
T KOG3864|consen  190 ANLELVQRQLEEALPKCDIVGP  211 (221)
T ss_pred             hchHHHHHHHHHhCcccceech
Confidence            5543 33 35567888876543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.22  E-value=2.1e-06  Score=76.13  Aligned_cols=103  Identities=20%  Similarity=0.217  Sum_probs=53.6

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHh---cCCCCcEEEeeccCCChHHHHHHH----hcCCCCceEEecCCCCChHHHHH
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGK---YGKLIRTLSVAFAGDSDMGLKYVL----EGCPKLQKLEIRDSPFGDAALRS   94 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~---~~~~L~~L~L~~c~~tD~gl~~i~----~~C~~L~~L~L~~c~~tD~~l~~   94 (198)
                      ..|++|+.|+|.. .+|-.+=.++|+   ..++|+.|++++|-..+.|..+|+    ++.|+|+.|++.+|.|+-++...
T Consensus       210 ~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~  289 (382)
T KOG1909|consen  210 EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA  289 (382)
T ss_pred             HhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence            3466666666632 234444444443   234555666666655444544443    33456666666666555444332


Q ss_pred             H---HhcCCCCcEEEeeceec--CHHHHHHHHHhCC
Q 035790           95 G---LHHYYNMRFLWMSSCRL--TRQGCQEIAQAMP  125 (198)
Q Consensus        95 i---~~~~~~L~~L~L~~c~i--Td~gl~~La~~~p  125 (198)
                      +   +...+.|+.|+|++|+.  -++++..++...+
T Consensus       290 la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~  325 (382)
T KOG1909|consen  290 LAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFD  325 (382)
T ss_pred             HHHHHhcchhhHHhcCCcccccccchhHHHHHHhcc
Confidence            2   22355666666666664  5556666665554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=7e-07  Score=81.15  Aligned_cols=117  Identities=20%  Similarity=0.253  Sum_probs=89.2

Q ss_pred             HHHHHHHhh---CCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCC---C
Q 035790           16 EGFGAIVRN---CRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSP---F   87 (198)
Q Consensus        16 ~g~~ai~~~---c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~---~   87 (198)
                      -||..|++.   ..+|+...|.. .+.+.+-+..++.|++++.|+|+.+-. .=.-+..|++.+|+|+.|+|+.|.   +
T Consensus       108 iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~  187 (505)
T KOG3207|consen  108 IGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF  187 (505)
T ss_pred             ecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence            366677654   55666667732 346666556777899999999998877 557788899999999999999884   3


Q ss_pred             ChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790           88 GDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        88 tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      ++.-...   ..++|+.|.|++|.+|-..+..++..+|.|..+....+
T Consensus       188 ~~s~~~~---~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  188 ISSNTTL---LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             ccccchh---hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            3333222   67789999999999999999999999999987776655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.16  E-value=6.9e-06  Score=72.90  Aligned_cols=55  Identities=16%  Similarity=0.305  Sum_probs=24.9

Q ss_pred             CCCCceEEecCCCCChHHH---HHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790           74 CPKLQKLEIRDSPFGDAAL---RSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV  128 (198)
Q Consensus        74 C~~L~~L~L~~c~~tD~~l---~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~  128 (198)
                      ++.|+.+.++.+.|..+|+   .....+|++|+.|+|+.+-.|-.|-.+|+...|.|+
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~  241 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP  241 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence            3444444444443332222   222345555555555555555555555555444443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=1.1e-06  Score=72.89  Aligned_cols=81  Identities=15%  Similarity=0.103  Sum_probs=68.4

Q ss_pred             cEEEeeccCCChHHHHHHHhcCCCCceEEecCC-CCChHHHHHHHhcCCCCcEEEeecee-cCHHHHHHHHHhCCCCcEE
Q 035790           53 RTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS-PFGDAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRLVVE  130 (198)
Q Consensus        53 ~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c-~~tD~~l~~i~~~~~~L~~L~L~~c~-iTd~gl~~La~~~p~L~~~  130 (198)
                      +.++-+.+...-+|+.++ ++++.|+.|.+.+| .|.|.+|..+..-.++|+.|+|++|. ||+.|+.-|. ..++|+..
T Consensus       104 eaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L  181 (221)
T KOG3864|consen  104 EAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRRL  181 (221)
T ss_pred             EEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHHH
Confidence            444445555577999987 67999999999999 79999999998888999999999998 9999999988 58888876


Q ss_pred             EecCC
Q 035790          131 VIRSD  135 (198)
Q Consensus       131 ~i~~~  135 (198)
                      .+..-
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            66643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.10  E-value=2.8e-07  Score=74.79  Aligned_cols=136  Identities=15%  Similarity=0.237  Sum_probs=49.5

Q ss_pred             hCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCC
Q 035790           24 NCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNM  102 (198)
Q Consensus        24 ~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L  102 (198)
                      ++.++++|+|.|. .=..++.++..+.+|+.|++++|.. +=+|+.    ++++|+.|++++|.+++-+ ..+..++++|
T Consensus        17 n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~----~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L   90 (175)
T PF14580_consen   17 NPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSNNQITKLEGLP----GLPRLKTLDLSNNRISSIS-EGLDKNLPNL   90 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S-C-HHHHHH-TT-
T ss_pred             ccccccccccccc-ccccccchhhhhcCCCEEECCCCCCccccCcc----ChhhhhhcccCCCCCCccc-cchHHhCCcC
Confidence            4667888999663 1123456665678899999998887 333433    4788999999998877642 1233468899


Q ss_pred             cEEEeeceecCH-HHHHHHHHhCCCCcEEEecCCCCchhHhHHHHHhHhhhccCCCCCCCCcceeecccCCccccccccc
Q 035790          103 RFLWMSSCRLTR-QGCQEIAQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTILRIIKPKLMLVQIKF  181 (198)
Q Consensus       103 ~~L~L~~c~iTd-~gl~~La~~~p~L~~~~i~~~~~~~~~~~~~~~~~y~sl~g~r~d~p~~v~~l~~~~~~~~~l~~~~  181 (198)
                      ++|++++++|.+ ..+..++ .+|+|++..+.+++..                    +-+.|-..+.-.+++|..|+...
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv~--------------------~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLS-SLPKLRVLSLEGNPVC--------------------EKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGG-G-TT--EEE-TT-GGG--------------------GSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CEEECcCCcCCChHHhHHHH-cCCCcceeeccCCccc--------------------chhhHHHHHHHHcChhheeCCEE
Confidence            999999988655 3455555 6888888887765211                    11333333344556666666666


Q ss_pred             CCChh
Q 035790          182 AEPSD  186 (198)
Q Consensus       182 ~~~~~  186 (198)
                      .++..
T Consensus       150 V~~~E  154 (175)
T PF14580_consen  150 VTEEE  154 (175)
T ss_dssp             TTS-B
T ss_pred             ccHHH
Confidence            55543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.97  E-value=1.8e-06  Score=70.12  Aligned_cols=105  Identities=19%  Similarity=0.181  Sum_probs=48.7

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHH-HHHHHhcCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAA-LRSGLHHYY  100 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~-l~~i~~~~~  100 (198)
                      ..+.+|+.|+++. .++.  +..+. .+++|++|+++++..++-+ ..+.+.||+|++|.+++|.|.+-. +.. ...++
T Consensus        39 ~~l~~L~~L~Ls~N~I~~--l~~l~-~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~-L~~l~  113 (175)
T PF14580_consen   39 ATLDKLEVLDLSNNQITK--LEGLP-GLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEP-LSSLP  113 (175)
T ss_dssp             TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGG-GGG-T
T ss_pred             hhhcCCCEEECCCCCCcc--ccCcc-ChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHH-HHcCC
Confidence            3467899999965 2232  33344 4799999999999885432 123356999999999999876632 434 46899


Q ss_pred             CCcEEEeeceecCHH-HH-HHHHHhCCCCcEEEe
Q 035790          101 NMRFLWMSSCRLTRQ-GC-QEIAQAMPRLVVEVI  132 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~-gl-~~La~~~p~L~~~~i  132 (198)
                      +|+.|+|.+++|++. .. ..+...+|+|++..-
T Consensus       114 ~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  114 KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            999999999997654 33 346668999976543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.89  E-value=1.6e-05  Score=76.86  Aligned_cols=63  Identities=21%  Similarity=0.299  Sum_probs=28.8

Q ss_pred             CCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCCh
Q 035790           27 KLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGD   89 (198)
Q Consensus        27 ~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD   89 (198)
                      +|++|+++|  .++..=...|+..+|.|++|.+.+-....+-+..+..+.|+|..|||+++++++
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n  187 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN  187 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC
Confidence            455555533  223333444555555555555544333222244444455555555555554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.84  E-value=8.2e-05  Score=72.00  Aligned_cols=111  Identities=20%  Similarity=0.171  Sum_probs=79.3

Q ss_pred             HHHHHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCC-hHHHHHHH---------------------hcC
Q 035790           18 FGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDS-DMGLKYVL---------------------EGC   74 (198)
Q Consensus        18 ~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~t-D~gl~~i~---------------------~~C   74 (198)
                      ...+..-+|.|++|.+++ .+.++.|..+..++|||..||+++++.+ =.|+..+-                     -++
T Consensus       140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L  219 (699)
T KOG3665|consen  140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNL  219 (699)
T ss_pred             HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence            467778899999999976 3445558888889999999999998873 34443320                     136


Q ss_pred             CCCceEEecCCCCChHH--HHHH---HhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790           75 PKLQKLEIRDSPFGDAA--LRSG---LHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV  128 (198)
Q Consensus        75 ~~L~~L~L~~c~~tD~~--l~~i---~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~  128 (198)
                      ++|+.||+|.-...+..  +...   ...+|+||.||.+|..++.+-++.+....|+|.
T Consensus       220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            77888888876433222  1111   245788999999988888888888888888775

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=1.2e-05  Score=73.36  Aligned_cols=93  Identities=11%  Similarity=0.064  Sum_probs=71.6

Q ss_pred             HHHHHHHhhCCCCceeEecC-CC-CHHHHHHHHhcCCCCcEEEeeccCC---ChHHHHHHHhcCCCCceEEecCCCCChH
Q 035790           16 EGFGAIVRNCRKLTRLAVSG-LL-TDRAFGYIGKYGKLIRTLSVAFAGD---SDMGLKYVLEGCPKLQKLEIRDSPFGDA   90 (198)
Q Consensus        16 ~g~~ai~~~c~~L~~L~L~g-~l-TD~~L~~I~~~~~~L~~L~L~~c~~---tD~gl~~i~~~C~~L~~L~L~~c~~tD~   90 (198)
                      .|....++.|++++.|+|++ ++ .-..+..|++..|+|+.|+|+.+..   ++.-...   ..+.|++|.|+.|.++-.
T Consensus       136 ~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k  212 (505)
T KOG3207|consen  136 AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWK  212 (505)
T ss_pred             cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hhhhhheEEeccCCCCHH
Confidence            34446788999999999987 33 4467888999999999999987653   2211111   456788999999999988


Q ss_pred             HHHHHHhcCCCCcEEEeecee
Q 035790           91 ALRSGLHHYYNMRFLWMSSCR  111 (198)
Q Consensus        91 ~l~~i~~~~~~L~~L~L~~c~  111 (198)
                      .+.+++..+|+|+.|.++++.
T Consensus       213 ~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  213 DVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             HHHHHHHhCCcHHHhhhhccc
Confidence            888988889998888888884

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.74  E-value=4.1e-05  Score=75.55  Aligned_cols=82  Identities=9%  Similarity=-0.048  Sum_probs=35.4

Q ss_pred             CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790           49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV  128 (198)
Q Consensus        49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~  128 (198)
                      +++|++|+|++|..+..--..+ .++++|+.|++++|.++...-.. ..++++|++|++++|.++..--..+. .+++|+
T Consensus       187 l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~  263 (968)
T PLN00113        187 LTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQ  263 (968)
T ss_pred             CcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccccChhHh-CCCCCC
Confidence            4455555555444321111111 23555555555555444322111 24556666666666654332222222 345555


Q ss_pred             EEEec
Q 035790          129 VEVIR  133 (198)
Q Consensus       129 ~~~i~  133 (198)
                      ...+.
T Consensus       264 ~L~L~  268 (968)
T PLN00113        264 YLFLY  268 (968)
T ss_pred             EEECc
Confidence            44444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.70  E-value=5.4e-05  Score=74.72  Aligned_cols=86  Identities=12%  Similarity=0.112  Sum_probs=44.1

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..+++|+.|+|++ .++...-..+...+++|++|+|+++..++.  .. ....++|++|++++|.++..--.. ..++++
T Consensus        90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~--~p-~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~  165 (968)
T PLN00113         90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS--IP-RGSIPNLETLDLSNNMLSGEIPND-IGSFSS  165 (968)
T ss_pred             hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc--cC-ccccCCCCEEECcCCcccccCChH-HhcCCC
Confidence            4577777777744 223222233444567777777766654210  00 023556666666666544321111 245566


Q ss_pred             CcEEEeeceec
Q 035790          102 MRFLWMSSCRL  112 (198)
Q Consensus       102 L~~L~L~~c~i  112 (198)
                      |++|+|++|.+
T Consensus       166 L~~L~L~~n~l  176 (968)
T PLN00113        166 LKVLDLGGNVL  176 (968)
T ss_pred             CCEEECccCcc
Confidence            66666666653

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.59  E-value=6.4e-05  Score=41.96  Aligned_cols=22  Identities=27%  Similarity=0.644  Sum_probs=10.6

Q ss_pred             CCCCceEEecCC-CCChHHHHHH
Q 035790           74 CPKLQKLEIRDS-PFGDAALRSG   95 (198)
Q Consensus        74 C~~L~~L~L~~c-~~tD~~l~~i   95 (198)
                      |++|++|+|++| .|||.|+.++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            444555555555 3455554444

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.54  E-value=6.3e-05  Score=41.99  Aligned_cols=24  Identities=38%  Similarity=0.563  Sum_probs=22.5

Q ss_pred             CCCCcEEEeecee-cCHHHHHHHHH
Q 035790           99 YYNMRFLWMSSCR-LTRQGCQEIAQ  122 (198)
Q Consensus        99 ~~~L~~L~L~~c~-iTd~gl~~La~  122 (198)
                      |++|++|+|++|. |||.|+..|++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            7899999999998 99999999985

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.38  E-value=0.00014  Score=45.81  Aligned_cols=38  Identities=18%  Similarity=0.315  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCH
Q 035790           75 PKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTR  114 (198)
Q Consensus        75 ~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd  114 (198)
                      ++|++|++++|.|++-  .....++++|+.|++++|++++
T Consensus         1 ~~L~~L~l~~N~i~~l--~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITDL--PPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SSH--GGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCccc--CchHhCCCCCCEEEecCCCCCC
Confidence            4677777777777763  2324677777777777777653

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.17  E-value=2.7e-05  Score=51.61  Aligned_cols=60  Identities=13%  Similarity=0.265  Sum_probs=40.6

Q ss_pred             CCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790           50 KLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR  111 (198)
Q Consensus        50 ~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~  111 (198)
                      |+|++|++++|..+.-.-. ...++++|++|++++|.++.-.-. ...++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~-~f~~l~~L~~L~l~~N~l~~i~~~-~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPD-SFSNLPNLETLDLSNNNLTSIPPD-AFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTT-TTTTGTTESEEEETSSSESEEETT-TTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHH-HHcCCCCCCEeEccCCccCccCHH-HHcCCCCCCEEeCcCCc
Confidence            5788888888865322222 235688899999998876532211 24678889999988876

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.99  E-value=0.00051  Score=37.38  Aligned_cols=21  Identities=19%  Similarity=0.427  Sum_probs=8.6

Q ss_pred             CCCceEEecCCCCChHHHHHH
Q 035790           75 PKLQKLEIRDSPFGDAALRSG   95 (198)
Q Consensus        75 ~~L~~L~L~~c~~tD~~l~~i   95 (198)
                      ++|++|+|++|.|+|+|+.++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            344444444444444444443

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.96  E-value=0.00057  Score=37.19  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=19.6

Q ss_pred             CCCCcEEEeeceecCHHHHHHHHH
Q 035790           99 YYNMRFLWMSSCRLTRQGCQEIAQ  122 (198)
Q Consensus        99 ~~~L~~L~L~~c~iTd~gl~~La~  122 (198)
                      |++|++|+|++|.|+++|+++|++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~~   24 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALAN   24 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhCC
Confidence            579999999999999999999874

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.90  E-value=0.0011  Score=41.64  Aligned_cols=38  Identities=26%  Similarity=0.428  Sum_probs=28.6

Q ss_pred             CCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCCh
Q 035790           50 KLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGD   89 (198)
Q Consensus        50 ~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD   89 (198)
                      ++|++|+++++..++  +.....+|++|+.|++++|+|+|
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCC
Confidence            589999999988865  33324679999999999998875

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.80  E-value=0.0015  Score=62.05  Aligned_cols=169  Identities=13%  Similarity=0.067  Sum_probs=108.0

Q ss_pred             hhCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCC---ChHHHHHHH----------------h----cCCCCce
Q 035790           23 RNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGD---SDMGLKYVL----------------E----GCPKLQK   79 (198)
Q Consensus        23 ~~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~---tD~gl~~i~----------------~----~C~~L~~   79 (198)
                      ...++|+.+++... --..+-+.+....+|+.|+|..+-.   +.+.+.+..                .    .-.++++
T Consensus        99 ~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~  177 (873)
T KOG4194|consen   99 YNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK  177 (873)
T ss_pred             hcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence            56788888888432 0112233333445677777766654   344444332                1    1246888


Q ss_pred             EEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCCCC-chhHhHHHHHhHhhhccCCCC
Q 035790           80 LEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDDE-EETDNYVETLYMYRSLEGPRH  158 (198)
Q Consensus        80 L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~~~-~~~~~~~~~~~~y~sl~g~r~  158 (198)
                      |+|+++.||+-+.... ..+.+|-.|.|+.+++|.--.+.+. +.|+|+.+....+-. ....-.|..+-..+.|.-.|.
T Consensus       178 L~La~N~It~l~~~~F-~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN  255 (873)
T KOG4194|consen  178 LNLASNRITTLETGHF-DSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN  255 (873)
T ss_pred             Eeeccccccccccccc-cccchheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence            8888887777665543 3455788888888886655444443 466665444333211 112335788888899999999


Q ss_pred             CCCCcceeecccCCcccccccccCCChhhhhhhcCC
Q 035790          159 DAPKFVTILRIIKPKLMLVQIKFAEPSDVCQKWGRG  194 (198)
Q Consensus       159 d~p~~v~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~  194 (198)
                      +.-.--.-.+..|.++..|+|+|-.=..|-..|=-|
T Consensus       256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg  291 (873)
T KOG4194|consen  256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG  291 (873)
T ss_pred             CcccccCcceeeecccceeecccchhhhhhcccccc
Confidence            988877778889999999999998877776666443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.61  E-value=0.022  Score=49.96  Aligned_cols=105  Identities=15%  Similarity=0.169  Sum_probs=61.4

Q ss_pred             hhCCCCceeEecC-CC---C-HHHHHHHHhcCCCCcEEEeeccCC-Ch------HHHHHHH-----hcCC----------
Q 035790           23 RNCRKLTRLAVSG-LL---T-DRAFGYIGKYGKLIRTLSVAFAGD-SD------MGLKYVL-----EGCP----------   75 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~l---T-D~~L~~I~~~~~~L~~L~L~~c~~-tD------~gl~~i~-----~~C~----------   75 (198)
                      -.||+|+..+||. .+   + ..--.+|+ +..+|++|-+.+|+. .-      .++.+++     ..-|          
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is-~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLIS-SSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHh-cCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            3699999999853 11   2 23334444 678888888888864 11      2222222     1223          


Q ss_pred             ------------------CCceEEecCCCCChHHHHHH----HhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790           76 ------------------KLQKLEIRDSPFGDAALRSG----LHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV  128 (198)
Q Consensus        76 ------------------~L~~L~L~~c~~tD~~l~~i----~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~  128 (198)
                                        +|+.+.+..|.|-.+|+..+    +.+|.+|+.|+|+.+..|-.|-..++...|.|+
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~  242 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN  242 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence                              44555555555545554443    356677777777777777777777776666665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.56  E-value=0.02  Score=50.15  Aligned_cols=120  Identities=23%  Similarity=0.304  Sum_probs=79.2

Q ss_pred             HHHHHHHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEe---ec--cCC-ChHH---H---HHHHhcCCCCceEEe
Q 035790           16 EGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSV---AF--AGD-SDMG---L---KYVLEGCPKLQKLEI   82 (198)
Q Consensus        16 ~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L---~~--c~~-tD~g---l---~~i~~~C~~L~~L~L   82 (198)
                      .|+.+.+.....+..++||| .+..++++.|++.-.+-+.|.+   +.  .+. -|+-   +   ....-+||+|++.++
T Consensus        20 k~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L   99 (388)
T COG5238          20 KGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL   99 (388)
T ss_pred             hHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence            44544445588999999988 5678888888876555555544   32  232 3322   2   222357999999999


Q ss_pred             cCCCCChH---HHHHHHhcCCCCcEEEeeceecCHHHHHHHH------------HhCCCCcEEEecCC
Q 035790           83 RDSPFGDA---ALRSGLHHYYNMRFLWMSSCRLTRQGCQEIA------------QAMPRLVVEVIRSD  135 (198)
Q Consensus        83 ~~c~~tD~---~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La------------~~~p~L~~~~i~~~  135 (198)
                      ++|.|+-.   -+...+.+.+.|.+|.|++|.+...|-..|+            ..-|.|++-++..+
T Consensus       100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238         100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            99977654   3455577889999999999985554433333            23477776666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.52  E-value=0.00067  Score=59.35  Aligned_cols=109  Identities=19%  Similarity=0.263  Sum_probs=75.5

Q ss_pred             cHHHHHHHHhh--CCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChH
Q 035790           14 MDEGFGAIVRN--CRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDA   90 (198)
Q Consensus        14 ~D~g~~ai~~~--c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~   90 (198)
                      |..-+..-++.  ..+.++|+..| -++|-   .|-+..+.|+.|.|+-+..+  .+..+ ..|.+|++|.|+.|.|.|-
T Consensus         5 Te~mV~~raK~sdl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIs--sL~pl-~rCtrLkElYLRkN~I~sl   78 (388)
T KOG2123|consen    5 TESMVYIRAKCSDLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKIS--SLAPL-QRCTRLKELYLRKNCIESL   78 (388)
T ss_pred             HHHHHHHHHHhhHHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccc--cchhH-HHHHHHHHHHHHhcccccH
Confidence            33444444431  23667788844 23774   35567899999999987773  34444 4599999999999988775


Q ss_pred             HHHHHHhcCCCCcEEEeecee-cCHHH---HHHHHHhCCCCc
Q 035790           91 ALRSGLHHYYNMRFLWMSSCR-LTRQG---CQEIAQAMPRLV  128 (198)
Q Consensus        91 ~l~~i~~~~~~L~~L~L~~c~-iTd~g---l~~La~~~p~L~  128 (198)
                      .=..-..++|+|+.|||..+. .-.+|   -..+.+..|+|+
T Consensus        79 dEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLk  120 (388)
T KOG2123|consen   79 DELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLK  120 (388)
T ss_pred             HHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccch
Confidence            533446899999999999987 43444   234667789886

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.16  E-value=0.0015  Score=55.94  Aligned_cols=72  Identities=21%  Similarity=0.298  Sum_probs=55.4

Q ss_pred             HHHHHHh--cCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChH-HHHHHHhcCCCCcEEEeeceecC
Q 035790           41 AFGYIGK--YGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDA-ALRSGLHHYYNMRFLWMSSCRLT  113 (198)
Q Consensus        41 ~L~~I~~--~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~-~l~~i~~~~~~L~~L~L~~c~iT  113 (198)
                      +|..+++  ..++|+.|.++.+.. -..||..++..||+|++|++++|.+.|- .+.- ...+++|.+|++..|++|
T Consensus        54 gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   54 GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSVT  129 (260)
T ss_pred             ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCCcc
Confidence            3444443  357999999998865 6678999999999999999999987762 2222 467889999999999844

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.07  E-value=0.0019  Score=61.40  Aligned_cols=58  Identities=19%  Similarity=0.328  Sum_probs=38.9

Q ss_pred             hcCCCCceEEecCCC----CChHHHHHHHhcCCCCcEEEeecee---cCHHHHHHHHHhCCCCcEEEecCC
Q 035790           72 EGCPKLQKLEIRDSP----FGDAALRSGLHHYYNMRFLWMSSCR---LTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        72 ~~C~~L~~L~L~~c~----~tD~~l~~i~~~~~~L~~L~L~~c~---iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      .+.++|++|||+.+.    |.|.+..  -..+++|++|.+.|++   |+..++.    +.+.|+.+....+
T Consensus       362 ~~lssL~~LdLr~N~ls~~IEDaa~~--f~gl~~LrkL~l~gNqlk~I~krAfs----gl~~LE~LdL~~N  426 (873)
T KOG4194|consen  362 VGLSSLHKLDLRSNELSWCIEDAAVA--FNGLPSLRKLRLTGNQLKSIPKRAFS----GLEALEHLDLGDN  426 (873)
T ss_pred             HHhhhhhhhcCcCCeEEEEEecchhh--hccchhhhheeecCceeeecchhhhc----cCcccceecCCCC
Confidence            356889999999884    4564432  3568999999999997   5554432    5666665555544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.04  E-value=0.0024  Score=59.38  Aligned_cols=115  Identities=17%  Similarity=0.196  Sum_probs=87.6

Q ss_pred             cHHHHHHHHh---hCCCCceeEecC-CCCHHHHHHHHhcCC----CCcEEEeeccCCChHHHHHHHhc---CCCCceEEe
Q 035790           14 MDEGFGAIVR---NCRKLTRLAVSG-LLTDRAFGYIGKYGK----LIRTLSVAFAGDSDMGLKYVLEG---CPKLQKLEI   82 (198)
Q Consensus        14 ~D~g~~ai~~---~c~~L~~L~L~g-~lTD~~L~~I~~~~~----~L~~L~L~~c~~tD~gl~~i~~~---C~~L~~L~L   82 (198)
                      .+.|+..+++   .++.|..|++++ .++|.+...+.+..+    .|++|.+..|..+++|...++..   +..|+.|++
T Consensus       100 ~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l  179 (478)
T KOG4308|consen  100 GDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDL  179 (478)
T ss_pred             ccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHH
Confidence            4446666665   467888888855 568999999987554    46788999999988887776643   678889999


Q ss_pred             cCCCCChHHHHHHHh-------cCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790           83 RDSPFGDAALRSGLH-------HYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV  128 (198)
Q Consensus        83 ~~c~~tD~~l~~i~~-------~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~  128 (198)
                      +.|.+.+.|...+..       ...++++|+++.|.+|..++..+....+..+
T Consensus       180 ~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~  232 (478)
T KOG4308|consen  180 SLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGE  232 (478)
T ss_pred             HhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccc
Confidence            999887777665533       3557999999999999999998887766544

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=95.96  E-value=0.0082  Score=34.00  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=12.2

Q ss_pred             CCcEEEeeceecCHHHHHHHHHh
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQA  123 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~  123 (198)
                      +|++|+|++|.++++|+.+|++.
T Consensus         3 ~L~~LdL~~N~i~~~G~~~L~~~   25 (28)
T smart00368        3 SLRELDLSNNKLGDEGARALAEA   25 (28)
T ss_pred             ccCEEECCCCCCCHHHHHHHHHH
Confidence            45555555555555555555543

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=95.75  E-value=0.012  Score=33.33  Aligned_cols=24  Identities=25%  Similarity=0.537  Sum_probs=18.2

Q ss_pred             CCCceEEecCCCCChHHHHHHHhc
Q 035790           75 PKLQKLEIRDSPFGDAALRSGLHH   98 (198)
Q Consensus        75 ~~L~~L~L~~c~~tD~~l~~i~~~   98 (198)
                      ++|++|+|++|.|+|+|...++..
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHH
Confidence            468888888888888887776654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.71  E-value=0.0068  Score=53.64  Aligned_cols=92  Identities=16%  Similarity=0.184  Sum_probs=65.0

Q ss_pred             CHHHHHHHHhcCCCCcEEEeeccCCCh-HHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHH
Q 035790           38 TDRAFGYIGKYGKLIRTLSVAFAGDSD-MGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQG  116 (198)
Q Consensus        38 TD~~L~~I~~~~~~L~~L~L~~c~~tD-~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~g  116 (198)
                      +...+..++..|..++.|+|+++..+| .-+.+|.++.|.|+.|+|+.|+++.. +..+.....+|++|-|.|..++-.-
T Consensus        59 ~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~  137 (418)
T KOG2982|consen   59 NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQ  137 (418)
T ss_pred             cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhh
Confidence            445677788888888888888887765 33667888888888888887765432 2233345668888888888777776


Q ss_pred             HHHHHHhCCCCcEE
Q 035790          117 CQEIAQAMPRLVVE  130 (198)
Q Consensus       117 l~~La~~~p~L~~~  130 (198)
                      ........|.+.-.
T Consensus       138 ~~s~l~~lP~vtel  151 (418)
T KOG2982|consen  138 STSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhhhcchhhhhh
Confidence            66666666665433

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.39  E-value=0.007  Score=56.37  Aligned_cols=98  Identities=21%  Similarity=0.293  Sum_probs=63.1

Q ss_pred             CCceeEecC-CCCHHHHHHHHhc---CCC-CcEEEeeccCCChHHHHHHHhcCC----CCceEEecCCCCChHHHHHH--
Q 035790           27 KLTRLAVSG-LLTDRAFGYIGKY---GKL-IRTLSVAFAGDSDMGLKYVLEGCP----KLQKLEIRDSPFGDAALRSG--   95 (198)
Q Consensus        27 ~L~~L~L~g-~lTD~~L~~I~~~---~~~-L~~L~L~~c~~tD~gl~~i~~~C~----~L~~L~L~~c~~tD~~l~~i--   95 (198)
                      ++++|++++ .+|+.....+...   .+. +..|++.++...|.|++.+.+..+    .+++++++.|.|++.+...+  
T Consensus       205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~  284 (478)
T KOG4308|consen  205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE  284 (478)
T ss_pred             cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence            466666633 3465555544432   233 555777777667777777665443    44788888888877765544  


Q ss_pred             -HhcCCCCcEEEeeceecCHHHHHHHHHhC
Q 035790           96 -LHHYYNMRFLWMSSCRLTRQGCQEIAQAM  124 (198)
Q Consensus        96 -~~~~~~L~~L~L~~c~iTd~gl~~La~~~  124 (198)
                       ..+|+.++.|.++.+.+++.+.+.+.+..
T Consensus       285 ~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l  314 (478)
T KOG4308|consen  285 VLVSCRQLEELSLSNNPLTDYGVELLLEAL  314 (478)
T ss_pred             HHhhhHHHHHhhcccCccccHHHHHHHHHh
Confidence             45677788888888888888777666543

>PLN03150 hypothetical protein; Provisional

Probab=95.29  E-value=0.026  Score=54.05  Aligned_cols=83  Identities=14%  Similarity=0.155  Sum_probs=51.5

Q ss_pred             CceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEE
Q 035790           28 LTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLW  106 (198)
Q Consensus        28 L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~  106 (198)
                      ++.|+|++ .++...-..|+ .+++|+.|+|+++..+.. +......+++|+.|+|++|.++..--.. ..++++|++|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~  496 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILN  496 (623)
T ss_pred             EEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEE
Confidence            55566632 12222222344 578899999988765321 2222356888999999988776432222 35788899999


Q ss_pred             eeceecC
Q 035790          107 MSSCRLT  113 (198)
Q Consensus       107 L~~c~iT  113 (198)
                      |++|.++
T Consensus       497 Ls~N~l~  503 (623)
T PLN03150        497 LNGNSLS  503 (623)
T ss_pred             CcCCccc
Confidence            9988754

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.13  E-value=0.0095  Score=51.15  Aligned_cols=85  Identities=13%  Similarity=0.142  Sum_probs=60.1

Q ss_pred             CCCCceeEecCC--CCHHHHHHHHhcCCCCcEEEeeccCCCh-HHHHHHHhcCCCCceEEecCCCC---ChHHHHHHHhc
Q 035790           25 CRKLTRLAVSGL--LTDRAFGYIGKYGKLIRTLSVAFAGDSD-MGLKYVLEGCPKLQKLEIRDSPF---GDAALRSGLHH   98 (198)
Q Consensus        25 c~~L~~L~L~g~--lTD~~L~~I~~~~~~L~~L~L~~c~~tD-~gl~~i~~~C~~L~~L~L~~c~~---tD~~l~~i~~~   98 (198)
                      .|+|++|.++..  --..+|..+++.||+|++|+++.+...| ..+..+ +..++|..|++.+|..   .|-- +.+..-
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl-~~l~nL~~Ldl~n~~~~~l~dyr-e~vf~l  141 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL-KELENLKSLDLFNCSVTNLDDYR-EKVFLL  141 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh-hhhcchhhhhcccCCccccccHH-HHHHHH
Confidence            567788887432  2356788999999999999999998854 223333 4578899999999954   4443 344566


Q ss_pred             CCCCcEEEeecee
Q 035790           99 YYNMRFLWMSSCR  111 (198)
Q Consensus        99 ~~~L~~L~L~~c~  111 (198)
                      +++|++|+-..+.
T Consensus       142 l~~L~~LD~~dv~  154 (260)
T KOG2739|consen  142 LPSLKYLDGCDVD  154 (260)
T ss_pred             hhhhccccccccC
Confidence            8888888755543

>PLN03150 hypothetical protein; Provisional

Probab=95.11  E-value=0.031  Score=53.56  Aligned_cols=88  Identities=9%  Similarity=0.076  Sum_probs=58.3

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      +..+++|+.|+|++ .++...=..++ .+++|+.|+|+++..+..--..+ .++++|+.|+|++|.++-.-=..+.....
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~  515 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLNGNSLSGRVPAALGGRLL  515 (623)
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECcCCcccccCChHHhhccc
Confidence            34689999999954 23332222354 68999999999987643222233 46999999999999765332122223345


Q ss_pred             CCcEEEeecee
Q 035790          101 NMRFLWMSSCR  111 (198)
Q Consensus       101 ~L~~L~L~~c~  111 (198)
                      ++..+++.++.
T Consensus       516 ~~~~l~~~~N~  526 (623)
T PLN03150        516 HRASFNFTDNA  526 (623)
T ss_pred             cCceEEecCCc
Confidence            67788888876

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=94.89  E-value=0.0016  Score=42.96  Aligned_cols=58  Identities=17%  Similarity=0.245  Sum_probs=40.2

Q ss_pred             CCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecC
Q 035790           75 PKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRS  134 (198)
Q Consensus        75 ~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~  134 (198)
                      |+|++|++++|.++.-.-. ...++++|++|+|++|+++.-.-.. ...+|+|+...+..
T Consensus         1 p~L~~L~l~~n~l~~i~~~-~f~~l~~L~~L~l~~N~l~~i~~~~-f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPD-SFSNLPNLETLDLSNNNLTSIPPDA-FSNLPNLRYLDLSN   58 (61)
T ss_dssp             TTESEEEETSSTESEECTT-TTTTGTTESEEEETSSSESEEETTT-TTTSTTESEEEETS
T ss_pred             CcCcEEECCCCCCCccCHH-HHcCCCCCCEeEccCCccCccCHHH-HcCCCCCCEEeCcC
Confidence            6899999999976543321 2467999999999999854322122 24688888776654

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.89  E-value=0.0063  Score=53.41  Aligned_cols=91  Identities=14%  Similarity=0.180  Sum_probs=68.2

Q ss_pred             CHHHHHHHHhc--CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCH-
Q 035790           38 TDRAFGYIGKY--GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTR-  114 (198)
Q Consensus        38 TD~~L~~I~~~--~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd-  114 (198)
                      |.+.+..-++.  ..+.+.|+.++|+.+|-   .|.+..+.|+.|.|+-|.|+--  +. ..+|++|+.|.|..+.|.+ 
T Consensus         5 Te~mV~~raK~sdl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL--~p-l~rCtrLkElYLRkN~I~sl   78 (388)
T KOG2123|consen    5 TESMVYIRAKCSDLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL--AP-LQRCTRLKELYLRKNCIESL   78 (388)
T ss_pred             HHHHHHHHHHhhHHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc--hh-HHHHHHHHHHHHHhcccccH
Confidence            55444444432  24788999999999884   4567899999999999988643  33 4689999999999999655 


Q ss_pred             HHHHHHHHhCCCCcEEEecCC
Q 035790          115 QGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       115 ~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +-++.|. ..|+|+.+++.++
T Consensus        79 dEL~YLk-nlpsLr~LWL~EN   98 (388)
T KOG2123|consen   79 DELEYLK-NLPSLRTLWLDEN   98 (388)
T ss_pred             HHHHHHh-cCchhhhHhhccC
Confidence            4566665 7999998888764

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=94.71  E-value=0.05  Score=51.25  Aligned_cols=88  Identities=18%  Similarity=0.175  Sum_probs=68.9

Q ss_pred             HHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCC--CC-ChHHHHHHHhcCCCCcEEEeeceec-C
Q 035790           39 DRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDS--PF-GDAALRSGLHHYYNMRFLWMSSCRL-T  113 (198)
Q Consensus        39 D~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c--~~-tD~~l~~i~~~~~~L~~L~L~~c~i-T  113 (198)
                      -.+|.++.+..+.+..++|+.+.. .=+++..+++.-|+|+.|+|+++  .+ ++..+..  .+...|++|+|.|++| |
T Consensus       207 ~~~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  207 AAVLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNPLCT  284 (585)
T ss_pred             HHHHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCcccc
Confidence            456788899999999999999888 77899999999999999999998  33 3334443  2445699999999983 3


Q ss_pred             H-----HHHHHHHHhCCCCc
Q 035790          114 R-----QGCQEIAQAMPRLV  128 (198)
Q Consensus       114 d-----~gl~~La~~~p~L~  128 (198)
                      +     +-+.+|....|+|.
T Consensus       285 tf~~~s~yv~~i~~~FPKL~  304 (585)
T KOG3763|consen  285 TFSDRSEYVSAIRELFPKLL  304 (585)
T ss_pred             chhhhHHHHHHHHHhcchhe
Confidence            2     23667778899886

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=94.70  E-value=0.0076  Score=53.52  Aligned_cols=79  Identities=16%  Similarity=0.188  Sum_probs=39.0

Q ss_pred             CCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceec-CHHHHHHHHHhCCC
Q 035790           49 GKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL-TRQGCQEIAQAMPR  126 (198)
Q Consensus        49 ~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~i-Td~gl~~La~~~p~  126 (198)
                      .++|+.|+|+++.. .=+|+..   +.-|+++|.+++|.+.+-   +...++-+|..|++++++| ..+.++.|. ..|.
T Consensus       328 L~~L~~LDLS~N~Ls~~~Gwh~---KLGNIKtL~La~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG-~LPC  400 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLAECVGWHL---KLGNIKTLKLAQNKIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIG-NLPC  400 (490)
T ss_pred             cccceEeecccchhHhhhhhHh---hhcCEeeeehhhhhHhhh---hhhHhhhhheeccccccchhhHHHhcccc-cccH
Confidence            34455555544433 2333321   233444444444433221   1134566777777777773 345566665 4676


Q ss_pred             CcEEEecC
Q 035790          127 LVVEVIRS  134 (198)
Q Consensus       127 L~~~~i~~  134 (198)
                      |++.....
T Consensus       401 LE~l~L~~  408 (490)
T KOG1259|consen  401 LETLRLTG  408 (490)
T ss_pred             HHHHhhcC
Confidence            66544443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.65  E-value=0.022  Score=50.48  Aligned_cols=83  Identities=12%  Similarity=0.148  Sum_probs=53.7

Q ss_pred             CcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCCh-HHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcE
Q 035790           52 IRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGD-AALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVV  129 (198)
Q Consensus        52 L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD-~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~  129 (198)
                      ++-|.+.+|.. +...+..++..|..+++||+.+|.|+| ..+..|.+++|.|+.|+|+.++++.. +..+-.-..+|++
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRV  125 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEE
Confidence            44556666666 444466777788888888888887776 34667778888888888888774322 2222112346667


Q ss_pred             EEecCC
Q 035790          130 EVIRSD  135 (198)
Q Consensus       130 ~~i~~~  135 (198)
                      .+.++.
T Consensus       126 lVLNgT  131 (418)
T KOG2982|consen  126 LVLNGT  131 (418)
T ss_pred             EEEcCC
Confidence            777654

>PLN03210 Resistant to P

Probab=94.53  E-value=0.024  Score=57.92  Aligned_cols=82  Identities=18%  Similarity=0.183  Sum_probs=40.0

Q ss_pred             hCCCCceeEecCC-CCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCC----------------
Q 035790           24 NCRKLTRLAVSGL-LTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDS----------------   85 (198)
Q Consensus        24 ~c~~L~~L~L~g~-lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c----------------   85 (198)
                      .+++|+.|+|++. ...+.-..++ .+++|+.|++.+|.. ..  +.. .-++++|+.|++++|                
T Consensus       776 ~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~--LP~-~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L  851 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLET--LPT-GINLESLESLDLSGCSRLRTFPDISTNISDL  851 (1153)
T ss_pred             ccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCe--eCC-CCCccccCEEECCCCCccccccccccccCEe
Confidence            3567777777542 0111111233 466777777776654 11  000 003445555555554                


Q ss_pred             -----CCChHHHHHHHhcCCCCcEEEeecee
Q 035790           86 -----PFGDAALRSGLHHYYNMRFLWMSSCR  111 (198)
Q Consensus        86 -----~~tD~~l~~i~~~~~~L~~L~L~~c~  111 (198)
                           .++.  +-.-...+++|++|+|++|+
T Consensus       852 ~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        852 NLSRTGIEE--VPWWIEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             ECCCCCCcc--ChHHHhcCCCCCEEECCCCC
Confidence                 3221  11123567777777777776

syringae 6; Provisional

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.68  E-value=0.0055  Score=59.65  Aligned_cols=37  Identities=14%  Similarity=0.085  Sum_probs=23.9

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD   62 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~   62 (198)
                      +-.+.|++|+|+. .+++..  .|- .|++|++|+|+++..
T Consensus       184 qll~ale~LnLshNk~~~v~--~Lr-~l~~LkhLDlsyN~L  221 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVD--NLR-RLPKLKHLDLSYNCL  221 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhH--HHH-hcccccccccccchh
Confidence            3456778888854 345543  443 578888888887653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=93.46  E-value=0.058  Score=53.73  Aligned_cols=91  Identities=19%  Similarity=0.214  Sum_probs=52.4

Q ss_pred             cHHHHHHHHhhCCCCceeEecC----CCCHHHHHHHHhcCCCCcEEEeeccCC---ChHH-----HH-------------
Q 035790           14 MDEGFGAIVRNCRKLTRLAVSG----LLTDRAFGYIGKYGKLIRTLSVAFAGD---SDMG-----LK-------------   68 (198)
Q Consensus        14 ~D~g~~ai~~~c~~L~~L~L~g----~lTD~~L~~I~~~~~~L~~L~L~~c~~---tD~g-----l~-------------   68 (198)
                      +|..|..+ .+.++|+.|+|+.    .+.+..+.    ..+.|++|+|+++.-   .|.-     ++             
T Consensus       372 td~c~p~l-~~~~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP  446 (1081)
T KOG0618|consen  372 TDSCFPVL-VNFKHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP  446 (1081)
T ss_pred             cccchhhh-ccccceeeeeecccccccCCHHHHh----chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech
Confidence            44444443 5667777777732    12444433    345666666666543   1110     11             


Q ss_pred             HHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790           69 YVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR  111 (198)
Q Consensus        69 ~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~  111 (198)
                      .+ ...+.|+.+||+.|.++...+.... -.++|++||++|+.
T Consensus       447 e~-~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  447 EL-AQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             hh-hhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence            11 1356788888887777777766643 23788888888886

>PLN03210 Resistant to P

Probab=93.44  E-value=0.048  Score=55.75  Aligned_cols=81  Identities=15%  Similarity=0.154  Sum_probs=39.9

Q ss_pred             hCCCCceeEecCC--CCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCC-CCChHHHHHHHhcCC
Q 035790           24 NCRKLTRLAVSGL--LTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS-PFGDAALRSGLHHYY  100 (198)
Q Consensus        24 ~c~~L~~L~L~g~--lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c-~~tD~~l~~i~~~~~  100 (198)
                      .+++|+.|+|++.  ++  .+..++ .+++|+.|+|.+|..... +..-..++++|+.|++++| .++.--  . ..+++
T Consensus       632 ~l~~Lk~L~Ls~~~~l~--~ip~ls-~l~~Le~L~L~~c~~L~~-lp~si~~L~~L~~L~L~~c~~L~~Lp--~-~i~l~  704 (1153)
T PLN03210        632 SLTGLRNIDLRGSKNLK--EIPDLS-MATNLETLKLSDCSSLVE-LPSSIQYLNKLEDLDMSRCENLEILP--T-GINLK  704 (1153)
T ss_pred             cCCCCCEEECCCCCCcC--cCCccc-cCCcccEEEecCCCCccc-cchhhhccCCCCEEeCCCCCCcCccC--C-cCCCC
Confidence            4566666666331  11  111122 356777777766654111 1111234667777777776 332211  0 01466


Q ss_pred             CCcEEEeecee
Q 035790          101 NMRFLWMSSCR  111 (198)
Q Consensus       101 ~L~~L~L~~c~  111 (198)
                      +|++|++++|.
T Consensus       705 sL~~L~Lsgc~  715 (1153)
T PLN03210        705 SLYRLNLSGCS  715 (1153)
T ss_pred             CCCEEeCCCCC
Confidence            67777777664

syringae 6; Provisional

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=93.20  E-value=0.071  Score=47.50  Aligned_cols=92  Identities=15%  Similarity=0.058  Sum_probs=61.6

Q ss_pred             hCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChH-HHHHHHhcCCC
Q 035790           24 NCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDA-ALRSGLHHYYN  101 (198)
Q Consensus        24 ~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~-~l~~i~~~~~~  101 (198)
                      ..++|++|+|++. +-..+.-.-....|++.|.|+.+.. +=.|+..    .-+|..||+++|+|..- .+.. +.++|.
T Consensus       327 ~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~K----LYSLvnLDl~~N~Ie~ldeV~~-IG~LPC  400 (490)
T KOG1259|consen  327 ELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQNKIETLSGLRK----LYSLVNLDLSSNQIEELDEVNH-IGNLPC  400 (490)
T ss_pred             hcccceEeecccc-hhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHh----hhhheeccccccchhhHHHhcc-cccccH
Confidence            4455555555543 2333333445677999999998776 5566654    44689999999988653 3444 578999


Q ss_pred             CcEEEeecee---cCHHHHHHHH
Q 035790          102 MRFLWMSSCR---LTRQGCQEIA  121 (198)
Q Consensus       102 L~~L~L~~c~---iTd~gl~~La  121 (198)
                      |+.|.|.+++   +-|---+.++
T Consensus       401 LE~l~L~~NPl~~~vdYRTKVLa  423 (490)
T KOG1259|consen  401 LETLRLTGNPLAGSVDYRTKVLA  423 (490)
T ss_pred             HHHHhhcCCCccccchHHHHHHH
Confidence            9999999998   3444444444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=93.03  E-value=0.016  Score=57.57  Aligned_cols=74  Identities=19%  Similarity=0.167  Sum_probs=42.3

Q ss_pred             cEEEeeccCCChHHHHHHHhcCCCCceEEecCCC---CChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcE
Q 035790           53 RTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSP---FGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVV  129 (198)
Q Consensus        53 ~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~---~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~  129 (198)
                      +.|.++.+..+|.-+..+ .+.++|+.|+|++|.   |.+..+    .+++.|+.|+|+|++++.-. ..++ .|+.|++
T Consensus       362 q~LylanN~Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNkL~~Lp-~tva-~~~~L~t  434 (1081)
T KOG0618|consen  362 QELYLANNHLTDSCFPVL-VNFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNKLTTLP-DTVA-NLGRLHT  434 (1081)
T ss_pred             HHHHHhcCcccccchhhh-ccccceeeeeecccccccCCHHHH----hchHHhHHHhcccchhhhhh-HHHH-hhhhhHH
Confidence            334444444466666543 567788888888873   555543    35677888888888744433 2222 3455544


Q ss_pred             EEec
Q 035790          130 EVIR  133 (198)
Q Consensus       130 ~~i~  133 (198)
                      +...
T Consensus       435 L~ah  438 (1081)
T KOG0618|consen  435 LRAH  438 (1081)
T ss_pred             Hhhc
Confidence            4433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=91.35  E-value=0.22  Score=41.87  Aligned_cols=93  Identities=16%  Similarity=0.188  Sum_probs=49.6

Q ss_pred             CCHHHHHHHHh--cCCCCcEEEeeccCC--ChHHHHHHHhcCCCCceEEecCCCCChHH-HHHHHhcCCCCcEEEeecee
Q 035790           37 LTDRAFGYIGK--YGKLIRTLSVAFAGD--SDMGLKYVLEGCPKLQKLEIRDSPFGDAA-LRSGLHHYYNMRFLWMSSCR  111 (198)
Q Consensus        37 lTD~~L~~I~~--~~~~L~~L~L~~c~~--tD~gl~~i~~~C~~L~~L~L~~c~~tD~~-l~~i~~~~~~L~~L~L~~c~  111 (198)
                      +||..+..+..  +.++|++|.|+++..  -|.++..+   .++|+.|.+.+|.+-.-| +.- ...||+|++|.+-++.
T Consensus        49 LtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   49 LTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP  124 (233)
T ss_pred             ccccchhhcccCCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence            35555555432  456777777777666  34444443   456777777766443222 222 2356677777777776


Q ss_pred             cCHHH-HH-HHHHhCCCCcEEEec
Q 035790          112 LTRQG-CQ-EIAQAMPRLVVEVIR  133 (198)
Q Consensus       112 iTd~g-l~-~La~~~p~L~~~~i~  133 (198)
                      ++... .+ .+.-..|+|++....
T Consensus       125 v~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  125 VEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             hhcccCceeEEEEecCcceEeehh
Confidence            65542 21 233344555544443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=90.02  E-value=0.069  Score=48.32  Aligned_cols=60  Identities=17%  Similarity=0.178  Sum_probs=36.5

Q ss_pred             cCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCH
Q 035790           48 YGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTR  114 (198)
Q Consensus        48 ~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd  114 (198)
                      .+++|+.|+|+++.. +-.|+..+    +.|+.|++++|.+++-.-.   ..++.|+.++++++++++
T Consensus       116 ~~~~L~~L~ls~N~I~~i~~l~~l----~~L~~L~l~~N~i~~~~~~---~~l~~L~~l~l~~n~i~~  176 (414)
T KOG0531|consen  116 SLVNLQVLDLSFNKITKLEGLSTL----TLLKELNLSGNLISDISGL---ESLKSLKLLDLSYNRIVD  176 (414)
T ss_pred             hhhcchheeccccccccccchhhc----cchhhheeccCcchhccCC---ccchhhhcccCCcchhhh
Confidence            567777777777776 55555443    3377777777766543311   126666677777776444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=89.71  E-value=0.25  Score=41.52  Aligned_cols=82  Identities=11%  Similarity=0.064  Sum_probs=57.5

Q ss_pred             CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee-cCHHHHHHHHHhCCCC
Q 035790           49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRL  127 (198)
Q Consensus        49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~-iTd~gl~~La~~~p~L  127 (198)
                      ..++..++|..+..   +......+.+.|..|.+.+|.|++-+ ..+..-.++|..|.+.+++ .--..+.-++ .||.|
T Consensus        41 ~d~~d~iDLtdNdl---~~l~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L  115 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDL---RKLDNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKL  115 (233)
T ss_pred             ccccceecccccch---hhcccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhc-cCCcc
Confidence            45666677765433   22233456889999999999887543 2234457889999999999 4445577777 79999


Q ss_pred             cEEEecCC
Q 035790          128 VVEVIRSD  135 (198)
Q Consensus       128 ~~~~i~~~  135 (198)
                      +...+-++
T Consensus       116 ~~Ltll~N  123 (233)
T KOG1644|consen  116 EYLTLLGN  123 (233)
T ss_pred             ceeeecCC
Confidence            87777665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=89.63  E-value=0.13  Score=50.38  Aligned_cols=34  Identities=21%  Similarity=0.335  Sum_probs=20.3

Q ss_pred             CCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790           75 PKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR  111 (198)
Q Consensus        75 ~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~  111 (198)
                      +.|+.|+|+.|.|++..   ....|++|++|||+.|.
T Consensus       187 ~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~  220 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNC  220 (1096)
T ss_pred             HHhhhhccchhhhhhhH---HHHhcccccccccccch
Confidence            35666666666666554   13456666666666664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=88.92  E-value=0.36  Score=47.74  Aligned_cols=9  Identities=33%  Similarity=0.305  Sum_probs=4.9

Q ss_pred             CCCCceeEe
Q 035790           25 CRKLTRLAV   33 (198)
Q Consensus        25 c~~L~~L~L   33 (198)
                      .++|++|++
T Consensus       241 p~~Lk~LdL  249 (788)
T PRK15387        241 PPELRTLEV  249 (788)
T ss_pred             CCCCcEEEe
Confidence            345555555

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=88.74  E-value=0.24  Score=48.98  Aligned_cols=54  Identities=17%  Similarity=0.040  Sum_probs=28.5

Q ss_pred             CCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecC
Q 035790           50 KLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLT  113 (198)
Q Consensus        50 ~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iT  113 (198)
                      .+|+.|+++++..+.  +.   ...++|+.|++++|.++.  +   ..-..+|+.|++++|.++
T Consensus       382 ~~L~~LdLs~N~Lt~--LP---~l~s~L~~LdLS~N~Lss--I---P~l~~~L~~L~Ls~NqLt  435 (788)
T PRK15387        382 SGLKELIVSGNRLTS--LP---VLPSELKELMVSGNRLTS--L---PMLPSGLLSLSVYRNQLT  435 (788)
T ss_pred             cccceEEecCCcccC--CC---CcccCCCEEEccCCcCCC--C---CcchhhhhhhhhccCccc
Confidence            467777777665431  11   113467777777776542  1   111234555666665543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=88.43  E-value=0.099  Score=47.31  Aligned_cols=88  Identities=16%  Similarity=0.089  Sum_probs=61.5

Q ss_pred             HhhCCCCceeEecC-CCC-HHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhc
Q 035790           22 VRNCRKLTRLAVSG-LLT-DRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHH   98 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lT-D~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~   98 (198)
                      ...+++|+.|++++ .|+ -.++..    ++.|+.|++.++.. +-.++..    +++|+.++++++.+++-.-.. ..+
T Consensus       114 l~~~~~L~~L~ls~N~I~~i~~l~~----l~~L~~L~l~~N~i~~~~~~~~----l~~L~~l~l~~n~i~~ie~~~-~~~  184 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKLEGLST----LTLLKELNLSGNLISDISGLES----LKSLKLLDLSYNRIVDIENDE-LSE  184 (414)
T ss_pred             hhhhhcchheeccccccccccchhh----ccchhhheeccCcchhccCCcc----chhhhcccCCcchhhhhhhhh-hhh
Confidence            45689999999965 333 234443    44599999999887 3334433    789999999999877655422 467


Q ss_pred             CCCCcEEEeecee-cCHHHHH
Q 035790           99 YYNMRFLWMSSCR-LTRQGCQ  118 (198)
Q Consensus        99 ~~~L~~L~L~~c~-iTd~gl~  118 (198)
                      +.+|+.+++.++. ..-.++.
T Consensus       185 ~~~l~~l~l~~n~i~~i~~~~  205 (414)
T KOG0531|consen  185 LISLEELDLGGNSIREIEGLD  205 (414)
T ss_pred             ccchHHHhccCCchhcccchH
Confidence            8899999999998 3334444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.33  E-value=0.36  Score=24.08  Aligned_cols=12  Identities=17%  Similarity=0.553  Sum_probs=4.5

Q ss_pred             CCceEEecCCCC
Q 035790           76 KLQKLEIRDSPF   87 (198)
Q Consensus        76 ~L~~L~L~~c~~   87 (198)
                      +|++|+|++|.+
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            445555555443

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=87.02  E-value=0.12  Score=50.13  Aligned_cols=56  Identities=13%  Similarity=0.154  Sum_probs=35.9

Q ss_pred             CCCcEEEeeccCC--ChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790           50 KLIRTLSVAFAGD--SDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR  111 (198)
Q Consensus        50 ~~L~~L~L~~c~~--tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~  111 (198)
                      .||..++++.+..  -.+.+    -+.++|++|+|+++.|++-.+-.  ....+|++|+|+.++
T Consensus       222 ~NL~dvDlS~N~Lp~vPecl----y~l~~LrrLNLS~N~iteL~~~~--~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  222 HNLRDVDLSENNLPIVPECL----YKLRNLRRLNLSGNKITELNMTE--GEWENLETLNLSRNQ  279 (1255)
T ss_pred             hhhhhccccccCCCcchHHH----hhhhhhheeccCcCceeeeeccH--HHHhhhhhhccccch
Confidence            4555555555433  12222    24578888999888887765432  456788899999888

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=86.75  E-value=0.096  Score=41.76  Aligned_cols=89  Identities=20%  Similarity=0.279  Sum_probs=55.7

Q ss_pred             HHHHHHHhhCCC---CceeEecCC----CCHHHHHHHHhcCCCCcEEEeeccCCChHHHH----HHHhcCCCCceEEecC
Q 035790           16 EGFGAIVRNCRK---LTRLAVSGL----LTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLK----YVLEGCPKLQKLEIRD   84 (198)
Q Consensus        16 ~g~~ai~~~c~~---L~~L~L~g~----lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~----~i~~~C~~L~~L~L~~   84 (198)
                      .|+..++++|..   +-.++|+..    +-|. +..+. ....|+..+|+.     .+++    .+....+.++.|++++
T Consensus        14 rgV~evVercedakE~h~ldLssc~lm~i~da-vy~l~-~~~el~~i~ls~-----N~fk~fp~kft~kf~t~t~lNl~~   86 (177)
T KOG4579|consen   14 RGVNEVVERCEDAKELHFLDLSSCQLMYIADA-VYMLS-KGYELTKISLSD-----NGFKKFPKKFTIKFPTATTLNLAN   86 (177)
T ss_pred             hhHHHHHHhhHHHHHhhhcccccchhhHHHHH-HHHHh-CCceEEEEeccc-----chhhhCCHHHhhccchhhhhhcch
Confidence            567777777753   444444321    2232 23333 345666666655     4555    4455567888888888


Q ss_pred             CCCChHHHHHHHhcCCCCcEEEeeceecC
Q 035790           85 SPFGDAALRSGLHHYYNMRFLWMSSCRLT  113 (198)
Q Consensus        85 c~~tD~~l~~i~~~~~~L~~L~L~~c~iT  113 (198)
                      +.++|--.+  ...++.||+|+++.++++
T Consensus        87 neisdvPeE--~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   87 NEISDVPEE--LAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             hhhhhchHH--HhhhHHhhhcccccCccc
Confidence            888877655  346888888888888754

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=86.13  E-value=0.76  Score=46.11  Aligned_cols=77  Identities=19%  Similarity=0.134  Sum_probs=34.3

Q ss_pred             CCCCcEEEeeccCCC--hHHHHHHHhcCCCCceEEecCCC-C-ChHHHHHHHhcCCCCcEEEeecee--cCHHHHHHHHH
Q 035790           49 GKLIRTLSVAFAGDS--DMGLKYVLEGCPKLQKLEIRDSP-F-GDAALRSGLHHYYNMRFLWMSSCR--LTRQGCQEIAQ  122 (198)
Q Consensus        49 ~~~L~~L~L~~c~~t--D~gl~~i~~~C~~L~~L~L~~c~-~-tD~~l~~i~~~~~~L~~L~L~~c~--iTd~gl~~La~  122 (198)
                      .-+|+.|++..+..+  ..|+..    +++|.+|++..+. . +-   ..+...+.+||+|.+..-.  .+..-+..+ .
T Consensus       594 Li~LryL~L~~t~I~~LP~~l~~----Lk~L~~Lnl~~~~~l~~~---~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~  665 (889)
T KOG4658|consen  594 LVHLRYLDLSDTGISHLPSGLGN----LKKLIYLNLEVTGRLESI---PGILLELQSLRVLRLPRSALSNDKLLLKEL-E  665 (889)
T ss_pred             hhhhhcccccCCCccccchHHHH----HHhhheeccccccccccc---cchhhhcccccEEEeeccccccchhhHHhh-h
Confidence            345555555554442  233322    3355555555441 1 11   1223346677777766654  222223333 3


Q ss_pred             hCCCCcEEEec
Q 035790          123 AMPRLVVEVIR  133 (198)
Q Consensus       123 ~~p~L~~~~i~  133 (198)
                      ...+|+...+.
T Consensus       666 ~Le~L~~ls~~  676 (889)
T KOG4658|consen  666 NLEHLENLSIT  676 (889)
T ss_pred             cccchhhheee
Confidence            44555544443

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=84.98  E-value=1.8  Score=41.18  Aligned_cols=92  Identities=17%  Similarity=0.202  Sum_probs=68.0

Q ss_pred             CcHHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCC---ChHHHHHHHhcCCCCceEEecCCCC
Q 035790           13 PMDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGD---SDMGLKYVLEGCPKLQKLEIRDSPF   87 (198)
Q Consensus        13 ~~D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~---tD~gl~~i~~~C~~L~~L~L~~c~~   87 (198)
                      .|-..+..+....|.+..++|+.  +..=+.+..|++..|+|+.|+|+.+..   ++.-+..+  +-..|++|-+.+|++
T Consensus       205 ~M~~~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPl  282 (585)
T KOG3763|consen  205 CMAAVLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPL  282 (585)
T ss_pred             hhHHHHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCcc
Confidence            45556677778899999999954  445577888999999999999999843   44455544  345699999999975


Q ss_pred             ----ChHH--HHHHHhcCCCCcEEE
Q 035790           88 ----GDAA--LRSGLHHYYNMRFLW  106 (198)
Q Consensus        88 ----tD~~--l~~i~~~~~~L~~L~  106 (198)
                          +|.+  +.+|-..+|+|..||
T Consensus       283 c~tf~~~s~yv~~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  283 CTTFSDRSEYVSAIRELFPKLLRLD  307 (585)
T ss_pred             ccchhhhHHHHHHHHHhcchheeec
Confidence                4443  445567889998776

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.22  E-value=1.6  Score=40.47  Aligned_cols=41  Identities=29%  Similarity=0.304  Sum_probs=24.2

Q ss_pred             HHHHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccC
Q 035790           19 GAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAG   61 (198)
Q Consensus        19 ~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~   61 (198)
                      .+++...++|..|+|+. .+.|--++ .+ ....|+.|+++++.
T Consensus       428 ~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~-~lv~Lq~LnlS~Nr  469 (565)
T KOG0472|consen  428 PLELSQLQKLTFLDLSNNLLNDLPEE-MG-SLVRLQTLNLSFNR  469 (565)
T ss_pred             hHHHHhhhcceeeecccchhhhcchh-hh-hhhhhheecccccc
Confidence            45566778888888854 33332222 22 13348888888753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=84.19  E-value=0.043  Score=53.10  Aligned_cols=104  Identities=24%  Similarity=0.261  Sum_probs=63.5

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHH-HHHhcCCCCceEEecCCCCChHHHH-------
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLK-YVLEGCPKLQKLEIRDSPFGDAALR-------   93 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~-~i~~~C~~L~~L~L~~c~~tD~~l~-------   93 (198)
                      ...++|++|+|++ .+|.-.+. ++ .-.+|++|+++++..+.  +- ++. ++++|++|-+.++.++=+|+-       
T Consensus       242 y~l~~LrrLNLS~N~iteL~~~-~~-~W~~lEtLNlSrNQLt~--LP~avc-KL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  242 YKLRNLRRLNLSGNKITELNMT-EG-EWENLETLNLSRNQLTV--LPDAVC-KLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             hhhhhhheeccCcCceeeeecc-HH-HHhhhhhhccccchhcc--chHHHh-hhHHHHHHHhccCcccccCCccchhhhh
Confidence            4567888888866 34543332 33 35788888888876521  11 222 366788887777754433221       


Q ss_pred             ----------------HHHhcCCCCcEEEeecee-cCHH-HHHHHHHhCCCCcEEEecCC
Q 035790           94 ----------------SGLHHYYNMRFLWMSSCR-LTRQ-GCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        94 ----------------~i~~~~~~L~~L~L~~c~-iTd~-gl~~La~~~p~L~~~~i~~~  135 (198)
                                      .....|..|+.|.|+.++ ||-- |+.    -.|.|+++.+.++
T Consensus       317 ~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIH----lL~~l~vLDlreN  372 (1255)
T KOG0444|consen  317 QLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIH----LLPDLKVLDLREN  372 (1255)
T ss_pred             hhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhh----hcCCcceeeccCC
Confidence                            113578889999999998 7753 433    3466777666655

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=82.19  E-value=3.2  Score=37.20  Aligned_cols=87  Identities=15%  Similarity=0.148  Sum_probs=44.6

Q ss_pred             CHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcC---CCCceEEecCCCCChH---HHHHHHhcCCCCcEEEeece
Q 035790           38 TDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGC---PKLQKLEIRDSPFGDA---ALRSGLHHYYNMRFLWMSSC  110 (198)
Q Consensus        38 TD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C---~~L~~L~L~~c~~tD~---~l~~i~~~~~~L~~L~L~~c  110 (198)
                      +++.++-|...-++|+..+|..... +-.-+..++...   ...+...+.+-..+|.   ++.....-++.|++|++.++
T Consensus       186 ~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesn  265 (353)
T KOG3735|consen  186 VESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESN  265 (353)
T ss_pred             HHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccc
Confidence            4555666665556666666655554 444444444332   2233334433334443   23333455566666666666


Q ss_pred             ecCHHHHHHHHHhC
Q 035790          111 RLTRQGCQEIAQAM  124 (198)
Q Consensus       111 ~iTd~gl~~La~~~  124 (198)
                      -||..|+-++.+..
T Consensus       266 FItg~gi~a~~~al  279 (353)
T KOG3735|consen  266 FITGLGIMALLRAL  279 (353)
T ss_pred             ccccHHHHHHHHHH
Confidence            66666666655443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=82.17  E-value=0.84  Score=45.82  Aligned_cols=59  Identities=20%  Similarity=0.148  Sum_probs=29.1

Q ss_pred             CCCCcEEEeeccCC--ChHHHHHHHhcCCCCceEEecCCC-CChHHHHHHHhcCCCCcEEEeece
Q 035790           49 GKLIRTLSVAFAGD--SDMGLKYVLEGCPKLQKLEIRDSP-FGDAALRSGLHHYYNMRFLWMSSC  110 (198)
Q Consensus        49 ~~~L~~L~L~~c~~--tD~gl~~i~~~C~~L~~L~L~~c~-~tD~~l~~i~~~~~~L~~L~L~~c  110 (198)
                      .++|.+|++.++..  +-   ..+....++||.|.+.... -.|..+..-..++++|+.|.....
T Consensus       617 Lk~L~~Lnl~~~~~l~~~---~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  617 LKKLIYLNLEVTGRLESI---PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             HHhhheeccccccccccc---cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence            34556666666554  22   2333446677777776553 222222222355555555555433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=81.74  E-value=0.67  Score=42.60  Aligned_cols=82  Identities=18%  Similarity=0.253  Sum_probs=48.7

Q ss_pred             HhhCCCCceeEecC-CC---CHHHHHHHHhcCCCCcEEEeeccCC-C-hHHHHHHHhcCCCCceEEecCCCCChHHHHHH
Q 035790           22 VRNCRKLTRLAVSG-LL---TDRAFGYIGKYGKLIRTLSVAFAGD-S-DMGLKYVLEGCPKLQKLEIRDSPFGDAALRSG   95 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~l---TD~~L~~I~~~~~~L~~L~L~~c~~-t-D~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i   95 (198)
                      .+..++|++|+|++ .+   -|..|+    ....+++|.|..+.. . ..|   +.++...|+.|+|++++||--+-.+ 
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe----~~a~l~eL~L~~N~l~~v~~~---~f~~ls~L~tL~L~~N~it~~~~~a-  341 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFE----GAAELQELYLTRNKLEFVSSG---MFQGLSGLKTLSLYDNQITTVAPGA-  341 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhc----chhhhhhhhcCcchHHHHHHH---hhhccccceeeeecCCeeEEEeccc-
Confidence            56778888888855 22   333443    344677777766554 1 112   2356777888888888765433222 


Q ss_pred             HhcCCCCcEEEeecee
Q 035790           96 LHHYYNMRFLWMSSCR  111 (198)
Q Consensus        96 ~~~~~~L~~L~L~~c~  111 (198)
                      .....+|.+|++-++.
T Consensus       342 F~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  342 FQTLFSLSTLNLLSNP  357 (498)
T ss_pred             ccccceeeeeehccCc
Confidence            2456677777776655

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=81.69  E-value=0.7  Score=40.96  Aligned_cols=58  Identities=16%  Similarity=0.189  Sum_probs=34.1

Q ss_pred             CCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceec
Q 035790           51 LIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL  112 (198)
Q Consensus        51 ~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~i  112 (198)
                      +|+.|+++++...+.- .. ...+++|+.|++++|++++-.-..  ...+.|+.|+++++.+
T Consensus       141 nL~~L~l~~N~i~~l~-~~-~~~l~~L~~L~l~~N~l~~l~~~~--~~~~~L~~L~ls~N~i  198 (394)
T COG4886         141 NLKELDLSDNKIESLP-SP-LRNLPNLKNLDLSFNDLSDLPKLL--SNLSNLNNLDLSGNKI  198 (394)
T ss_pred             hcccccccccchhhhh-hh-hhccccccccccCCchhhhhhhhh--hhhhhhhheeccCCcc
Confidence            6777777665442210 11 245777777777777766654221  2566677777777763

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=80.80  E-value=1.1  Score=41.16  Aligned_cols=18  Identities=11%  Similarity=0.200  Sum_probs=13.6

Q ss_pred             HhcCCCCcEEEeeceecC
Q 035790           96 LHHYYNMRFLWMSSCRLT  113 (198)
Q Consensus        96 ~~~~~~L~~L~L~~c~iT  113 (198)
                      ...+..|+.|+|.+++||
T Consensus       318 f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  318 FQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             hhccccceeeeecCCeeE
Confidence            356778888888888844

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=80.32  E-value=2.4  Score=23.42  Aligned_cols=25  Identities=12%  Similarity=0.270  Sum_probs=14.5

Q ss_pred             CCcEEEeecee-cCHHHHHHHHHhCC
Q 035790          101 NMRFLWMSSCR-LTRQGCQEIAQAMP  125 (198)
Q Consensus       101 ~L~~L~L~~c~-iTd~gl~~La~~~p  125 (198)
                      +|++|.|.... -.++.++.+..+||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            36666666666 33335666666665

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=80.18  E-value=3.3  Score=40.93  Aligned_cols=97  Identities=13%  Similarity=0.160  Sum_probs=59.2

Q ss_pred             CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHH-HHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCc
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLK-YVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMR  103 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~-~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~  103 (198)
                      ++|+.|.+++ .++.  +.  ...+++|+.|++++|..+.  +. .+   .++|+.|+|++|.++.-- ..+.   ++|+
T Consensus       325 ~sL~~L~Ls~N~Lt~--LP--~~l~~sL~~L~Ls~N~L~~--LP~~l---p~~L~~LdLs~N~Lt~LP-~~l~---~sL~  391 (754)
T PRK15370        325 PGLKTLEAGENALTS--LP--ASLPPELQVLDVSKNQITV--LPETL---PPTITTLDVSRNALTNLP-ENLP---AALQ  391 (754)
T ss_pred             ccceeccccCCcccc--CC--hhhcCcccEEECCCCCCCc--CChhh---cCCcCEEECCCCcCCCCC-HhHH---HHHH
Confidence            5788888844 2221  11  0124799999999987631  11 12   268999999999765311 0111   2588


Q ss_pred             EEEeeceecCH--HHHHHHHHhCCCCcEEEecCC
Q 035790          104 FLWMSSCRLTR--QGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       104 ~L~L~~c~iTd--~gl~~La~~~p~L~~~~i~~~  135 (198)
                      .|++++|+++.  ..+..+....|.+....+..+
T Consensus       392 ~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N  425 (754)
T PRK15370        392 IMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN  425 (754)
T ss_pred             HHhhccCCcccCchhHHHHhhcCCCccEEEeeCC
Confidence            88999888542  245555555677776666665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
2p1m_B	594	Tir1-ask1 Complex Structure Length = 594		9e-39
3ogk_B	592	Structure Of Coi1-Ask1 In Complex With Coronatine A		6e-19

>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594

Iteration: 1
 Score =  156 bits (394), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 85/162 (52%), Positives = 109/162 (67%), Gaps = 3/162 (1%)
Query: 6   PDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDM 65
           PD+ T EP+D GFGAIV +C+ L RL++SGLLTD+ F YIG Y K +  LSVAFAGDSD+
Sbjct: 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471
Query: 66  GLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMP 125
           G+ +VL GC  L+KLEIRD PFGD AL +       MR LWMSSC ++   C+ + Q MP
Sbjct: 472 GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMP 531
Query: 126 RLVVEVIR---SDDEEETDNYVETLYMYRSLEGPRHDAPKFV 164
           +L VEVI    + D       VE +++YR++ GPR D P FV
Sbjct: 532 KLNVEVIDERGAPDSRPESCPVERVFIYRTVAGPRFDMPGFV 573

>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 11/175 (6%)
Query: 5   RPDHATGEPMDEGFGAIVRNCRKLTRLAV---SGLLTDRAFGYIGKYGKLIRTLSVAFAG 61
           R +  T  P+D G  +++  C+KL R A     G LTD    YIG+Y   +R + + + G
Sbjct: 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474
Query: 62  DSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIA 121
           +SD GL     GCP LQKLE+R   F + A+ + +    ++R+LW+   R +  G   + 
Sbjct: 475 ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534
Query: 122 QAMPRLVVEVIRSDDEEETDNYVETLYM--------YRSLEGPRHDAPKFVTILR 168
            A P   +E+I S    E +   E   M        Y SL G R D P  V +L+
Sbjct: 535 MARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLAGQRTDCPTTVRVLK 589

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-56
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-49
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-12
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-04

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  185 bits (471), Expect = 5e-56
 Identities = 84/171 (49%), Positives = 111/171 (64%), Gaps = 3/171 (1%)

Query: 1   MGRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA 60
           +    PD+ T EP+D GFGAIV +C+ L RL++SGLLTD+ F YIG Y K +  LSVAFA
Sbjct: 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFA 466

Query: 61  GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
           GDSD+G+ +VL GC  L+KLEIRD PFGD AL +       MR LWMSSC ++   C+ +
Sbjct: 467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLL 526

Query: 121 AQAMPRLVVEVIRSDDEEETDNY---VETLYMYRSLEGPRHDAPKFVTILR 168
            Q MP+L VEVI      ++      VE +++YR++ GPR D P FV  + 
Sbjct: 527 GQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMD 577

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 64.9 bits (158), Expect = 9e-13
 Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 8/140 (5%)

Query: 15  DEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVA---FAGDSDMGLKY 69
           D+    I ++ +    L +S     +      I    + ++ L +        S   L +
Sbjct: 119 DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178

Query: 70  VLEGCPKLQKLEIRD--SPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRL 127
             +    L  L I    S    +AL   +    N++ L ++      +    + Q  P+L
Sbjct: 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV-PLEKLATLLQRAPQL 237

Query: 128 VVEVIRSDDEEETDNYVETL 147
                     E   +    L
Sbjct: 238 EELGTGGYTAEVRPDVYSGL 257

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.0 bits (153), Expect = 4e-12
 Identities = 27/132 (20%), Positives = 42/132 (31%), Gaps = 19/132 (14%)

Query: 15  DEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGD---------SDM 65
                 ++  C KL RL V   + D     +    K +R L V  +           ++ 
Sbjct: 303 SYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ 362

Query: 66  GLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSC----------RLTRQ 115
           GL  V  GCPKL+ +        +AAL +   +  NM    +                  
Sbjct: 363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422

Query: 116 GCQEIAQAMPRL 127
           G   I +    L
Sbjct: 423 GFGAIVEHCKDL 434

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 10/129 (7%)

Query: 8   HATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGL 67
                 +  G    +  C++L  L+            +      + TL++++A      L
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL 306

Query: 68  KYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR---------LTRQGCQ 118
             +L  CPKLQ+L + D    DA L        ++R L +             LT QG  
Sbjct: 307 VKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365

Query: 119 EIAQAMPRL 127
            ++   P+L
Sbjct: 366 SVSMGCPKL 374

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 59.5 bits (144), Expect = 7e-11
 Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 6/118 (5%)

Query: 15  DEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAF-----AGDSDMGLKY 69
                 +V  C  L  L ++  +       + +    +  L           D   GL  
Sbjct: 200 FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259

Query: 70  VLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRL 127
            L GC +L+ L         A L +       +  L +S   +      ++    P+L
Sbjct: 260 ALSGCKELRCLS-GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL 316

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 9/142 (6%)

Query: 15  DEGFGAIVRNCRKLTRLAVSGL----LTDRAFGYIGKYGKLIRTLSVAFAGD--SDMGLK 68
            +G  AI   CR L  L +       ++     +       + +L+++      S   L+
Sbjct: 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204

Query: 69  YVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR--LTRQGCQEIAQAMPR 126
            ++  CP L+ L++  +      L + L     +  L        +       ++ A+  
Sbjct: 205 RLVTRCPNLKSLKLNRAV-PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263

Query: 127 LVVEVIRSDDEEETDNYVETLY 148
                  S   +    Y+  +Y
Sbjct: 264 CKELRCLSGFWDAVPAYLPAVY 285

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 21/150 (14%), Positives = 49/150 (32%), Gaps = 16/150 (10%)

Query: 2   GRHRPDHATGEPMDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAF 59
              R     G         ++R   K+  + + G     D               +   +
Sbjct: 42  RWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNL------------VPDGW 89

Query: 60  AGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR-LTRQGCQ 118
            G     ++ +      L+++ ++     D  L      + N + L +SSC   +  G  
Sbjct: 90  GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA 149

Query: 119 EIAQAMPRL-VVEVIRSDDEEETDNYVETL 147
            IA     L  +++  SD ++ + +++   
Sbjct: 150 AIAATCRNLKELDLRESDVDDVSGHWLSHF 179

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  167 bits (424), Expect = 3e-49
 Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 4   HRPDHATGEPMDEGFGAIVRNCRKLTRLAV---SGLLTDRAFGYIGKYGKLIRTLSVAFA 60
            R +  T  P+D G  +++  C+KL R A     G LTD    YIG+Y   +R + + + 
Sbjct: 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473

Query: 61  GDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
           G+SD GL     GCP LQKLE+R   F + A+ + +    ++R+LW+   R +  G   +
Sbjct: 474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533

Query: 121 AQAMPRLVVEVIR-SDDEEETDN-------YVETLYMYRSLEGPRHDAPKFVTILR 168
             A P   +E+I      E           +   +  Y SL G R D P  V +L+
Sbjct: 534 QMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLAGQRTDCPTTVRVLK 589

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 66.1 bits (161), Expect = 4e-13
 Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 20/160 (12%)

Query: 15  DEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGD-----------S 63
            E    +++ C  L  L    ++ DR    + +Y K ++ L +    D           S
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

Query: 64  DMGLKYVLEGCPKLQKLEIRDSPFGDAALR---SGLHHYYNMRFLWMSSCR-----LTRQ 115
             GL  + +GC +L+ + +  S   + +L    + L +  + R + +             
Sbjct: 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426

Query: 116 GCQEIAQAMPRLVVEVIRSDDEEETDNYVETLYMY-RSLE 154
           G + +     +L            TD  +  +  Y  ++ 
Sbjct: 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 15/127 (11%)

Query: 14  MDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVL 71
                  +     ++ +L +    L T+     I K   L   L        D GL+ + 
Sbjct: 281 GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL-EVLETRNVI-GDRGLEVLA 338

Query: 72  EGCPKLQKLEIR-----------DSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEI 120
           + C +L++L I            +       L +       + ++ +    +T +  + I
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398

Query: 121 AQAMPRL 127
              +  L
Sbjct: 399 GTYLKNL 405

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 9/126 (7%)

Query: 11  GEPMDEGFGAIVRNCRKLTRLAVSGL-LTDRAFGYIGK-YGKLIRTLSVAF-AGDSDMGL 67
           G  +      I  N R+L  +    + ++D     + K     + TL +   +G +  GL
Sbjct: 97  GGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGL 156

Query: 68  KYVLEGCPKLQKLEIRDSPFGD------AALRSGLHHYYNMRFLWMSSCRLTRQGCQEIA 121
             ++  C K++ L + +S F +        L         + F      +++ +  + IA
Sbjct: 157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216

Query: 122 QAMPRL 127
           +    L
Sbjct: 217 RNCRSL 222

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 25/137 (18%)

Query: 15  DEGFGAIVRNCRKLTRLAVSG--LLTDRAF-------------------GYIGKYGKLIR 53
            +    I RNCR L  + V    +L    F                   G   KY  L+ 
Sbjct: 209 PKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268

Query: 54  TLSVAFAG---DSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSC 110
              +   G        +  +     +++KL++  +        + +    N+  L   + 
Sbjct: 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV 328

Query: 111 RLTRQGCQEIAQAMPRL 127
            +  +G + +AQ   +L
Sbjct: 329 -IGDRGLEVLAQYCKQL 344

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 6e-07
 Identities = 16/128 (12%), Positives = 37/128 (28%), Gaps = 22/128 (17%)

Query: 15  DEGFGAIVRNCRKLTRLAVSGL----LTDRAFGYIGKYGKLIRTLSVAFAGD---SDMGL 67
            +G  +IV +CRK+  L +          +    + ++   +  L+         S   L
Sbjct: 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212

Query: 68  KYVLEGCPKLQKLEIRDSPF-GDAALRSGLHHYYNMRFLWMSSC--------------RL 112
           + +   C  L  +++ D              +        ++                +L
Sbjct: 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272

Query: 113 TRQGCQEI 120
            R G   +
Sbjct: 273 CRLGLSYM 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 61.8 bits (150), Expect = 8e-12
 Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 9/120 (7%)

Query: 15  DEGFGAIVRNCRKLTRLAVSG--LLTDRAFGY-IGKYGKLIRTLSVA--FAGDSDMGLKY 69
           +     ++ +C +L  L +S     T++     +    + I  L+++          L  
Sbjct: 157 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST 216

Query: 70  VLEGCPKLQKLEIRDSPF-GDAALRSGLHHYYNMRFLWMSSC-RLTRQGCQEIAQAMPRL 127
           ++  CP L  L++ DS    +   +        ++ L +S C  +  +   E+ + +P L
Sbjct: 217 LVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGE-IPTL 274

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 15  DEGFGAIVRNCRKLTRLAVSGL-LTDRAFGYIGKYGKLIRTLSVAF-AGDSDMGLKYVLE 72
                 I+  C KL  L++ GL L+D     + K   L   L+++  +G S+  L+ +L 
Sbjct: 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL-VRLNLSGCSGFSEFALQTLLS 165

Query: 73  GCPKLQKLEIRDSP-FGDAALRSGLHHYY-NMRFLWMSSCR--LTRQGCQEIAQAMPRL 127
            C +L +L +     F +  ++  + H    +  L +S  R  L +     + +  P L
Sbjct: 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 224

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.3 bits (128), Expect = 7e-09
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 13/119 (10%)

Query: 15  DEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVL 71
                 +VR C  L  L +S   +L +  F    +   L + LS++   D     L   L
Sbjct: 211 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL-QHLSLSRCYDIIPETLLE-L 268

Query: 72  EGCPKLQKLEIRD--SPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV 128
              P L+ L++           L+  L H      L ++    T      I     + +
Sbjct: 269 GEIPTLKTLQVFGIVPDGTLQLLKEALPH------LQINCSHFTTIARPTIGNKKNQEI 321

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 12/108 (11%)

Query: 21  IVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKL 80
             R  R      ++   +             ++ + ++ +      L  +L  C KLQ L
Sbjct: 74  AFRCPRSFMDQPLAEHFSPF----------RVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123

Query: 81  EIRDSPFGDAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRL 127
            +      D  + + L    N+  L +S C   +    Q +  +  RL
Sbjct: 124 SLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 15/124 (12%)

Query: 15  DEGFGAI---VRNCRKLTRLAVSG-LLTDRAFGYIGKYGK----LIRTLSVAFAGDSDMG 66
             G G +   +R    L  L +S  LL D     + +        +  L + +   S   
Sbjct: 99  GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158

Query: 67  LKY---VLEGCPKLQKLEIRDSPFGDA---ALRSGL-HHYYNMRFLWMSSCRLTRQGCQE 119
            +    VL   P  ++L + ++   +A    L  GL      +  L + SC +T   C++
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 120 IAQA 123
           +   
Sbjct: 219 LCGI 222

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 15/127 (11%)

Query: 15  DEGFGAI---VRNCRKLTRLAVSG-LLTDRAFGYIG----KYGKLIRTLSVAFAGDSDMG 66
            +G G +   +R    L  L+++G  L D     +     + G  + +L V     +   
Sbjct: 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329

Query: 67  LKY---VLEGCPKLQKLEIRDSPFGDA---ALRSGL-HHYYNMRFLWMSSCRLTRQGCQE 119
             +   VL     L +L+I ++   DA    L  GL      +R LW++ C ++   C  
Sbjct: 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389

Query: 120 IAQAMPR 126
           +A  +  
Sbjct: 390 LAATLLA 396

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 28  LTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKY---VLEGCPKLQKLEIR 83
           +  L +    L+D  +  +    +  + + +   G ++   K     L   P L +L +R
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 84  DSPFGDA---ALRSGLHHYY-NMRFLWMSSCRLTRQGCQEIAQAM 124
            +  GD     +  GL      ++ L + +C LT  GC  ++  +
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 109

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 20/124 (16%), Positives = 44/124 (35%), Gaps = 15/124 (12%)

Query: 15  DEGFGAI---VRNCRKLTRLAVSG-LLTDRAFGYIGKYGK----LIRTLSVAFAGDSDMG 66
                 +   +R       L VS   + +     + +  K     +  L +   G +   
Sbjct: 156 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215

Query: 67  LKY---VLEGCPKLQKLEIRDSPFGDAALR----SGLHHYYNMRFLWMSSCRLTRQGCQE 119
            +    ++     L++L +  +  GD  +       LH    +R LW+  C +T +GC +
Sbjct: 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD 275

Query: 120 IAQA 123
           + + 
Sbjct: 276 LCRV 279

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 19/132 (14%)

Query: 15  DEGFGAIV---RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVA-----FAGDSDM 65
            E   ++         +  + +SG  +   A  ++ +     + L +A     F G    
Sbjct: 18  TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKD 77

Query: 66  ----GLKYVLEG---CPKLQKLEIRDSPFGDA---ALRSGLHHYYNMRFLWMSSCRLTRQ 115
                L+ +L+    CPKL  + + D+ FG      L   L  +  +  L++ +  L  Q
Sbjct: 78  EIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137

Query: 116 GCQEIAQAMPRL 127
              +IA+A+  L
Sbjct: 138 AGAKIARALQEL 149

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 67  LKYVLEGCPKLQKLEIRDSPFGDA---ALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQA 123
           L   L  C +L+ L+++D+ F      AL   L  + N+R L ++ C L+ +G   +  A
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 23/134 (17%)

Query: 15  DEGFGAIV---RNCRKLTRL-------------AVSGLLTDRAFGYIGKYGKLIRTLSVA 58
                 ++        L  L              ++  L + A     K    +R++   
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167

Query: 59  FAGDSDMGLKY---VLEGCPKLQKLEIRDSPFGDA----ALRSGLHHYYNMRFLWMSSCR 111
                +  +K      +    L  +++  +          L  GL +   ++ L +    
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 112 LTRQGCQEIAQAMP 125
            T  G   +A A+ 
Sbjct: 228 FTHLGSSALAIALK 241

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 13/126 (10%), Positives = 38/126 (30%), Gaps = 16/126 (12%)

Query: 15  DEG---FGAIVRNCRKLTRLAVSG-LLTD----RAFGYIGKYGKLIRTLSVAFAGDSDMG 66
           +     +    ++ R L  + +    +              Y + ++ L +     + +G
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232

Query: 67  LKY---VLEGCPKLQKLEIRDSPFGDA---ALRSGLHHYYN--MRFLWMSSCRLTRQGCQ 118
                  L+  P L++L + D         A+        N  ++ L +    +     +
Sbjct: 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292

Query: 119 EIAQAM 124
            +   +
Sbjct: 293 TLKTVI 298

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 11/120 (9%)

Query: 15  DEGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGK----YGKLIRTLSVAFAGDSDMGLKY 69
             G   ++    +  +L +    L   A   +          I TL ++    +  G+  
Sbjct: 115 PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAV 174

Query: 70  ---VLEGCPKLQKLEIRDSPFGDA---ALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQA 123
               L G   +  L +  +  GD     L + L     ++ L ++           +A+A
Sbjct: 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 63  SDMGLKYVLEGCPKLQKLEIRDSPFGDA---ALRSGLHHYY-NMRFLWMSSCRLTRQGCQ 118
              GL+ +L    + +KL ++ +  G      LR  L H    +  L +S+  LT  G  
Sbjct: 114 DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA 173

Query: 119 EIAQA 123
            + + 
Sbjct: 174 VLMEG 178

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 9e-06
 Identities = 13/75 (17%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 74  CPKLQKLEIRDSPFGDA---ALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVE 130
            P+L+ ++I      D     L   +    +++F+ M    L+ +  +E+ +++P + ++
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLP-MKID 336

Query: 131 VIRSDDEEETDNYVE 145
           V  S + ++  +Y  
Sbjct: 337 VSDSQEYDDDYSYPM 351

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 13/117 (11%)

Query: 20  AIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKL----IRTLSVAFAGDSDMGLKY---VL 71
            +      +T L +     + ++     +        I +L++               +L
Sbjct: 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162

Query: 72  EGCP-KLQKLEIRDSPFGDA---ALRSGLHHYY-NMRFLWMSSCRLTRQGCQEIAQA 123
              P  +  L +R +         L   L     ++  L +S+  L  +   E+A  
Sbjct: 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 13/117 (11%)

Query: 20  AIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKL----IRTLSVAFAGDSDMGLKY---VL 71
            +      +T L +SG  L+ ++   + K        I  L + +   S           
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 72  EGCPK-LQKLEIRDSPFGDA---ALRSGL-HHYYNMRFLWMSSCRLTRQGCQEIAQA 123
              P  +  L +R +  G      L   L     N+  L +    L  + C E+A+ 
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF 190

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 7/85 (8%)

Query: 8   HATGEPMDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGD--- 62
            AT   +       +   + + ++ +     + D     + +   L +++          
Sbjct: 67  DATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN 126

Query: 63  -SDMGLKYVLEGCPKLQKLEIRDSP 86
            +D G+   L     L+ L + D P
Sbjct: 127 VTDKGIIA-LHHFRNLKYLFLSDLP 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.92
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.55
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.5
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.45
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.42
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.29
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.28
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.26
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.26
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.19
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.97
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.7
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.5
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.36
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.34
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.32
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.02
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.02
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.95
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.9
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.89
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.87
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.86
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.86
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.85
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.79
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.76
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.74
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.73
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.72
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.72
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.7
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.69
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.65
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.65
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.63
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.63
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.63
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.62
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.61
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.61
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.61
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.59
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.59
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.59
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.59
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.58
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.58
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.56
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.54
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.54
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.52
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.49
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.49
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.49
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.44
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.42
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.4
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.36
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.35
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.35
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.3
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.23
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.23
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.22
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.2
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.16
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.16
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.03
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.01
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.94
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.92
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.91
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.66
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	96.64
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	96.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.53
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.52
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.46
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	96.12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.02
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	95.91
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	95.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	95.61
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	94.76
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.71
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	92.01
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	88.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	87.0
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	82.77
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	81.34

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=3.4e-25  Score=201.45  Aligned_cols=172  Identities=49%  Similarity=0.828  Sum_probs=151.7

Q ss_pred             CCCCCCCCCCcHHHHHHHHhhCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEec
Q 035790            4 HRPDHATGEPMDEGFGAIVRNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIR   83 (198)
Q Consensus         4 ~~~~~~t~~~~D~g~~ai~~~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~   83 (198)
                      +....+|+.+.|+|+.+++++|++|++|++++.++|.++..++..+++|++|+|++|..+|.|+..++.+|++|++|+|+
T Consensus       410 ~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~  489 (594)
T 2p1m_B          410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR  489 (594)
T ss_dssp             TCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred             CCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence            34678899999999999999999999999988889999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCCCC---chhHhHHHHHhHhhhccCCCCCC
Q 035790           84 DSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDDE---EETDNYVETLYMYRSLEGPRHDA  160 (198)
Q Consensus        84 ~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~~~---~~~~~~~~~~~~y~sl~g~r~d~  160 (198)
                      +|+++|.++..++.++++|++|++++|+++++|++.+++.+|+|+++++.+.+.   .+..+.+++++.|++++|||.|+
T Consensus       490 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  569 (594)
T 2p1m_B          490 DCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVAGPRFDM  569 (594)
T ss_dssp             SCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSCTTSBCSEEEEEECSSCSCSCC
T ss_pred             CCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccccccccchhhhhhhhhccCCCCCCC
Confidence            999999999988889999999999999999999999999999999999987632   22445678999999999999999


Q ss_pred             CCcceeecccCCccc
Q 035790          161 PKFVTILRIIKPKLM  175 (198)
Q Consensus       161 p~~v~~l~~~~~~~~  175 (198)
                      |++|.+++|..+...
T Consensus       570 p~~~~~l~~~~~~~~  584 (594)
T 2p1m_B          570 PGFVWNMDQDSTMRF  584 (594)
T ss_dssp             CTTEEEC--------
T ss_pred             CCceEeccCCCCCcc
Confidence            999999998876543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.92  E-value=1e-25  Score=205.09  Aligned_cols=164  Identities=33%  Similarity=0.588  Sum_probs=148.9

Q ss_pred             CCCCCCCCcHHHHHHHHhhCCCCceeEe---cCCCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEe
Q 035790            6 PDHATGEPMDEGFGAIVRNCRKLTRLAV---SGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEI   82 (198)
Q Consensus         6 ~~~~t~~~~D~g~~ai~~~c~~L~~L~L---~g~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L   82 (198)
                      ..++|+.|.|+|+.+++.+|++|++|++   .+.++|.++.+++.++++|++|+|++|..+|.|+..++.+|++|++|+|
T Consensus       416 ~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l  495 (592)
T 3ogk_B          416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM  495 (592)
T ss_dssp             CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEE
T ss_pred             CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeec
Confidence            5689999999999999999999999999   5557999999999999999999999999999999999999999999999


Q ss_pred             cCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCCC--------CchhHhHHHHHhHhhhcc
Q 035790           83 RDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDD--------EEETDNYVETLYMYRSLE  154 (198)
Q Consensus        83 ~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~~--------~~~~~~~~~~~~~y~sl~  154 (198)
                      ++|+|+|.++..++.++++|++|+|++|++|+.|++.+++.+|.|+++++...+        .+.+...++++|.|++++
T Consensus       496 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  575 (592)
T 3ogk_B          496 RGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLA  575 (592)
T ss_dssp             ESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC---------------CCCEEEEEECTT
T ss_pred             cCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCccccccccccCCcCCcchhheEeeeecC
Confidence            999999999999999999999999999999999999999999999999998641        133334578999999999


Q ss_pred             CCCCCCCCcceeecc
Q 035790          155 GPRHDAPKFVTILRI  169 (198)
Q Consensus       155 g~r~d~p~~v~~l~~  169 (198)
                      |||.|+|++|++|+|
T Consensus       576 g~~~~~p~~~~~l~~  590 (592)
T 3ogk_B          576 GQRTDCPTTVRVLKE  590 (592)
T ss_dssp             CSCSCCCTTCEECCS
T ss_pred             CCccCCCCCeEecCC
Confidence            999999999999975

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.73  E-value=5.4e-18  Score=136.35  Aligned_cols=105  Identities=13%  Similarity=0.225  Sum_probs=93.6

Q ss_pred             CCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhc---CCCCceEEecCC-CCChHHHHHHHhc
Q 035790           25 CRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEG---CPKLQKLEIRDS-PFGDAALRSGLHH   98 (198)
Q Consensus        25 c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~---C~~L~~L~L~~c-~~tD~~l~~i~~~   98 (198)
                      ..+|++|++++ .|||+++.+|. .|++|+.|+|++|.. ||.|+.+|+..   |++|++|+|++| .|||.|+..++ +
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~  137 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H  137 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred             CceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence            35799999965 47999999996 799999999999987 99999999974   789999999999 69999999875 7


Q ss_pred             CCCCcEEEeecee-cCHHH--HHHHHHhCCCCcEEE
Q 035790           99 YYNMRFLWMSSCR-LTRQG--CQEIAQAMPRLVVEV  131 (198)
Q Consensus        99 ~~~L~~L~L~~c~-iTd~g--l~~La~~~p~L~~~~  131 (198)
                      |++|++|+|++|. |||.|  +..+.+..|+++++.
T Consensus       138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~  173 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKL  173 (176)
T ss_dssp             CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred             CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEEe
Confidence            9999999999998 99987  567888999998764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.60  E-value=1.6e-14  Score=122.51  Aligned_cols=171  Identities=19%  Similarity=0.229  Sum_probs=133.0

Q ss_pred             CcHHHHHHHHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccC-CChHHHHHHHhcCCCCceEEecCC-CCCh
Q 035790           13 PMDEGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAG-DSDMGLKYVLEGCPKLQKLEIRDS-PFGD   89 (198)
Q Consensus        13 ~~D~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~-~tD~gl~~i~~~C~~L~~L~L~~c-~~tD   89 (198)
                      +++.++..++..|++|++|++++ .+++.....++. +++|++|++++|. .++.++..+..+|++|++|++++| .+++
T Consensus       105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~  183 (336)
T 2ast_B          105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE  183 (336)
T ss_dssp             ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred             cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence            45677888999999999999965 469999999985 9999999999995 499999998889999999999999 8999


Q ss_pred             HHHHHHHhcCC-CCcEEEeece--ecCHHHHHHHHHhCCCCcEEEecCCC-C-chhHhHHHHHhHhhh--ccCCCCCCCC
Q 035790           90 AALRSGLHHYY-NMRFLWMSSC--RLTRQGCQEIAQAMPRLVVEVIRSDD-E-EETDNYVETLYMYRS--LEGPRHDAPK  162 (198)
Q Consensus        90 ~~l~~i~~~~~-~L~~L~L~~c--~iTd~gl~~La~~~p~L~~~~i~~~~-~-~~~~~~~~~~~~y~s--l~g~r~d~p~  162 (198)
                      .++..+..+++ +|++|++++|  .+++.++..+...+|+|+...+..+. . ......+.++...+.  +++-....|.
T Consensus       184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~  263 (336)
T 2ast_B          184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  263 (336)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence            99888889999 9999999999  59999999998899999998888763 1 122223334433333  3444444455


Q ss_pred             cceeecccCCcccccccccCCCh
Q 035790          163 FVTILRIIKPKLMLVQIKFAEPS  185 (198)
Q Consensus       163 ~v~~l~~~~~~~~~l~~~~~~~~  185 (198)
                      .+..+ ..+.+|..|+++..-|.
T Consensus       264 ~~~~l-~~~~~L~~L~l~~~i~~  285 (336)
T 2ast_B          264 TLLEL-GEIPTLKTLQVFGIVPD  285 (336)
T ss_dssp             GGGGG-GGCTTCCEEECTTSSCT
T ss_pred             HHHHH-hcCCCCCEEeccCccCH
Confidence            44334 23778888888766443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.55  E-value=8.5e-14  Score=126.41  Aligned_cols=125  Identities=22%  Similarity=0.350  Sum_probs=102.9

Q ss_pred             CCCcHHHHHHHHhhCCCCceeEe-cCCCCHHHHHHHHhcCCCCcEEEeec---cCC-Ch----HHHHHHHhcCCCCceEE
Q 035790           11 GEPMDEGFGAIVRNCRKLTRLAV-SGLLTDRAFGYIGKYGKLIRTLSVAF---AGD-SD----MGLKYVLEGCPKLQKLE   81 (198)
Q Consensus        11 ~~~~D~g~~ai~~~c~~L~~L~L-~g~lTD~~L~~I~~~~~~L~~L~L~~---c~~-tD----~gl~~i~~~C~~L~~L~   81 (198)
                      ..+++.|+.+++.+|++|++|.+ ...+++.++..|+..+++|+.|++..   |.. ++    +|+..+..+|++|++|+
T Consensus       363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~  442 (592)
T 3ogk_B          363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA  442 (592)
T ss_dssp             CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence            46889999999999999999999 33569999999998899999999974   333 43    68888888888888888


Q ss_pred             ecCCC--CChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790           82 IRDSP--FGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        82 L~~c~--~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +++|.  ++|.++..++..+++|++|+|++|.+++.++..++..+++|+...+..+
T Consensus       443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred             EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence            88773  8888888888888888888888888888888888888888888777766

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.53  E-value=7.6e-14  Score=126.56  Aligned_cols=124  Identities=16%  Similarity=0.197  Sum_probs=83.7

Q ss_pred             CCCcHHHHHHHHhhCCCCceeEec-CCCCHHHHHHHHhcCCCCcEEEee-----ccCC-C----hHHHHHHHhcCCCCce
Q 035790           11 GEPMDEGFGAIVRNCRKLTRLAVS-GLLTDRAFGYIGKYGKLIRTLSVA-----FAGD-S----DMGLKYVLEGCPKLQK   79 (198)
Q Consensus        11 ~~~~D~g~~ai~~~c~~L~~L~L~-g~lTD~~L~~I~~~~~~L~~L~L~-----~c~~-t----D~gl~~i~~~C~~L~~   79 (198)
                      ..+++.++.+++.+|++|++|.+. ..+++.++..++..+++|+.|+++     +|.. +    |.|+..+..+|++|++
T Consensus       357 ~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~  436 (594)
T 2p1m_B          357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR  436 (594)
T ss_dssp             SCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCE
T ss_pred             CCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccE
Confidence            356778888888778888888662 345788888787777888888887     3444 5    6777777666777666


Q ss_pred             EEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790           80 LEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        80 L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |++++ .++|.++..++..+++|++|+|++|.+++.|+..++..+|+|+...+..+
T Consensus       437 L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n  491 (594)
T 2p1m_B          437 LSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC  491 (594)
T ss_dssp             EECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred             EeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC
Confidence            66655 56666666665556666666666666666666666656666665555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.50  E-value=2.8e-14  Score=114.61  Aligned_cols=85  Identities=15%  Similarity=0.155  Sum_probs=77.3

Q ss_pred             CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCC-CCChHHHHHHHhc---CCCCcEEEeecee-cCHHHHHHHHHh
Q 035790           49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS-PFGDAALRSGLHH---YYNMRFLWMSSCR-LTRQGCQEIAQA  123 (198)
Q Consensus        49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c-~~tD~~l~~i~~~---~~~L~~L~L~~c~-iTd~gl~~La~~  123 (198)
                      ..+|++|++++|..+|.|+.++ .+|++|++|+|++| .|||.|+..++..   +++|++|+|++|. |||+|+..|+ .
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~  137 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H  137 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred             CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence            3479999999999999999998 58999999999999 6999999998763   6799999999998 9999999998 6


Q ss_pred             CCCCcEEEecCC
Q 035790          124 MPRLVVEVIRSD  135 (198)
Q Consensus       124 ~p~L~~~~i~~~  135 (198)
                      +|+|+...+..+
T Consensus       138 ~~~L~~L~L~~c  149 (176)
T 3e4g_A          138 FRNLKYLFLSDL  149 (176)
T ss_dssp             CTTCCEEEEESC
T ss_pred             CCCCCEEECCCC
Confidence            999998888876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.45  E-value=1e-12  Score=111.31  Aligned_cols=157  Identities=13%  Similarity=0.070  Sum_probs=121.1

Q ss_pred             hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCC-CCChHHHHHHHhcCCC
Q 035790           24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS-PFGDAALRSGLHHYYN  101 (198)
Q Consensus        24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c-~~tD~~l~~i~~~~~~  101 (198)
                      .+++|++|++++ .+++.++..+...+++|++|++.+|..++.....++. |++|++|++++| .+++.++..+..++++
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~  169 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSR  169 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence            468999999965 4588888888889999999999999889988888765 999999999999 7999999998899999


Q ss_pred             CcEEEeece-ecCHHHHHHHHHhCC-CCcEEEecCCC--Cchh--HhHHHHHhHhhh--ccCCCCCCCCcceeecccCCc
Q 035790          102 MRFLWMSSC-RLTRQGCQEIAQAMP-RLVVEVIRSDD--EEET--DNYVETLYMYRS--LEGPRHDAPKFVTILRIIKPK  173 (198)
Q Consensus       102 L~~L~L~~c-~iTd~gl~~La~~~p-~L~~~~i~~~~--~~~~--~~~~~~~~~y~s--l~g~r~d~p~~v~~l~~~~~~  173 (198)
                      |++|++++| .+++.++..+...+| +|+...+..+.  ..+.  ...+.++...+.  +++-+......+..+ ..+.+
T Consensus       170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~  248 (336)
T 2ast_B          170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNY  248 (336)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTT
T ss_pred             CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCC
Confidence            999999999 699999999889999 99999888762  1111  112344434444  344432111222223 34589


Q ss_pred             ccccccccC
Q 035790          174 LMLVQIKFA  182 (198)
Q Consensus       174 ~~~l~~~~~  182 (198)
                      |+.|++++.
T Consensus       249 L~~L~l~~~  257 (336)
T 2ast_B          249 LQHLSLSRC  257 (336)
T ss_dssp             CCEEECTTC
T ss_pred             CCEeeCCCC
Confidence            999999986

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.42  E-value=7.5e-12  Score=99.61  Aligned_cols=122  Identities=13%  Similarity=0.069  Sum_probs=103.3

Q ss_pred             cHHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHh---cCCCCcEEEeeccCCChHHHHHHHh---cCCCCceEEecCC
Q 035790           14 MDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGK---YGKLIRTLSVAFAGDSDMGLKYVLE---GCPKLQKLEIRDS   85 (198)
Q Consensus        14 ~D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~---~~~~L~~L~L~~c~~tD~gl~~i~~---~C~~L~~L~L~~c   85 (198)
                      .++.+..++..+++|++|+|++  .++|+++..|++   .+++|++|+|++|..+|+|+..+++   .++.|++|+|++|
T Consensus        24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            4577888889999999999954  579999988876   4689999999999999999887764   4689999999999


Q ss_pred             CCChHHHHHHH---hcCCCCcEEEe--eceecCHHHHHHHHHh---CCCCcEEEecCC
Q 035790           86 PFGDAALRSGL---HHYYNMRFLWM--SSCRLTRQGCQEIAQA---MPRLVVEVIRSD  135 (198)
Q Consensus        86 ~~tD~~l~~i~---~~~~~L~~L~L--~~c~iTd~gl~~La~~---~p~L~~~~i~~~  135 (198)
                      .|+|+|+..++   .+.++|++|+|  ++|.++++|...++..   .+.|+...+..+
T Consensus       104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            99999987775   56779999999  8889999998877754   578888887765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.37  E-value=4e-12  Score=111.83  Aligned_cols=124  Identities=14%  Similarity=0.126  Sum_probs=91.3

Q ss_pred             CCcHHHHHHHHhhCCCCceeEecC-CCCHHHHHHHHh----cCCCCcEEEeeccCCChHHHHHHH---hcCCCCceEEec
Q 035790           12 EPMDEGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGK----YGKLIRTLSVAFAGDSDMGLKYVL---EGCPKLQKLEIR   83 (198)
Q Consensus        12 ~~~D~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~----~~~~L~~L~L~~c~~tD~gl~~i~---~~C~~L~~L~L~   83 (198)
                      .++++|+..++..+++|++|+|++ .++|.++..++.    .+++|++|+|++|..++.|+..++   ..+++|++|+|+
T Consensus       112 ~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls  191 (372)
T 3un9_A          112 QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL  191 (372)
T ss_dssp             CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECT
T ss_pred             CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCC
Confidence            456777777777777888888854 457877777764    357788888888877777776664   457788888888


Q ss_pred             CCCCChHHHHHHH---hcCCCCcEEEeeceecCHHHHHHHHH---hCCCCcEEEecCC
Q 035790           84 DSPFGDAALRSGL---HHYYNMRFLWMSSCRLTRQGCQEIAQ---AMPRLVVEVIRSD  135 (198)
Q Consensus        84 ~c~~tD~~l~~i~---~~~~~L~~L~L~~c~iTd~gl~~La~---~~p~L~~~~i~~~  135 (198)
                      +|.|+|.|+..++   .++++|++|+|++|.+++.|+..++.   .+|.|+...+..+
T Consensus       192 ~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            8888887765543   45678888888888888888777765   3577877777765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=1.2e-11  Score=108.79  Aligned_cols=123  Identities=11%  Similarity=0.055  Sum_probs=85.0

Q ss_pred             CcHHHHHHHHhh----CCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHh----cCCCCceEEec
Q 035790           13 PMDEGFGAIVRN----CRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLE----GCPKLQKLEIR   83 (198)
Q Consensus        13 ~~D~g~~ai~~~----c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~----~C~~L~~L~L~   83 (198)
                      +++.+...++..    +++|++|+|++ .+++.++..++..+++|+.|+|++|..+|.|+..++.    .+++|++|+|+
T Consensus        84 l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls  163 (372)
T 3un9_A           84 MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLS  163 (372)
T ss_dssp             CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECC
T ss_pred             CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCC
Confidence            455555554433    35788888854 4577777777777777888888887777777776653    35678888888


Q ss_pred             CCCCChHHHHHHH---hcCCCCcEEEeeceecCHHHHHHHHHh---CCCCcEEEecCC
Q 035790           84 DSPFGDAALRSGL---HHYYNMRFLWMSSCRLTRQGCQEIAQA---MPRLVVEVIRSD  135 (198)
Q Consensus        84 ~c~~tD~~l~~i~---~~~~~L~~L~L~~c~iTd~gl~~La~~---~p~L~~~~i~~~  135 (198)
                      +|.+++.++..++   ..+++|++|+|++|.+++.|+..|+..   .+.|+...+..+
T Consensus       164 ~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N  221 (372)
T 3un9_A          164 NNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN  221 (372)
T ss_dssp             SSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred             CCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence            8888777766553   567778888888888888777766643   456766666665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.29  E-value=5e-11  Score=94.83  Aligned_cols=105  Identities=13%  Similarity=0.094  Sum_probs=89.6

Q ss_pred             CCcHHHHHHHHh---hCCCCceeEecC-CCCHHHHHHHHhc---CCCCcEEEeeccCCChHHHHHHHhc---CCCCceEE
Q 035790           12 EPMDEGFGAIVR---NCRKLTRLAVSG-LLTDRAFGYIGKY---GKLIRTLSVAFAGDSDMGLKYVLEG---CPKLQKLE   81 (198)
Q Consensus        12 ~~~D~g~~ai~~---~c~~L~~L~L~g-~lTD~~L~~I~~~---~~~L~~L~L~~c~~tD~gl~~i~~~---C~~L~~L~   81 (198)
                      .+.|+|+..++.   .+++|++|+|++ .++|++..+|++.   .++|++|+|++|..+|.|+.++++.   ++.|++|+
T Consensus        48 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~  127 (185)
T 1io0_A           48 NIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELR  127 (185)
T ss_dssp             TCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEE
T ss_pred             CCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEE
Confidence            678999887765   478999999965 5699998888764   5799999999999999999888754   67899999


Q ss_pred             e--cCCCCChHHHHHH---HhcCCCCcEEEeeceecCHHH
Q 035790           82 I--RDSPFGDAALRSG---LHHYYNMRFLWMSSCRLTRQG  116 (198)
Q Consensus        82 L--~~c~~tD~~l~~i---~~~~~~L~~L~L~~c~iTd~g  116 (198)
                      |  ++|.|+|+|...+   ....++|++|+|++|.+++.|
T Consensus       128 L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          128 IDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             ecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence            9  8889999996655   456789999999999999887

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.28  E-value=1.7e-11  Score=107.98  Aligned_cols=124  Identities=19%  Similarity=0.191  Sum_probs=103.8

Q ss_pred             CCcHHHHHHHHhhCCCCceeEecC-CCCHHHHHHHHh---cCCCCcEEEeeccCCChHHHHHHHhcCC----CCceEEec
Q 035790           12 EPMDEGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGK---YGKLIRTLSVAFAGDSDMGLKYVLEGCP----KLQKLEIR   83 (198)
Q Consensus        12 ~~~D~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~---~~~~L~~L~L~~c~~tD~gl~~i~~~C~----~L~~L~L~   83 (198)
                      ++++.++..++..+++|++|++++ .+++.++..|+.   .+++|++|+|+++..++.++..+++.++    +|++|+++
T Consensus        14 ~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~   93 (461)
T 1z7x_W           14 ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ   93 (461)
T ss_dssp             CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECT
T ss_pred             ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEcc
Confidence            467888999889999999999954 458876655543   5799999999999889999999998888    79999999


Q ss_pred             CCCCChHHHHHH---HhcCCCCcEEEeeceecCHHHHHHHHHh----CCCCcEEEecCC
Q 035790           84 DSPFGDAALRSG---LHHYYNMRFLWMSSCRLTRQGCQEIAQA----MPRLVVEVIRSD  135 (198)
Q Consensus        84 ~c~~tD~~l~~i---~~~~~~L~~L~L~~c~iTd~gl~~La~~----~p~L~~~~i~~~  135 (198)
                      +|.+++.++..+   ..++++|++|++++|.+++.+...++..    .+.|+...+..+
T Consensus        94 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  152 (461)
T 1z7x_W           94 NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC  152 (461)
T ss_dssp             TSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             CCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC
Confidence            999998764443   5789999999999999999999988875    346888888766

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.26  E-value=6.1e-11  Score=103.00  Aligned_cols=96  Identities=21%  Similarity=0.350  Sum_probs=42.2

Q ss_pred             CCCceeEecC-CCCHHHHHHHHh---cCCCCcEEEeeccCCChHHHHHHHh----cCCCCceEEecCCCCChHHHHHH--
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGK---YGKLIRTLSVAFAGDSDMGLKYVLE----GCPKLQKLEIRDSPFGDAALRSG--   95 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~---~~~~L~~L~L~~c~~tD~gl~~i~~----~C~~L~~L~L~~c~~tD~~l~~i--   95 (198)
                      ++|++|++++ .+++.++..++.   .+++|++|++++|..++.|+..++.    ++++|+.|+|++|.+++.|...+  
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            4455555532 234444433222   3445555555544444444433333    34445555554444444433322  


Q ss_pred             -HhcCCCCcEEEeeceecCHHHHHHHH
Q 035790           96 -LHHYYNMRFLWMSSCRLTRQGCQEIA  121 (198)
Q Consensus        96 -~~~~~~L~~L~L~~c~iTd~gl~~La  121 (198)
                       ..++++|++|+|++|.+++.|...++
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHH
Confidence             23444444455544444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.26  E-value=7.1e-11  Score=102.59  Aligned_cols=118  Identities=13%  Similarity=0.088  Sum_probs=91.9

Q ss_pred             HHHHHhhCCCCceeEecC-CCCHHHHHHHHhcC------------CCCcEEEeeccCCChHHHHHHH---hcCCCCceEE
Q 035790           18 FGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYG------------KLIRTLSVAFAGDSDMGLKYVL---EGCPKLQKLE   81 (198)
Q Consensus        18 ~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~------------~~L~~L~L~~c~~tD~gl~~i~---~~C~~L~~L~   81 (198)
                      +...+..+++|++|+|++ .+++.+...++...            ++|++|++++|..++.++..++   ..+++|++|+
T Consensus       114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  193 (386)
T 2ca6_A          114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK  193 (386)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE
Confidence            333456789999999955 45777777666533            8999999999888877777544   3789999999


Q ss_pred             ecCCCCChHHHHHHH----hcCCCCcEEEeeceecCHHHHHHHH---HhCCCCcEEEecCC
Q 035790           82 IRDSPFGDAALRSGL----HHYYNMRFLWMSSCRLTRQGCQEIA---QAMPRLVVEVIRSD  135 (198)
Q Consensus        82 L~~c~~tD~~l~~i~----~~~~~L~~L~L~~c~iTd~gl~~La---~~~p~L~~~~i~~~  135 (198)
                      +++|.+++.++..++    .++++|++|+|++|.+++.|...+.   ..+|.|+...+..+
T Consensus       194 L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n  254 (386)
T 2ca6_A          194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  254 (386)
T ss_dssp             CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             CcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence            999999998866654    4888999999999999988877776   45688888888766

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.19  E-value=9.9e-11  Score=103.01  Aligned_cols=114  Identities=17%  Similarity=0.298  Sum_probs=75.1

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHh----cCCCCcEEEeeccCCChHHHHHHH---hcCCCCceEEecCCCCChHHHH
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGK----YGKLIRTLSVAFAGDSDMGLKYVL---EGCPKLQKLEIRDSPFGDAALR   93 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~----~~~~L~~L~L~~c~~tD~gl~~i~---~~C~~L~~L~L~~c~~tD~~l~   93 (198)
                      +..+++|++|++++ .+++.++..+++    ..++|++|++++|..++.++..+.   ..+++|++|++++|.+++.++.
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            34567777777744 346666666654    244777777777766665543333   3577777777777777777765


Q ss_pred             HHHh----cCCCCcEEEeeceecCHHHHHHHHH---hCCCCcEEEecCC
Q 035790           94 SGLH----HYYNMRFLWMSSCRLTRQGCQEIAQ---AMPRLVVEVIRSD  135 (198)
Q Consensus        94 ~i~~----~~~~L~~L~L~~c~iTd~gl~~La~---~~p~L~~~~i~~~  135 (198)
                      .++.    .+++|++|++++|.+++.|+..+..   .++.|+...+..+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence            5543    4677777888777777777655554   3677777776655

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.07  E-value=1.3e-09  Score=88.84  Aligned_cols=121  Identities=15%  Similarity=0.104  Sum_probs=98.0

Q ss_pred             cHHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHhc---CCCCcEEEeeccCCChHHHHHHHh---cCCCCceEEecCC
Q 035790           14 MDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKY---GKLIRTLSVAFAGDSDMGLKYVLE---GCPKLQKLEIRDS   85 (198)
Q Consensus        14 ~D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~~---~~~L~~L~L~~c~~tD~gl~~i~~---~C~~L~~L~L~~c   85 (198)
                      .++.+..+....+.|++|+|+.  .++|++...|++.   ...|++|+|++|..+|.|..+|++   .-+.|++|+|++|
T Consensus        29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N  108 (197)
T 1pgv_A           29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN  108 (197)
T ss_dssp             HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence            4477888888899999999964  6799998888764   569999999999999999888774   4578999999999


Q ss_pred             CCChHHHHHHHh---cCCCCcEEEeece---ecCHHHHHHHHHh---CCCCcEEEecC
Q 035790           86 PFGDAALRSGLH---HYYNMRFLWMSSC---RLTRQGCQEIAQA---MPRLVVEVIRS  134 (198)
Q Consensus        86 ~~tD~~l~~i~~---~~~~L~~L~L~~c---~iTd~gl~~La~~---~p~L~~~~i~~  134 (198)
                      .|+|+|...++.   .-+.|++|+|+++   .+.++|..+|+..   -+.|....+..
T Consensus       109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence            999999888764   4467999999865   5799987777654   46676555543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.05  E-value=4.9e-10  Score=98.57  Aligned_cols=112  Identities=17%  Similarity=0.193  Sum_probs=67.6

Q ss_pred             CcHHHHHHHHh-hCCCCceeEecC----CCCHHHHHHHH-----hcCCCCcEEEeeccCCChHHHHHHHh--cCCCCceE
Q 035790           13 PMDEGFGAIVR-NCRKLTRLAVSG----LLTDRAFGYIG-----KYGKLIRTLSVAFAGDSDMGLKYVLE--GCPKLQKL   80 (198)
Q Consensus        13 ~~D~g~~ai~~-~c~~L~~L~L~g----~lTD~~L~~I~-----~~~~~L~~L~L~~c~~tD~gl~~i~~--~C~~L~~L   80 (198)
                      ++++++..++. .+|+|++|.|+.    ...|.++..|+     ..+|+|+.|+|..|..+|.+...++.  .+++|++|
T Consensus       205 l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~L  284 (362)
T 2ra8_A          205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM  284 (362)
T ss_dssp             CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEE
T ss_pred             CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEE
Confidence            45666666654 467777776621    11222121111     23567777777776666666555554  35677777


Q ss_pred             EecCCCCChHHHHHHH---hcCCCCcEEEeeceecCHHHHHHHHHhC
Q 035790           81 EIRDSPFGDAALRSGL---HHYYNMRFLWMSSCRLTRQGCQEIAQAM  124 (198)
Q Consensus        81 ~L~~c~~tD~~l~~i~---~~~~~L~~L~L~~c~iTd~gl~~La~~~  124 (198)
                      +|+.|.++|.|...++   .++++|++|+|+.|.++++++++|++.+
T Consensus       285 dLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al  331 (362)
T 2ra8_A          285 DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL  331 (362)
T ss_dssp             ECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred             ECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence            7776677777665554   3466777777777777777777777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.97  E-value=5.5e-10  Score=96.52  Aligned_cols=113  Identities=15%  Similarity=0.085  Sum_probs=52.9

Q ss_pred             hhCC-CCceeEecC-CCCHHHHHHHHhc----CCCCcEEEeeccCCChHHHHHH---HhcC-CCCceEEecCCCCChHHH
Q 035790           23 RNCR-KLTRLAVSG-LLTDRAFGYIGKY----GKLIRTLSVAFAGDSDMGLKYV---LEGC-PKLQKLEIRDSPFGDAAL   92 (198)
Q Consensus        23 ~~c~-~L~~L~L~g-~lTD~~L~~I~~~----~~~L~~L~L~~c~~tD~gl~~i---~~~C-~~L~~L~L~~c~~tD~~l   92 (198)
                      ..++ +|++|+|++ .+++.+...++..    +++|++|+|++|..++.+...+   ...+ ++|++|++++|.+++.+.
T Consensus        47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A           47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence            3455 566666643 2344333333321    2566666666655433332222   2233 556666666655554443


Q ss_pred             HHHH---hc-CCCCcEEEeeceecCHHHHHHHHHh---CC-CCcEEEecCC
Q 035790           93 RSGL---HH-YYNMRFLWMSSCRLTRQGCQEIAQA---MP-RLVVEVIRSD  135 (198)
Q Consensus        93 ~~i~---~~-~~~L~~L~L~~c~iTd~gl~~La~~---~p-~L~~~~i~~~  135 (198)
                      ..++   .. +++|++|+|++|.+++.|...++..   .+ .|+...+..+
T Consensus       127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A          127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence            3322   22 3456666666655555444444322   22 5555554443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.90  E-value=4.8e-09  Score=92.20  Aligned_cols=119  Identities=16%  Similarity=0.154  Sum_probs=82.5

Q ss_pred             HHHHHHhhCCCCceeEecC----------------------CCCHHHHHHHHh-cCCCCcEEEeeccC---CChHHH---
Q 035790           17 GFGAIVRNCRKLTRLAVSG----------------------LLTDRAFGYIGK-YGKLIRTLSVAFAG---DSDMGL---   67 (198)
Q Consensus        17 g~~ai~~~c~~L~~L~L~g----------------------~lTD~~L~~I~~-~~~~L~~L~L~~c~---~tD~gl---   67 (198)
                      ++..++..+|+|++|.|++                      .++++++..|+. .+|+|+.|+|+.+.   ..+.++   
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            3556666777777776622                      247888888875 57889988886432   123223   


Q ss_pred             HHHH--hcCCCCceEEecCCCCChHHHHHHHh--cCCCCcEEEeeceecCHHHHHHHHH---hCCCCcEEEecCC
Q 035790           68 KYVL--EGCPKLQKLEIRDSPFGDAALRSGLH--HYYNMRFLWMSSCRLTRQGCQEIAQ---AMPRLVVEVIRSD  135 (198)
Q Consensus        68 ~~i~--~~C~~L~~L~L~~c~~tD~~l~~i~~--~~~~L~~L~L~~c~iTd~gl~~La~---~~p~L~~~~i~~~  135 (198)
                      ..+.  ..+|+|+.|++++|.++|.+...++.  .+++|++|+|+.|.+++.|.+.++.   .+|+|+...+..+
T Consensus       243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            2222  34788999999888888877665553  5788999999888899998888874   3688887777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.73  E-value=3.9e-08  Score=84.82  Aligned_cols=102  Identities=10%  Similarity=0.123  Sum_probs=66.3

Q ss_pred             CCceeEecC-CCCHHHHHHHHh---cC-CCCcEEEeeccCCChHHHHHHHh----cCCCCceEEecCCCCChHHH---HH
Q 035790           27 KLTRLAVSG-LLTDRAFGYIGK---YG-KLIRTLSVAFAGDSDMGLKYVLE----GCPKLQKLEIRDSPFGDAAL---RS   94 (198)
Q Consensus        27 ~L~~L~L~g-~lTD~~L~~I~~---~~-~~L~~L~L~~c~~tD~gl~~i~~----~C~~L~~L~L~~c~~tD~~l---~~   94 (198)
                      +|++|+|++ .+++.+...++.   .+ ++|++|+|++|..++.|+..++.    .+++|++|+|++|.+++.+.   ..
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  247 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL  247 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence            777777743 234444333332   34 47788888777766655554432    24678888888887777443   33


Q ss_pred             HHhcCCCCcEEEeecee---cCHHHHHHHHHhCCCCc
Q 035790           95 GLHHYYNMRFLWMSSCR---LTRQGCQEIAQAMPRLV  128 (198)
Q Consensus        95 i~~~~~~L~~L~L~~c~---iTd~gl~~La~~~p~L~  128 (198)
                      +...+++|++|++++|.   ++++++..+....+.+.
T Consensus       248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~  284 (362)
T 3goz_A          248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ  284 (362)
T ss_dssp             TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred             HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence            34667788888888887   78888888887777665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.70  E-value=1.2e-08  Score=76.96  Aligned_cols=83  Identities=19%  Similarity=0.128  Sum_probs=35.2

Q ss_pred             cCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCC
Q 035790           48 YGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRL  127 (198)
Q Consensus        48 ~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L  127 (198)
                      .+++|++|++++|..++.   ....++++|+.|++++|.+++. +.....++++|++|++++|++++-........+|+|
T Consensus        40 ~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L  115 (149)
T 2je0_A           40 EFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL  115 (149)
T ss_dssp             TCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred             hcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence            345555555555444222   1123345555555555544432 122233455555555555554442211112244555


Q ss_pred             cEEEecC
Q 035790          128 VVEVIRS  134 (198)
Q Consensus       128 ~~~~i~~  134 (198)
                      +...+..
T Consensus       116 ~~L~l~~  122 (149)
T 2je0_A          116 KSLDLFN  122 (149)
T ss_dssp             CEEECTT
T ss_pred             CEEeCcC
Confidence            4444443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.67  E-value=7.4e-08  Score=78.35  Aligned_cols=121  Identities=12%  Similarity=0.116  Sum_probs=80.7

Q ss_pred             cHHHHHHHHhhCCCCceeEecCCCC--HHHHHHHHhcCCCCcEEEeecc-CCChHHHHHHHhc---CCCCceEEecCCCC
Q 035790           14 MDEGFGAIVRNCRKLTRLAVSGLLT--DRAFGYIGKYGKLIRTLSVAFA-GDSDMGLKYVLEG---CPKLQKLEIRDSPF   87 (198)
Q Consensus        14 ~D~g~~ai~~~c~~L~~L~L~g~lT--D~~L~~I~~~~~~L~~L~L~~c-~~tD~gl~~i~~~---C~~L~~L~L~~c~~   87 (198)
                      ..+||..+++.-+--.+.+-...-|  ++.+..+-...+.|++|+|+.+ ...|+|+..|++.   -..|++|+|++|.|
T Consensus         3 ~~~~~~~~~k~~~~~~~~~e~~N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i   82 (197)
T 1pgv_A            3 HGTTFNGIMQSYVPRIVPDEPDNDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI   82 (197)
T ss_dssp             ------------------------CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC
T ss_pred             CCccccceecccccccCCCCCCCCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC
Confidence            3456777766433222222222113  5678888888899999999986 5699999888765   46799999999999


Q ss_pred             ChHHHHHHH---hcCCCCcEEEeeceecCHHHHHHHHHhCC---CCcEEEecC
Q 035790           88 GDAALRSGL---HHYYNMRFLWMSSCRLTRQGCQEIAQAMP---RLVVEVIRS  134 (198)
Q Consensus        88 tD~~l~~i~---~~~~~L~~L~L~~c~iTd~gl~~La~~~p---~L~~~~i~~  134 (198)
                      +|.|..+++   ..-+.|++|+|++|.|+++|..+|++.+.   .|....+..
T Consensus        83 gd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           83 SDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             BHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             ChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            999976654   56688999999999999999999998763   566666653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.64  E-value=8.3e-09  Score=81.73  Aligned_cols=106  Identities=16%  Similarity=0.157  Sum_probs=66.6

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      +..+++|++|++++ .+++  +..++ .+++|++|++++|..++.+...+ .++++|+.|++++|.+++.....+ .+++
T Consensus        62 l~~l~~L~~L~l~~n~~~~--~~~l~-~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~  136 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHATN--YNPIS-GLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHSAHDDSILTKI-NTLP  136 (197)
T ss_dssp             GGGCTTCSEEEEESCCCSC--CGGGT-TCTTCCEEEEECTTCBGGGSCCC-TTCTTCCEEECCSSBCBGGGHHHH-TTCS
T ss_pred             HhcCCCCCEEEccCCCCCc--chhhh-cCCCCCEEEeECCccCcccChhh-cCCCCCCEEEecCCccCcHhHHHH-hhCC
Confidence            35677788888844 2222  22344 46777777777776665555444 347777777777777777555443 4677


Q ss_pred             CCcEEEeecee-cCHHHHHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCR-LTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~-iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|++++|+ +++-.  . ...+|+|+...+..+
T Consensus       137 ~L~~L~L~~n~~i~~~~--~-l~~l~~L~~L~l~~n  169 (197)
T 4ezg_A          137 KVNSIDLSYNGAITDIM--P-LKTLPELKSLNIQFD  169 (197)
T ss_dssp             SCCEEECCSCTBCCCCG--G-GGGCSSCCEEECTTB
T ss_pred             CCCEEEccCCCCccccH--h-hcCCCCCCEEECCCC
Confidence            77777777776 65532  2 345677776666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.57  E-value=1.2e-08  Score=76.90  Aligned_cols=107  Identities=19%  Similarity=0.218  Sum_probs=79.3

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ...+++|++|++++ .+++.  ..++ .+++|++|++++|..++. +..+..++++|+.|++++|.+++-.......+++
T Consensus        38 ~~~l~~L~~L~l~~n~l~~~--~~~~-~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~  113 (149)
T 2je0_A           38 TDEFEELEFLSTINVGLTSI--ANLP-KLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE  113 (149)
T ss_dssp             CTTCTTCCEEECTTSCCCCC--TTCC-CCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCT
T ss_pred             HhhcCCCcEEECcCCCCCCc--hhhh-cCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCC
Confidence            45789999999955 34544  4343 689999999999988542 4455567999999999999998864434467899


Q ss_pred             CCcEEEeeceecCHHHH--HHHHHhCCCCcEEEe
Q 035790          101 NMRFLWMSSCRLTRQGC--QEIAQAMPRLVVEVI  132 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl--~~La~~~p~L~~~~i  132 (198)
                      +|++|++++|+++...-  ......+|+|+...+
T Consensus       114 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A          114 NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            99999999999765432  234557888876543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.54  E-value=3.3e-09  Score=81.65  Aligned_cols=106  Identities=17%  Similarity=0.090  Sum_probs=66.9

Q ss_pred             CCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCc
Q 035790           25 CRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMR  103 (198)
Q Consensus        25 c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~  103 (198)
                      .++|++|++++ .+++..+......+++|++|++++|..++.   ....++++|+.|++++|.+++. +.....++++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~   98 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLT   98 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCC
Confidence            36788888844 234333333334567888888888776433   2234578888888888876653 333445678888


Q ss_pred             EEEeeceecCHH-HHHHHHHhCCCCcEEEecCC
Q 035790          104 FLWMSSCRLTRQ-GCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       104 ~L~L~~c~iTd~-gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|++++|.+++- .+..+ ..+|+|+...+..+
T Consensus        99 ~L~Ls~N~l~~~~~~~~l-~~l~~L~~L~l~~N  130 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPL-KKLECLKSLDLFNC  130 (168)
T ss_dssp             EEECBSSSCCSSGGGGGG-SSCSCCCEEECCSS
T ss_pred             EEeccCCccCcchhHHHH-hcCCCCCEEEeeCC
Confidence            888888886653 22233 35777777777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.50  E-value=1.8e-08  Score=77.45  Aligned_cols=110  Identities=15%  Similarity=0.122  Sum_probs=80.7

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      +..+++|++|++++ .+++.  ..++ .+++|++|++++|..++. +..+..++++|+.|++++|.+++-.......+++
T Consensus        45 ~~~l~~L~~L~l~~n~l~~~--~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~  120 (168)
T 2ell_A           45 TAEFVNLEFLSLINVGLISV--SNLP-KLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE  120 (168)
T ss_dssp             CGGGGGCCEEEEESSCCCCC--SSCC-CCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred             HHhCCCCCEEeCcCCCCCCh--hhhc-cCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence            46789999999954 34544  4344 689999999999988542 4455567999999999999988743213356899


Q ss_pred             CCcEEEeeceecCHHHH--HHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQGC--QEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl--~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|++++|+++....  ......+|+|+...+..+
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            99999999999655432  234557899987766654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.48  E-value=2.4e-08  Score=79.00  Aligned_cols=149  Identities=16%  Similarity=0.139  Sum_probs=96.9

Q ss_pred             hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCC
Q 035790           24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNM  102 (198)
Q Consensus        24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L  102 (198)
                      .+++|++|++++ .+++  +..+. .+++|++|++++|..++-.  .+ .++++|++|++++|.+++..... ...+++|
T Consensus        42 ~l~~L~~L~l~~n~i~~--l~~l~-~l~~L~~L~l~~n~~~~~~--~l-~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L  114 (197)
T 4ezg_A           42 QMNSLTYITLANINVTD--LTGIE-YAHNIKDLTINNIHATNYN--PI-SGLSNLERLRIMGKDVTSDKIPN-LSGLTSL  114 (197)
T ss_dssp             HHHTCCEEEEESSCCSC--CTTGG-GCTTCSEEEEESCCCSCCG--GG-TTCTTCCEEEEECTTCBGGGSCC-CTTCTTC
T ss_pred             hcCCccEEeccCCCccC--hHHHh-cCCCCCEEEccCCCCCcch--hh-hcCCCCCEEEeECCccCcccChh-hcCCCCC
Confidence            457899999955 3353  12343 6899999999999664432  33 56999999999999998866555 4579999


Q ss_pred             cEEEeeceecCHHHHHHHHHhCCCCcEEEecCCC-CchhHhHHHHHhHhhhccCCCCCCCCcceeecccCCccccccccc
Q 035790          103 RFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDD-EEETDNYVETLYMYRSLEGPRHDAPKFVTILRIIKPKLMLVQIKF  181 (198)
Q Consensus       103 ~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~~-~~~~~~~~~~~~~y~sl~g~r~d~p~~v~~l~~~~~~~~~l~~~~  181 (198)
                      ++|++++|.+++.....+. .+++|+...+..+. ...- ..+..+...+.|.--....-. ++. ...+.+|+.|+++.
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~-~~~-l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-YRG-IEDFPKLNQLYAFS  190 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC-CTT-GGGCSSCCEEEECB
T ss_pred             CEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC-hHH-hccCCCCCEEEeeC
Confidence            9999999999887777665 68999998888763 2111 123333222222111111111 111 23457788888876


Q ss_pred             CC
Q 035790          182 AE  183 (198)
Q Consensus       182 ~~  183 (198)
                      -.
T Consensus       191 N~  192 (197)
T 4ezg_A          191 QT  192 (197)
T ss_dssp             C-
T ss_pred             cc
Confidence            43

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.41  E-value=8.5e-09  Score=81.76  Aligned_cols=105  Identities=18%  Similarity=0.230  Sum_probs=74.2

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      +..+++|++|++++ .+++  +..+. .+++|++|++++|..++  +..+...+++|+.|++++|.+++-  .. ..+++
T Consensus        44 ~~~l~~L~~L~ls~n~l~~--l~~~~-~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l--~~-~~~l~  115 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEK--ISSLS-GMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASL--SG-IEKLV  115 (198)
T ss_dssp             HHHTTTCSEEECSEEEESC--CCCHH-HHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCH--HH-HHHHH
T ss_pred             HhcCCCCCEEECCCCCCcc--ccccc-cCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcC--Cc-cccCC
Confidence            45688999999954 2233  22344 47899999999887642  223334567899999999988763  33 45788


Q ss_pred             CCcEEEeeceecCHHH-HHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQG-CQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~g-l~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|++++|++++-+ +..+. .+++|+...+..+
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~-~l~~L~~L~l~~N  150 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLA-ALDKLEDLLLAGN  150 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHT-TTTTCSEEEECSC
T ss_pred             CCCEEECCCCcCCchhHHHHHh-cCCCCCEEEecCC
Confidence            9999999999977643 34444 6899998888775

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.36  E-value=6.5e-07  Score=75.84  Aligned_cols=145  Identities=12%  Similarity=0.108  Sum_probs=70.7

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..+++|+.|++++ .+++...  + ..+++|++|++++|..++...   ...+++|++|++++|.+++-  . ....+++
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~--~-~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~  266 (347)
T 4fmz_A          196 ASLTSLHYFTAYVNQITDITP--V-ANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDI--N-AVKDLTK  266 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--G-GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC--G-GGTTCTT
T ss_pred             cCCCccceeecccCCCCCCch--h-hcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCCC--h-hHhcCCC
Confidence            4566777777633 2232211  2 246667777776666532221   34566666666666665542  1 2345666


Q ss_pred             CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCCCC-chhHhHHHHHhHhhhccCCCCCCCCcceeecccCCcccccccc
Q 035790          102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSDDE-EETDNYVETLYMYRSLEGPRHDAPKFVTILRIIKPKLMLVQIK  180 (198)
Q Consensus       102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~~~-~~~~~~~~~~~~y~sl~g~r~d~p~~v~~l~~~~~~~~~l~~~  180 (198)
                      |++|++++|++++-  .. ...+++|+...+..+.. ....+.+..+...+.|.--....-. +++ ...+++|..|+++
T Consensus       267 L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~  341 (347)
T 4fmz_A          267 LKMLNVGSNQISDI--SV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRP-LASLSKMDSADFA  341 (347)
T ss_dssp             CCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC-CGG-GGGCTTCSEESSS
T ss_pred             cCEEEccCCccCCC--hh-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc-ccC-hhhhhccceeehh
Confidence            66666666664442  11 23566666666655421 1222223333333222111111111 111 3356788888877


Q ss_pred             c
Q 035790          181 F  181 (198)
Q Consensus       181 ~  181 (198)
                      +
T Consensus       342 ~  342 (347)
T 4fmz_A          342 N  342 (347)
T ss_dssp             C
T ss_pred             h
Confidence            6

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.34  E-value=6e-08  Score=81.82  Aligned_cols=111  Identities=16%  Similarity=0.143  Sum_probs=68.6

Q ss_pred             hhCCCCceeEecC-CCCH----HHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCC-hHHHHHH-
Q 035790           23 RNCRKLTRLAVSG-LLTD----RAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFG-DAALRSG-   95 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD----~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~t-D~~l~~i-   95 (198)
                      ..+++|++|++++ .+++    .....+. .+++|++|+|++|..+...... ..++++|++|++++|.++ +.++... 
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~  191 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQ-VRAFPALTSLDLSDNPGLGERGLMAAL  191 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTS-CCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHH-hccCCCCCEEECCCCCCccchhhhHHH
Confidence            4577888888844 2343    1223334 5788888888887763222122 245788888888888754 3343221 


Q ss_pred             -HhcCCCCcEEEeeceecC--HHHHHHHHHhCCCCcEEEecCC
Q 035790           96 -LHHYYNMRFLWMSSCRLT--RQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        96 -~~~~~~L~~L~L~~c~iT--d~gl~~La~~~p~L~~~~i~~~  135 (198)
                       ..++++|++|+|++|+++  ......+...++.|+...+..+
T Consensus       192 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          192 CPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN  234 (310)
T ss_dssp             CTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred             hhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence             246788888888888865  3333445556788877777655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.32  E-value=7.1e-07  Score=75.15  Aligned_cols=121  Identities=12%  Similarity=0.056  Sum_probs=80.0

Q ss_pred             CcHHHHHHHHh--hCCCCceeEecC-CCCHHHHHHHH-hcCCCCcEEEeeccCCCh----HHHHHHHhcCCCCceEEecC
Q 035790           13 PMDEGFGAIVR--NCRKLTRLAVSG-LLTDRAFGYIG-KYGKLIRTLSVAFAGDSD----MGLKYVLEGCPKLQKLEIRD   84 (198)
Q Consensus        13 ~~D~g~~ai~~--~c~~L~~L~L~g-~lTD~~L~~I~-~~~~~L~~L~L~~c~~tD----~gl~~i~~~C~~L~~L~L~~   84 (198)
                      .++.++..+.+  .+++|++|++++ .++...-..+. ...++|++|+|+++..++    .....+. .+++|++|++++
T Consensus        76 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~  154 (310)
T 4glp_A           76 VPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQ  154 (310)
T ss_dssp             CBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEEC
T ss_pred             CCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeC
Confidence            45666666554  357899999954 22333222231 468899999999988743    2223344 799999999999


Q ss_pred             CCCChHHHHHHHhcCCCCcEEEeeceecC-HHHHHHHH--HhCCCCcEEEecCC
Q 035790           85 SPFGDAALRSGLHHYYNMRFLWMSSCRLT-RQGCQEIA--QAMPRLVVEVIRSD  135 (198)
Q Consensus        85 c~~tD~~l~~i~~~~~~L~~L~L~~c~iT-d~gl~~La--~~~p~L~~~~i~~~  135 (198)
                      |.++...-. ...++++|++|+|++|+++ +.++..-.  ..+|+|+...+..+
T Consensus       155 n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N  207 (310)
T 4glp_A          155 AHSPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT  207 (310)
T ss_dssp             CSSCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred             CCcchhhHH-HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence            987543322 2357899999999999954 44443222  46788887777765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.32  E-value=1.9e-07  Score=78.91  Aligned_cols=112  Identities=18%  Similarity=0.219  Sum_probs=72.8

Q ss_pred             hhCCCCceeEecC-CCCH--HHHHHHHhc-CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChH-HHHHHH-
Q 035790           23 RNCRKLTRLAVSG-LLTD--RAFGYIGKY-GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDA-ALRSGL-   96 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD--~~L~~I~~~-~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~-~l~~i~-   96 (198)
                      ..+++|++|++++ .+++  ..+..+... .++|++|+++++..+......+ .++++|++|++++|.++.. ++.... 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            5678899999954 2343  234444321 3789999998887643222222 4688899999988876543 332222 


Q ss_pred             -hcCCCCcEEEeeceecCH--HHHHHHHHhCCCCcEEEecCC
Q 035790           97 -HHYYNMRFLWMSSCRLTR--QGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        97 -~~~~~L~~L~L~~c~iTd--~gl~~La~~~p~L~~~~i~~~  135 (198)
                       .++++|++|++++|+++.  .-...+...+++|+...+..+
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N  238 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN  238 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence             678889999999888763  233455557788888877765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.14  E-value=6.6e-07  Score=70.71  Aligned_cols=105  Identities=13%  Similarity=0.147  Sum_probs=74.6

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      +..+++|+.|++++ .+++  +..+...+++|++|++++|..++  +..+ .++++|+.|++++|.+++-........++
T Consensus        66 ~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~--l~~~-~~l~~L~~L~l~~N~i~~~~~~~~l~~l~  140 (198)
T 1ds9_A           66 LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS--LSGI-EKLVNLRVLYMSNNKITNWGEIDKLAALD  140 (198)
T ss_dssp             HHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCC--HHHH-HHHHHSSEEEESEEECCCHHHHHHHTTTT
T ss_pred             cccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCc--CCcc-ccCCCCCEEECCCCcCCchhHHHHHhcCC
Confidence            35679999999954 2231  22233346899999999998854  3344 45889999999999998754323456899


Q ss_pred             CCcEEEeeceecCHH---------HHHHHHHhCCCCcEEE
Q 035790          101 NMRFLWMSSCRLTRQ---------GCQEIAQAMPRLVVEV  131 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~---------gl~~La~~~p~L~~~~  131 (198)
                      +|++|++++|.++..         -...+...+|+|+...
T Consensus       141 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          141 KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             TCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            999999999986543         1233456789998654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.13  E-value=1.1e-07  Score=73.82  Aligned_cols=105  Identities=10%  Similarity=0.096  Sum_probs=68.9

Q ss_pred             hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCC
Q 035790           24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNM  102 (198)
Q Consensus        24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L  102 (198)
                      .+++|++|++++ .+++  +..+....++|++|+++++..++-  .. ..++++|+.|++++|.+++-. ..+...+++|
T Consensus        17 ~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L   90 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DG-FPLLRRLKTLLVNNNRICRIG-EGLDQALPDL   90 (176)
T ss_dssp             CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CC-CCCCSSCCEEECCSSCCCEEC-SCHHHHCTTC
T ss_pred             CcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc--cc-cccCCCCCEEECCCCcccccC-cchhhcCCCC
Confidence            477888888854 3342  244555556888888888877542  22 346788888888888776421 1123568888


Q ss_pred             cEEEeeceecCHHH-HHHHHHhCCCCcEEEecCC
Q 035790          103 RFLWMSSCRLTRQG-CQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       103 ~~L~L~~c~iTd~g-l~~La~~~p~L~~~~i~~~  135 (198)
                      ++|++++|++++-. +..+ ..+|+|+...+..+
T Consensus        91 ~~L~L~~N~i~~~~~~~~l-~~l~~L~~L~l~~N  123 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPL-ASLKSLTYLCILRN  123 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGG-GGCTTCCEEECCSS
T ss_pred             CEEECCCCcCCcchhhHhh-hcCCCCCEEEecCC
Confidence            88888888865422 2233 36788887777765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.12  E-value=6.6e-08  Score=80.23  Aligned_cols=109  Identities=14%  Similarity=0.185  Sum_probs=52.1

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccC-CChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAG-DSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~-~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ..+++|++|++++ .+++..-..++ .+++|++|+++++. .++.....+ .++++|++|++++|.+++..- ....+++
T Consensus        53 ~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~  129 (285)
T 1ozn_A           53 RACRNLTILWLHSNVLARIDAAAFT-GLALLEQLDLSDNAQLRSVDPATF-HGLGRLHTLHLDRCGLQELGP-GLFRGLA  129 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSCTTCCCCCTTTT-TTCTTCCEEECTTSCCCCCCT-TTTTTCT
T ss_pred             ccCCCCCEEECCCCccceeCHhhcC-CccCCCEEeCCCCCCccccCHHHh-cCCcCCCEEECCCCcCCEECH-hHhhCCc
Confidence            4566677776643 22332222232 45667777776664 222211112 346666666666665543221 1124566


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|++++|+++......+ ..+++|+...+..+
T Consensus       130 ~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n  163 (285)
T 1ozn_A          130 ALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHGN  163 (285)
T ss_dssp             TCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSS
T ss_pred             CCCEEECCCCcccccCHhHh-ccCCCccEEECCCC
Confidence            66666666665432211111 23555555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.11  E-value=6.9e-06  Score=69.19  Aligned_cols=111  Identities=16%  Similarity=0.116  Sum_probs=64.8

Q ss_pred             hCCCCceeEecC-CCCHHHHHHH-HhcCCCCcEEEeeccCCChH--HHHHHHhc-CCCCceEEecCCCCChHHHHHHHhc
Q 035790           24 NCRKLTRLAVSG-LLTDRAFGYI-GKYGKLIRTLSVAFAGDSDM--GLKYVLEG-CPKLQKLEIRDSPFGDAALRSGLHH   98 (198)
Q Consensus        24 ~c~~L~~L~L~g-~lTD~~L~~I-~~~~~~L~~L~L~~c~~tD~--gl~~i~~~-C~~L~~L~L~~c~~tD~~l~~i~~~   98 (198)
                      .+++|++|++++ .+++..-..+ ...+++|++|+|+++..++.  .+..+... +++|++|++++|.++...-.. ..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-VRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT-CCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH-hcc
Confidence            577888888843 2233222222 13577888888888776332  23333221 378888888888765433222 346


Q ss_pred             CCCCcEEEeeceecCHH-HH-HHHH-HhCCCCcEEEecCC
Q 035790           99 YYNMRFLWMSSCRLTRQ-GC-QEIA-QAMPRLVVEVIRSD  135 (198)
Q Consensus        99 ~~~L~~L~L~~c~iTd~-gl-~~La-~~~p~L~~~~i~~~  135 (198)
                      +++|++|++++|+++.. ++ ..+. ..+++|+...+..+
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N  211 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA  211 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence            78888888888875432 32 2221 45677777777665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.09  E-value=6e-07  Score=78.68  Aligned_cols=22  Identities=9%  Similarity=0.015  Sum_probs=10.8

Q ss_pred             CCCcEEEeeceecCHHHHHHHH
Q 035790          100 YNMRFLWMSSCRLTRQGCQEIA  121 (198)
Q Consensus       100 ~~L~~L~L~~c~iTd~gl~~La  121 (198)
                      ++|++|++++|+++......+.
T Consensus       212 ~~L~~L~Ls~n~l~~~~~~~~~  233 (455)
T 3v47_A          212 TSITTLDLSGNGFKESMAKRFF  233 (455)
T ss_dssp             CEEEEEECTTSCCCHHHHHHHH
T ss_pred             ceeeeEecCCCcccccchhhhh
Confidence            4455555555555544444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.08  E-value=1.8e-07  Score=77.58  Aligned_cols=107  Identities=12%  Similarity=0.106  Sum_probs=53.4

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..+++|++|++++ .+++  +..++ .+++|++|++++|..++..-. +..++++|++|++++|.++...- ....++++
T Consensus        60 ~~l~~L~~L~l~~n~l~~--~~~l~-~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~  134 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHD--ISALK-ELTNLTYLILTGNQLQSLPNG-VFDKLTNLKELVLVENQLQSLPD-GVFDKLTN  134 (272)
T ss_dssp             GGCTTCCEEECTTSCCCC--CGGGT-TCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCT-TTTTTCTT
T ss_pred             ccCCCCcEEECCCCCCCC--chhhc-CCCCCCEEECCCCccCccChh-HhcCCcCCCEEECCCCcCCccCH-HHhccCCC
Confidence            4566777777743 2233  12333 466777777766655321111 12346666777776665543211 11245666


Q ss_pred             CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |++|++++|.++.-.-. ....+++|+...+..+
T Consensus       135 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n  167 (272)
T 3rfs_A          135 LTYLNLAHNQLQSLPKG-VFDKLTNLTELDLSYN  167 (272)
T ss_dssp             CCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred             CCEEECCCCccCccCHH-HhccCccCCEEECCCC
Confidence            66666666664421111 1124566665555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.06  E-value=9.9e-07  Score=78.85  Aligned_cols=159  Identities=18%  Similarity=0.159  Sum_probs=90.9

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChH-HHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDM-GLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~-gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ..+++|++|++++ .+++.....++ .+++|++|++++|..++- .+.....++++|+.|++++|.+++..-......++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            4678888888854 34554444443 578888888888887542 33344467888888888888776521111234677


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhC-CCCcEEEecCCCCchhHhHHHHHhHhhh--ccCCC-CCCCCcceeecccCCcccc
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAM-PRLVVEVIRSDDEEETDNYVETLYMYRS--LEGPR-HDAPKFVTILRIIKPKLML  176 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~-p~L~~~~i~~~~~~~~~~~~~~~~~y~s--l~g~r-~d~p~~v~~l~~~~~~~~~  176 (198)
                      +|++|++++|+++....    ... +.|+...+..+..+.-...+..+...+.  |++-+ ...|..   ....+.+|..
T Consensus       400 ~L~~L~Ls~N~l~~~~~----~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~  472 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIF----RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG---IFDRLTSLQK  472 (520)
T ss_dssp             TCCEEECCSSCCCGGGG----GSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT---TTTTCTTCCE
T ss_pred             cCCEEECcCCCCCcchh----hhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH---HhccCCcccE
Confidence            88888888888764322    222 5777777766521101111112222222  22211 122322   2345678888


Q ss_pred             cccccCCChhhhh
Q 035790          177 VQIKFAEPSDVCQ  189 (198)
Q Consensus       177 l~~~~~~~~~~~~  189 (198)
                      |+++.-.=...|.
T Consensus       473 L~l~~N~~~c~c~  485 (520)
T 2z7x_B          473 IWLHTNPWDCSCP  485 (520)
T ss_dssp             EECCSSCBCCCHH
T ss_pred             EECcCCCCcccCC
Confidence            8888766555563

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.06  E-value=9.8e-06  Score=72.60  Aligned_cols=66  Identities=18%  Similarity=0.042  Sum_probs=34.8

Q ss_pred             cCCCCcEEEeeccCCChHHHHHH--HhcCCCCceEEecCCCCChHHH-HHHHhcCCCCcEEEeeceecC
Q 035790           48 YGKLIRTLSVAFAGDSDMGLKYV--LEGCPKLQKLEIRDSPFGDAAL-RSGLHHYYNMRFLWMSSCRLT  113 (198)
Q Consensus        48 ~~~~L~~L~L~~c~~tD~gl~~i--~~~C~~L~~L~L~~c~~tD~~l-~~i~~~~~~L~~L~L~~c~iT  113 (198)
                      .+++|++|++++|..++......  ...+++|+.|++++|.+++-.- .....++++|++|++++|+++
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  400 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH  400 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence            45666666666665554333221  2345666666666665554321 123455666666666666544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.04  E-value=1.2e-07  Score=81.12  Aligned_cols=57  Identities=18%  Similarity=0.232  Sum_probs=25.3

Q ss_pred             CCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecC
Q 035790           74 CPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRS  134 (198)
Q Consensus        74 C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~  134 (198)
                      +++|++|++++|.++  .+.....++++|++|+|++|.++.  +..-...+++|+...+..
T Consensus       182 l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~  238 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRG  238 (328)
T ss_dssp             STTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcC
Confidence            444555555544433  111113445556666665555331  111123455555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.02  E-value=3.5e-06  Score=71.21  Aligned_cols=35  Identities=14%  Similarity=0.351  Sum_probs=14.6

Q ss_pred             CCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790           74 CPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR  111 (198)
Q Consensus        74 C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~  111 (198)
                      +++|++|++++|.+++-.  . ...+++|++|++++|.
T Consensus       106 l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~  140 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQ  140 (308)
T ss_dssp             CTTCCEEECTTSCCCCCG--G-GTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCCCCCch--h-hcCCCCCCEEECCCCc
Confidence            444444444444433311  1 2344444444444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.02  E-value=4.1e-06  Score=70.88  Aligned_cols=104  Identities=18%  Similarity=0.262  Sum_probs=78.9

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ...+++|++|++++ .+++-  ..+ ..+++|+.|++++|..++.  . ....+++|++|++++|.+++..... ..+++
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~  311 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDI--NAV-KDLTKLKMLNVGSNQISDI--S-VLNNLSQLNSLFLNNNQLGNEDMEV-IGGLT  311 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGG-TTCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCGGGHHH-HHTCT
T ss_pred             hhcCCCCCEEECCCCccCCC--hhH-hcCCCcCEEEccCCccCCC--h-hhcCCCCCCEEECcCCcCCCcChhH-hhccc
Confidence            56899999999955 33442  333 3689999999999987543  2 3467999999999999998877655 45799


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|++++|++++..-   ...+|.|+...+..+
T Consensus       312 ~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          312 NLTTLFLSQNHITDIRP---LASLSKMDSADFANQ  343 (347)
T ss_dssp             TCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC
T ss_pred             cCCEEEccCCccccccC---hhhhhccceeehhhh
Confidence            99999999999665322   347889987777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.96  E-value=3.3e-06  Score=78.68  Aligned_cols=101  Identities=20%  Similarity=0.224  Sum_probs=54.2

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..+++|+.|+|++ .+++..  .++ .+++|+.|+|++|..++  +.. ...+++|+.|+|++|.+++-  .. ..++++
T Consensus        62 ~~l~~L~~L~Ls~N~l~~~~--~l~-~l~~L~~L~Ls~N~l~~--l~~-l~~l~~L~~L~Ls~N~l~~l--~~-l~~l~~  132 (605)
T 1m9s_A           62 QYLPNVTKLFLNGNKLTDIK--PLT-NLKNLGWLFLDENKIKD--LSS-LKDLKKLKSLSLEHNGISDI--NG-LVHLPQ  132 (605)
T ss_dssp             GGCTTCCEEECTTSCCCCCG--GGG-GCTTCCEEECCSSCCCC--CTT-STTCTTCCEEECTTSCCCCC--GG-GGGCTT
T ss_pred             ccCCCCCEEEeeCCCCCCCh--hhc-cCCCCCEEECcCCCCCC--Chh-hccCCCCCEEEecCCCCCCC--cc-ccCCCc
Confidence            4567777777743 223211  133 56677777777665532  112 23466667777766665542  11 345666


Q ss_pred             CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |+.|+|++|++++-  .. ...+++|+.+.+..+
T Consensus       133 L~~L~Ls~N~l~~l--~~-l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A          133 LESLYLGNNKITDI--TV-LSRLTKLDTLSLEDN  163 (605)
T ss_dssp             CSEEECCSSCCCCC--GG-GGSCTTCSEEECCSS
T ss_pred             cCEEECCCCccCCc--hh-hcccCCCCEEECcCC
Confidence            66666666664442  12 234566666555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.95  E-value=8.5e-08  Score=80.22  Aligned_cols=62  Identities=21%  Similarity=0.357  Sum_probs=27.7

Q ss_pred             cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790           73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      ++++|++|++++|.+++..+.....++++|++|++++|.++......+ ..+++|+...+..+
T Consensus       148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N  209 (306)
T 2z66_A          148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHN  209 (306)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTS
T ss_pred             cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh-cCCCCCCEEECCCC
Confidence            345555555555544432222223445555666665555433211112 23455555555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.95  E-value=3.2e-06  Score=70.98  Aligned_cols=101  Identities=21%  Similarity=0.250  Sum_probs=50.3

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..+++|++|++++ .+++..  .+ ..+++|++|+++++..++  +.. ..++++|+.|++++|.+++-  . ...++++
T Consensus        65 ~~l~~L~~L~L~~n~l~~~~--~l-~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~i~~~--~-~l~~l~~  135 (291)
T 1h6t_A           65 QYLPNVTKLFLNGNKLTDIK--PL-ANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNGISDI--N-GLVHLPQ  135 (291)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--GG-TTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSCCCCC--G-GGGGCTT
T ss_pred             hcCCCCCEEEccCCccCCCc--cc-ccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCcCCCC--h-hhcCCCC
Confidence            4566777777743 223211  12 245666666666665532  112 23466666666666655442  1 1345556


Q ss_pred             CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |++|++++|.+++-  .. ...+++|+...+..+
T Consensus       136 L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          136 LESLYLGNNKITDI--TV-LSRLTKLDTLSLEDN  166 (291)
T ss_dssp             CCEEECCSSCCCCC--GG-GGGCTTCSEEECCSS
T ss_pred             CCEEEccCCcCCcc--hh-hccCCCCCEEEccCC
Confidence            66666666654432  11 224555555555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.93  E-value=4.1e-07  Score=77.74  Aligned_cols=84  Identities=17%  Similarity=0.085  Sum_probs=40.2

Q ss_pred             cCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHH--------HhcCCCCcEEEeeceecCHHHHHH
Q 035790           48 YGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSG--------LHHYYNMRFLWMSSCRLTRQGCQE  119 (198)
Q Consensus        48 ~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i--------~~~~~~L~~L~L~~c~iTd~gl~~  119 (198)
                      .+++|++|+|++|..+  .+..-..++++|+.|++++|.+...--..+        ..++++|++|++++|.++  .+..
T Consensus       125 ~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~  200 (328)
T 4fcg_A          125 QFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPA  200 (328)
T ss_dssp             GGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCG
T ss_pred             ccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchH
Confidence            3455555555555442  111112345566666666553211100000        123666777777776654  1211


Q ss_pred             HHHhCCCCcEEEecCC
Q 035790          120 IAQAMPRLVVEVIRSD  135 (198)
Q Consensus       120 La~~~p~L~~~~i~~~  135 (198)
                      -...+++|+...+..+
T Consensus       201 ~l~~l~~L~~L~L~~N  216 (328)
T 4fcg_A          201 SIANLQNLKSLKIRNS  216 (328)
T ss_dssp             GGGGCTTCCEEEEESS
T ss_pred             hhcCCCCCCEEEccCC
Confidence            1345677777766655

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.93  E-value=3.4e-07  Score=75.63  Aligned_cols=109  Identities=16%  Similarity=0.088  Sum_probs=59.4

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      .++++|++|++++ .++.-. ..+...+++|++|+++++..+..... +..++++|++|++++|.++...-. ...++++
T Consensus        58 ~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~  134 (270)
T 2o6q_A           58 HRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKLQALPIG-VFDQLVNLAELRLDRNQLKSLPPR-VFDSLTK  134 (270)
T ss_dssp             SSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEECCSSCCCCCCTT-TTTTCSSCCEEECCSSCCCCCCTT-TTTTCTT
T ss_pred             cCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEECCCCcCCcCCHh-HcccccCCCEEECCCCccCeeCHH-HhCcCcC
Confidence            4567777777743 222111 11223467777777777665321111 224577777777777765543211 1346777


Q ss_pred             CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |++|+|++|.++.-.-..+ ..+++|+...+..+
T Consensus       135 L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n  167 (270)
T 2o6q_A          135 LTYLSLGYNELQSLPKGVF-DKLTSLKELRLYNN  167 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccCHhHc-cCCcccceeEecCC
Confidence            7777777777543221112 24677776666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.92  E-value=7.9e-07  Score=73.65  Aligned_cols=85  Identities=9%  Similarity=0.073  Sum_probs=50.5

Q ss_pred             cCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCC
Q 035790           48 YGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRL  127 (198)
Q Consensus        48 ~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L  127 (198)
                      .+++|+.|+++++..++..... ..++++|++|++++|.+++..... ..++++|++|++++|.++......+ ..+++|
T Consensus       151 ~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L  227 (285)
T 1ozn_A          151 DLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEAL-APLRAL  227 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHH-TTCTTC
T ss_pred             cCCCccEEECCCCcccccCHHH-hcCccccCEEECCCCcccccCHhH-ccCcccccEeeCCCCcCCcCCHHHc-ccCccc
Confidence            3566666666666543211111 234677777777777665543222 3567788888888887654333333 367888


Q ss_pred             cEEEecCC
Q 035790          128 VVEVIRSD  135 (198)
Q Consensus       128 ~~~~i~~~  135 (198)
                      +...+..+
T Consensus       228 ~~L~l~~N  235 (285)
T 1ozn_A          228 QYLRLNDN  235 (285)
T ss_dssp             CEEECCSS
T ss_pred             CEEeccCC
Confidence            87777665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.91  E-value=2.2e-07  Score=82.40  Aligned_cols=63  Identities=21%  Similarity=0.233  Sum_probs=28.1

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPF   87 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~   87 (198)
                      ..+++|++|+|++ .+++..-..++ .+++|++|+|+++..+..... +..++++|++|+|++|.+
T Consensus        53 ~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i  116 (477)
T 2id5_A           53 ASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNRLKLIPLG-VFTGLSNLTKLDISENKI  116 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCTT-SSTTCTTCCEEECTTSCC
T ss_pred             cCCCCCCEEECCCCccCEeChhhhh-CCccCCEEECCCCcCCccCcc-cccCCCCCCEEECCCCcc
Confidence            4566666666643 22322112222 355666666655544211111 112355555555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.91  E-value=4.5e-07  Score=74.81  Aligned_cols=110  Identities=15%  Similarity=0.063  Sum_probs=59.9

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..+++|++|++++ .++...-..++ .+++|++|+++++..+......+ .++++|++|++++|.++.-.-.. ..++++
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~  125 (276)
T 2z62_A           49 FSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFP-IGHLKT  125 (276)
T ss_dssp             TTCTTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTSCCCCSTTCC-CTTCTT
T ss_pred             ccccCCcEEECCCCcCCccCHHHcc-CCcCCCEEECCCCccCccChhhh-cCCccccEEECCCCCccccCchh-cccCCC
Confidence            4567777777743 22322111222 46777777777766533222222 35677777777777554322111 346777


Q ss_pred             CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |++|++++|.++...+......+++|+...+..+
T Consensus       126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N  159 (276)
T 2z62_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (276)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence            7777777777554222222335677776666654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.90  E-value=1.3e-06  Score=76.49  Aligned_cols=134  Identities=11%  Similarity=0.046  Sum_probs=69.2

Q ss_pred             CCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcE
Q 035790           50 KLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVV  129 (198)
Q Consensus        50 ~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~  129 (198)
                      ++|+.|+++++..++..-. ...++++|++|++++|.+++..-.. ..++++|++|+|++|.++......+ ..++.|+.
T Consensus       275 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~  351 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNEINKIDDNA-FWGLTHLLKLNLSQNFLGSIDSRMF-ENLDKLEV  351 (455)
T ss_dssp             SCCCEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGG-TTCTTCCE
T ss_pred             cCceEEEecCccccccchh-hcccCCCCCEEECCCCcccccChhH-hcCcccCCEEECCCCccCCcChhHh-cCcccCCE
Confidence            4666666666655332111 2245778888888877766543222 3467778888888877543322222 35677777


Q ss_pred             EEecCCCC-chhHhHHHHHhHhhhc--cCCC-CCCCCcceeecccCCcccccccccCCChhhhh
Q 035790          130 EVIRSDDE-EETDNYVETLYMYRSL--EGPR-HDAPKFVTILRIIKPKLMLVQIKFAEPSDVCQ  189 (198)
Q Consensus       130 ~~i~~~~~-~~~~~~~~~~~~y~sl--~g~r-~d~p~~v~~l~~~~~~~~~l~~~~~~~~~~~~  189 (198)
                      ..+..+.. ......+..+...+.|  ++-+ ...|..   ....+.+|+.|++++-.=++.|.
T Consensus       352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EECCCCcccccChhhccccccccEEECCCCccccCCHh---HhccCCcccEEEccCCCcccCCC
Confidence            77765521 1111222333222222  2211 112211   12345678888887765555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.89  E-value=9.7e-06  Score=68.54  Aligned_cols=89  Identities=13%  Similarity=0.232  Sum_probs=65.1

Q ss_pred             HHHHHHHhcCCCCcEEEeeccCCCh-HHHHHHHhcCCCCceEEecCCCCChH-HHHHHHhcCCCCcEEEeeceecCH---
Q 035790           40 RAFGYIGKYGKLIRTLSVAFAGDSD-MGLKYVLEGCPKLQKLEIRDSPFGDA-ALRSGLHHYYNMRFLWMSSCRLTR---  114 (198)
Q Consensus        40 ~~L~~I~~~~~~L~~L~L~~c~~tD-~gl~~i~~~C~~L~~L~L~~c~~tD~-~l~~i~~~~~~L~~L~L~~c~iTd---  114 (198)
                      ..+..+.+.+++|++|+|+++..++ .++..+...+++|+.|+|++|.|++- .+.. ...+ +|++|+|++|.++.   
T Consensus       160 ~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          160 ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTSTTGGGCS
T ss_pred             HHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCcCccccC
Confidence            3455566778999999999998833 45555667899999999999988765 2332 2233 89999999999763   


Q ss_pred             ---HHHHHHHHhCCCCcEE
Q 035790          115 ---QGCQEIAQAMPRLVVE  130 (198)
Q Consensus       115 ---~gl~~La~~~p~L~~~  130 (198)
                         .-...+...+|+|+.+
T Consensus       238 ~~~~y~~~il~~~P~L~~L  256 (267)
T 3rw6_A          238 DQSTYISAIRERFPKLLRL  256 (267)
T ss_dssp             SHHHHHHHHHHHCTTCCEE
T ss_pred             cchhHHHHHHHHCcccCeE
Confidence               2234567789998754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.89  E-value=2.7e-06  Score=65.84  Aligned_cols=111  Identities=12%  Similarity=0.099  Sum_probs=77.0

Q ss_pred             HHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcC
Q 035790           21 IVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHY   99 (198)
Q Consensus        21 i~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~   99 (198)
                      +....++|+.|++++ .+++-  ..++ .+++|++|+++++..++-. ..+..++++|+.|++++|.+++-.-.....++
T Consensus        37 ~~~~~~~L~~L~Ls~N~l~~~--~~l~-~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l  112 (176)
T 1a9n_A           37 LGATLDQFDAIDFSDNEIRKL--DGFP-LLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSLVELGDLDPLASL  112 (176)
T ss_dssp             GGGGTTCCSEEECCSSCCCEE--CCCC-CCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGC
T ss_pred             hhhcCCCCCEEECCCCCCCcc--cccc-cCCCCCEEECCCCcccccC-cchhhcCCCCCEEECCCCcCCcchhhHhhhcC
Confidence            344456999999965 34542  3444 5899999999999874321 12235699999999999988763311134689


Q ss_pred             CCCcEEEeeceecCHH--HHHHHHHhCCCCcEEEecCC
Q 035790          100 YNMRFLWMSSCRLTRQ--GCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       100 ~~L~~L~L~~c~iTd~--gl~~La~~~p~L~~~~i~~~  135 (198)
                      ++|++|++++|+++..  ....+...+|+|+.......
T Consensus       113 ~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A          113 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            9999999999996532  22234568999987766654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.88  E-value=7e-07  Score=73.92  Aligned_cols=104  Identities=12%  Similarity=0.084  Sum_probs=73.4

Q ss_pred             hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCC
Q 035790           24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNM  102 (198)
Q Consensus        24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L  102 (198)
                      .+++|++|.+++ .+++  +..++ .+++|++|+++++..++  +.. ..++++|++|++++|.+++-.- ....++++|
T Consensus        39 ~l~~L~~L~l~~~~i~~--~~~l~-~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  111 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKS--VQGIQ-YLPNVRYLALGGNKLHD--ISA-LKELTNLTYLILTGNQLQSLPN-GVFDKLTNL  111 (272)
T ss_dssp             HHTTCCEEECTTSCCCC--CTTGG-GCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred             cccceeeeeeCCCCccc--ccccc-cCCCCcEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCccCh-hHhcCCcCC
Confidence            467899999954 2232  22344 68999999999998754  223 3579999999999998774321 223678999


Q ss_pred             cEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          103 RFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       103 ~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      ++|++++|+++...-.. ...+++|+...+..+
T Consensus       112 ~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n  143 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGV-FDKLTNLTYLNLAHN  143 (272)
T ss_dssp             CEEECTTSCCCCCCTTT-TTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHHH-hccCCCCCEEECCCC
Confidence            99999999966322111 236788988888765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.87  E-value=3.3e-07  Score=86.75  Aligned_cols=87  Identities=16%  Similarity=0.054  Sum_probs=36.5

Q ss_pred             hCCCCceeEecC-CCCHHHHH--HHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHH--HHhc
Q 035790           24 NCRKLTRLAVSG-LLTDRAFG--YIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRS--GLHH   98 (198)
Q Consensus        24 ~c~~L~~L~L~g-~lTD~~L~--~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~--i~~~   98 (198)
                      .+++|++|+|++ .++...-.  .++ .+++|++|+|++|..+......+..++++|++|++++|.+++.....  ...+
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  176 (768)
T 3rgz_A           98 CSASLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG  176 (768)
T ss_dssp             CCTTCCEEECCSSEEEEEGGGGGGGG-GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred             cCCCCCEEECCCCcCCCcCCChHHHh-CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence            455666666643 11221111  333 35566666665554321111111134555555555555443322111  1234


Q ss_pred             CCCCcEEEeecee
Q 035790           99 YYNMRFLWMSSCR  111 (198)
Q Consensus        99 ~~~L~~L~L~~c~  111 (198)
                      +++|++|++++|.
T Consensus       177 l~~L~~L~Ls~n~  189 (768)
T 3rgz_A          177 CGELKHLAISGNK  189 (768)
T ss_dssp             CTTCCEEECCSSE
T ss_pred             CCCCCEEECCCCc
Confidence            4444444444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.86  E-value=1.4e-06  Score=73.66  Aligned_cols=78  Identities=13%  Similarity=0.174  Sum_probs=55.6

Q ss_pred             CCCCCCcHHHHHHHHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCC
Q 035790            8 HATGEPMDEGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSP   86 (198)
Q Consensus         8 ~~t~~~~D~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~   86 (198)
                      .+++.-..+.+..+.+.+++|++|+|++ .+++.....++ .+++|++|+|++|..++..  . ..++++|++|++++|.
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHT-TCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhh-CCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc
Confidence            3555566677778888899999999955 34554444454 6899999999998773211  1 3568889999998886


Q ss_pred             CCh
Q 035790           87 FGD   89 (198)
Q Consensus        87 ~tD   89 (198)
                      +++
T Consensus        92 l~~   94 (317)
T 3o53_A           92 VQE   94 (317)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.86  E-value=4e-06  Score=78.11  Aligned_cols=81  Identities=21%  Similarity=0.280  Sum_probs=38.1

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..+++|++|+|++ .+++  +..++ .+++|+.|+|++|..++  +.. ...+++|+.|+|++|.+++-   .....+++
T Consensus        84 ~~l~~L~~L~Ls~N~l~~--l~~l~-~l~~L~~L~Ls~N~l~~--l~~-l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~  154 (605)
T 1m9s_A           84 TNLKNLGWLFLDENKIKD--LSSLK-DLKKLKSLSLEHNGISD--ING-LVHLPQLESLYLGNNKITDI---TVLSRLTK  154 (605)
T ss_dssp             GGCTTCCEEECCSSCCCC--CTTST-TCTTCCEEECTTSCCCC--CGG-GGGCTTCSEEECCSSCCCCC---GGGGSCTT
T ss_pred             ccCCCCCEEECcCCCCCC--Chhhc-cCCCCCEEEecCCCCCC--Ccc-ccCCCccCEEECCCCccCCc---hhhcccCC
Confidence            4566666666633 2222  11222 35556666665555422  111 23355555555555554442   12334555


Q ss_pred             CcEEEeeceec
Q 035790          102 MRFLWMSSCRL  112 (198)
Q Consensus       102 L~~L~L~~c~i  112 (198)
                      |+.|+|++|.+
T Consensus       155 L~~L~Ls~N~l  165 (605)
T 1m9s_A          155 LDTLSLEDNQI  165 (605)
T ss_dssp             CSEEECCSSCC
T ss_pred             CCEEECcCCcC
Confidence            55555555553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.85  E-value=9.5e-06  Score=68.06  Aligned_cols=79  Identities=15%  Similarity=0.153  Sum_probs=38.9

Q ss_pred             cCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCC
Q 035790           48 YGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRL  127 (198)
Q Consensus        48 ~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L  127 (198)
                      .+++|++|++++|..++..  . ..++++|+.|++++|.+++-  .. ..++++|++|++++|++++-  ..+ ..+++|
T Consensus        66 ~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~i~~~--~~l-~~l~~L  136 (291)
T 1h6t_A           66 YLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHNGISDI--NGL-VHLPQL  136 (291)
T ss_dssp             GCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTSCCCCC--GGG-GGCTTC
T ss_pred             cCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCCcCCCC--hhh-cCCCCC
Confidence            3556666666655542211  1 23456666666666655441  11 34556666666666654331  112 245555


Q ss_pred             cEEEecCC
Q 035790          128 VVEVIRSD  135 (198)
Q Consensus       128 ~~~~i~~~  135 (198)
                      +...+..+
T Consensus       137 ~~L~l~~n  144 (291)
T 1h6t_A          137 ESLYLGNN  144 (291)
T ss_dssp             CEEECCSS
T ss_pred             CEEEccCC
Confidence            55555543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.85  E-value=4.8e-07  Score=80.20  Aligned_cols=109  Identities=17%  Similarity=0.140  Sum_probs=66.2

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      .++++|++|+|++ .++.-.-..+ ..+++|++|+|+++..+...-.. ..++++|++|++++|.++...-.. ..++++
T Consensus        77 ~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~  153 (477)
T 2id5_A           77 NNLFNLRTLGLRSNRLKLIPLGVF-TGLSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRA-FSGLNS  153 (477)
T ss_dssp             TTCTTCCEEECCSSCCCSCCTTSS-TTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTTCCEECTTS-STTCTT
T ss_pred             hCCccCCEEECCCCcCCccCcccc-cCCCCCCEEECCCCccccCChhH-ccccccCCEEECCCCccceeChhh-ccCCCC
Confidence            5688899999854 2332211112 25788888888887763221112 246888888888888665432222 346778


Q ss_pred             CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |++|+|++|+++......+ ..+++|+...+..+
T Consensus       154 L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n  186 (477)
T 2id5_A          154 LEQLTLEKCNLTSIPTEAL-SHLHGLIVLRLRHL  186 (477)
T ss_dssp             CCEEEEESCCCSSCCHHHH-TTCTTCCEEEEESC
T ss_pred             CCEEECCCCcCcccChhHh-cccCCCcEEeCCCC
Confidence            8888888887554332333 35677776666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.84  E-value=9.9e-06  Score=71.86  Aligned_cols=35  Identities=17%  Similarity=0.300  Sum_probs=14.8

Q ss_pred             CCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790           74 CPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR  111 (198)
Q Consensus        74 C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~  111 (198)
                      +++|++|++++|.+++-.-   ...+++|++|++++|+
T Consensus       286 l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          286 LTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSC
T ss_pred             CCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCc
Confidence            4444444444443332110   2344445555554444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.80  E-value=3.8e-07  Score=82.99  Aligned_cols=10  Identities=0%  Similarity=0.136  Sum_probs=4.7

Q ss_pred             Cccccccccc
Q 035790          172 PKLMLVQIKF  181 (198)
Q Consensus       172 ~~~~~l~~~~  181 (198)
                      .+|+.|+++.
T Consensus       547 ~~L~~L~l~~  556 (606)
T 3t6q_A          547 SQQRTINLRQ  556 (606)
T ss_dssp             HTSSEEECTT
T ss_pred             CCCCEEeCCC
Confidence            3444454444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.80  E-value=1.8e-07  Score=84.05  Aligned_cols=86  Identities=13%  Similarity=0.027  Sum_probs=42.1

Q ss_pred             CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790           49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV  128 (198)
Q Consensus        49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~  128 (198)
                      +++|++|++++|..++........++++|+.|++++|.+++..- ....++++|++|++++|.+++..+......+++|+
T Consensus       395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  473 (570)
T 2z63_A          395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  473 (570)
T ss_dssp             CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch-hhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence            44555555544433211111122346666666666665443221 12345667777777777654322222223566666


Q ss_pred             EEEecCC
Q 035790          129 VEVIRSD  135 (198)
Q Consensus       129 ~~~i~~~  135 (198)
                      ...+..+
T Consensus       474 ~L~l~~n  480 (570)
T 2z63_A          474 FLDLSQC  480 (570)
T ss_dssp             EEECTTS
T ss_pred             EEECCCC
Confidence            6666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.79  E-value=6.7e-07  Score=74.69  Aligned_cols=85  Identities=12%  Similarity=0.065  Sum_probs=40.8

Q ss_pred             cCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhC-CC
Q 035790           48 YGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAM-PR  126 (198)
Q Consensus        48 ~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~-p~  126 (198)
                      .+++|++|++++|..++.....+ .++++|++|++++|.+++..... ...+++|++|++++|+++......+. .+ +.
T Consensus       173 ~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~~  249 (306)
T 2z66_A          173 ELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSS  249 (306)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTSCCCBCSSSSCC-CCCTT
T ss_pred             hCcCCCEEECCCCCcCCcCHHHh-cCCCCCCEEECCCCccCccChhh-ccCcccCCEeECCCCCCcccCHHHHH-hhhcc
Confidence            34556666665555433211222 34566666666666554322111 24566666666666665443222222 23 25


Q ss_pred             CcEEEecCC
Q 035790          127 LVVEVIRSD  135 (198)
Q Consensus       127 L~~~~i~~~  135 (198)
                      |+...+..+
T Consensus       250 L~~L~L~~N  258 (306)
T 2z66_A          250 LAFLNLTQN  258 (306)
T ss_dssp             CCEEECTTC
T ss_pred             CCEEEccCC
Confidence            555555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.79  E-value=1.1e-05  Score=68.08  Aligned_cols=82  Identities=24%  Similarity=0.313  Sum_probs=38.4

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..+++|++|++++ .+++-  ..++ .+++|++|++++|..++.  .. ..++++|++|++++|.+++-.-   ...+++
T Consensus        82 ~~l~~L~~L~L~~n~l~~~--~~~~-~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~---l~~l~~  152 (308)
T 1h6u_A           82 KNLTKITELELSGNPLKNV--SAIA-GLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLYLDLNQITNISP---LAGLTN  152 (308)
T ss_dssp             TTCCSCCEEECCSCCCSCC--GGGT-TCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG---GGGCTT
T ss_pred             ccCCCCCEEEccCCcCCCc--hhhc-CCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEECCCCccCcCcc---ccCCCC
Confidence            4566666666633 22221  1222 355666666655554221  11 2345555555555554433211   334555


Q ss_pred             CcEEEeeceecC
Q 035790          102 MRFLWMSSCRLT  113 (198)
Q Consensus       102 L~~L~L~~c~iT  113 (198)
                      |++|++++|.++
T Consensus       153 L~~L~l~~n~l~  164 (308)
T 1h6u_A          153 LQYLSIGNAQVS  164 (308)
T ss_dssp             CCEEECCSSCCC
T ss_pred             ccEEEccCCcCC
Confidence            555555555533

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.76  E-value=1.1e-06  Score=79.21  Aligned_cols=78  Identities=13%  Similarity=0.174  Sum_probs=53.7

Q ss_pred             CCCCCCcHHHHHHHHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCC
Q 035790            8 HATGEPMDEGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSP   86 (198)
Q Consensus         8 ~~t~~~~D~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~   86 (198)
                      .++..-...++..+...+++|++|+|++ .+++..-..++ .+++|++|+|++|..++..  . ..++++|+.|+|++|.
T Consensus        16 ~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~   91 (487)
T 3oja_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY   91 (487)
T ss_dssp             SCCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSE
T ss_pred             cCchhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCc
Confidence            3556666677777777788999999955 33443223343 6899999999998873211  1 3568889988888886


Q ss_pred             CCh
Q 035790           87 FGD   89 (198)
Q Consensus        87 ~tD   89 (198)
                      +++
T Consensus        92 l~~   94 (487)
T 3oja_A           92 VQE   94 (487)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.76  E-value=3.3e-07  Score=83.40  Aligned_cols=11  Identities=36%  Similarity=0.507  Sum_probs=6.1

Q ss_pred             hhCCCCceeEe
Q 035790           23 RNCRKLTRLAV   33 (198)
Q Consensus        23 ~~c~~L~~L~L   33 (198)
                      ..+++|++|++
T Consensus       373 ~~l~~L~~L~l  383 (606)
T 3t6q_A          373 RNLSHLQSLNL  383 (606)
T ss_dssp             TTCTTCCEEEC
T ss_pred             ccCCCCCEEEC
Confidence            34555666655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.75  E-value=4.2e-06  Score=69.37  Aligned_cols=56  Identities=13%  Similarity=0.121  Sum_probs=27.4

Q ss_pred             cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecC
Q 035790           73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRS  134 (198)
Q Consensus        73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~  134 (198)
                      ++++|+.|++++|.+++-.   ....+++|++|++++|++++.  .. ...+++|+...+..
T Consensus       126 ~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          126 HLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT--GG-LTRLKKVNWIDLTG  181 (263)
T ss_dssp             TCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC--TT-STTCCCCCEEEEEE
T ss_pred             CcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch--HH-hccCCCCCEEeCCC
Confidence            4555555555555554431   134455566666666554443  11 22455555444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.74  E-value=1e-06  Score=72.02  Aligned_cols=39  Identities=13%  Similarity=0.181  Sum_probs=16.5

Q ss_pred             cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceec
Q 035790           73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL  112 (198)
Q Consensus        73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~i  112 (198)
                      ++++|++|++++|.++.-.- ....++++|++|+|++|.+
T Consensus       105 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l  143 (251)
T 3m19_A          105 HLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQL  143 (251)
T ss_dssp             TCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC
T ss_pred             ccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcC
Confidence            34455555555554432110 1113345555555555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.73  E-value=3.8e-07  Score=83.00  Aligned_cols=39  Identities=28%  Similarity=0.490  Sum_probs=16.2

Q ss_pred             CCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceec
Q 035790           74 CPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL  112 (198)
Q Consensus        74 C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~i  112 (198)
                      +++|++|++++|.+++..+.....++++|++|++++|++
T Consensus       447 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  485 (606)
T 3vq2_A          447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL  485 (606)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence            444444444444433321112223445555555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.72  E-value=3.4e-06  Score=77.46  Aligned_cols=111  Identities=19%  Similarity=0.227  Sum_probs=68.9

Q ss_pred             HHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcC
Q 035790           21 IVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHY   99 (198)
Q Consensus        21 i~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~   99 (198)
                      ++..+++|++|+|++ .+++..-..++ .+++|++|+|++|..+...-. +..++++|+.|+|++|.++.-. ..+..++
T Consensus        70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l  146 (597)
T 3oja_B           70 LLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLP-RGIFHNT  146 (597)
T ss_dssp             HHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCC-TTTTTTC
T ss_pred             HHccCCCCcEEECCCCCCCCCChHHhc-CCCCCCEEECCCCcCCCCCHH-HHcCCCCCCEEEeeCCCCCCCC-HHHhccC
Confidence            456788888888854 23433222333 578888888888876432222 2246888888888888766321 1123577


Q ss_pred             CCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          100 YNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       100 ~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      ++|++|+|++|.++...-..+ ..+++|+...+..+
T Consensus       147 ~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N  181 (597)
T 3oja_B          147 PKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSN  181 (597)
T ss_dssp             TTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECTTS
T ss_pred             CCCCEEEeeCCcCCCCChhhh-hcCCcCcEEECcCC
Confidence            888888888887543222222 35677877777665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.72  E-value=1.9e-06  Score=74.48  Aligned_cols=111  Identities=18%  Similarity=0.214  Sum_probs=61.5

Q ss_pred             HHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcC
Q 035790           21 IVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHY   99 (198)
Q Consensus        21 i~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~   99 (198)
                      +...+++|++|++++ .+++.....++ .+++|++|+++++..++..-.. ..++++|++|++++|.+++-. ..+..++
T Consensus        64 ~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~-~~~~~~l  140 (390)
T 3o6n_A           64 LLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHV-FQNVPLLTVLVLERNDLSSLP-RGIFHNT  140 (390)
T ss_dssp             HHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCC-TTTTTTC
T ss_pred             HhcccccCcEEECCCCcccccChhhcc-CCCCcCEEECCCCCCCcCCHHH-hcCCCCCCEEECCCCccCcCC-HHHhcCC
Confidence            346678888888854 23432222333 4677888888777653322122 245777777777777665321 1112456


Q ss_pred             CCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          100 YNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       100 ~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      ++|++|++++|.++...-..+ ..+++|+...+..+
T Consensus       141 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          141 PKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSN  175 (390)
T ss_dssp             TTCCEEECCSSCCCBCCTTTT-SSCTTCCEEECCSS
T ss_pred             CCCcEEECCCCccCccChhhc-cCCCCCCEEECCCC
Confidence            777777777776443211112 24566666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.70  E-value=1.1e-05  Score=76.32  Aligned_cols=40  Identities=20%  Similarity=0.059  Sum_probs=19.8

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD   62 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~   62 (198)
                      ..|++|++|+|++ .++......+...+++|++|++++|..
T Consensus       123 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  163 (768)
T 3rgz_A          123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI  163 (768)
T ss_dssp             GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred             hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence            4577777777743 112111111212456666666666555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.69  E-value=5.7e-07  Score=81.81  Aligned_cols=110  Identities=10%  Similarity=-0.089  Sum_probs=55.3

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..+++|++|++++ .++... ..++ .+++|+.|++++|..++..-.....++++|+.|++++|.++...-. ...++++
T Consensus       373 ~~~~~L~~L~L~~n~l~~~~-~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~  449 (606)
T 3vq2_A          373 LGTNSLRHLDLSFNGAIIMS-ANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-IFLGLTS  449 (606)
T ss_dssp             HCCSCCCEEECCSCSEEEEC-CCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT-TTTTCTT
T ss_pred             ccCCcccEeECCCCccccch-hhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh-hhcCCCC
Confidence            4567777777743 112111 1122 4567777777666552221111223566777777777655432211 1345667


Q ss_pred             CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |++|++++|++++..+......+++|+...+..+
T Consensus       450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  483 (606)
T 3vq2_A          450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC  483 (606)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             CCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence            7777777776554222222234566665555543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.69  E-value=5.6e-05  Score=67.65  Aligned_cols=91  Identities=20%  Similarity=0.193  Sum_probs=63.2

Q ss_pred             HHhhCCCCceeEecC-CCCHHHHHHH--HhcCCCCcEEEeeccCCChHH-HHHHHhcCCCCceEEecCCCCChHHHHHHH
Q 035790           21 IVRNCRKLTRLAVSG-LLTDRAFGYI--GKYGKLIRTLSVAFAGDSDMG-LKYVLEGCPKLQKLEIRDSPFGDAALRSGL   96 (198)
Q Consensus        21 i~~~c~~L~~L~L~g-~lTD~~L~~I--~~~~~~L~~L~L~~c~~tD~g-l~~i~~~C~~L~~L~L~~c~~tD~~l~~i~   96 (198)
                      +...+++|++|++++ .+++......  ...+++|++|++++|..++.. .......+++|+.|++++|.++.  +....
T Consensus       329 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~  406 (549)
T 2z81_A          329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP--MPDSC  406 (549)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC--CCSCC
T ss_pred             HHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc--CChhh
Confidence            345799999999965 4577655432  235799999999999885432 22345679999999999997762  22223


Q ss_pred             hcCCCCcEEEeeceecC
Q 035790           97 HHYYNMRFLWMSSCRLT  113 (198)
Q Consensus        97 ~~~~~L~~L~L~~c~iT  113 (198)
                      ..+++|++|++++|+++
T Consensus       407 ~~~~~L~~L~Ls~N~l~  423 (549)
T 2z81_A          407 QWPEKMRFLNLSSTGIR  423 (549)
T ss_dssp             CCCTTCCEEECTTSCCS
T ss_pred             cccccccEEECCCCCcc
Confidence            45667777777777643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.65  E-value=2.3e-06  Score=67.68  Aligned_cols=109  Identities=12%  Similarity=0.099  Sum_probs=54.7

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..+++|++|++++ .++.-.-. +...+++|++|+++++..+...- .+..++++|++|++++|.++.-.- ....++++
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~  125 (208)
T 2o6s_A           49 DELTSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQ  125 (208)
T ss_dssp             TTCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTT
T ss_pred             cccccCcEEECCCCccCccChh-hcCCCCCcCEEECCCCcCCccCH-hHhcCccCCCEEEcCCCcCcccCH-hHhccCCc
Confidence            4566677777643 22321111 11245677777777665531111 112456677777777765543211 11245677


Q ss_pred             CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |++|+|++|+++.-.- .....+++|+...+..+
T Consensus       126 L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          126 LKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSC
T ss_pred             CCEEECCCCccceeCH-HHhccCCCccEEEecCC
Confidence            7777777776442111 11234566666666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.65  E-value=8.5e-07  Score=79.69  Aligned_cols=39  Identities=15%  Similarity=0.233  Sum_probs=17.7

Q ss_pred             cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceec
Q 035790           73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL  112 (198)
Q Consensus        73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~i  112 (198)
                      ++++|+.|++++|.+++..-.. ..++++|++|++++|++
T Consensus       468 ~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          468 ELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             TCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCC
T ss_pred             cccCCCEEECCCCccccCChhh-hhcccCCCEEeCCCCcC
Confidence            3455555555555444322111 23455555555555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.63  E-value=2.6e-06  Score=70.25  Aligned_cols=84  Identities=11%  Similarity=0.183  Sum_probs=38.4

Q ss_pred             CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790           49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV  128 (198)
Q Consensus        49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~  128 (198)
                      +++|++|+|+++..+..... ...++++|++|++++|.++.-.-. ...++++|++|+|++|+++.-.-..+ ..++.|+
T Consensus       132 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~  208 (270)
T 2o6q_A          132 LTKLTYLSLGYNELQSLPKG-VFDKLTSLKELRLYNNQLKRVPEG-AFDKLTELKTLKLDNNQLKRVPEGAF-DSLEKLK  208 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCC
T ss_pred             CcCCCEEECCCCcCCccCHh-HccCCcccceeEecCCcCcEeChh-HhccCCCcCEEECCCCcCCcCCHHHh-ccccCCC
Confidence            45555555555443211111 113455666666666544332111 12345666666666666442211111 2456666


Q ss_pred             EEEecCC
Q 035790          129 VEVIRSD  135 (198)
Q Consensus       129 ~~~i~~~  135 (198)
                      ...+..+
T Consensus       209 ~L~l~~N  215 (270)
T 2o6q_A          209 MLQLQEN  215 (270)
T ss_dssp             EEECCSS
T ss_pred             EEEecCC
Confidence            5555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.63  E-value=6.8e-06  Score=74.54  Aligned_cols=108  Identities=18%  Similarity=0.183  Sum_probs=63.2

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCCh-HHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSD-MGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD-~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ..+++|++|++++ .+++.....++ .+++|++|+++++..++ ..+.....++++|+.|++++|.+++..-......++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            4567777777744 33543333333 57788888888776643 222223356788888888887665421111234567


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhC-CCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAM-PRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~-p~L~~~~i~~~  135 (198)
                      +|++|++++|+++....    ... +.|+...+..+
T Consensus       429 ~L~~L~l~~n~l~~~~~----~~l~~~L~~L~L~~N  460 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVF----RCLPPKVKVLDLHNN  460 (562)
T ss_dssp             TCCEEECCSSCCCGGGG----SSCCTTCSEEECCSS
T ss_pred             cCCEEECCCCCCCcchh----hhhcCcCCEEECCCC
Confidence            77788887777664221    223 46766666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.63  E-value=3e-06  Score=69.78  Aligned_cols=104  Identities=15%  Similarity=0.162  Sum_probs=70.8

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ...+++|++|++++ .++......++ .+++|++|+++++..+...-.. ..++++|++|++++|.+++..+.....+++
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~  149 (276)
T 2z62_A           72 YQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLT  149 (276)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred             ccCCcCCCEEECCCCccCccChhhhc-CCccccEEECCCCCccccCchh-cccCCCCCEEECcCCccceecCchhhccCC
Confidence            35689999999965 33443333343 5799999999998763322111 346899999999999887644333456799


Q ss_pred             CCcEEEeeceecCH---HHHHHHHHhCCCCc
Q 035790          101 NMRFLWMSSCRLTR---QGCQEIAQAMPRLV  128 (198)
Q Consensus       101 ~L~~L~L~~c~iTd---~gl~~La~~~p~L~  128 (198)
                      +|++|++++|+++.   ..+..+. ..+.|+
T Consensus       150 ~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~l~  179 (276)
T 2z62_A          150 NLEHLDLSSNKIQSIYCTDLRVLH-QMPLLN  179 (276)
T ss_dssp             TCCEEECCSSCCCEECGGGGHHHH-TCTTCC
T ss_pred             CCCEEECCCCCCCcCCHHHhhhhh-hccccc
Confidence            99999999998544   3444443 455554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.62  E-value=1.9e-06  Score=82.31  Aligned_cols=111  Identities=13%  Similarity=-0.000  Sum_probs=68.0

Q ss_pred             hhCCCCceeEecCC-CCHHH-HHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHH-HHhcC
Q 035790           23 RNCRKLTRLAVSGL-LTDRA-FGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRS-GLHHY   99 (198)
Q Consensus        23 ~~c~~L~~L~L~g~-lTD~~-L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~-i~~~~   99 (198)
                      .++++|++|+|++. ..... -..+ ..+++|+.|+|++|..+...-..+ .++++|++|++++|.+++..... ...++
T Consensus        45 ~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           45 PFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILDLGSSKIYFLHPDAF-QGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             SSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEECTTCCCCEECTTSS-CSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             cccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEECCCCcCcccCHhHc-cCCcccCEeeCcCCCCCcccccCcccccc
Confidence            46777888888542 11110 1222 357888888888877643222222 46888888888888776533221 13578


Q ss_pred             CCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          100 YNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       100 ~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      ++|++|+|++|.++..........+++|+...+..+
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            888888888888654332222346788887777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.61  E-value=2.6e-06  Score=68.72  Aligned_cols=110  Identities=14%  Similarity=0.148  Sum_probs=71.2

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      +..+++|++|+|++ .++.-.-..++ .+++|++|+|+++..+...-.. ..++++|++|++++|.++...-.. ...++
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~  129 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSNRLENVQHKM-FKGLESLKTLMLRSNRITCVGNDS-FIGLS  129 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCGGG-GTTCSSCCEEECTTSCCCCBCTTS-STTCT
T ss_pred             hccCCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCCccCccCHhH-hcCCcCCCEEECCCCcCCeECHhH-cCCCc
Confidence            45788999999954 23432212233 5789999999988763222122 256899999999999776432111 35788


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|+|++|.++.-.-..+ ..+++|+...+..+
T Consensus       130 ~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N  163 (220)
T 2v70_A          130 SVRLLSLYDNQITTVAPGAF-DTLHSLSTLNLLAN  163 (220)
T ss_dssp             TCSEEECTTSCCCCBCTTTT-TTCTTCCEEECCSC
T ss_pred             cCCEEECCCCcCCEECHHHh-cCCCCCCEEEecCc
Confidence            99999999998554221222 35788887777765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.61  E-value=2.2e-05  Score=69.57  Aligned_cols=102  Identities=10%  Similarity=0.117  Sum_probs=54.2

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ...+++|++|++++ .+++..  .+ ..+++|+.|++++|..++..  . ...+++|+.|++++|.+++..-   ...++
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~--~~-~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~  331 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNIS--PL-AGLTALTNLELNENQLEDIS--P-ISNLKNLTYLTLYFNNISDISP---VSSLT  331 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCG--GG-TTCTTCSEEECCSSCCSCCG--G-GGGCTTCSEEECCSSCCSCCGG---GGGCT
T ss_pred             hhcCCCCCEEECCCCccCccc--cc-cCCCccCeEEcCCCcccCch--h-hcCCCCCCEEECcCCcCCCchh---hccCc
Confidence            34677777777743 223211  12 24667777777666553211  1 2456667777776666554321   34566


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|++++|++++.  ..+ ..+++|+...+..+
T Consensus       332 ~L~~L~l~~n~l~~~--~~l-~~l~~L~~L~l~~n  363 (466)
T 1o6v_A          332 KLQRLFFYNNKVSDV--SSL-ANLTNINWLSAGHN  363 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGG-TTCTTCCEEECCSS
T ss_pred             cCCEeECCCCccCCc--hhh-ccCCCCCEEeCCCC
Confidence            666666666664432  222 24566665555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.61  E-value=1.8e-05  Score=65.48  Aligned_cols=102  Identities=15%  Similarity=0.182  Sum_probs=46.6

Q ss_pred             hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHH-----------
Q 035790           24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAA-----------   91 (198)
Q Consensus        24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~-----------   91 (198)
                      .+++|++|++++ .+++-  ..+. .+++|++|+++++..++..-   ..++++|+.|++++|.+++-.           
T Consensus        39 ~l~~L~~L~l~~n~i~~l--~~l~-~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~  112 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSL--AGMQ-FFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF  112 (263)
T ss_dssp             HHTTCSEEECTTSCCCCC--TTGG-GCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEE
T ss_pred             hcCcCcEEECcCCCcccc--hHHh-hCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCccccCcccEEE
Confidence            345566666633 12221  1222 35556666665554422111   234555555555555443310           


Q ss_pred             --------HHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790           92 --------LRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        92 --------l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                              +.. ..++++|+.|++++|++++-  .. ...+++|+...+..+
T Consensus       113 L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~--~~-l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A          113 LDNNELRDTDS-LIHLKNLEILSIRNNKLKSI--VM-LGFLSKLEVLDLHGN  160 (263)
T ss_dssp             CCSSCCSBSGG-GTTCTTCCEEECTTSCCCBC--GG-GGGCTTCCEEECTTS
T ss_pred             ccCCccCCChh-hcCcccccEEECCCCcCCCC--hH-HccCCCCCEEECCCC
Confidence                    111 34556666666666664432  11 224566665555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.60  E-value=1.2e-06  Score=77.14  Aligned_cols=63  Identities=19%  Similarity=0.166  Sum_probs=29.0

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPF   87 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~   87 (198)
                      .++++|++|+|++ .+++-....+. .+++|++|+|+++..++-.-. ...++++|++|++++|.+
T Consensus        85 ~~l~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~i  148 (440)
T 3zyj_A           85 KHLRHLEILQLSRNHIRTIEIGAFN-GLANLNTLELFDNRLTTIPNG-AFVYLSKLKELWLRNNPI  148 (440)
T ss_dssp             SSCSSCCEEECCSSCCCEECGGGGT-TCSSCCEEECCSSCCSSCCTT-TSCSCSSCCEEECCSCCC
T ss_pred             hCCCCCCEEECCCCcCCccChhhcc-CCccCCEEECCCCcCCeeCHh-HhhccccCceeeCCCCcc
Confidence            4566677776643 22322212222 356666666666544211111 113455555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.59  E-value=3.6e-06  Score=67.84  Aligned_cols=109  Identities=13%  Similarity=0.132  Sum_probs=62.9

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..+++|++|+|++ .++.-.-..+. .+++|++|+|+++..+.-.- .+..++++|+.|+|++|.++...-. ....+++
T Consensus        53 ~~l~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~  129 (220)
T 2v9t_B           53 SPYKKLRRIDLSNNQISELAPDAFQ-GLRSLNSLVLYGNKITELPK-SLFEGLFSLQLLLLNANKINCLRVD-AFQDLHN  129 (220)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTT-TCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTT
T ss_pred             hCCCCCCEEECCCCcCCCcCHHHhh-CCcCCCEEECCCCcCCccCH-hHccCCCCCCEEECCCCCCCEeCHH-HcCCCCC
Confidence            4567777777744 22322112222 46778888887776631111 1224677888888888866543211 2356788


Q ss_pred             CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |++|+|++|+++.-.-..+ ..+++|+...+..+
T Consensus       130 L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          130 LNLLSLYDNKLQTIAKGTF-SPLRAIQTMHLAQN  162 (220)
T ss_dssp             CCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCEECHHHH-hCCCCCCEEEeCCC
Confidence            8888888887543222222 24677777766654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.59  E-value=2.5e-06  Score=75.50  Aligned_cols=39  Identities=21%  Similarity=0.110  Sum_probs=19.1

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD   62 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~   62 (198)
                      .++++|++|+|++ .++.-.-..+ ..+++|++|+|+++..
T Consensus       120 ~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l  159 (452)
T 3zyi_A          120 NGLASLNTLELFDNWLTVIPSGAF-EYLSKLRELWLRNNPI  159 (452)
T ss_dssp             TTCTTCCEEECCSSCCSBCCTTTS-SSCTTCCEEECCSCCC
T ss_pred             cCcccCCEEECCCCcCCccChhhh-cccCCCCEEECCCCCc
Confidence            4566777777743 2221111111 2456666666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.59  E-value=2e-06  Score=75.86  Aligned_cols=39  Identities=18%  Similarity=0.083  Sum_probs=19.9

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD   62 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~   62 (198)
                      .++++|++|+|++ .++.-.-..+ ..+++|++|+|+++..
T Consensus       109 ~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~i  148 (440)
T 3zyj_A          109 NGLANLNTLELFDNRLTTIPNGAF-VYLSKLKELWLRNNPI  148 (440)
T ss_dssp             TTCSSCCEEECCSSCCSSCCTTTS-CSCSSCCEEECCSCCC
T ss_pred             cCCccCCEEECCCCcCCeeCHhHh-hccccCceeeCCCCcc
Confidence            4567777777743 2222111112 2456666666666554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.59  E-value=4.2e-07  Score=77.02  Aligned_cols=88  Identities=14%  Similarity=0.085  Sum_probs=44.0

Q ss_pred             hhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           23 RNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        23 ~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ..+++|++|++++  .+++..-..++ .+++|++|+|+++..+...-..+ .++++|++|++++|.++...- ....+++
T Consensus        73 ~~l~~L~~L~L~~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~  149 (313)
T 1ogq_A           73 ANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLP-PSISSLP  149 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECCGGG-GGCTTCCEEECCSSEEESCCC-GGGGGCT
T ss_pred             hCCCCCCeeeCCCCCcccccCChhHh-cCCCCCEEECcCCeeCCcCCHHH-hCCCCCCEEeCCCCccCCcCC-hHHhcCC
Confidence            4566666666642  22222222233 45666777666665531111112 346666666666665442111 1124566


Q ss_pred             CCcEEEeeceecC
Q 035790          101 NMRFLWMSSCRLT  113 (198)
Q Consensus       101 ~L~~L~L~~c~iT  113 (198)
                      +|++|++++|+++
T Consensus       150 ~L~~L~L~~N~l~  162 (313)
T 1ogq_A          150 NLVGITFDGNRIS  162 (313)
T ss_dssp             TCCEEECCSSCCE
T ss_pred             CCCeEECcCCccc
Confidence            6666666666644

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.58  E-value=2.7e-06  Score=69.40  Aligned_cols=85  Identities=12%  Similarity=0.107  Sum_probs=43.4

Q ss_pred             cCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCC
Q 035790           48 YGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRL  127 (198)
Q Consensus        48 ~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L  127 (198)
                      .+++|++|+|+++..+.-.- .+..++++|++|++++|.++.-.-. ...++++|++|+|++|+++...-..+ ..+++|
T Consensus       105 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L  181 (251)
T 3m19_A          105 HLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAG-AFDKLTNLQTLSLSTNQLQSVPHGAF-DRLGKL  181 (251)
T ss_dssp             TCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTC
T ss_pred             ccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccCHH-HcCcCcCCCEEECCCCcCCccCHHHH-hCCCCC
Confidence            34566666666554421111 1123467777777777765432211 13456677777777776442211112 245666


Q ss_pred             cEEEecCC
Q 035790          128 VVEVIRSD  135 (198)
Q Consensus       128 ~~~~i~~~  135 (198)
                      +...+..+
T Consensus       182 ~~L~l~~N  189 (251)
T 3m19_A          182 QTITLFGN  189 (251)
T ss_dssp             CEEECCSC
T ss_pred             CEEEeeCC
Confidence            66666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.58  E-value=3.1e-06  Score=76.27  Aligned_cols=110  Identities=15%  Similarity=0.079  Sum_probs=53.2

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      .++++|++|+|++ .++.-.-..+ ..+++|++|+|+++..+.-.-. ...++++|++|++++|.++.-.- ....++++
T Consensus        73 ~~l~~L~~L~Ls~N~i~~i~~~~f-~~L~~L~~L~Ls~N~l~~l~~~-~f~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~  149 (635)
T 4g8a_A           73 FSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETNLASLEN-FPIGHLKT  149 (635)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCCEECGG-GGTTCTTCCEEECTTSCCCCSTT-CCCTTCTT
T ss_pred             hCCCCCCEEECCCCcCCCcChhHh-cCCCCCCEEEccCCcCCCCCHH-HhcCCCCCCEEECCCCcCCCCCh-hhhhcCcc
Confidence            4566777777743 1221000111 2456777777766654221111 12456667777776665543110 01245666


Q ss_pred             CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |++|++++|.++..........++.|+...+..+
T Consensus       150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             cCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            7777777666433222122234566665555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.58  E-value=3.2e-06  Score=68.45  Aligned_cols=108  Identities=12%  Similarity=0.103  Sum_probs=57.7

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..+++|++|+|++ .++.-.-. +...+++|+.|+|+++..+.-.- .+..++++|+.|++++|.++.  +.....++++
T Consensus        61 ~~l~~L~~L~L~~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~  136 (229)
T 3e6j_A           61 DSLINLKELYLGSNQLGALPVG-VFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKLTE--LPRGIERLTH  136 (229)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCS--CCTTGGGCTT
T ss_pred             hCccCCcEEECCCCCCCCcChh-hcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCcccc--cCcccccCCC
Confidence            4566777777743 12211111 11246777777777765532111 112356777777777776552  2122356777


Q ss_pred             CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |++|+|++|+++.-.- .....+++|+...+..+
T Consensus       137 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          137 LTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred             CCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCC
Confidence            8888888777542211 11235677776666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.56  E-value=1.3e-05  Score=73.87  Aligned_cols=100  Identities=19%  Similarity=0.244  Sum_probs=58.1

Q ss_pred             CCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEE
Q 035790           27 KLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFL  105 (198)
Q Consensus        27 ~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L  105 (198)
                      .|+.|+|++ .++.  +..++ .+++|+.|+|+++..+  .+.....++++|+.|+|++|.++.  +. ...++++|++|
T Consensus       442 ~L~~L~Ls~n~l~~--lp~~~-~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L  513 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCHLE-QLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQEL  513 (567)
T ss_dssp             TCSEEECTTSCCSS--CCCGG-GGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEE
T ss_pred             CceEEEecCCCCCC--CcCcc-ccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEE
Confidence            577777744 2232  22233 4677777777777653  111122457777777777776664  32 24567777777


Q ss_pred             EeeceecCHHH-HHHHHHhCCCCcEEEecCC
Q 035790          106 WMSSCRLTRQG-CQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       106 ~L~~c~iTd~g-l~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|+++... -..+ ..+++|+...+..+
T Consensus       514 ~Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~N  543 (567)
T 1dce_A          514 LLCNNRLQQSAAIQPL-VSCPRLVLLNLQGN  543 (567)
T ss_dssp             ECCSSCCCSSSTTGGG-GGCTTCCEEECTTS
T ss_pred             ECCCCCCCCCCCcHHH-hcCCCCCEEEecCC
Confidence            77777755432 1222 35677777666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.54  E-value=3.7e-06  Score=71.02  Aligned_cols=106  Identities=10%  Similarity=0.090  Sum_probs=64.5

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..+++|++|++++ .+++.....+...+++|++|++++|..++.  ... ..+++|++|++++|.+++-.-  ....+++
T Consensus       141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~-~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~  215 (317)
T 3o53_A          141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ-VVFAKLKTLDLSSNKLAFMGP--EFQSAAG  215 (317)
T ss_dssp             GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECC-CCCTTCCEEECCSSCCCEECG--GGGGGTT
T ss_pred             hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccc-cccccCCEEECCCCcCCcchh--hhcccCc
Confidence            3467777777744 335544445555567788888877766322  111 137788888888887654221  1456788


Q ss_pred             CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |++|++++|+++.  +......+++|+...+..+
T Consensus       216 L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          216 VTWISLRNNKLVL--IEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             CSEEECTTSCCCE--ECTTCCCCTTCCEEECTTC
T ss_pred             ccEEECcCCcccc--hhhHhhcCCCCCEEEccCC
Confidence            8888888887552  2112235677777777665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.54  E-value=4.7e-06  Score=75.07  Aligned_cols=83  Identities=8%  Similarity=-0.006  Sum_probs=41.0

Q ss_pred             CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790           49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV  128 (198)
Q Consensus        49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~  128 (198)
                      +++|++|+|++|..++..-..+ .++++|+.|++++|.+++.....+...+++|++|+|++|.++..  .... .++.|+
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~-~l~~L~  194 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQV-VFAKLK  194 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCC-CCTTCC
T ss_pred             cCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccc-cCCCCC
Confidence            4566666666665532211112 23566666666666655543333334556666666666654322  1111 245555


Q ss_pred             EEEecCC
Q 035790          129 VEVIRSD  135 (198)
Q Consensus       129 ~~~i~~~  135 (198)
                      ...+..+
T Consensus       195 ~L~Ls~N  201 (487)
T 3oja_A          195 TLDLSSN  201 (487)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            5555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.52  E-value=2.4e-05  Score=69.81  Aligned_cols=66  Identities=14%  Similarity=0.035  Sum_probs=33.1

Q ss_pred             hhCCCCceeEecC-CCCH-HHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCC
Q 035790           23 RNCRKLTRLAVSG-LLTD-RAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFG   88 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD-~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~t   88 (198)
                      ..+++|++|++++ .+++ ..+......+++|++|++++|..++..-.....++++|+.|++++|.++
T Consensus       345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~  412 (520)
T 2z7x_B          345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT  412 (520)
T ss_dssp             CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred             ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence            4567777777744 3343 1222222356777777777766532100011233455555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.49  E-value=1.5e-05  Score=73.60  Aligned_cols=105  Identities=17%  Similarity=0.200  Sum_probs=67.3

Q ss_pred             HHhhCCCCceeE-ecC---------CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChH
Q 035790           21 IVRNCRKLTRLA-VSG---------LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDA   90 (198)
Q Consensus        21 i~~~c~~L~~L~-L~g---------~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~   90 (198)
                      .+..+++|+.|+ ++.         .+++..+..+..  .+|+.|+|+++..+.  +.. ..++++|+.|++++|.++  
T Consensus       404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~--  476 (567)
T 1dce_A          404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY--ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR--  476 (567)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH--TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC--
T ss_pred             HHHHHHhcccCcchhhcccchhhhhhhhcccccccCc--cCceEEEecCCCCCC--CcC-ccccccCcEeecCccccc--
Confidence            345667777777 321         123344555442  468888888887643  223 356888899999888776  


Q ss_pred             HHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790           91 ALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        91 ~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      .+-....++++|++|+|++|+++.  +..+ ..+++|+...+..+
T Consensus       477 ~lp~~~~~l~~L~~L~Ls~N~l~~--lp~l-~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          477 ALPPALAALRCLEVLQASDNALEN--VDGV-ANLPRLQELLLCNN  518 (567)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCC--CGGG-TTCSSCCEEECCSS
T ss_pred             ccchhhhcCCCCCEEECCCCCCCC--Cccc-CCCCCCcEEECCCC
Confidence            222234678889999998888664  3323 35788888777765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.49  E-value=4e-06  Score=74.16  Aligned_cols=105  Identities=11%  Similarity=0.090  Sum_probs=57.5

Q ss_pred             CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF  104 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~  104 (198)
                      ++|++|+|++ .++...-..++ .+++|+.|+|+++..++.....+ .++++|++|+|++|.++.-.- ....++++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAF-NGLASLNTLELFDNWLTVIPS-GAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCSBCCT-TTSSSCTTCCE
T ss_pred             CCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhc-cCcccCCEEECCCCcCCccCh-hhhcccCCCCE
Confidence            4677777743 22332222233 56778888887776543222222 457778888887776553221 11345777777


Q ss_pred             EEeeceecCHHHHHHHHHhCCCCcEEEecC
Q 035790          105 LWMSSCRLTRQGCQEIAQAMPRLVVEVIRS  134 (198)
Q Consensus       105 L~L~~c~iTd~gl~~La~~~p~L~~~~i~~  134 (198)
                      |+|++|+++.-.-.. ...+++|+...+..
T Consensus       152 L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~  180 (452)
T 3zyi_A          152 LWLRNNPIESIPSYA-FNRVPSLMRLDLGE  180 (452)
T ss_dssp             EECCSCCCCEECTTT-TTTCTTCCEEECCC
T ss_pred             EECCCCCcceeCHhH-HhcCCcccEEeCCC
Confidence            777777744211111 12466666666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.49  E-value=3e-06  Score=71.18  Aligned_cols=84  Identities=14%  Similarity=0.170  Sum_probs=38.2

Q ss_pred             cCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCC
Q 035790           48 YGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRL  127 (198)
Q Consensus        48 ~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L  127 (198)
                      .+++|++|+++++..+.  +.....++++|+.|++++|.++.-.- ....++++|++|+|++|+++.-... +...+++|
T Consensus        75 ~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L  150 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPG-LLTPTPKL  150 (290)
T ss_dssp             CCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTC
T ss_pred             CCCcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCCccChh-hcccccCC
Confidence            45555555555554421  11112345566666666665442211 1123456666666666654321100 11234555


Q ss_pred             cEEEecCC
Q 035790          128 VVEVIRSD  135 (198)
Q Consensus       128 ~~~~i~~~  135 (198)
                      +...+..+
T Consensus       151 ~~L~L~~N  158 (290)
T 1p9a_G          151 EKLSLANN  158 (290)
T ss_dssp             CEEECTTS
T ss_pred             CEEECCCC
Confidence            55555543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.45  E-value=0.00012  Score=62.35  Aligned_cols=61  Identities=16%  Similarity=0.131  Sum_probs=33.7

Q ss_pred             CCCCceEEecCCCCChHHHHHH---HhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790           74 CPKLQKLEIRDSPFGDAALRSG---LHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        74 C~~L~~L~L~~c~~tD~~l~~i---~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      ++.|+.++++++.+++.++..+   ..++++|++|++++|+++.-.- .+...+++|+...+..+
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH-HHHhcCCCCCEEEeeCC
Confidence            4444444444444555544433   3567778888888877552111 11235677777766655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.44  E-value=2.3e-05  Score=72.20  Aligned_cols=106  Identities=13%  Similarity=0.151  Sum_probs=48.3

Q ss_pred             CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF  104 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~  104 (198)
                      ++|++|++++ .++.-.-..++ .+++|++|+++++..++..-..+ .++++|+.|++++|.++.-.-. ...++++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~  101 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGFNTISKLEPELC-QKLPMLKVLNLQHNELSQLSDK-TFAFCTNLTE  101 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGG-GGTTCSEEECCSSCCCCCCTTHH-HHCTTCCEEECCSSCCCCCCTT-TTTTCTTCSE
T ss_pred             CCCcEEECCCCCCCCcCHHHHh-CCCcCcEEECCCCccCccCHHHH-hcccCcCEEECCCCccCccChh-hhccCCCCCE
Confidence            4566666643 12221111222 35666666666655432221222 2366666666666654422111 1235666666


Q ss_pred             EEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          105 LWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       105 L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |++++|.++.-.-..+ ..+++|+...+..+
T Consensus       102 L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n  131 (680)
T 1ziw_A          102 LHLMSNSIQKIKNNPF-VKQKNLITLDLSHN  131 (680)
T ss_dssp             EECCSSCCCCCCSCTT-TTCTTCCEEECCSS
T ss_pred             EECCCCccCccChhHc-cccCCCCEEECCCC
Confidence            6666665332111111 24555655555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.43  E-value=1.3e-05  Score=69.16  Aligned_cols=105  Identities=10%  Similarity=0.074  Sum_probs=74.4

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      +..+++|++|++++ .+++.....++ .+++|+.|+++++..++-  ......+++|++|++++|.++.-.  .....++
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~l~  318 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFD  318 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSCCCCCG--GGHHHHT
T ss_pred             HcCCCCccEEECCCCcCCCcChhHcc-ccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCCcceecC--ccccccC
Confidence            46799999999965 33543333344 579999999999877431  112256899999999999776321  1134678


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|++++|+++...    ...++.|+...+..+
T Consensus       319 ~L~~L~L~~N~i~~~~----~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          319 RLENLYLDHNSIVTLK----LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             TCSEEECCSSCCCCCC----CCTTCCCSEEECCSS
T ss_pred             cCCEEECCCCccceeC----chhhccCCEEEcCCC
Confidence            9999999999966543    346788888888775

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=1.8e-05  Score=76.75  Aligned_cols=106  Identities=11%  Similarity=0.083  Sum_probs=62.6

Q ss_pred             hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccC-CCh----HHHHHHH---hcCCCCceEEecCCCCChHHHHH
Q 035790           24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAG-DSD----MGLKYVL---EGCPKLQKLEIRDSPFGDAALRS   94 (198)
Q Consensus        24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~-~tD----~gl~~i~---~~C~~L~~L~L~~c~~tD~~l~~   94 (198)
                      ++++|++|+|++ .++...-..++ .+++|+.|+|+++. .+.    .++..+.   ..+++|+.|++++|.++  .+..
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~  565 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPA  565 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCC
T ss_pred             cCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCC
Confidence            678888888843 11222223343 57788888888876 454    2333332   34568888888888666  2222


Q ss_pred             --HHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790           95 --GLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        95 --i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                        ...++++|+.|+|++|+++  .+.. ...+++|+...+..+
T Consensus       566 ~~~l~~L~~L~~L~Ls~N~l~--~lp~-~~~L~~L~~L~Ls~N  605 (876)
T 4ecn_A          566 SASLQKMVKLGLLDCVHNKVR--HLEA-FGTNVKLTDLKLDYN  605 (876)
T ss_dssp             HHHHTTCTTCCEEECTTSCCC--BCCC-CCTTSEESEEECCSS
T ss_pred             hhhhhcCCCCCEEECCCCCcc--cchh-hcCCCcceEEECcCC
Confidence              3456778888888887755  2222 234566666666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.42  E-value=1.6e-05  Score=73.84  Aligned_cols=158  Identities=13%  Similarity=0.091  Sum_probs=87.5

Q ss_pred             hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChH--H-HHHH---HhcCCCCceEEecCCCCChHHHHHHH
Q 035790           24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDM--G-LKYV---LEGCPKLQKLEIRDSPFGDAALRSGL   96 (198)
Q Consensus        24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~--g-l~~i---~~~C~~L~~L~L~~c~~tD~~l~~i~   96 (198)
                      .+++|++|++++ .++ ..-..+...+++|+.|+|+++..+.-  + +...   .++|++|++|++++|.++.  +....
T Consensus       431 ~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~  507 (636)
T 4eco_A          431 KGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK--LSDDF  507 (636)
T ss_dssp             CCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB--CCGGG
T ss_pred             cCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc--cChhh
Confidence            456888888854 334 12223444678888888888766411  0 0000   1123388888888887762  22223


Q ss_pred             --hcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC-----C--CchhHhHHHHHhHhhhc--cCCC-CCCCCcc
Q 035790           97 --HHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD-----D--EEETDNYVETLYMYRSL--EGPR-HDAPKFV  164 (198)
Q Consensus        97 --~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~-----~--~~~~~~~~~~~~~y~sl--~g~r-~d~p~~v  164 (198)
                        .++++|++|+|++|+++.  +..-...++.|+...+..+     +  ...-...+.++...+.|  ++-+ ...|.. 
T Consensus       508 ~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~-  584 (636)
T 4eco_A          508 RATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK-  584 (636)
T ss_dssp             STTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-
T ss_pred             hhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh-
Confidence              378888888888888664  3222235788887777432     0  01111223333333332  1111 233433 


Q ss_pred             eeecccCCcccccccccC-----CChhhhhhhc
Q 035790          165 TILRIIKPKLMLVQIKFA-----EPSDVCQKWG  192 (198)
Q Consensus       165 ~~l~~~~~~~~~l~~~~~-----~~~~~~~~~~  192 (198)
                           ...+|..|++++-     .++++|..+-
T Consensus       585 -----~~~~L~~L~Ls~N~l~~~~~~~~~~~~~  612 (636)
T 4eco_A          585 -----ITPNISVLDIKDNPNISIDLSYVCPYIE  612 (636)
T ss_dssp             -----CCTTCCEEECCSCTTCEEECTTTHHHHH
T ss_pred             -----HhCcCCEEECcCCCCccccHHhcchhhh
Confidence                 2268888888886     6677776553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.42  E-value=0.00013  Score=61.47  Aligned_cols=88  Identities=17%  Similarity=0.138  Sum_probs=62.3

Q ss_pred             HHHHhhCCCCceeEecC-CCCH-HHHHHHHhcCCCCcEEEeeccCCChH-HHHHHHhcCCCCceEEecCCCCCh-----H
Q 035790           19 GAIVRNCRKLTRLAVSG-LLTD-RAFGYIGKYGKLIRTLSVAFAGDSDM-GLKYVLEGCPKLQKLEIRDSPFGD-----A   90 (198)
Q Consensus        19 ~ai~~~c~~L~~L~L~g-~lTD-~~L~~I~~~~~~L~~L~L~~c~~tD~-gl~~i~~~C~~L~~L~L~~c~~tD-----~   90 (198)
                      ..+...+++|+.|+|+. .+++ ..+..+...+++|+.|+|+++..++. .+..+ +++ +|++|+|++|+++.     .
T Consensus       163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl~~~~~~~~  240 (267)
T 3rw6_A          163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSLCDTFRDQS  240 (267)
T ss_dssp             HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTTGGGCSSHH
T ss_pred             HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcCccccCcch
Confidence            33446799999999965 3343 23444445799999999999988443 44443 334 99999999998874     2


Q ss_pred             H-HHHHHhcCCCCcEEEee
Q 035790           91 A-LRSGLHHYYNMRFLWMS  108 (198)
Q Consensus        91 ~-l~~i~~~~~~L~~L~L~  108 (198)
                      . ...+...+|+|+.||=.
T Consensus       241 ~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          241 TYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHHHHHCTTCCEESSC
T ss_pred             hHHHHHHHHCcccCeECCc
Confidence            2 33567889999999743

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.40  E-value=1.1e-05  Score=65.22  Aligned_cols=105  Identities=11%  Similarity=0.117  Sum_probs=71.0

Q ss_pred             CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF  104 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~  104 (198)
                      ++|++|+|++ .++...-..+. .+++|+.|+|+++..+.-.. .+..++++|+.|+|++|.++.-. ......+++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~  116 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFD-SLINLKELYLGSNQLGALPV-GVFDSLTQLTVLDLGTNQLTVLP-SAVFDRLVHLKE  116 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred             CCCCEEEcCCCccCccCHHHhh-CccCCcEEECCCCCCCCcCh-hhcccCCCcCEEECCCCcCCccC-hhHhCcchhhCe
Confidence            7899999954 23332112233 57899999999987732111 12356899999999999876432 122357899999


Q ss_pred             EEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          105 LWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       105 L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |+|++|+++.  +..-...+++|+...+..+
T Consensus       117 L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A          117 LFMCCNKLTE--LPRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             EECCSSCCCS--CCTTGGGCTTCSEEECCSS
T ss_pred             EeccCCcccc--cCcccccCCCCCEEECCCC
Confidence            9999999662  2111257889988888765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.38  E-value=2.6e-05  Score=65.74  Aligned_cols=12  Identities=42%  Similarity=0.351  Sum_probs=7.3

Q ss_pred             hhCCCCceeEec
Q 035790           23 RNCRKLTRLAVS   34 (198)
Q Consensus        23 ~~c~~L~~L~L~   34 (198)
                      ..+++|++|+++
T Consensus        97 ~~l~~L~~L~Ls  108 (330)
T 1xku_A           97 APLVKLERLYLS  108 (330)
T ss_dssp             TTCTTCCEEECC
T ss_pred             cCCCCCCEEECC
Confidence            346666666663

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.36  E-value=4.5e-05  Score=70.68  Aligned_cols=111  Identities=12%  Similarity=0.090  Sum_probs=69.5

Q ss_pred             HhhCCCCceeEecC-CCCHH-----------------HHHHHH-hcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEe
Q 035790           22 VRNCRKLTRLAVSG-LLTDR-----------------AFGYIG-KYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEI   82 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~-----------------~L~~I~-~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L   82 (198)
                      +..+++|++|+|++ .++..                 .-..|+ ..+++|++|+|++|..+..--.. ..++++|+.|++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L  280 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINV  280 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEEC
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEEC
Confidence            45788999999954 33542                 112222 25789999999988652211122 246889999999


Q ss_pred             cCCC-CChHHHHHHH------hcCCCCcEEEeeceecCHHHHHH--HHHhCCCCcEEEecCC
Q 035790           83 RDSP-FGDAALRSGL------HHYYNMRFLWMSSCRLTRQGCQE--IAQAMPRLVVEVIRSD  135 (198)
Q Consensus        83 ~~c~-~tD~~l~~i~------~~~~~L~~L~L~~c~iTd~gl~~--La~~~p~L~~~~i~~~  135 (198)
                      ++|. ++...+-...      ..+++|++|++++|+++  .+..  ....+++|+...+..+
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N  340 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYN  340 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSC
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCC
Confidence            9987 8872222222      23588889999888866  2322  3346777777666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.36  E-value=1.9e-05  Score=66.53  Aligned_cols=106  Identities=13%  Similarity=0.135  Sum_probs=73.5

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      +.++++|++|++++ .++.-.    ....++|++|+++++..++.....+ .++++|++|++++|.+++..... ...++
T Consensus       167 ~~~l~~L~~L~l~~n~l~~l~----~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~  240 (330)
T 1xku_A          167 FQGMKKLSYIRIADTNITTIP----QGLPPSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGS-LANTP  240 (330)
T ss_dssp             GGGCTTCCEEECCSSCCCSCC----SSCCTTCSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSCCCEECTTT-GGGST
T ss_pred             ccCCCCcCEEECCCCccccCC----ccccccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCceeChhh-ccCCC
Confidence            46789999999954 223210    0123799999999988754433333 46899999999999887643222 45789


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|++++|+++.  +..-...+++|+...+..+
T Consensus       241 ~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          241 HLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             TCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSS
T ss_pred             CCCEEECCCCcCcc--CChhhccCCCcCEEECCCC
Confidence            99999999999662  2111246788988888765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.35  E-value=7.9e-06  Score=75.37  Aligned_cols=61  Identities=16%  Similarity=0.169  Sum_probs=26.3

Q ss_pred             cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHH-HhCCCCcEEEecC
Q 035790           73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIA-QAMPRLVVEVIRS  134 (198)
Q Consensus        73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La-~~~p~L~~~~i~~  134 (198)
                      ++++|++|++++|.++...... ..++++|++|++++|.++...-..+. ..++.|+...+..
T Consensus       119 ~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          119 KQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             TCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             ccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence            3455555555555443321111 23455666666666553322112221 1245555555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.35  E-value=0.00013  Score=62.10  Aligned_cols=88  Identities=11%  Similarity=-0.015  Sum_probs=43.2

Q ss_pred             hhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           23 RNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        23 ~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ..+++|++|++++  .++...-..++ .+++|++|+++++..++.....+ .++++|++|++++|.++.-.- .....++
T Consensus       146 ~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~-~~~~~~~  222 (353)
T 2z80_A          146 SHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQSYEPKSL-KSIQNVSHLILHMKQHILLLE-IFVDVTS  222 (353)
T ss_dssp             TTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECSCSTTHHH-HHHHHTT
T ss_pred             ccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCCcCccCHHHH-hccccCCeecCCCCccccchh-hhhhhcc
Confidence            4567777777743  22322112222 35666666666665432211122 335566666666665543331 2233455


Q ss_pred             CCcEEEeeceecC
Q 035790          101 NMRFLWMSSCRLT  113 (198)
Q Consensus       101 ~L~~L~L~~c~iT  113 (198)
                      +|++|++++|.++
T Consensus       223 ~L~~L~L~~n~l~  235 (353)
T 2z80_A          223 SVECLELRDTDLD  235 (353)
T ss_dssp             TEEEEEEESCBCT
T ss_pred             cccEEECCCCccc
Confidence            5666655555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.35  E-value=1.1e-05  Score=74.01  Aligned_cols=105  Identities=10%  Similarity=0.084  Sum_probs=60.8

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      +..+++|++|+|++ .+++.....++ .+++|+.|+|++|..+.  +......+++|+.|+|++|.++.  +......++
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~  324 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFD  324 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCC--CGGGHHHHT
T ss_pred             hccCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCc--cCcccccCC
Confidence            34577777777744 23433223333 46777777777766533  11122446778888887776652  111124567


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|+|++|.++...    ...+|.|+...+..+
T Consensus       325 ~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~N  355 (597)
T 3oja_B          325 RLENLYLDHNSIVTLK----LSTHHTLKNLTLSHN  355 (597)
T ss_dssp             TCSEEECCSSCCCCCC----CCTTCCCSEEECCSS
T ss_pred             CCCEEECCCCCCCCcC----hhhcCCCCEEEeeCC
Confidence            7788888777754332    235677777776655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.30  E-value=2.6e-05  Score=61.54  Aligned_cols=89  Identities=12%  Similarity=0.197  Sum_probs=61.9

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ...+++|++|++++ .++.-.-..+ ..+++|++|+++++..+...-. ...++++|+.|++++|.+++-.- ....+++
T Consensus        72 ~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~  148 (208)
T 2o6s_A           72 FNKLTSLTYLNLSTNQLQSLPNGVF-DKLTQLKELALNTNQLQSLPDG-VFDKLTQLKDLRLYQNQLKSVPD-GVFDRLT  148 (208)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCT-TTTTTCT
T ss_pred             cCCCCCcCEEECCCCcCCccCHhHh-cCccCCCEEEcCCCcCcccCHh-HhccCCcCCEEECCCCccceeCH-HHhccCC
Confidence            35789999999954 2342111112 3689999999999876421111 23568999999999998764321 2246789


Q ss_pred             CCcEEEeeceecC
Q 035790          101 NMRFLWMSSCRLT  113 (198)
Q Consensus       101 ~L~~L~L~~c~iT  113 (198)
                      +|++|+|++|.++
T Consensus       149 ~L~~L~l~~N~~~  161 (208)
T 2o6s_A          149 SLQYIWLHDNPWD  161 (208)
T ss_dssp             TCCEEECCSCCBC
T ss_pred             CccEEEecCCCee
Confidence            9999999999854

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.27  E-value=9.8e-06  Score=65.27  Aligned_cols=106  Identities=11%  Similarity=0.186  Sum_probs=71.0

Q ss_pred             CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF  104 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~  104 (198)
                      ++|++|++++ .++.-.-..+ ..+++|+.|+|+++..+...-..+ .++++|+.|+|++|.++.-. ..+...+++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKITELP-KSLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEECCCCcCCccC-HhHccCCCCCCE
Confidence            5899999954 2332211122 357899999999988743222222 56899999999999876322 122357899999


Q ss_pred             EEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          105 LWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       105 L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |+|++|+++.-.-..+ ..+++|+...+..+
T Consensus       109 L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N  138 (220)
T 2v9t_B          109 LLLNANKINCLRVDAF-QDLHNLNLLSLYDN  138 (220)
T ss_dssp             EECCSSCCCCCCTTTT-TTCTTCCEEECCSS
T ss_pred             EECCCCCCCEeCHHHc-CCCCCCCEEECCCC
Confidence            9999998654322222 25788988888765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.27  E-value=1.2e-05  Score=69.23  Aligned_cols=14  Identities=21%  Similarity=0.200  Sum_probs=6.8

Q ss_pred             cCCCCcEEEeecee
Q 035790           98 HYYNMRFLWMSSCR  111 (198)
Q Consensus        98 ~~~~L~~L~L~~c~  111 (198)
                      .+++|+.|+|++|+
T Consensus       161 ~l~~L~~L~L~~N~  174 (361)
T 2xot_A          161 KLPKLMLLDLSSNK  174 (361)
T ss_dssp             -CTTCCEEECCSSC
T ss_pred             cCCcCCEEECCCCC
Confidence            34555555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.25  E-value=3.1e-06  Score=71.58  Aligned_cols=64  Identities=11%  Similarity=-0.048  Sum_probs=30.8

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCC-CCceEEecCCCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCP-KLQKLEIRDSPFG   88 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~-~L~~L~L~~c~~t   88 (198)
                      ..+++|++|++++ .++...-..++ .+++|++|+++++..+...-..+ ..++ +|+.|++++|.++
T Consensus       122 ~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          122 SQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEE
T ss_pred             hCCCCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeee
Confidence            4567777777743 11211112232 45677777776665432111122 2343 5666666665443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.25  E-value=1.3e-05  Score=76.46  Aligned_cols=91  Identities=18%  Similarity=0.115  Sum_probs=63.5

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHH-HHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKY-VLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~-i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      .++++|++|+|++ .++...-..++ .+++|++|+|++|..++..... ...++++|++|++++|.++.........+++
T Consensus        70 ~~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~  148 (844)
T 3j0a_A           70 RNLPNLRILDLGSSKIYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN  148 (844)
T ss_dssp             SSCTTCCEEECTTCCCCEECTTSSC-SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred             cCCCCCCEEECCCCcCcccCHhHcc-CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence            6789999999954 33433223343 6889999999998775432221 1356899999999999876644333356899


Q ss_pred             CCcEEEeeceecCH
Q 035790          101 NMRFLWMSSCRLTR  114 (198)
Q Consensus       101 ~L~~L~L~~c~iTd  114 (198)
                      +|++|+|++|.++.
T Consensus       149 ~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A          149 SLKSIDFSSNQIFL  162 (844)
T ss_dssp             SCCEEEEESSCCCC
T ss_pred             CCCEEECCCCcCCe
Confidence            99999999987544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.24  E-value=3.7e-05  Score=74.62  Aligned_cols=111  Identities=14%  Similarity=0.073  Sum_probs=76.3

Q ss_pred             HhhCCCCceeEecC-CCCHH-----------------HHHHHH-hcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEe
Q 035790           22 VRNCRKLTRLAVSG-LLTDR-----------------AFGYIG-KYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEI   82 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~-----------------~L~~I~-~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L   82 (198)
                      +.++++|+.|+|++ .++.+                 .-..++ ..+++|+.|+|++|..+..--.. ..++++|+.|+|
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~L  522 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNI  522 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEEC
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEEC
Confidence            46789999999954 34552                 112221 25899999999998752211122 356999999999


Q ss_pred             cCCC-CCh----HHHHHHH---hcCCCCcEEEeeceecCHHHHHH--HHHhCCCCcEEEecCC
Q 035790           83 RDSP-FGD----AALRSGL---HHYYNMRFLWMSSCRLTRQGCQE--IAQAMPRLVVEVIRSD  135 (198)
Q Consensus        83 ~~c~-~tD----~~l~~i~---~~~~~L~~L~L~~c~iTd~gl~~--La~~~p~L~~~~i~~~  135 (198)
                      ++|. ++.    .++..+.   ..+++|++|+|++|.++  .+..  ....+++|+...+..+
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N  583 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHN  583 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTS
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCC
Confidence            9997 887    2233222   45679999999999976  3333  3447899998888765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.23  E-value=2.7e-05  Score=59.96  Aligned_cols=106  Identities=14%  Similarity=0.113  Sum_probs=68.3

Q ss_pred             CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF  104 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~  104 (198)
                      ++|++|++++ .++...-..+ ..+++|++|+++++..+.-.- ....++++|+.|++++|.++.-.- .....+++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~  104 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENKLQSLPN-GVFDKLTQLKE  104 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred             CCCcEEEeCCCcccEeCHHHh-cCcccccEEECCCCcceEeCh-hHccCCCccCEEECCCCCccccCH-HHhhCCcccCE
Confidence            6899999954 2332111112 357899999999887642111 122468999999999997763221 12357889999


Q ss_pred             EEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          105 LWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       105 L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |++++|.++.-.- .+...+++|+...+..+
T Consensus       105 L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A          105 LALDTNQLKSVPD-GIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             EECCSSCCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred             EECcCCcceEeCH-HHhcCCcccCEEEecCC
Confidence            9999998652211 12245788888877765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.23  E-value=1.8e-05  Score=62.27  Aligned_cols=107  Identities=10%  Similarity=0.059  Sum_probs=69.9

Q ss_pred             CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF  104 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~  104 (198)
                      ++|++|++++ .++...-..+....++|+.|+|+++..+...-.. ..++++|++|++++|.++...-.. ..++++|++
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~  106 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENKIKEISNKM-FLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSCCCCEECSSS-STTCTTCCE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH-cCCcccCCEEECCCCcCCccCHHH-hcCCCCCCE
Confidence            3899999954 2232211111236899999999998774321122 246899999999999876533221 357899999


Q ss_pred             EEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          105 LWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       105 L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |+|++|+++...-..+ ..+++|+...+..+
T Consensus       107 L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          107 LNLYDNQISCVMPGSF-EHLNSLTSLNLASN  136 (192)
T ss_dssp             EECCSSCCCEECTTSS-TTCTTCCEEECTTC
T ss_pred             EECCCCcCCeeCHHHh-hcCCCCCEEEeCCC
Confidence            9999998654211122 35788888888765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.22  E-value=2.7e-05  Score=70.08  Aligned_cols=98  Identities=13%  Similarity=0.119  Sum_probs=67.3

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ..++++|++|+|++ .++.-.-..+ ..+++|++|+|++|..+.-.-.. ..++++|++|++++|.++...+.....+++
T Consensus        96 f~~L~~L~~L~Ls~N~l~~l~~~~f-~~L~~L~~L~Ls~N~l~~l~~~~-~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~  173 (635)
T 4g8a_A           96 YQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLT  173 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCEECGGGG-TTCTTCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred             hcCCCCCCEEEccCCcCCCCCHHHh-cCCCCCCEEECCCCcCCCCChhh-hhcCcccCeeccccCccccCCCchhhccch
Confidence            36789999999965 3343211222 36899999999998763211111 256999999999999876543333456899


Q ss_pred             CCcEEEeeceec---CHHHHHHHH
Q 035790          101 NMRFLWMSSCRL---TRQGCQEIA  121 (198)
Q Consensus       101 ~L~~L~L~~c~i---Td~gl~~La  121 (198)
                      +|++|++++|++   ....+..+.
T Consensus       174 ~L~~L~L~~N~l~~~~~~~l~~L~  197 (635)
T 4g8a_A          174 NLEHLDLSSNKIQSIYCTDLRVLH  197 (635)
T ss_dssp             TCCEEECCSSCCCEECGGGGHHHH
T ss_pred             hhhhhcccCccccccccccccchh
Confidence            999999999974   344555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.21  E-value=2.4e-05  Score=62.99  Aligned_cols=88  Identities=11%  Similarity=0.102  Sum_probs=61.7

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      +.++++|++|+|++ .++...-..+ ..+++|++|+|+++..+...-..+ .++++|+.|+|++|.++.-.-. ....++
T Consensus        77 ~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~-~~~~l~  153 (220)
T 2v70_A           77 FEGASGVNEILLTSNRLENVQHKMF-KGLESLKTLMLRSNRITCVGNDSF-IGLSSVRLLSLYDNQITTVAPG-AFDTLH  153 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCGGGG-TTCSSCCEEECTTSCCCCBCTTSS-TTCTTCSEEECTTSCCCCBCTT-TTTTCT
T ss_pred             hCCCCCCCEEECCCCccCccCHhHh-cCCcCCCEEECCCCcCCeECHhHc-CCCccCCEEECCCCcCCEECHH-HhcCCC
Confidence            35789999999954 2332222223 368999999999988743211222 4689999999999987653212 235789


Q ss_pred             CCcEEEeeceec
Q 035790          101 NMRFLWMSSCRL  112 (198)
Q Consensus       101 ~L~~L~L~~c~i  112 (198)
                      +|++|+|+++++
T Consensus       154 ~L~~L~L~~N~l  165 (220)
T 2v70_A          154 SLSTLNLLANPF  165 (220)
T ss_dssp             TCCEEECCSCCE
T ss_pred             CCCEEEecCcCC
Confidence            999999999984

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.20  E-value=7.5e-05  Score=66.72  Aligned_cols=77  Identities=16%  Similarity=0.122  Sum_probs=37.4

Q ss_pred             CCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCc
Q 035790           25 CRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMR  103 (198)
Q Consensus        25 c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~  103 (198)
                      +++|++|++++ .+++.  ..++ .+++|++|+++++..++-.    ..++++|++|++++|.+++-.    ..++++|+
T Consensus        41 l~~L~~L~Ls~n~l~~~--~~l~-~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~  109 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM--TGIE-KLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNLD----VTPLTKLT  109 (457)
T ss_dssp             HTTCCEEECCSSCCCCC--TTGG-GCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC----CTTCTTCC
T ss_pred             cCCCCEEEccCCCcccC--hhhc-ccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCceee----cCCCCcCC
Confidence            45666666633 22321  1233 3566666666665543211    234555666666555544321    23455555


Q ss_pred             EEEeeceec
Q 035790          104 FLWMSSCRL  112 (198)
Q Consensus       104 ~L~L~~c~i  112 (198)
                      +|++++|++
T Consensus       110 ~L~L~~N~l  118 (457)
T 3bz5_A          110 YLNCDTNKL  118 (457)
T ss_dssp             EEECCSSCC
T ss_pred             EEECCCCcC
Confidence            555555553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.19  E-value=0.00019  Score=64.03  Aligned_cols=55  Identities=18%  Similarity=0.181  Sum_probs=26.7

Q ss_pred             cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790           73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      ++++|++|++++|.+++..    ..++++|++|++++|+++.  +.  ...++.|+...+..+
T Consensus       189 ~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          189 QNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             TCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSS
T ss_pred             cCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeCC
Confidence            3455555555555444321    2345556666666665443  11  224555555555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.16  E-value=8.4e-05  Score=67.29  Aligned_cols=89  Identities=13%  Similarity=0.185  Sum_probs=51.0

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      .++++|++|+|++ .+++..-..++ .+++|++|+|+++..+.  +...  .+++|++|++++|.+++-.+.....++++
T Consensus        73 ~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~  147 (562)
T 3a79_B           73 SFLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQN--ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTK  147 (562)
T ss_dssp             TTCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEECTTSCCCE--ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred             ccCCCccEEECCCCCCCcCCHHHhC-CCCCCCEEECCCCcCCc--cCcc--ccccCCEEECCCCCccccCchHhhcccCc
Confidence            4567777777743 22322122232 46777777777766531  1111  57777777777776654222122456778


Q ss_pred             CcEEEeeceecCHHH
Q 035790          102 MRFLWMSSCRLTRQG  116 (198)
Q Consensus       102 L~~L~L~~c~iTd~g  116 (198)
                      |++|++++++++..+
T Consensus       148 L~~L~L~~n~l~~~~  162 (562)
T 3a79_B          148 LTFLGLSAAKFRQLD  162 (562)
T ss_dssp             CCEEEEECSBCCTTT
T ss_pred             ccEEecCCCccccCc
Confidence            888888887766543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.16  E-value=2.7e-05  Score=61.59  Aligned_cols=105  Identities=13%  Similarity=0.103  Sum_probs=69.3

Q ss_pred             CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF  104 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~  104 (198)
                      ++|++|++++ .++.-. ..+ ..+++|+.|+|+++..+.-.-..+ .++++|++|+|++|.++.-.-.. ...+++|++
T Consensus        31 ~~l~~L~L~~n~i~~ip-~~~-~~l~~L~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~~~-f~~l~~L~~  106 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVP-KEL-SNYKHLTLIDLSNNRISTLSNQSF-SNMTQLLTLILSYNRLRCIPPRT-FDGLKSLRL  106 (193)
T ss_dssp             TTCCEEECCSSCCCSCC-GGG-GGCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCE
T ss_pred             CCCCEEECCCCcCchhH-HHh-hcccCCCEEECCCCcCCEeCHhHc-cCCCCCCEEECCCCccCEeCHHH-hCCCCCCCE
Confidence            5899999954 233211 233 368999999999988743221222 46899999999999776432212 357899999


Q ss_pred             EEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          105 LWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       105 L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |+|++|+++.-.-.. ...+++|+...+..+
T Consensus       107 L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          107 LSLHGNDISVVPEGA-FNDLSALSHLAIGAN  136 (193)
T ss_dssp             EECCSSCCCBCCTTT-TTTCTTCCEEECCSS
T ss_pred             EECCCCCCCeeChhh-hhcCccccEEEeCCC
Confidence            999999865321111 235778887777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.16  E-value=1.9e-05  Score=60.84  Aligned_cols=88  Identities=11%  Similarity=0.158  Sum_probs=55.2

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..+++|++|++++ .++.-.-..+ ..+++|++|+++++..+...- ....++++|+.|++++|.++.-. ..+...+++
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~  125 (177)
T 2o6r_A           49 DKLTQLTKLSLSQNQIQSLPDGVF-DKLTKLTILYLHENKLQSLPN-GVFDKLTQLKELALDTNQLKSVP-DGIFDRLTS  125 (177)
T ss_dssp             TTCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTT
T ss_pred             cCcccccEEECCCCcceEeChhHc-cCCCccCEEECCCCCccccCH-HHhhCCcccCEEECcCCcceEeC-HHHhcCCcc
Confidence            5678888888854 2232111112 257888899888887632111 12246788899999888765322 122356888


Q ss_pred             CcEEEeeceecC
Q 035790          102 MRFLWMSSCRLT  113 (198)
Q Consensus       102 L~~L~L~~c~iT  113 (198)
                      |++|++++|+++
T Consensus       126 L~~L~l~~N~~~  137 (177)
T 2o6r_A          126 LQKIWLHTNPWD  137 (177)
T ss_dssp             CCEEECCSSCBC
T ss_pred             cCEEEecCCCee
Confidence            889999888843

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.11  E-value=9.5e-06  Score=63.90  Aligned_cols=89  Identities=16%  Similarity=0.151  Sum_probs=56.2

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      +..+++|++|+|++ .++...-..++ ..++|++|+|+++..+...-.. ..++++|++|++++|.++...-. ....++
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~  126 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEISNKM-FLGLHQLKTLNLYDNQISCVMPG-SFEHLN  126 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSCCCCEECSSS-STTCTTCCEEECCSSCCCEECTT-SSTTCT
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCCeeCHH-HhhcCC
Confidence            35678888888854 23332112233 4688888888888763221111 24578888888888877643211 235678


Q ss_pred             CCcEEEeeceecC
Q 035790          101 NMRFLWMSSCRLT  113 (198)
Q Consensus       101 ~L~~L~L~~c~iT  113 (198)
                      +|++|+|+++.++
T Consensus       127 ~L~~L~L~~N~l~  139 (192)
T 1w8a_A          127 SLTSLNLASNPFN  139 (192)
T ss_dssp             TCCEEECTTCCBC
T ss_pred             CCCEEEeCCCCcc
Confidence            8888888888754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.07  E-value=4.3e-05  Score=65.78  Aligned_cols=109  Identities=14%  Similarity=0.112  Sum_probs=71.7

Q ss_pred             hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCC
Q 035790           24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNM  102 (198)
Q Consensus        24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L  102 (198)
                      .+++|++|+|++ .++.-.-..+. .+++|++|+|+++..+.-.-. ...++++|+.|+|++|.|+.-.-. ....+++|
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L  138 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSSNHLHTLDEF-LFSDLQALEVLLLYNNHIVVVDRN-AFEDMAQL  138 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTT-TTTTCTTC
T ss_pred             cccccCEEECCCCcCCccChhhcc-CCCCCCEEECCCCcCCcCCHH-HhCCCcCCCEEECCCCcccEECHH-HhCCcccC
Confidence            789999999954 33332212233 579999999999877422111 235689999999999987653211 24678999


Q ss_pred             cEEEeeceecCHHHHHHHH--HhCCCCcEEEecCC
Q 035790          103 RFLWMSSCRLTRQGCQEIA--QAMPRLVVEVIRSD  135 (198)
Q Consensus       103 ~~L~L~~c~iTd~gl~~La--~~~p~L~~~~i~~~  135 (198)
                      ++|+|++|+++.-....+.  ..+++|+...+..+
T Consensus       139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             CEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence            9999999986542211111  35788887777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.05  E-value=2.3e-05  Score=65.75  Aligned_cols=86  Identities=16%  Similarity=0.188  Sum_probs=52.1

Q ss_pred             hcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCC
Q 035790           47 KYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPR  126 (198)
Q Consensus        47 ~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~  126 (198)
                      ..+++|++|+++++..+.-.... ..++++|++|++++|.++.-. ..+...+++|+.|+|++|+++.-.- .+...+++
T Consensus        97 ~~l~~L~~L~l~~N~l~~l~~~~-~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~  173 (290)
T 1p9a_G           97 QTLPALTVLDVSFNRLTSLPLGA-LRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPA-GLLNGLEN  173 (290)
T ss_dssp             TTCTTCCEEECCSSCCCCCCSST-TTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTT
T ss_pred             ccCCCCCEEECCCCcCcccCHHH-HcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCcCCccCH-HHhcCcCC
Confidence            35678888888887663211111 245788888888888665321 1123467888888888887552111 11234677


Q ss_pred             CcEEEecCC
Q 035790          127 LVVEVIRSD  135 (198)
Q Consensus       127 L~~~~i~~~  135 (198)
                      |+...+..+
T Consensus       174 L~~L~L~~N  182 (290)
T 1p9a_G          174 LDTLLLQEN  182 (290)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECCCC
Confidence            777776654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.03  E-value=6.6e-05  Score=59.30  Aligned_cols=88  Identities=13%  Similarity=0.149  Sum_probs=61.3

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      +.++++|++|+|++ .++.-.-..+. .+++|++|+|+++..+.-.-..+ .++++|+.|+|++|.++.-.- .....++
T Consensus        50 ~~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~l~~i~~~~f-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~  126 (193)
T 2wfh_A           50 LSNYKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYNRLRCIPPRTF-DGLKSLRLLSLHGNDISVVPE-GAFNDLS  126 (193)
T ss_dssp             GGGCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECCSSCCCBCCT-TTTTTCT
T ss_pred             hhcccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCCCccCEeCHHHh-CCCCCCCEEECCCCCCCeeCh-hhhhcCc
Confidence            46789999999954 33432212233 57999999999988743221222 468999999999997763221 1235789


Q ss_pred             CCcEEEeeceec
Q 035790          101 NMRFLWMSSCRL  112 (198)
Q Consensus       101 ~L~~L~L~~c~i  112 (198)
                      +|++|+|+++++
T Consensus       127 ~L~~L~L~~N~~  138 (193)
T 2wfh_A          127 ALSHLAIGANPL  138 (193)
T ss_dssp             TCCEEECCSSCE
T ss_pred             cccEEEeCCCCe
Confidence            999999999983

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.01  E-value=3.9e-05  Score=64.78  Aligned_cols=101  Identities=19%  Similarity=0.175  Sum_probs=59.5

Q ss_pred             CCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEE
Q 035790           27 KLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFL  105 (198)
Q Consensus        27 ~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L  105 (198)
                      +|++|++++ .+++-  .  ....++|++|+++++..++.....+ .++++|++|++++|.+++..-.. ...+++|++|
T Consensus       173 ~L~~L~l~~n~l~~l--~--~~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L  246 (332)
T 2ft3_A          173 KLNYLRISEAKLTGI--P--KDLPETLNELHLDHNKIQAIELEDL-LRYSKLYRLGLGHNQIRMIENGS-LSFLPTLREL  246 (332)
T ss_dssp             CCSCCBCCSSBCSSC--C--SSSCSSCSCCBCCSSCCCCCCTTSS-TTCTTCSCCBCCSSCCCCCCTTG-GGGCTTCCEE
T ss_pred             ccCEEECcCCCCCcc--C--ccccCCCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCCcCChhH-hhCCCCCCEE
Confidence            777787743 22320  0  0123678888888776643322222 35778888888888665532212 3567788888


Q ss_pred             EeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          106 WMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       106 ~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      ++++|+++.  +..-...+++|+...+..+
T Consensus       247 ~L~~N~l~~--lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          247 HLDNNKLSR--VPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             ECCSSCCCB--CCTTGGGCTTCCEEECCSS
T ss_pred             ECCCCcCee--cChhhhcCccCCEEECCCC
Confidence            888887552  1111245777777777665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.94  E-value=8.8e-05  Score=57.30  Aligned_cols=38  Identities=8%  Similarity=0.154  Sum_probs=16.2

Q ss_pred             cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790           73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR  111 (198)
Q Consensus        73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~  111 (198)
                      ++++|++|+|++|.++.-.- .+..++++|++|+|++++
T Consensus        52 ~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           52 RLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             CcccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCCc
Confidence            34455555555554332110 111344555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.92  E-value=9.3e-05  Score=57.55  Aligned_cols=37  Identities=11%  Similarity=0.090  Sum_probs=15.0

Q ss_pred             CCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790           74 CPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR  111 (198)
Q Consensus        74 C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~  111 (198)
                      +++|++|+|++|.++.-- ..+..++++|++|+|++|+
T Consensus        56 l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           56 LVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             CTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             CcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCc
Confidence            444555555544433210 0011334445555555444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.91  E-value=2.9e-05  Score=73.60  Aligned_cols=106  Identities=10%  Similarity=0.090  Sum_probs=66.9

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ...+++|+.|+|++ .++. .-..+. .+++|++|+|+++..+  .+-.-..++++|+.|+|++|.|+  .+-....+++
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~-l~~~~~-~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~  293 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFN-ISANIF-KYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCF  293 (727)
T ss_dssp             --CCCCCCEEECTTSCCSC-CCGGGG-GCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGT
T ss_pred             hccCCCCcEEECCCCCCCC-CChhhc-CCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCC
Confidence            45678888898854 2221 001122 5788999999888764  12111256889999999998776  2222246788


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|+|++|.++.  +..-...+++|+.+.+..+
T Consensus       294 ~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          294 QLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             TCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTS
T ss_pred             CCCEEECCCCCCCc--cChhhhcCCCccEEeCCCC
Confidence            89999999988542  1111235778887777765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.88  E-value=0.00021  Score=60.38  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=18.1

Q ss_pred             CCceeEecCCCCHHHHHHHHhcCCCCcEEEeecc
Q 035790           27 KLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFA   60 (198)
Q Consensus        27 ~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c   60 (198)
                      +|++|.++|.+....+..+....++|+.|+|+.+
T Consensus        26 ~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n   59 (329)
T 3sb4_A           26 SITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNA   59 (329)
T ss_dssp             HCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEE
T ss_pred             ceeEEEEeccccHHHHHHHHHhhccCeEEecCcc
Confidence            4555555554455555555544555555555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.73  E-value=0.00048  Score=64.32  Aligned_cols=97  Identities=13%  Similarity=0.014  Sum_probs=60.4

Q ss_pred             CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCc
Q 035790           49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLV  128 (198)
Q Consensus        49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~  128 (198)
                      .++|+.|++++|..+.     +...+++|++|++++|.|+.     +...+++|++|+|++|+++.  +..-...+++|+
T Consensus       220 ~~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls~N~L~~--lp~~l~~l~~L~  287 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-----LPVLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLTR--LPESLIHLSSET  287 (622)
T ss_dssp             CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCCS--CCGGGGGSCTTC
T ss_pred             CCCCCEEEccCCccCc-----CCCCCCcCcEEECCCCCCCc-----CCcccccCcEEeCCCCCCCc--CCHHHhhccccC
Confidence            3677777777776533     12567888888888886652     22267889999999988652  222234688888


Q ss_pred             EEEecCCCC-chhHhHHHHHhHhhhccCCC
Q 035790          129 VEVIRSDDE-EETDNYVETLYMYRSLEGPR  157 (198)
Q Consensus       129 ~~~i~~~~~-~~~~~~~~~~~~y~sl~g~r  157 (198)
                      ...+..+.- ......+..+.......||.
T Consensus       288 ~L~L~~N~l~~~~~~~l~~L~~~~~~~g~~  317 (622)
T 3g06_A          288 TVNLEGNPLSERTLQALREITSAPGYSGPI  317 (622)
T ss_dssp             EEECCSCCCCHHHHHHHHHHHHSTTCCSCE
T ss_pred             EEEecCCCCCCcCHHHHHhcccccccCCCc
Confidence            888877632 22233445555544555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.66  E-value=0.00015  Score=68.56  Aligned_cols=85  Identities=24%  Similarity=0.231  Sum_probs=61.5

Q ss_pred             hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCC
Q 035790           24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNM  102 (198)
Q Consensus        24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L  102 (198)
                      .+++|++|+|++ .++ ..-..|+ .+++|+.|+|+++..+  .+-.-..++++|+.|+|++|.|+.  +-....++++|
T Consensus       245 ~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L  318 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNL  318 (727)
T ss_dssp             GCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSCCCC--CCSSTTSCTTC
T ss_pred             CCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCCCCc--cChhhhcCCCc
Confidence            689999999955 334 1112243 6899999999999874  121112568999999999997762  22224689999


Q ss_pred             cEEEeeceecCH
Q 035790          103 RFLWMSSCRLTR  114 (198)
Q Consensus       103 ~~L~L~~c~iTd  114 (198)
                      ++|+|++|+++.
T Consensus       319 ~~L~L~~N~l~~  330 (727)
T 4b8c_D          319 QFLGVEGNPLEK  330 (727)
T ss_dssp             CCEECTTSCCCS
T ss_pred             cEEeCCCCccCC
Confidence            999999999763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=96.64  E-value=4.3e-05  Score=61.51  Aligned_cols=59  Identities=14%  Similarity=0.120  Sum_probs=25.5

Q ss_pred             cCCCCcEEEeec-cCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCc---EEEeece
Q 035790           48 YGKLIRTLSVAF-AGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMR---FLWMSSC  110 (198)
Q Consensus        48 ~~~~L~~L~L~~-c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~---~L~L~~c  110 (198)
                      .+++|++|++++ +..+.-.-.. ..++++|++|++++|.++.  +.. ...+++|+   +|++++|
T Consensus        78 ~l~~L~~L~l~~~n~l~~i~~~~-f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C           78 NLSKVTHIEIRNTRNLTYIDPDA-LKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             SCTTCCEEEEEEETTCCEECTTS-EECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESC
T ss_pred             CCcCCcEEECCCCCCeeEcCHHH-hCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCC
Confidence            345555555554 2222111111 1245555555555554432  111 23444444   5555555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=96.63  E-value=0.00015  Score=61.17  Aligned_cols=106  Identities=9%  Similarity=0.129  Sum_probs=70.1

Q ss_pred             CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF  104 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~  104 (198)
                      ++|++|++++ .+++.....+. .+++|+.|+++++..++..-..+ .++++|++|++++|.++.  +.....++++|++
T Consensus       193 ~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~  268 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLSR--VPAGLPDLKLLQV  268 (332)
T ss_dssp             SSCSCCBCCSSCCCCCCTTSST-TCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCCB--CCTTGGGCTTCCE
T ss_pred             CCCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCcCee--cChhhhcCccCCE
Confidence            6899999954 33443333343 57899999999987643222222 468999999999997763  2222467899999


Q ss_pred             EEeeceecCHHHHHHHHHh-----CCCCcEEEecCC
Q 035790          105 LWMSSCRLTRQGCQEIAQA-----MPRLVVEVIRSD  135 (198)
Q Consensus       105 L~L~~c~iTd~gl~~La~~-----~p~L~~~~i~~~  135 (198)
                      |++++|+++..+...+...     .+.|+...+..+
T Consensus       269 L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N  304 (332)
T 2ft3_A          269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN  304 (332)
T ss_dssp             EECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred             EECCCCCCCccChhHccccccccccccccceEeecC
Confidence            9999998776554444322     355665655554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.53  E-value=0.00015  Score=61.41  Aligned_cols=101  Identities=13%  Similarity=0.152  Sum_probs=61.3

Q ss_pred             CCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCC--CCChHHHHHHHhcCCCC
Q 035790           25 CRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS--PFGDAALRSGLHHYYNM  102 (198)
Q Consensus        25 c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c--~~tD~~l~~i~~~~~~L  102 (198)
                      ..++..+.+.+.+....+..+..+|++|++|+|..+..+.-+-.++ .+|++|++|++.++  .|.+.+    -.+|++|
T Consensus       201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF-~~~~~L~~l~l~~ni~~I~~~a----F~~~~~L  275 (329)
T 3sb4_A          201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF-AQKKYLLKIKLPHNLKTIGQRV----FSNCGRL  275 (329)
T ss_dssp             GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT-TTCTTCCEEECCTTCCEECTTT----TTTCTTC
T ss_pred             ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh-hCCCCCCEEECCcccceehHHH----hhCChhc
Confidence            4455666666656777777777778888888887765422221222 46888888888776  244443    2467778


Q ss_pred             c-EEEeece-e-cCHHHHHHHHHhCCCCcEEEecC
Q 035790          103 R-FLWMSSC-R-LTRQGCQEIAQAMPRLVVEVIRS  134 (198)
Q Consensus       103 ~-~L~L~~c-~-iTd~gl~~La~~~p~L~~~~i~~  134 (198)
                      + .|.+... . |.+.++    ..|++|+...+..
T Consensus       276 ~~~l~l~~~l~~I~~~aF----~~c~~L~~l~l~~  306 (329)
T 3sb4_A          276 AGTLELPASVTAIEFGAF----MGCDNLRYVLATG  306 (329)
T ss_dssp             CEEEEECTTCCEECTTTT----TTCTTEEEEEECS
T ss_pred             cEEEEEcccceEEchhhh----hCCccCCEEEeCC
Confidence            7 8877662 1 443332    2577776655543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.52  E-value=0.0013  Score=61.28  Aligned_cols=85  Identities=19%  Similarity=0.130  Sum_probs=61.6

Q ss_pred             CCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCc
Q 035790           25 CRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMR  103 (198)
Q Consensus        25 c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~  103 (198)
                      .++|+.|++++ .++.     |...+++|+.|+|++|..+.     |...+++|+.|++++|.++.  +-....++++|+
T Consensus       220 ~~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls~N~L~~--lp~~l~~l~~L~  287 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-----LPVLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLTR--LPESLIHLSSET  287 (622)
T ss_dssp             CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCCS--CCGGGGGSCTTC
T ss_pred             CCCCCEEEccCCccCc-----CCCCCCcCcEEECCCCCCCc-----CCcccccCcEEeCCCCCCCc--CCHHHhhccccC
Confidence            36788888854 2332     22567999999999987642     11268999999999998772  222356899999


Q ss_pred             EEEeeceecCHHHHHHHH
Q 035790          104 FLWMSSCRLTRQGCQEIA  121 (198)
Q Consensus       104 ~L~L~~c~iTd~gl~~La  121 (198)
                      .|+|++|+++......+.
T Consensus       288 ~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          288 TVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             EEECCSCCCCHHHHHHHH
T ss_pred             EEEecCCCCCCcCHHHHH
Confidence            999999998876555444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.46  E-value=0.00082  Score=62.18  Aligned_cols=84  Identities=17%  Similarity=0.134  Sum_probs=43.1

Q ss_pred             HHHHHHH-hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHH
Q 035790           16 EGFGAIV-RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALR   93 (198)
Q Consensus        16 ~g~~ai~-~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~   93 (198)
                      .++..+- -.|.+|+.|++++ .++.  +..  ..+++|+.|+|+++..+.  +.   ..+++|+.|++++|.|+.  +.
T Consensus        48 ~~~~~l~~C~~~~L~~L~Ls~n~L~~--lp~--~l~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~--ip  116 (571)
T 3cvr_A           48 EAVSLLKECLINQFSELQLNRLNLSS--LPD--NLPPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST--LP  116 (571)
T ss_dssp             HHHHHHHHHHHTTCSEEECCSSCCSC--CCS--CCCTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC--CC
T ss_pred             chhhhccccccCCccEEEeCCCCCCc--cCH--hHcCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC--cc
Confidence            3455442 2345888888844 2232  110  013667777777766531  11   346677777777665543  11


Q ss_pred             HHHhcCCCCcEEEeeceecC
Q 035790           94 SGLHHYYNMRFLWMSSCRLT  113 (198)
Q Consensus        94 ~i~~~~~~L~~L~L~~c~iT  113 (198)
                      .+   ..+|++|+|++|+++
T Consensus       117 ~l---~~~L~~L~Ls~N~l~  133 (571)
T 3cvr_A          117 EL---PASLKHLDVDNNQLT  133 (571)
T ss_dssp             CC---CTTCCEEECCSSCCS
T ss_pred             hh---hcCCCEEECCCCcCC
Confidence            11   115666666666543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=96.12  E-value=0.0004  Score=55.72  Aligned_cols=106  Identities=17%  Similarity=0.097  Sum_probs=66.0

Q ss_pred             hhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCc---eEEecCC-CCChHHHHHHH
Q 035790           23 RNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQ---KLEIRDS-PFGDAALRSGL   96 (198)
Q Consensus        23 ~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~---~L~L~~c-~~tD~~l~~i~   96 (198)
                      .++++|++|++++  .++.-.-..+ ..+++|++|+++++..+.  +.. ..++++|+   .|++++| .++.-.-.. .
T Consensus        77 ~~l~~L~~L~l~~~n~l~~i~~~~f-~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~  151 (239)
T 2xwt_C           77 YNLSKVTHIEIRNTRNLTYIDPDAL-KELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA-F  151 (239)
T ss_dssp             ESCTTCCEEEEEEETTCCEECTTSE-ECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT-T
T ss_pred             CCCcCCcEEECCCCCCeeEcCHHHh-CCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCccc-c
Confidence            4678888888853  3342211112 257899999999987632  222 34688888   9999999 776432111 3


Q ss_pred             hcCCCCc-EEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790           97 HHYYNMR-FLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        97 ~~~~~L~-~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      .++++|+ +|+++++.++.-.-..+  ..++|+...+..+
T Consensus       152 ~~l~~L~~~L~l~~n~l~~i~~~~~--~~~~L~~L~L~~n  189 (239)
T 2xwt_C          152 QGLCNETLTLKLYNNGFTSVQGYAF--NGTKLDAVYLNKN  189 (239)
T ss_dssp             TTTBSSEEEEECCSCCCCEECTTTT--TTCEEEEEECTTC
T ss_pred             cchhcceeEEEcCCCCCcccCHhhc--CCCCCCEEEcCCC
Confidence            5788999 99999998553211111  1256666666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.02  E-value=0.00051  Score=52.91  Aligned_cols=85  Identities=11%  Similarity=0.140  Sum_probs=58.3

Q ss_pred             CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF  104 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~  104 (198)
                      ++|++|+|++ .++.-.-..++ ..++|++|+|+++..+.--- .+..++++|+.|+|++|.|+.-.- ....++++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred             CCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCE
Confidence            7899999954 22322112233 57899999999987742111 123578999999999997763221 12457899999


Q ss_pred             EEeeceecC
Q 035790          105 LWMSSCRLT  113 (198)
Q Consensus       105 L~L~~c~iT  113 (198)
                      |+|++++++
T Consensus       107 L~L~~N~~~  115 (170)
T 3g39_A          107 IWLLNNPWD  115 (170)
T ss_dssp             EECCSSCBC
T ss_pred             EEeCCCCCC
Confidence            999999854

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=95.91  E-value=0.0028  Score=58.57  Aligned_cols=35  Identities=9%  Similarity=-0.041  Sum_probs=17.1

Q ss_pred             cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceec
Q 035790           73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL  112 (198)
Q Consensus        73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~i  112 (198)
                      .+++|+.|++++|.++.     +...+++|++|+|++|.+
T Consensus       138 ~l~~L~~L~Ls~N~l~~-----lp~~l~~L~~L~Ls~N~L  172 (571)
T 3cvr_A          138 LPALLEYINADNNQLTM-----LPELPTSLEVLSVRNNQL  172 (571)
T ss_dssp             CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCC
T ss_pred             cCccccEEeCCCCccCc-----CCCcCCCcCEEECCCCCC
Confidence            34555555555554432     111345555555555553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=95.89  E-value=0.00063  Score=52.74  Aligned_cols=85  Identities=12%  Similarity=0.158  Sum_probs=58.2

Q ss_pred             CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF  104 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~  104 (198)
                      ++|++|+|++ .++.-.-..++ .+++|+.|+|+++..+.-- ..+..++++|+.|+|++|.|+.-- .....++++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCCccccCHHHhc-CCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccceeC-HHHhccccCCCE
Confidence            7899999954 23322112233 5799999999998774211 112356899999999999776321 112457899999


Q ss_pred             EEeeceecC
Q 035790          105 LWMSSCRLT  113 (198)
Q Consensus       105 L~L~~c~iT  113 (198)
                      |+|++++++
T Consensus       110 L~L~~N~~~  118 (174)
T 2r9u_A          110 IYLYNNPWD  118 (174)
T ss_dssp             EECCSSCBC
T ss_pred             EEeCCCCcc
Confidence            999999854

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=95.61  E-value=0.0057  Score=54.36  Aligned_cols=74  Identities=11%  Similarity=0.081  Sum_probs=32.2

Q ss_pred             CCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcE
Q 035790           50 KLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVV  129 (198)
Q Consensus        50 ~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~  129 (198)
                      ++|++|+++++..+.  +..+ .++++|+.|++++|.++.     +....++|++|++++|.++.  +..+ ..+++|+.
T Consensus       173 ~~L~~L~L~~n~l~~--l~~~-~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l~~n~l~~--lp~~-~~l~~L~~  241 (454)
T 1jl5_A          173 PSLEFIAAGNNQLEE--LPEL-QNLPFLTAIYADNNSLKK-----LPDLPLSLESIVAGNNILEE--LPEL-QNLPFLTT  241 (454)
T ss_dssp             TTCCEEECCSSCCSS--CCCC-TTCTTCCEEECCSSCCSS-----CCCCCTTCCEEECCSSCCSS--CCCC-TTCTTCCE
T ss_pred             ccccEEECcCCcCCc--Cccc-cCCCCCCEEECCCCcCCc-----CCCCcCcccEEECcCCcCCc--cccc-CCCCCCCE
Confidence            355555555554421  1111 345555555555554432     11122355555555555331  1111 24455555


Q ss_pred             EEecC
Q 035790          130 EVIRS  134 (198)
Q Consensus       130 ~~i~~  134 (198)
                      ..+..
T Consensus       242 L~l~~  246 (454)
T 1jl5_A          242 IYADN  246 (454)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            55444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.39  E-value=0.0016  Score=54.99  Aligned_cols=86  Identities=15%  Similarity=0.143  Sum_probs=46.5

Q ss_pred             hhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           23 RNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        23 ~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ..+++|++|+|++  .++.-.-..++ .+++|+.|+|+++..+.--- ....++++|+.|+|++|.|+.-- ..+...++
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~  104 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFNALESLS-WKTVQGLS  104 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSSCCSCCC-STTTCSCC
T ss_pred             CCCCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCCCccceeC-HHHcccCC
Confidence            4456778887752  33321111122 46778888887776532110 11245777888888877654211 01112233


Q ss_pred             CCcEEEeeceec
Q 035790          101 NMRFLWMSSCRL  112 (198)
Q Consensus       101 ~L~~L~L~~c~i  112 (198)
                       |+.|+|.++.+
T Consensus       105 -L~~l~l~~N~~  115 (347)
T 2ifg_A          105 -LQELVLSGNPL  115 (347)
T ss_dssp             -CCEEECCSSCC
T ss_pred             -ceEEEeeCCCc
Confidence             78888877773

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=94.76  E-value=0.011  Score=52.55  Aligned_cols=15  Identities=13%  Similarity=0.204  Sum_probs=7.6

Q ss_pred             cCCCCceEEecCCCC
Q 035790           73 GCPKLQKLEIRDSPF   87 (198)
Q Consensus        73 ~C~~L~~L~L~~c~~   87 (198)
                      ++++|++|++++|.+
T Consensus       235 ~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          235 NLPFLTTIYADNNLL  249 (454)
T ss_dssp             TCTTCCEEECCSSCC
T ss_pred             CCCCCCEEECCCCcC
Confidence            355555555555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.71  E-value=0.007  Score=50.96  Aligned_cols=84  Identities=19%  Similarity=0.158  Sum_probs=54.0

Q ss_pred             cCCCCcEEEeec-cCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCC
Q 035790           48 YGKLIRTLSVAF-AGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPR  126 (198)
Q Consensus        48 ~~~~L~~L~L~~-c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~  126 (198)
                      ..++|+.|+|++ +..+.---. ...++++|+.|+|++|.|+.-- .....++++|++|+|++|+++.--- .+....+ 
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~-  104 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALESLSW-KTVQGLS-  104 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCSCCCS-TTTCSCC-
T ss_pred             CCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccceeCH-HHcccCC-
Confidence            567899999985 665321111 1357999999999999876422 1123689999999999999653110 0111222 


Q ss_pred             CcEEEecCC
Q 035790          127 LVVEVIRSD  135 (198)
Q Consensus       127 L~~~~i~~~  135 (198)
                      |+...+..+
T Consensus       105 L~~l~l~~N  113 (347)
T 2ifg_A          105 LQELVLSGN  113 (347)
T ss_dssp             CCEEECCSS
T ss_pred             ceEEEeeCC
Confidence            776666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=92.01  E-value=0.012  Score=51.68  Aligned_cols=79  Identities=11%  Similarity=-0.036  Sum_probs=35.9

Q ss_pred             hcCCCCcEEEeeceecC--------HHHHHHHHHhCCCCcEEEecCCCCchhHhHHHHHhHhhhccCCCCCCCCcceee-
Q 035790           97 HHYYNMRFLWMSSCRLT--------RQGCQEIAQAMPRLVVEVIRSDDEEETDNYVETLYMYRSLEGPRHDAPKFVTIL-  167 (198)
Q Consensus        97 ~~~~~L~~L~L~~c~iT--------d~gl~~La~~~p~L~~~~i~~~~~~~~~~~~~~~~~y~sl~g~r~d~p~~v~~l-  167 (198)
                      .+|++|+++++.++.++        +.++    ..|++|+...++..-.......|..|....++.-     |..|..| 
T Consensus       268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF----~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~l-----p~~l~~I~  338 (401)
T 4fdw_A          268 YYCPELAEVTTYGSTFNDDPEAMIHPYCL----EGCPKLARFEIPESIRILGQGLLGGNRKVTQLTI-----PANVTQIN  338 (401)
T ss_dssp             TTCTTCCEEEEESSCCCCCTTCEECTTTT----TTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEE-----CTTCCEEC
T ss_pred             hCCCCCCEEEeCCccccCCcccEECHHHh----hCCccCCeEEeCCceEEEhhhhhcCCCCccEEEE-----CccccEEc
Confidence            45666666666654322        1111    2455555444442201222223444444333322     3334444 


Q ss_pred             ---cccCCcccccccccCCCh
Q 035790          168 ---RIIKPKLMLVQIKFAEPS  185 (198)
Q Consensus       168 ---~~~~~~~~~l~~~~~~~~  185 (198)
                         +-.| +|+.+.|+..+|.
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCC
T ss_pred             HHhCCCC-CCCEEEEcCCCCc
Confidence               3345 7777777665553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.18  E-value=0.21  Score=42.92  Aligned_cols=101  Identities=10%  Similarity=0.106  Sum_probs=55.5

Q ss_pred             hhCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCC--CCChHHHHHHHhcCC
Q 035790           23 RNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDS--PFGDAALRSGLHHYY  100 (198)
Q Consensus        23 ~~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c--~~tD~~l~~i~~~~~  100 (198)
                      .+|.+|+.+.+...++.-+- .....|++|+.+.+...-. .-|-.++ .+|.+|++++|..+  .|.+.+.    .+|+
T Consensus       262 ~~c~~L~~i~lp~~~~~I~~-~aF~~c~~L~~i~l~~~i~-~I~~~aF-~~c~~L~~i~lp~~v~~I~~~aF----~~C~  334 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVVSIGT-GAFMNCPALQDIEFSSRIT-ELPESVF-AGCISLKSIDIPEGITQILDDAF----AGCE  334 (394)
T ss_dssp             TTCSSCCEEECCTTCCEECT-TTTTTCTTCCEEECCTTCC-EECTTTT-TTCTTCCEEECCTTCCEECTTTT----TTCT
T ss_pred             eecccccEEecccccceecC-cccccccccccccCCCccc-ccCceee-cCCCCcCEEEeCCcccEehHhHh----hCCC
Confidence            57888888888432221110 1112577888877753221 1111122 46788888888665  3555443    4677


Q ss_pred             CCcEEEeece-e-cCHHHHHHHHHhCCCCcEEEecC
Q 035790          101 NMRFLWMSSC-R-LTRQGCQEIAQAMPRLVVEVIRS  134 (198)
Q Consensus       101 ~L~~L~L~~c-~-iTd~gl~~La~~~p~L~~~~i~~  134 (198)
                      +|+++.|-.. . |.+.+.    ..|++|+...+..
T Consensus       335 ~L~~i~ip~sv~~I~~~aF----~~C~~L~~i~~~~  366 (394)
T 4gt6_A          335 QLERIAIPSSVTKIPESAF----SNCTALNNIEYSG  366 (394)
T ss_dssp             TCCEEEECTTCCBCCGGGG----TTCTTCCEEEESS
T ss_pred             CCCEEEECcccCEEhHhHh----hCCCCCCEEEECC
Confidence            8888877543 2 444332    3677777555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=88.69  E-value=0.023  Score=48.24  Aligned_cols=84  Identities=14%  Similarity=0.151  Sum_probs=44.3

Q ss_pred             CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEe-cCCCCChHHHHHHHhcCCCC
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEI-RDSPFGDAALRSGLHHYYNM  102 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L-~~c~~tD~~l~~i~~~~~~L  102 (198)
                      ++|++|+|++ .++.-.-..+ ..+++|++|+|+++.. +.-.-. ...++++|+++.+ ..+.++.-.- ....++++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVLEVIEAD-VFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSS-TTCTTCCEEEEECCTTCCEECTT-SBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTC
T ss_pred             CCCCEEEccCCcCCCcCHHHH-cCCCCCCEEECcCCCCCCccChh-HhhcchhhhhhhcccCCcccccCc-hhhhhcccc
Confidence            5788888854 2231100111 2578889999888764 210001 1235666665443 3344432110 113567778


Q ss_pred             cEEEeeceec
Q 035790          103 RFLWMSSCRL  112 (198)
Q Consensus       103 ~~L~L~~c~i  112 (198)
                      ++|++++|++
T Consensus       107 ~~L~l~~n~l  116 (350)
T 4ay9_X          107 QYLLISNTGI  116 (350)
T ss_dssp             CEEEEEEECC
T ss_pred             cccccccccc
Confidence            8888887764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=87.00  E-value=0.088  Score=46.09  Aligned_cols=32  Identities=34%  Similarity=0.586  Sum_probs=14.8

Q ss_pred             cCCCCceEEecCC--CCChHHHHHHHhcCCCCcEEEee
Q 035790           73 GCPKLQKLEIRDS--PFGDAALRSGLHHYYNMRFLWMS  108 (198)
Q Consensus        73 ~C~~L~~L~L~~c--~~tD~~l~~i~~~~~~L~~L~L~  108 (198)
                      +|++|+.++|.+.  .|.+.++    .+|++|++|.|.
T Consensus       298 ~c~~L~~l~l~~~i~~I~~~aF----~~c~~L~~l~lp  331 (401)
T 4fdw_A          298 GCPKLARFEIPESIRILGQGLL----GGNRKVTQLTIP  331 (401)
T ss_dssp             TCTTCCEECCCTTCCEECTTTT----TTCCSCCEEEEC
T ss_pred             CCccCCeEEeCCceEEEhhhhh----cCCCCccEEEEC
Confidence            4555555555533  1333221    345555555553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=82.77  E-value=0.42  Score=40.92  Aligned_cols=34  Identities=21%  Similarity=0.417  Sum_probs=17.2

Q ss_pred             cCCCCceEEecCC--CCChHHHHHHHhcCCCCcEEEeece
Q 035790           73 GCPKLQKLEIRDS--PFGDAALRSGLHHYYNMRFLWMSSC  110 (198)
Q Consensus        73 ~C~~L~~L~L~~c--~~tD~~l~~i~~~~~~L~~L~L~~c  110 (198)
                      +|.+|+++.|..+  .|.+.++    .+|++|+++.+.+.
T Consensus       332 ~C~~L~~i~ip~sv~~I~~~aF----~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          332 GCEQLERIAIPSSVTKIPESAF----SNCTALNNIEYSGS  367 (394)
T ss_dssp             TCTTCCEEEECTTCCBCCGGGG----TTCTTCCEEEESSC
T ss_pred             CCCCCCEEEECcccCEEhHhHh----hCCCCCCEEEECCc
Confidence            4556666655443  2343332    34556666655554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=81.34  E-value=0.2  Score=42.47  Aligned_cols=101  Identities=11%  Similarity=0.116  Sum_probs=63.4

Q ss_pred             hhCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCC---CChHHHHHHHhcC
Q 035790           23 RNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSP---FGDAALRSGLHHY   99 (198)
Q Consensus        23 ~~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~---~tD~~l~~i~~~~   99 (198)
                      .+|.+|+.+.+...++.-+-. ....|.+|+.+.+...-. .-|-.+ -.+|++|+++.+.++.   |.+.+    -.+|
T Consensus       237 ~~~~~L~~i~lp~~v~~I~~~-aF~~~~~l~~i~l~~~i~-~i~~~a-F~~c~~L~~i~l~~~~i~~I~~~a----F~~c  309 (379)
T 4h09_A          237 YGMKALDEIAIPKNVTSIGSF-LLQNCTALKTLNFYAKVK-TVPYLL-CSGCSNLTKVVMDNSAIETLEPRV----FMDC  309 (379)
T ss_dssp             TTCSSCCEEEECTTCCEECTT-TTTTCTTCCEEEECCCCS-EECTTT-TTTCTTCCEEEECCTTCCEECTTT----TTTC
T ss_pred             cCCccceEEEcCCCccEeCcc-ccceeehhccccccccce-eccccc-cccccccccccccccccceehhhh----hcCC
Confidence            579999999995433321111 223688999998864322 112122 2579999999998764   44543    3579


Q ss_pred             CCCcEEEeec-ee-cCHHHHHHHHHhCCCCcEEEecC
Q 035790          100 YNMRFLWMSS-CR-LTRQGCQEIAQAMPRLVVEVIRS  134 (198)
Q Consensus       100 ~~L~~L~L~~-c~-iTd~gl~~La~~~p~L~~~~i~~  134 (198)
                      ++|+++.|.. .. |.+.+.    ..|.+|+...++.
T Consensus       310 ~~L~~i~lp~~l~~I~~~aF----~~C~~L~~i~ip~  342 (379)
T 4h09_A          310 VKLSSVTLPTALKTIQVYAF----KNCKALSTISYPK  342 (379)
T ss_dssp             TTCCEEECCTTCCEECTTTT----TTCTTCCCCCCCT
T ss_pred             CCCCEEEcCccccEEHHHHh----hCCCCCCEEEECC
Confidence            9999999954 33 665443    3678887555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-06
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 52  IRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDA---ALRSGLHHYYNMRFLWMS 108
           I++L +     SD     +L    + Q + + D    +A    + S L     +  L + 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 109 SCRLTRQGCQEIAQAMP 125
           S  L   G   + Q + 
Sbjct: 64  SNELGDVGVHCVLQGLQ 80

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-05
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 77  LQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRL 127
           +Q L+I+     DA     L      + + +  C LT   C++I+ A+   
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN 54

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 3e-04
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 52  IRTLSVAFAGDSDMGLKYV---LEGCPKLQKLEIRDSPFGDA---ALRSGL-HHYYNMRF 104
           +R L +A    SD     +   L     L++L++ ++  GDA    L   +      +  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 105 LWMSSCRLTRQGC---QEIAQAMPRLVV 129
           L +     + +     Q + +  P L V
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 29  TRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPF 87
             L ++G  L     G +   G +      +F                ++Q +++ +S  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF----SPFRVQHMDLSNSVI 58

Query: 88  GDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQ 122
             + L   L     ++ L +   RL+      +A+
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.76
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.68
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.34
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.29
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.26
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.22
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.11
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.06
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.03
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.27
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.17
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.05
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.92
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.47
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.47
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.42
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.35
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.33
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.29
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.29
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	96.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.89
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.73
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.3
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.29
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.11
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	95.41
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.2
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	94.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	94.49
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	93.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	92.75
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	92.13
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	89.83

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.7e-18  Score=141.47  Aligned_cols=168  Identities=19%  Similarity=0.234  Sum_probs=130.9

Q ss_pred             CcHHHHHHHHhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCC-CCCh
Q 035790           13 PMDEGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDS-PFGD   89 (198)
Q Consensus        13 ~~D~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c-~~tD   89 (198)
                      ++++++.+++.+|++|++|++++ .++|..+..|++ +++|+.|++++|.. +|.|+..++++|++|++|++++| .++|
T Consensus        58 i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~  136 (284)
T d2astb2          58 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE  136 (284)
T ss_dssp             ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred             cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhc-CCCCcCccccccccccccccchhhHHHHhcccccccccccccc
Confidence            56789999999999999999966 469999999984 89999999999977 99999999999999999999999 6999


Q ss_pred             HHHHHHH-hcCCCCcEEEeecee--cCHHHHHHHHHhCCCCcEEEecCCC-Cc-hhHhHHHHHhHhhh--ccCCCCCCCC
Q 035790           90 AALRSGL-HHYYNMRFLWMSSCR--LTRQGCQEIAQAMPRLVVEVIRSDD-EE-ETDNYVETLYMYRS--LEGPRHDAPK  162 (198)
Q Consensus        90 ~~l~~i~-~~~~~L~~L~L~~c~--iTd~gl~~La~~~p~L~~~~i~~~~-~~-~~~~~~~~~~~y~s--l~g~r~d~p~  162 (198)
                      +++..++ ..+++|++|++++|.  +++.++..++..||+|+...+.++. .+ .......++...+.  |++-....+.
T Consensus       137 ~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~  216 (284)
T d2astb2         137 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  216 (284)
T ss_dssp             HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             ccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChH
Confidence            9987654 567899999999984  9999999999999999988887652 21 22223344433333  3443344444


Q ss_pred             cceeecccCCcccccccccC
Q 035790          163 FVTILRIIKPKLMLVQIKFA  182 (198)
Q Consensus       163 ~v~~l~~~~~~~~~l~~~~~  182 (198)
                      .+..| ..|++|..|+++-.
T Consensus       217 ~l~~L-~~~~~L~~L~l~~~  235 (284)
T d2astb2         217 TLLEL-GEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGG-GGCTTCCEEECTTS
T ss_pred             HHHHH-hcCCCCCEEeeeCC
Confidence            44444 34677888877654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.8e-17  Score=135.24  Aligned_cols=161  Identities=16%  Similarity=0.129  Sum_probs=117.5

Q ss_pred             CcHHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHH-HHhcCCCCceEEecCC--C
Q 035790           13 PMDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKY-VLEGCPKLQKLEIRDS--P   86 (198)
Q Consensus        13 ~~D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~-i~~~C~~L~~L~L~~c--~   86 (198)
                      .+|.++.++. .+++|++|++++  .+||.++..|++.|++|++|++++|.. +|+++.. +++.|++|++|++++|  .
T Consensus        83 l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  161 (284)
T d2astb2          83 LSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN  161 (284)
T ss_dssp             CCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred             CCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccc
Confidence            4678888875 588999999954  569999999998899999999999877 8888854 5566789999999987  4


Q ss_pred             CChHHHHHHHhcCCCCcEEEeecee-cCHHHHHHHHHhCCCCcEEEecCC-CC-chhHhHHHHHhHhhhccCCCCCCCCc
Q 035790           87 FGDAALRSGLHHYYNMRFLWMSSCR-LTRQGCQEIAQAMPRLVVEVIRSD-DE-EETDNYVETLYMYRSLEGPRHDAPKF  163 (198)
Q Consensus        87 ~tD~~l~~i~~~~~~L~~L~L~~c~-iTd~gl~~La~~~p~L~~~~i~~~-~~-~~~~~~~~~~~~y~sl~g~r~d~p~~  163 (198)
                      ++|.++..++.+|++|++|++++|. +|++++..++ .+|+|+...+..+ +. +.......++....+|.-.--..+..
T Consensus       162 i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~  240 (284)
T d2astb2         162 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT  240 (284)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTC
T ss_pred             cccccccccccccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHH
Confidence            8999999888899999999999987 9999888887 5899988888764 22 11122234444444432222234445


Q ss_pred             ceeecccCCccc
Q 035790          164 VTILRIIKPKLM  175 (198)
Q Consensus       164 v~~l~~~~~~~~  175 (198)
                      +..+...|++|.
T Consensus       241 l~~l~~~lp~L~  252 (284)
T d2astb2         241 LQLLKEALPHLQ  252 (284)
T ss_dssp             HHHHHHHSTTSE
T ss_pred             HHHHHHhCcccc
Confidence            555555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.7e-12  Score=108.90  Aligned_cols=114  Identities=18%  Similarity=0.210  Sum_probs=99.0

Q ss_pred             CCCcHHHHHHHHhhCCCCceeEecC-CCCHHHHHHHH---hcCCCCcEEEeeccCCChHHHHHHHhcC----CCCceEEe
Q 035790           11 GEPMDEGFGAIVRNCRKLTRLAVSG-LLTDRAFGYIG---KYGKLIRTLSVAFAGDSDMGLKYVLEGC----PKLQKLEI   82 (198)
Q Consensus        11 ~~~~D~g~~ai~~~c~~L~~L~L~g-~lTD~~L~~I~---~~~~~L~~L~L~~c~~tD~gl~~i~~~C----~~L~~L~L   82 (198)
                      .+++|.++..++..+++|+.|+|++ .+||++++.|+   +.+++|++|+|+++..+|.|+..+++..    .+|++|++
T Consensus        12 ~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L   91 (460)
T d1z7xw1          12 EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL   91 (460)
T ss_dssp             CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEEC
T ss_pred             CcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEEC
Confidence            4688999999999999999999944 46999998887   5789999999999888999999998753    57999999


Q ss_pred             cCCCCChHHHHHHH---hcCCCCcEEEeeceecCHHHHHHHHHhC
Q 035790           83 RDSPFGDAALRSGL---HHYYNMRFLWMSSCRLTRQGCQEIAQAM  124 (198)
Q Consensus        83 ~~c~~tD~~l~~i~---~~~~~L~~L~L~~c~iTd~gl~~La~~~  124 (198)
                      ++|.++|.++..++   ..+++|++|++++|.+++.|+..+....
T Consensus        92 ~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l  136 (460)
T d1z7xw1          92 QNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL  136 (460)
T ss_dssp             TTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             CCCCccccccccccchhhccccccccccccccchhhhhhhhhhcc
Confidence            99999998876654   5789999999999999999988887654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.5e-12  Score=106.94  Aligned_cols=110  Identities=18%  Similarity=0.300  Sum_probs=96.0

Q ss_pred             CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHH---hcCCCCceEEecCCCCChHHHHHHHhc---
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVL---EGCPKLQKLEIRDSPFGDAALRSGLHH---   98 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~---~~C~~L~~L~L~~c~~tD~~l~~i~~~---   98 (198)
                      ++|+.|++++ .+||.++..+...++++++|+|.+|+.+|+|+..|+   +.|++|++|+|++|.|+|.++..++..   
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            5799999954 679999999988999999999999988999988776   679999999999999999999988764   


Q ss_pred             -CCCCcEEEeeceecCHHHHHHHHH---hCCCCcEEEecCC
Q 035790           99 -YYNMRFLWMSSCRLTRQGCQEIAQ---AMPRLVVEVIRSD  135 (198)
Q Consensus        99 -~~~L~~L~L~~c~iTd~gl~~La~---~~p~L~~~~i~~~  135 (198)
                       ..+|++|+|++|.+|+.|+..++.   .++.|+...+..+
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccc
Confidence             357999999999999999888875   4678887777665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.26  E-value=1e-10  Score=89.40  Aligned_cols=122  Identities=11%  Similarity=0.061  Sum_probs=102.1

Q ss_pred             cHHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHh---cCCCCcEEEeeccCCChHHHHHHH---hcCCCCceEEecCC
Q 035790           14 MDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGK---YGKLIRTLSVAFAGDSDMGLKYVL---EGCPKLQKLEIRDS   85 (198)
Q Consensus        14 ~D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~---~~~~L~~L~L~~c~~tD~gl~~i~---~~C~~L~~L~L~~c   85 (198)
                      .|+.+..+..++++|++|+|++  .++++++..+++   .+++|++|+|++|..+++|+.+++   +..+.|+.|++++|
T Consensus         5 i~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_           5 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            4677888989999999999965  479999999886   678999999999988999988775   45799999999999


Q ss_pred             CCChHHHHHHH---hcCCCCcEEEeece--ecCHHHHHHHHH---hCCCCcEEEecCC
Q 035790           86 PFGDAALRSGL---HHYYNMRFLWMSSC--RLTRQGCQEIAQ---AMPRLVVEVIRSD  135 (198)
Q Consensus        86 ~~tD~~l~~i~---~~~~~L~~L~L~~c--~iTd~gl~~La~---~~p~L~~~~i~~~  135 (198)
                      .++++|+..++   .++++|+.++|..+  .++++|..+|+.   .++.|....+.-.
T Consensus        85 ~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          85 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             cccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            99999988765   67788998777654  599999888876   6788877766543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.22  E-value=6.6e-11  Score=91.04  Aligned_cols=120  Identities=15%  Similarity=0.120  Sum_probs=98.1

Q ss_pred             cHHHHHHHHhhCCCCceeEecC--CCCHHHHHHHHh---cCCCCcEEEeeccCCChHHHHHHH---hcCCCCceEEecCC
Q 035790           14 MDEGFGAIVRNCRKLTRLAVSG--LLTDRAFGYIGK---YGKLIRTLSVAFAGDSDMGLKYVL---EGCPKLQKLEIRDS   85 (198)
Q Consensus        14 ~D~g~~ai~~~c~~L~~L~L~g--~lTD~~L~~I~~---~~~~L~~L~L~~c~~tD~gl~~i~---~~C~~L~~L~L~~c   85 (198)
                      .|+.+..|...+++|++|+|++  .++++++..|++   ..++|++|+|++|..+|.|+.+++   +.++.|++|+|++|
T Consensus         3 v~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n   82 (167)
T d1pgva_           3 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN   82 (167)
T ss_dssp             HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh
Confidence            4677899999999999999965  479999888765   567899999999988998887765   45799999999999


Q ss_pred             CCChHHHHHHH---hcCCCCcEEEeecee---cCHHHHHHHHH---hCCCCcEEEec
Q 035790           86 PFGDAALRSGL---HHYYNMRFLWMSSCR---LTRQGCQEIAQ---AMPRLVVEVIR  133 (198)
Q Consensus        86 ~~tD~~l~~i~---~~~~~L~~L~L~~c~---iTd~gl~~La~---~~p~L~~~~i~  133 (198)
                      .|+++|+..++   ...++|++|+|++++   ++++|...++.   ..+.|....+.
T Consensus        83 ~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~  139 (167)
T d1pgva_          83 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS  139 (167)
T ss_dssp             BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCc
Confidence            99999987764   566789999999875   77888776665   46777655544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.22  E-value=1.7e-10  Score=96.77  Aligned_cols=123  Identities=11%  Similarity=0.175  Sum_probs=88.2

Q ss_pred             CcHHHHHHH---HhhCCCCceeEecC-CCCHHHHHHH----HhcCCCCcEEEeeccCCChHHHHHHH---hcCCCCceEE
Q 035790           13 PMDEGFGAI---VRNCRKLTRLAVSG-LLTDRAFGYI----GKYGKLIRTLSVAFAGDSDMGLKYVL---EGCPKLQKLE   81 (198)
Q Consensus        13 ~~D~g~~ai---~~~c~~L~~L~L~g-~lTD~~L~~I----~~~~~~L~~L~L~~c~~tD~gl~~i~---~~C~~L~~L~   81 (198)
                      +.++++..+   ++.++.|+.|++++ .++++++..+    ...+++|+.|+|+++..++.|+..++   ..|++|++|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             ccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            455555443   45678888888844 4577765442    23578888888888877787776665   5678888888


Q ss_pred             ecCCCCChHHHHHHHh-----cCCCCcEEEeeceecCHHHHHHHHH----hCCCCcEEEecCC
Q 035790           82 IRDSPFGDAALRSGLH-----HYYNMRFLWMSSCRLTRQGCQEIAQ----AMPRLVVEVIRSD  135 (198)
Q Consensus        82 L~~c~~tD~~l~~i~~-----~~~~L~~L~L~~c~iTd~gl~~La~----~~p~L~~~~i~~~  135 (198)
                      |++|.++|.|+..++.     ..+.|++|+|++|.++++|+..+++    .++.|+...+.++
T Consensus       250 Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             hhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            8888888888777653     2356888888888888888776665    4677887777664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.11  E-value=5.8e-10  Score=85.61  Aligned_cols=97  Identities=11%  Similarity=0.172  Sum_probs=81.6

Q ss_pred             HHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHh---cCCCCceEEecCCCCChHHHHHHH---hcCCCCcEEEeecee
Q 035790           39 DRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLE---GCPKLQKLEIRDSPFGDAALRSGL---HHYYNMRFLWMSSCR  111 (198)
Q Consensus        39 D~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~---~C~~L~~L~L~~c~~tD~~l~~i~---~~~~~L~~L~L~~c~  111 (198)
                      |+.++.|....++|++|+|+++.. +++|+..++.   .++.|++|+|++|.++|+++..++   ...+.|++|+|++|.
T Consensus         4 ~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_           4 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            567899999999999999998754 9999887764   578899999999999999876653   578899999999999


Q ss_pred             cCHHHHHHHHHhC---CCCcEEEecCC
Q 035790          112 LTRQGCQEIAQAM---PRLVVEVIRSD  135 (198)
Q Consensus       112 iTd~gl~~La~~~---p~L~~~~i~~~  135 (198)
                      ++++|+..|+...   +.|+...+..+
T Consensus        84 i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          84 LTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            9999999998776   45777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.06  E-value=2.5e-09  Score=81.39  Aligned_cols=97  Identities=13%  Similarity=0.074  Sum_probs=82.6

Q ss_pred             HHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHh---cCCCCceEEecCCCCChHHHHHHH---hcCCCCcEEEeecee
Q 035790           39 DRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLE---GCPKLQKLEIRDSPFGDAALRSGL---HHYYNMRFLWMSSCR  111 (198)
Q Consensus        39 D~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~---~C~~L~~L~L~~c~~tD~~l~~i~---~~~~~L~~L~L~~c~  111 (198)
                      |+.++.+....++|++|+|.++.. ++.|+..+++   .++.|++|++++|.++++++..++   .+.++|+.|++++|.
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            678999999999999999998654 9999988875   689999999999999999887763   577899999999999


Q ss_pred             cCHHHHHHHHHh---CCCCcEEEecCC
Q 035790          112 LTRQGCQEIAQA---MPRLVVEVIRSD  135 (198)
Q Consensus       112 iTd~gl~~La~~---~p~L~~~~i~~~  135 (198)
                      ++++|+..++..   .+.|+...+.-+
T Consensus        86 ~~~~g~~~l~~~l~~~~~L~~l~L~l~  112 (166)
T d1io0a_          86 ISGSGILALVEALQSNTSLIELRIDNQ  112 (166)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCC
T ss_pred             ccchhHHHHHHHHHhCccccEEeeccC
Confidence            999999998865   466776556533

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.03  E-value=1.2e-09  Score=91.53  Aligned_cols=110  Identities=20%  Similarity=0.202  Sum_probs=88.8

Q ss_pred             CCcHHHHHHH----HhhCCCCceeEecC-CCCHHHHHHHH---hcCCCCcEEEeeccCCChHHHHHHHhc-----CCCCc
Q 035790           12 EPMDEGFGAI----VRNCRKLTRLAVSG-LLTDRAFGYIG---KYGKLIRTLSVAFAGDSDMGLKYVLEG-----CPKLQ   78 (198)
Q Consensus        12 ~~~D~g~~ai----~~~c~~L~~L~L~g-~lTD~~L~~I~---~~~~~L~~L~L~~c~~tD~gl~~i~~~-----C~~L~   78 (198)
                      ++.++|+..+    +..+++|++|+|++ .+++.+...|+   ..+++|++|+|++|..+|.|+..+++.     .+.|+
T Consensus       197 ~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~  276 (344)
T d2ca6a1         197 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ  276 (344)
T ss_dssp             CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred             cccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCC
Confidence            5778887654    35689999999965 56898877776   478999999999999999999988753     36799


Q ss_pred             eEEecCCCCChHHHHHHH----hcCCCCcEEEeeceecCH--HHHHHHH
Q 035790           79 KLEIRDSPFGDAALRSGL----HHYYNMRFLWMSSCRLTR--QGCQEIA  121 (198)
Q Consensus        79 ~L~L~~c~~tD~~l~~i~----~~~~~L~~L~L~~c~iTd--~gl~~La  121 (198)
                      +|++++|.++++++..++    .++++|++|+|+++++++  .++..+.
T Consensus       277 ~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~~~~~~l~  325 (344)
T d2ca6a1         277 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR  325 (344)
T ss_dssp             EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHH
T ss_pred             EEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcchHHHHHH
Confidence            999999999999977764    368899999999999544  3555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=8.9e-09  Score=78.54  Aligned_cols=104  Identities=12%  Similarity=0.077  Sum_probs=56.9

Q ss_pred             hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCCh-HHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSD-MGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD-~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ++.+|++|+|++ .++.-  ..+...+++|+.|+|+++..++ ++    ..++++|++|++++|.++.-.- .+...+++
T Consensus        16 n~~~lr~L~L~~n~I~~i--~~~~~~l~~L~~L~Ls~N~i~~l~~----~~~l~~L~~L~ls~N~i~~l~~-~~~~~l~~   88 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKLDG----FPLLRRLKTLLVNNNRICRIGE-GLDQALPD   88 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEECC----CCCCSSCCEEECCSSCCCEECS-CHHHHCTT
T ss_pred             CcCcCcEEECCCCCCCcc--CccccccccCCEEECCCCCCCccCC----cccCcchhhhhcccccccCCCc-cccccccc
Confidence            355677777754 22221  2233456677777777766532 12    2456777777777776544211 12245667


Q ss_pred             CcEEEeeceecCHH-HHHHHHHhCCCCcEEEecCC
Q 035790          102 MRFLWMSSCRLTRQ-GCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       102 L~~L~L~~c~iTd~-gl~~La~~~p~L~~~~i~~~  135 (198)
                      |++|++++|++++- .+..+. .+|+|+...+..+
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~-~l~~L~~L~l~~N  122 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLA-SLKSLTYLCILRN  122 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGG-GCTTCCEEECCSS
T ss_pred             cccceeccccccccccccccc-cccccchhhcCCC
Confidence            77777777765432 333333 5677766666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.27  E-value=1.6e-08  Score=79.48  Aligned_cols=103  Identities=18%  Similarity=0.213  Sum_probs=75.2

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCCh-HHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSD-MGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD-~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ..+++|++|+|++ .+++  +..+. .+++|+.|+|++|..++ .++.   ..+++|+.|++++|.+++-  .. ..+++
T Consensus        45 ~~L~~L~~L~Ls~n~I~~--i~~l~-~l~~L~~L~Ls~N~i~~i~~~~---~~~~~L~~L~l~~N~i~~l--~~-~~~l~  115 (198)
T d1m9la_          45 STLKACKHLALSTNNIEK--ISSLS-GMENLRILSLGRNLIKKIENLD---AVADTLEELWISYNQIASL--SG-IEKLV  115 (198)
T ss_dssp             HHTTTCCEEECSEEEESC--CCCHH-HHTTCCEEECCEEEECSCSSHH---HHHHHCCEEECSEEECCCH--HH-HHHHH
T ss_pred             hcccccceeECcccCCCC--ccccc-CCccccChhhcccccccccccc---ccccccccccccccccccc--cc-ccccc
Confidence            4578999999954 2343  12344 57899999999987643 2333   2355899999999988863  22 45688


Q ss_pred             CCcEEEeeceecCHH-HHHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQ-GCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~-gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|+.|++++|++++- .+..+. .+|+|+...+.++
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~-~l~~L~~L~L~~N  150 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLA-ALDKLEDLLLAGN  150 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHT-TTTTCSEEEECSS
T ss_pred             cccccccccchhcccccccccc-CCCccceeecCCC
Confidence            999999999998764 455555 6999998888875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=6.9e-08  Score=73.43  Aligned_cols=104  Identities=13%  Similarity=0.158  Sum_probs=74.6

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChH-HHHHHHhcC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDA-ALRSGLHHY   99 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~-~l~~i~~~~   99 (198)
                      ...+++|++|+|++ .+++  +..+ ..+++|++|++++|..+.-.- .+..++++|++|++++|.+++- .+.. ...+
T Consensus        37 ~~~l~~L~~L~Ls~N~i~~--l~~~-~~l~~L~~L~ls~N~i~~l~~-~~~~~l~~L~~L~L~~N~i~~~~~l~~-l~~l  111 (162)
T d1a9na_          37 GATLDQFDAIDFSDNEIRK--LDGF-PLLRRLKTLLVNNNRICRIGE-GLDQALPDLTELILTNNSLVELGDLDP-LASL  111 (162)
T ss_dssp             GGGTTCCSEEECCSSCCCE--ECCC-CCCSSCCEEECCSSCCCEECS-CHHHHCTTCCEEECCSCCCCCGGGGGG-GGGC
T ss_pred             ccccccCCEEECCCCCCCc--cCCc-ccCcchhhhhcccccccCCCc-cccccccccccceeccccccccccccc-cccc
Confidence            45789999999965 3343  1223 368999999999998843211 1345699999999999988763 3333 4689


Q ss_pred             CCCcEEEeeceecCHH-HH-HHHHHhCCCCcEE
Q 035790          100 YNMRFLWMSSCRLTRQ-GC-QEIAQAMPRLVVE  130 (198)
Q Consensus       100 ~~L~~L~L~~c~iTd~-gl-~~La~~~p~L~~~  130 (198)
                      ++|++|++++|++++. +. ..+...+|+|+..
T Consensus       112 ~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~L  144 (162)
T d1a9na_         112 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL  144 (162)
T ss_dssp             TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEE
T ss_pred             cccchhhcCCCccccccchHHHHHHHCCCcCee
Confidence            9999999999996543 22 2345679999754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.17  E-value=2.2e-07  Score=72.65  Aligned_cols=103  Identities=14%  Similarity=0.186  Sum_probs=72.5

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHH-HHHHHhcC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAA-LRSGLHHY   99 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~-l~~i~~~~   99 (198)
                      +.++++|++|+|++ .+++  +..+....++|++|+++++..++  +..+ .++++|+.|++++|.|++-. +.. ...+
T Consensus        66 l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i~~--l~~~-~~l~~L~~L~L~~N~i~~~~~~~~-l~~l  139 (198)
T d1m9la_          66 LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS--LSGI-EKLVNLRVLYMSNNKITNWGEIDK-LAAL  139 (198)
T ss_dssp             HHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEECCC--HHHH-HHHHHSSEEEESEEECCCHHHHHH-HTTT
T ss_pred             ccCCccccChhhccccccc--ccccccccccccccccccccccc--cccc-cccccccccccccchhcccccccc-ccCC
Confidence            35789999999954 2343  11122235689999999998754  2333 35789999999999998754 444 5789


Q ss_pred             CCCcEEEeeceecCHHH---------HHHHHHhCCCCcEE
Q 035790          100 YNMRFLWMSSCRLTRQG---------CQEIAQAMPRLVVE  130 (198)
Q Consensus       100 ~~L~~L~L~~c~iTd~g---------l~~La~~~p~L~~~  130 (198)
                      ++|++|+|++|+++...         ...+...+|+|+..
T Consensus       140 ~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~L  179 (198)
T d1m9la_         140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL  179 (198)
T ss_dssp             TTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEE
T ss_pred             CccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEe
Confidence            99999999999854432         12345679998754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.05  E-value=3.4e-07  Score=66.55  Aligned_cols=102  Identities=17%  Similarity=0.215  Sum_probs=69.5

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChH-HHHHHHhcCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDA-ALRSGLHHYY  100 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~-~l~~i~~~~~  100 (198)
                      ..+++|++|++++ .+++-- ..++ .+++|+.|+++++..++  +..+ ..+++|++|++++|.|++- ++.. ...++
T Consensus        17 ~~l~~L~~L~ls~N~l~~lp-~~~~-~l~~L~~L~l~~N~i~~--l~~~-~~l~~L~~L~l~~N~i~~~~~~~~-l~~~~   90 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLRALP-PALA-ALRCLEVLQASDNALEN--VDGV-ANLPRLQELLLCNNRLQQSAAIQP-LVSCP   90 (124)
T ss_dssp             GGGTTCCEEECCSSCCCCCC-GGGG-GCTTCCEEECCSSCCCC--CGGG-TTCSSCCEEECCSSCCCSSSTTGG-GGGCT
T ss_pred             ccCCCCCEEECCCCccCcch-hhhh-hhhcccccccccccccc--cCcc-ccccccCeEECCCCccCCCCCchh-hcCCC
Confidence            5678899999954 334210 1244 58899999999887733  1223 4689999999999887653 2333 46789


Q ss_pred             CCcEEEeeceecCHH-H-HHHHHHhCCCCcEE
Q 035790          101 NMRFLWMSSCRLTRQ-G-CQEIAQAMPRLVVE  130 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~-g-l~~La~~~p~L~~~  130 (198)
                      +|++|+++++++++. + ...+....|+|+..
T Consensus        91 ~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          91 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            999999999886543 2 34566778888654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.8e-06  Score=65.11  Aligned_cols=88  Identities=14%  Similarity=0.241  Sum_probs=64.2

Q ss_pred             HHHHHHhcCCCCcEEEeeccCCCh-HHHHHHHhcCCCCceEEecCCCCChH-HHHHHHhcCCCCcEEEeeceecC-----
Q 035790           41 AFGYIGKYGKLIRTLSVAFAGDSD-MGLKYVLEGCPKLQKLEIRDSPFGDA-ALRSGLHHYYNMRFLWMSSCRLT-----  113 (198)
Q Consensus        41 ~L~~I~~~~~~L~~L~L~~c~~tD-~gl~~i~~~C~~L~~L~L~~c~~tD~-~l~~i~~~~~~L~~L~L~~c~iT-----  113 (198)
                      .+..+...+++|++|+|+++..++ .++......|++|+.|++++|.|++- .+.. . +..+|+.|++++++++     
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTSTTSSSSSS
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCCCcCcCccc
Confidence            345566789999999999998844 45555567799999999999988763 3333 2 3457999999999854     


Q ss_pred             H-HHHHHHHHhCCCCcEE
Q 035790          114 R-QGCQEIAQAMPRLVVE  130 (198)
Q Consensus       114 d-~gl~~La~~~p~L~~~  130 (198)
                      + .-...+.+.+|+|++.
T Consensus       134 ~~~y~~~i~~~~P~L~~L  151 (162)
T d1koha1         134 QSTYISAIRERFPKLLRL  151 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEE
T ss_pred             chhHHHHHHHHCCCCCEE
Confidence            2 3455677788988744

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=7.4e-06  Score=61.62  Aligned_cols=87  Identities=16%  Similarity=0.122  Sum_probs=64.1

Q ss_pred             HHHHHhhCCCCceeEecC-CCCH-HHHHHHHhcCCCCcEEEeeccCCCh-HHHHHHHhcCCCCceEEecCCCCCh-----
Q 035790           18 FGAIVRNCRKLTRLAVSG-LLTD-RAFGYIGKYGKLIRTLSVAFAGDSD-MGLKYVLEGCPKLQKLEIRDSPFGD-----   89 (198)
Q Consensus        18 ~~ai~~~c~~L~~L~L~g-~lTD-~~L~~I~~~~~~L~~L~L~~c~~tD-~gl~~i~~~C~~L~~L~L~~c~~tD-----   89 (198)
                      +..+...|++|+.|+|++ .+++ ..+......+++|+.|+|+++..++ ..+.. .. ..+|++|++.++++++     
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l~-~~~L~~L~L~~Npl~~~~~~~  134 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IK-GLKLEELWLDGNSLSDTFRDQ  134 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-HT-TCCCSSCCCTTSTTSSSSSSH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-hh-ccccceeecCCCCcCcCcccc
Confidence            345557899999999966 4455 3455555679999999999999843 44443 34 4579999999998753     


Q ss_pred             -HHHHHHHhcCCCCcEEE
Q 035790           90 -AALRSGLHHYYNMRFLW  106 (198)
Q Consensus        90 -~~l~~i~~~~~~L~~L~  106 (198)
                       .-...+...+|+|+.||
T Consensus       135 ~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         135 STYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET
T ss_pred             hhHHHHHHHHCCCCCEEC
Confidence             23456678999999986

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.61  E-value=4.6e-06  Score=64.92  Aligned_cols=101  Identities=17%  Similarity=0.237  Sum_probs=55.2

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..+++|++|++++ .+++  +..+. .+++|+.|++..+..++  +..+ .++++|+.++++++.+++..   ...++++
T Consensus        87 ~~l~~L~~L~l~~n~i~~--l~~l~-~l~~L~~L~l~~~~~~~--~~~l-~~l~~l~~l~~~~n~l~~~~---~~~~l~~  157 (210)
T d1h6ta2          87 ANLKNLGWLFLDENKVKD--LSSLK-DLKKLKSLSLEHNGISD--INGL-VHLPQLESLYLGNNKITDIT---VLSRLTK  157 (210)
T ss_dssp             TTCTTCCEEECCSSCCCC--GGGGT-TCTTCCEEECTTSCCCC--CGGG-GGCTTCCEEECCSSCCCCCG---GGGGCTT
T ss_pred             ccCccccccccccccccc--ccccc-ccccccccccccccccc--cccc-cccccccccccccccccccc---ccccccc
Confidence            4678888888854 3454  22333 46788888888776632  1112 34566666666666555432   1234556


Q ss_pred             CcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |+.++++++++++  +..+ ..+++|+...+..+
T Consensus       158 L~~l~l~~n~l~~--i~~l-~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         158 LDTLSLEDNQISD--IVPL-AGLTKLQNLYLSKN  188 (210)
T ss_dssp             CSEEECCSSCCCC--CGGG-TTCTTCCEEECCSS
T ss_pred             ccccccccccccc--cccc-cCCCCCCEEECCCC
Confidence            6666666665432  1112 24555555555443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.47  E-value=1.4e-05  Score=61.42  Aligned_cols=101  Identities=18%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHY   99 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~   99 (198)
                      +.++++|++|++++ .++.  +..++ .+++|+.|+++++.. ...+    ..++++|+.|++++|.+..-.  . ...+
T Consensus        80 l~~l~~L~~L~l~~n~~~~--~~~l~-~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~--~-l~~~  149 (199)
T d2omxa2          80 LKNLTKLVDILMNNNQIAD--ITPLA-NLTNLTGLTLFNNQITDIDP----LKNLTNLNRLELSSNTISDIS--A-LSGL  149 (199)
T ss_dssp             GTTCTTCCEEECCSSCCCC--CGGGT-TCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCG--G-GTTC
T ss_pred             ccCCccccccccccccccc--ccccc-cccccccccccccccccccc----cchhhhhHHhhhhhhhhcccc--c-cccc
Confidence            46789999999954 2222  12243 688999999988877 3222    246889999999988765422  2 4578


Q ss_pred             CCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          100 YNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       100 ~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      ++|++|++.+|++++-  ..+ ..+++|+...+..+
T Consensus       150 ~~L~~L~l~~n~l~~l--~~l-~~l~~L~~L~ls~N  182 (199)
T d2omxa2         150 TSLQQLNFSSNQVTDL--KPL-ANLTTLERLDISSN  182 (199)
T ss_dssp             TTCSEEECCSSCCCCC--GGG-TTCTTCCEEECCSS
T ss_pred             ccccccccccccccCC--ccc-cCCCCCCEEECCCC
Confidence            8899999999886552  223 36788888877765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.47  E-value=1.7e-05  Score=61.86  Aligned_cols=98  Identities=16%  Similarity=0.155  Sum_probs=66.9

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCCh-HHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSD-MGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD-~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ...+.++.+.++. .+...  ..+ ..+++|+.|+++++..++ .+   + .++++|++|++++|.+++-  .. ..+++
T Consensus       126 ~~~~~~~~l~~~~~~~~~~--~~~-~~~~~L~~L~l~~n~~~~~~~---l-~~l~~L~~L~Ls~n~l~~l--~~-l~~l~  195 (227)
T d1h6ua2         126 AGLSNLQVLYLDLNQITNI--SPL-AGLTNLQYLSIGNAQVSDLTP---L-ANLSKLTTLKADDNKISDI--SP-LASLP  195 (227)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGG-GGCTTCCEEECCSSCCCCCGG---G-TTCTTCCEEECCSSCCCCC--GG-GGGCT
T ss_pred             ccccchhhhhchhhhhchh--hhh-ccccccccccccccccccchh---h-cccccceecccCCCccCCC--hh-hcCCC
Confidence            3567888888743 22221  112 357899999998887743 22   2 5689999999999987762  22 46789


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhCCCCcEEEec
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIR  133 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~  133 (198)
                      +|++|+|++|++|+-  ..+ ..+++|+...+.
T Consensus       196 ~L~~L~Ls~N~lt~i--~~l-~~l~~L~~L~ls  225 (227)
T d1h6ua2         196 NLIEVHLKNNQISDV--SPL-ANTSNLFIVTLT  225 (227)
T ss_dssp             TCCEEECTTSCCCBC--GGG-TTCTTCCEEEEE
T ss_pred             CCCEEECcCCcCCCC--ccc-ccCCCCCEEEee
Confidence            999999999987752  223 478888876664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.42  E-value=2.1e-05  Score=64.57  Aligned_cols=100  Identities=21%  Similarity=0.259  Sum_probs=70.4

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      ..++.++.+.+.. .+++  +..+ ..+++++.|+++++..++  +.. ...+++|++|++++|.+++-  .. ..++++
T Consensus       282 ~~~~~l~~l~~~~n~l~~--~~~~-~~~~~l~~L~ls~n~l~~--l~~-l~~l~~L~~L~L~~n~l~~l--~~-l~~l~~  352 (384)
T d2omza2         282 AGLTALTNLELNENQLED--ISPI-SNLKNLTYLTLYFNNISD--ISP-VSSLTKLQRLFFANNKVSDV--SS-LANLTN  352 (384)
T ss_dssp             TTCTTCSEEECCSSCCSC--CGGG-GGCTTCSEEECCSSCCSC--CGG-GGGCTTCCEEECCSSCCCCC--GG-GGGCTT
T ss_pred             cccccccccccccccccc--cccc-chhcccCeEECCCCCCCC--Ccc-cccCCCCCEEECCCCCCCCC--hh-HcCCCC
Confidence            4678888888854 2233  2223 468899999999887754  222 35699999999999988763  23 467999


Q ss_pred             CcEEEeeceecCHHHHHHHHHhCCCCcEEEecC
Q 035790          102 MRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRS  134 (198)
Q Consensus       102 L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~  134 (198)
                      |++|++++|++++  +..+ ..+++|+...+..
T Consensus       353 L~~L~l~~N~l~~--l~~l-~~l~~L~~L~L~~  382 (384)
T d2omza2         353 INWLSAGHNQISD--LTPL-ANLTRITQLGLND  382 (384)
T ss_dssp             CCEEECCSSCCCB--CGGG-TTCTTCSEEECCC
T ss_pred             CCEEECCCCcCCC--Chhh-ccCCCCCEeeCCC
Confidence            9999999998764  2223 4678888777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.35  E-value=2.8e-05  Score=59.62  Aligned_cols=100  Identities=17%  Similarity=0.121  Sum_probs=73.3

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ..+++|++|++++ .+++-  ..++ .+++|++|+++++.. .-.+    ..++++|+.|++++|.+....   ...+++
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~--~~l~-~l~~L~~L~l~~n~~~~~~~----l~~l~~L~~L~l~~~~~~~~~---~~~~l~  128 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDI--TPLK-NLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQITDID---PLKNLT  128 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCC--GGGT-TCTTCCEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCCCCG---GGTTCT
T ss_pred             ccCCCcCcCccccccccCc--cccc-CCcccccccccccccccccc----ccccccccccccccccccccc---ccchhh
Confidence            5799999999965 34542  2344 689999999999887 3222    357999999999999654421   145799


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|+.|++++|+++.  +..+ ..++.|+...+..+
T Consensus       129 ~L~~L~l~~n~l~~--~~~l-~~~~~L~~L~l~~n  160 (199)
T d2omxa2         129 NLNRLELSSNTISD--ISAL-SGLTSLQQLNFSSN  160 (199)
T ss_dssp             TCSEEECCSSCCCC--CGGG-TTCTTCSEEECCSS
T ss_pred             hhHHhhhhhhhhcc--cccc-cccccccccccccc
Confidence            99999999998654  2223 36888888777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.33  E-value=2.4e-05  Score=56.34  Aligned_cols=97  Identities=18%  Similarity=0.209  Sum_probs=70.4

Q ss_pred             ceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHH-HHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEE
Q 035790           29 TRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGL-KYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLW  106 (198)
Q Consensus        29 ~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl-~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~  106 (198)
                      |.|+|++ .+|+  +..+. .+++|++|+++++..++  + ..+ .++++|+.|++++|.|++-  .. ..++++|++|+
T Consensus         1 R~L~Ls~n~l~~--l~~l~-~l~~L~~L~ls~N~l~~--lp~~~-~~l~~L~~L~l~~N~i~~l--~~-~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKDLTV--LCHLE-QLLLVTHLDLSHNRLRA--LPPAL-AALRCLEVLQASDNALENV--DG-VANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSCCSS--CCCGG-GGTTCCEEECCSSCCCC--CCGGG-GGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEE
T ss_pred             CEEEcCCCCCCC--Ccccc-cCCCCCEEECCCCccCc--chhhh-hhhhccccccccccccccc--Cc-cccccccCeEE
Confidence            4677754 3342  23454 68999999999988742  2 123 4699999999999988753  22 46899999999


Q ss_pred             eeceecCHH-HHHHHHHhCCCCcEEEecCC
Q 035790          107 MSSCRLTRQ-GCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       107 L~~c~iTd~-gl~~La~~~p~L~~~~i~~~  135 (198)
                      ++++++++- ++..+ ..+|+|+...+.++
T Consensus        72 l~~N~i~~~~~~~~l-~~~~~L~~L~l~~N  100 (124)
T d1dcea3          72 LCNNRLQQSAAIQPL-VSCPRLVLLNLQGN  100 (124)
T ss_dssp             CCSSCCCSSSTTGGG-GGCTTCCEEECTTS
T ss_pred             CCCCccCCCCCchhh-cCCCCCCEEECCCC
Confidence            999997653 44455 46999998888775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.32  E-value=2.2e-05  Score=64.47  Aligned_cols=102  Identities=11%  Similarity=0.158  Sum_probs=74.6

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ...+++|++|.+++ .++.  +..+ ..++.++.+.+..+..++  +.. ...+++|+.|++++|.+++-.  . ..+++
T Consensus       259 ~~~~~~L~~L~l~~~~l~~--~~~~-~~~~~l~~l~~~~n~l~~--~~~-~~~~~~l~~L~ls~n~l~~l~--~-l~~l~  329 (384)
T d2omza2         259 LSGLTKLTELKLGANQISN--ISPL-AGLTALTNLELNENQLED--ISP-ISNLKNLTYLTLYFNNISDIS--P-VSSLT  329 (384)
T ss_dssp             GTTCTTCSEEECCSSCCCC--CGGG-TTCTTCSEEECCSSCCSC--CGG-GGGCTTCSEEECCSSCCSCCG--G-GGGCT
T ss_pred             ccccccCCEeeccCcccCC--CCcc-cccccccccccccccccc--ccc-cchhcccCeEECCCCCCCCCc--c-cccCC
Confidence            35789999999954 2232  1222 357899999998887643  222 367999999999999887632  2 57899


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|++++|++++  +..+. .+|+|+...+..+
T Consensus       330 ~L~~L~L~~n~l~~--l~~l~-~l~~L~~L~l~~N  361 (384)
T d2omza2         330 KLQRLFFANNKVSD--VSSLA-NLTNINWLSAGHN  361 (384)
T ss_dssp             TCCEEECCSSCCCC--CGGGG-GCTTCCEEECCSS
T ss_pred             CCCEEECCCCCCCC--ChhHc-CCCCCCEEECCCC
Confidence            99999999999775  33444 6899998888765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.29  E-value=4.4e-05  Score=59.33  Aligned_cols=102  Identities=13%  Similarity=0.204  Sum_probs=68.8

Q ss_pred             hhCCCCceeEecCCCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCC
Q 035790           23 RNCRKLTRLAVSGLLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNM  102 (198)
Q Consensus        23 ~~c~~L~~L~L~g~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L  102 (198)
                      .++++|+.|.+++. ....+..+ ...+.++.+.++.+......  . ..++++|++|++++|.+++..  . ..++++|
T Consensus       104 ~~l~~L~~l~l~~~-~~~~~~~~-~~~~~~~~l~~~~~~~~~~~--~-~~~~~~L~~L~l~~n~~~~~~--~-l~~l~~L  175 (227)
T d1h6ua2         104 AGLQSIKTLDLTST-QITDVTPL-AGLSNLQVLYLDLNQITNIS--P-LAGLTNLQYLSIGNAQVSDLT--P-LANLSKL  175 (227)
T ss_dssp             TTCTTCCEEECTTS-CCCCCGGG-TTCTTCCEEECCSSCCCCCG--G-GGGCTTCCEEECCSSCCCCCG--G-GTTCTTC
T ss_pred             cccccccccccccc-cccccchh-ccccchhhhhchhhhhchhh--h-hccccccccccccccccccch--h-hcccccc
Confidence            35777777777442 11111222 25789999999887763211  1 256899999999999776532  1 4678999


Q ss_pred             cEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          103 RFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       103 ~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      ++|++++|++++  +..+ ..+|+|+...+..+
T Consensus       176 ~~L~Ls~n~l~~--l~~l-~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         176 TTLKADDNKISD--ISPL-ASLPNLIEVHLKNN  205 (227)
T ss_dssp             CEEECCSSCCCC--CGGG-GGCTTCCEEECTTS
T ss_pred             eecccCCCccCC--Chhh-cCCCCCCEEECcCC
Confidence            999999998665  2233 47899988888765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.29  E-value=6.6e-05  Score=58.05  Aligned_cols=99  Identities=13%  Similarity=0.155  Sum_probs=67.1

Q ss_pred             CCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCc
Q 035790           25 CRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMR  103 (198)
Q Consensus        25 c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~  103 (198)
                      ..+|++|.+++ .+++  +..| +++++|++|+++++..++  +..+ .++++|+.|++++|.+++-  .. ...+++|+
T Consensus        45 L~~L~~L~l~~~~i~~--l~~l-~~l~~L~~L~L~~n~i~~--l~~~-~~l~~L~~L~l~~n~i~~l--~~-l~~l~~L~  115 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS--VQGI-QYLPNVTKLFLNGNKLTD--IKPL-ANLKNLGWLFLDENKVKDL--SS-LKDLKKLK  115 (210)
T ss_dssp             HHTCCEEECTTSCCCC--CTTG-GGCTTCCEEECCSSCCCC--CGGG-TTCTTCCEEECCSSCCCCG--GG-GTTCTTCC
T ss_pred             hcCccEEECcCCCCCC--chhH-hhCCCCCEEeCCCccccC--cccc-ccCcccccccccccccccc--cc-cccccccc
Confidence            35678888844 2233  1223 468999999999987754  2233 4689999999999988763  22 46788999


Q ss_pred             EEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          104 FLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       104 ~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      .|++++|.+++  +..+ ..++.|+...+...
T Consensus       116 ~L~l~~~~~~~--~~~l-~~l~~l~~l~~~~n  144 (210)
T d1h6ta2         116 SLSLEHNGISD--INGL-VHLPQLESLYLGNN  144 (210)
T ss_dssp             EEECTTSCCCC--CGGG-GGCTTCCEEECCSS
T ss_pred             ccccccccccc--cccc-cccccccccccccc
Confidence            99999988443  1223 35778877776654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=1.5e-05  Score=63.80  Aligned_cols=80  Identities=18%  Similarity=0.080  Sum_probs=48.5

Q ss_pred             CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF  104 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~  104 (198)
                      ++|++|+|++ .++.-....+. .+++|++|+|+++..+.  +..+ ..+++|++|+|++|+++...  ....++++|+.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~-~l~~L~~L~L~~N~l~~--l~~~-~~l~~L~~L~Ls~N~l~~~~--~~~~~l~~L~~  104 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQSLP--LLGQTLPALTV  104 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCSSCCSSCC--CCTTTCTTCCE
T ss_pred             cCCCEEECcCCcCCCcCHHHhh-ccccccccccccccccc--cccc-cccccccccccccccccccc--ccccccccccc
Confidence            4688888854 23322112232 57788888888876542  1112 35778888888888665421  12456777788


Q ss_pred             EEeecee
Q 035790          105 LWMSSCR  111 (198)
Q Consensus       105 L~L~~c~  111 (198)
                      |+++++.
T Consensus       105 L~l~~~~  111 (266)
T d1p9ag_         105 LDVSFNR  111 (266)
T ss_dssp             EECCSSC
T ss_pred             ccccccc
Confidence            8877776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.89  E-value=4.9e-05  Score=61.28  Aligned_cols=106  Identities=14%  Similarity=0.155  Sum_probs=65.5

Q ss_pred             HhhCCCCceeEecCC-CCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSGL-LTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g~-lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ...+++|+.+.+++. ++.-  .  ...+++|+.|+++++..+...... ..+++.++.|++++|.+++-.-.+ ..+++
T Consensus       146 ~~~l~~L~~l~l~~n~l~~l--~--~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~l~~L~~s~n~l~~~~~~~-~~~l~  219 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNITTI--P--QGLPPSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGS-LANTP  219 (305)
T ss_dssp             GGGCTTCCEEECCSSCCCSC--C--SSCCTTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTTT-GGGST
T ss_pred             cccccccCccccccCCcccc--C--cccCCccCEEECCCCcCCCCChhH-hhcccccccccccccccccccccc-ccccc
Confidence            356788888888441 2210  0  123678888888887664332222 356788888888888765533222 35688


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|+|++|+++.-- ..+ ..+|+|++..+..+
T Consensus       220 ~L~~L~L~~N~L~~lp-~~l-~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         220 HLRELHLNNNKLVKVP-GGL-ADHKYIQVVYLHNN  252 (305)
T ss_dssp             TCCEEECCSSCCSSCC-TTT-TTCSSCCEEECCSS
T ss_pred             cceeeecccccccccc-ccc-ccccCCCEEECCCC
Confidence            8888888888744210 112 35778887777764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.73  E-value=4.9e-05  Score=57.93  Aligned_cols=107  Identities=10%  Similarity=0.060  Sum_probs=69.0

Q ss_pred             CCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcE
Q 035790           26 RKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRF  104 (198)
Q Consensus        26 ~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~  104 (198)
                      +++++|+|++ .++...-.......++|++|+|+++..+..... ...+.++|++|++++|.++.-.-. ...++++|++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~-~~~~~~~L~~L~Ls~N~l~~l~~~-~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGENKIKEISNK-MFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSCCCCEECSS-SSTTCTTCCE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccc-ccccccccceeeeccccccccCHH-HHhCCCcccc
Confidence            4799999954 333211112223578999999998876322222 235688999999999976542211 2357899999


Q ss_pred             EEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          105 LWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       105 L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      |+|++++++.---..+ ..+++|+...+...
T Consensus       107 L~L~~N~l~~i~~~~f-~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         107 LNLYDNQISCVMPGSF-EHLNSLTSLNLASN  136 (192)
T ss_dssp             EECCSSCCCEECTTSS-TTCTTCCEEECTTC
T ss_pred             cccCCccccccCHHHh-cCCccccccccccc
Confidence            9999998543111111 35788888877765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0004  Score=55.35  Aligned_cols=110  Identities=11%  Similarity=0.076  Sum_probs=73.5

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ...+++|+.+++++ .++.-.-..+ ..+++|+.|+++++..+.-.-.. ..++++|+.|++++|.+++-.-. ...+++
T Consensus       125 ~~~~~~L~~l~l~~N~l~~i~~~~f-~~~~~L~~L~l~~N~l~~l~~~~-f~~l~~L~~l~l~~N~l~~i~~~-~f~~l~  201 (284)
T d1ozna_         125 FRGLAALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLHQNRVAHVHPH-AFRDLG  201 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTT-TTTTCT
T ss_pred             cchhcccchhhhccccccccChhHh-ccccchhhcccccCcccccchhh-hccccccchhhhhhccccccChh-Hhhhhh
Confidence            35678899999954 3332111222 35789999999998763211122 24799999999999977643322 246789


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|++++++++...-..+ ..++.|+...+..+
T Consensus       202 ~L~~L~l~~N~i~~~~~~~~-~~~~~L~~L~l~~N  235 (284)
T d1ozna_         202 RLMTLYLFANNLSALPTEAL-APLRALQYLRLNDN  235 (284)
T ss_dssp             TCCEEECCSSCCSCCCHHHH-TTCTTCCEEECCSS
T ss_pred             hccccccccccccccccccc-ccccccCEEEecCC
Confidence            99999999998544333333 36888988777764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.29  E-value=0.00013  Score=55.46  Aligned_cols=87  Identities=16%  Similarity=0.154  Sum_probs=59.2

Q ss_pred             hhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           23 RNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        23 ~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      .+.++|++|+|++ .++...-. .....++|+.|+|+++..+.-.-. ...+.++|++|+|++|.++.-.- .....+++
T Consensus        51 ~~l~~L~~L~L~~N~i~~~~~~-~~~~~~~L~~L~Ls~N~l~~l~~~-~F~~l~~L~~L~L~~N~l~~i~~-~~f~~l~~  127 (192)
T d1w8aa_          51 GRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGENKIKEISNK-MFLGLHQLKTLNLYDNQISCVMP-GSFEHLNS  127 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSCCCCEECSS-SSTTCTTCCEEECCSSCCCEECT-TSSTTCTT
T ss_pred             CCCceEeeeecccccccccccc-ccccccccceeeeccccccccCHH-HHhCCCcccccccCCccccccCH-HHhcCCcc
Confidence            5689999999954 22322222 223578999999999876321111 13579999999999997653211 11357899


Q ss_pred             CcEEEeeceec
Q 035790          102 MRFLWMSSCRL  112 (198)
Q Consensus       102 L~~L~L~~c~i  112 (198)
                      |++|+|+++.+
T Consensus       128 L~~l~L~~N~~  138 (192)
T d1w8aa_         128 LTSLNLASNPF  138 (192)
T ss_dssp             CCEEECTTCCB
T ss_pred             ccccccccccc
Confidence            99999999984

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.00029  Score=56.25  Aligned_cols=110  Identities=10%  Similarity=0.064  Sum_probs=69.2

Q ss_pred             HhhCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           22 VRNCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        22 ~~~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      ..++++|+.|+++. .++... .......++|+.+++.++..+.-.-.. ...+++|+.|++++|.++.-.-. ....++
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~l~l~~N~l~~i~~~~-f~~~~~L~~L~l~~N~l~~l~~~-~f~~l~  177 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDT-FRDLGNLTHLFLHGNRISSVPER-AFRGLH  177 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCEECTT-TTTTCT
T ss_pred             hcccccCCEEecCCccccccc-ccccchhcccchhhhccccccccChhH-hccccchhhcccccCcccccchh-hhcccc
Confidence            45788999999954 212111 223335788999999887663221112 35688899999999876532111 235788


Q ss_pred             CCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          101 NMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       101 ~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      +|++|++++++++.-.-..+ ..+++|....+..+
T Consensus       178 ~L~~l~l~~N~l~~i~~~~f-~~l~~L~~L~l~~N  211 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFAN  211 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSS
T ss_pred             ccchhhhhhccccccChhHh-hhhhhccccccccc
Confidence            99999999988553221222 45788887777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.00047  Score=51.07  Aligned_cols=38  Identities=24%  Similarity=0.164  Sum_probs=17.3

Q ss_pred             cCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeecee
Q 035790           73 GCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCR  111 (198)
Q Consensus        73 ~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~  111 (198)
                      ++++|+.|++++|.++.-.- ....++++|++|+|++++
T Consensus        54 ~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          54 GLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             SCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSSC
T ss_pred             cccccCcceeeccccCCccc-ccccccccccceeccCCC
Confidence            45555555555554332110 112345555555555555

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.77  E-value=0.0023  Score=50.90  Aligned_cols=54  Identities=15%  Similarity=0.072  Sum_probs=25.9

Q ss_pred             CCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceec
Q 035790           49 GKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRL  112 (198)
Q Consensus        49 ~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~i  112 (198)
                      +++|++|+|++|..+.     |....++|++|++++|.+++     +...+++|++|++++|++
T Consensus       283 ~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~L~~N~L~~-----l~~~~~~L~~L~L~~N~L  336 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE-----LPALPPRLERLIASFNHLAE-----VPELPQNLKQLHVEYNPL  336 (353)
T ss_dssp             CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCC
T ss_pred             CCCCCEEECCCCccCc-----cccccCCCCEEECCCCcCCc-----cccccCCCCEEECcCCcC
Confidence            4555555555554321     11234555555555554443     112344555555555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.00058  Score=54.12  Aligned_cols=61  Identities=16%  Similarity=0.170  Sum_probs=38.5

Q ss_pred             hcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790           72 EGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus        72 ~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      .++++|+.|++++|.++.-.... ...+++|++|+|++|+++.  +..=+...+.|+...+.++
T Consensus       145 ~~l~~l~~l~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~L~~--lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         145 TPTPKLEKLSLANNNLTELPAGL-LNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TTCTTCCEEECTTSCCSCCCTTT-TTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSC
T ss_pred             cccccchhcccccccccccCccc-cccccccceeecccCCCcc--cChhHCCCCCCCEEEecCC
Confidence            45677888888888665433222 3568889999999888542  1111124677877777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.0013  Score=48.63  Aligned_cols=86  Identities=15%  Similarity=0.121  Sum_probs=56.1

Q ss_pred             hhCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCC
Q 035790           23 RNCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYY  100 (198)
Q Consensus        23 ~~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~  100 (198)
                      .+.++|++|.+.+  .++.-....+. ..++|+.|+++++..+.-.-.+ ..++++|++|+|++|.++.-.  .-+-...
T Consensus        28 ~~l~~l~~L~l~~n~~l~~i~~~~f~-~l~~L~~L~Ls~N~l~~i~~~~-f~~l~~L~~L~Ls~N~l~~l~--~~~~~~~  103 (156)
T d2ifga3          28 PGAENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVAPDA-FHFTPRLSRLNLSFNALESLS--WKTVQGL  103 (156)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEECTTG-GGSCSCCCEEECCSSCCSCCC--STTTCSC
T ss_pred             cCccccCeeecCCCccccccCchhhc-cccccCcceeeccccCCccccc-ccccccccceeccCCCCcccC--hhhhccc
Confidence            4568999999942  23322222222 5789999999999873221122 256899999999999765211  1112344


Q ss_pred             CCcEEEeeceec
Q 035790          101 NMRFLWMSSCRL  112 (198)
Q Consensus       101 ~L~~L~L~~c~i  112 (198)
                      +|++|+|+++.+
T Consensus       104 ~l~~L~L~~Np~  115 (156)
T d2ifga3         104 SLQELVLSGNPL  115 (156)
T ss_dssp             CCCEEECCSSCC
T ss_pred             cccccccCCCcc
Confidence            799999999984

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.83  E-value=0.0014  Score=52.30  Aligned_cols=63  Identities=14%  Similarity=0.257  Sum_probs=29.9

Q ss_pred             cCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCCcEEEeeceecC
Q 035790           48 YGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLT  113 (198)
Q Consensus        48 ~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L~~L~L~~c~iT  113 (198)
                      .++.++.|+++++..++..... ..++++|++|+|++|.++.-  .....++++|++|+|++|+++
T Consensus       193 ~~~~l~~L~~s~n~l~~~~~~~-~~~l~~L~~L~L~~N~L~~l--p~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         193 GLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKLVKV--PGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TCTTCCEEECCSSCCCEECTTT-GGGSTTCCEEECCSSCCSSC--CTTTTTCSSCCEEECCSSCCC
T ss_pred             cccccccccccccccccccccc-ccccccceeeeccccccccc--ccccccccCCCEEECCCCccC
Confidence            4555666666555442211111 23456666666666544321  111234556666666665543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=94.49  E-value=0.00075  Score=54.30  Aligned_cols=85  Identities=15%  Similarity=0.055  Sum_probs=36.4

Q ss_pred             hCCCCceeEecC--CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCC
Q 035790           24 NCRKLTRLAVSG--LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYN  101 (198)
Q Consensus        24 ~c~~L~~L~L~g--~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~  101 (198)
                      .+++|++|+|++  .++...-..|+ .+++|++|+|+++..+.... .....+++|+.+++++|.++..- .....++++
T Consensus        74 ~L~~L~~L~Ls~~N~l~g~iP~~i~-~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~~l~l~~N~~~~~~-p~~l~~l~~  150 (313)
T d1ogqa_          74 NLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSGTL-PPSISSLPN  150 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEECC-GGGGGCTTCCEEECCSSEEESCC-CGGGGGCTT
T ss_pred             cCccccccccccccccccccccccc-cccccchhhhcccccccccc-ccccchhhhcccccccccccccC-chhhccCcc
Confidence            455556555532  11211112233 35566666665554411111 11233555555555555322110 011245566


Q ss_pred             CcEEEeecee
Q 035790          102 MRFLWMSSCR  111 (198)
Q Consensus       102 L~~L~L~~c~  111 (198)
                      |+.++++++.
T Consensus       151 L~~l~l~~n~  160 (313)
T d1ogqa_         151 LVGITFDGNR  160 (313)
T ss_dssp             CCEEECCSSC
T ss_pred             cceeeccccc
Confidence            6666666665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=93.77  E-value=0.0083  Score=47.44  Aligned_cols=70  Identities=20%  Similarity=0.154  Sum_probs=48.8

Q ss_pred             hCCCCceeEecC-CCCHHHHHHHHhcCCCCcEEEeeccCCChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCC
Q 035790           24 NCRKLTRLAVSG-LLTDRAFGYIGKYGKLIRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNM  102 (198)
Q Consensus        24 ~c~~L~~L~L~g-~lTD~~L~~I~~~~~~L~~L~L~~c~~tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L  102 (198)
                      .+++|++|+|++ .++.     |....++|+.|+|++|..++     |...+++|++|++++|+++.     +..-..+|
T Consensus       282 ~~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~L~~N~L~~-----l~~~~~~L~~L~L~~N~L~~-----lp~~~~~L  346 (353)
T d1jl5a_         282 LPPSLEELNVSNNKLIE-----LPALPPRLERLIASFNHLAE-----VPELPQNLKQLHVEYNPLRE-----FPDIPESV  346 (353)
T ss_dssp             CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSS-----CCCCCTTC
T ss_pred             cCCCCCEEECCCCccCc-----cccccCCCCEEECCCCcCCc-----cccccCCCCEEECcCCcCCC-----CCcccccc
Confidence            468999999965 2232     33457899999999987643     22346789999999998764     12223468


Q ss_pred             cEEEee
Q 035790          103 RFLWMS  108 (198)
Q Consensus       103 ~~L~L~  108 (198)
                      ++|.+.
T Consensus       347 ~~L~~~  352 (353)
T d1jl5a_         347 EDLRMN  352 (353)
T ss_dssp             CEEECC
T ss_pred             CeeECc
Confidence            888764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.0031  Score=48.41  Aligned_cols=83  Identities=14%  Similarity=0.192  Sum_probs=51.0

Q ss_pred             CCCceeEecC-CCC---HHHHHHHHhcCCCCcEEEeeccCCChH-HHHHHHhcCCCCceEEecCC-CCChHHHHHHHhcC
Q 035790           26 RKLTRLAVSG-LLT---DRAFGYIGKYGKLIRTLSVAFAGDSDM-GLKYVLEGCPKLQKLEIRDS-PFGDAALRSGLHHY   99 (198)
Q Consensus        26 ~~L~~L~L~g-~lT---D~~L~~I~~~~~~L~~L~L~~c~~tD~-gl~~i~~~C~~L~~L~L~~c-~~tD~~l~~i~~~~   99 (198)
                      +++++|++++ .++   +..|    ..+++|++|+++++..++. .... ..+++++++|.+..+ .++..... ....+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f----~~l~~L~~L~ls~n~~~~~i~~~~-f~~l~~l~~l~~~~~n~l~~~~~~-~~~~l  102 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAF----SGFGDLEKIEISQNDVLEVIEADV-FSNLPKLHEIRIEKANNLLYINPE-AFQNL  102 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTT----TTCTTCCEEEEESCTTCCEECSSS-EESCTTCCEEEEECCTTCCEECTT-SEECC
T ss_pred             CCCCEEECcCCcCCccChhHh----hccchhhhhhhccccccceeeccc-cccccccccccccccccccccccc-ccccc
Confidence            4788888854 222   2222    3578999999988865221 1111 245788888887665 44332211 23678


Q ss_pred             CCCcEEEeeceecCH
Q 035790          100 YNMRFLWMSSCRLTR  114 (198)
Q Consensus       100 ~~L~~L~L~~c~iTd  114 (198)
                      ++|++|+++++.+++
T Consensus       103 ~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1         103 PNLQYLLISNTGIKH  117 (242)
T ss_dssp             TTCCEEEEESCCCCS
T ss_pred             ccccccccchhhhcc
Confidence            888889888887543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=92.13  E-value=0.0038  Score=49.96  Aligned_cols=105  Identities=17%  Similarity=0.104  Sum_probs=64.8

Q ss_pred             CCceeEecCC-CCH--HHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcCCCC
Q 035790           27 KLTRLAVSGL-LTD--RAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNM  102 (198)
Q Consensus        27 ~L~~L~L~g~-lTD--~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~~~L  102 (198)
                      ++++|+|++. ++.  ..-..|+ .+++|++|+|++|.. +..=-..| .++++|++|+|++|.|+.... .....+++|
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~-~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIP-DFLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECC-GGGGGCTTC
T ss_pred             EEEEEECCCCCCCCCCCCChHHh-cCcccccccccccccccccccccc-ccccccchhhhcccccccccc-ccccchhhh
Confidence            5788888541 221  1113465 589999999987543 32111233 458999999999997654322 224678899


Q ss_pred             cEEEeeceecCHHHHHHHHHhCCCCcEEEecCC
Q 035790          103 RFLWMSSCRLTRQGCQEIAQAMPRLVVEVIRSD  135 (198)
Q Consensus       103 ~~L~L~~c~iTd~gl~~La~~~p~L~~~~i~~~  135 (198)
                      ++++++.+.++..--..+ ..++.|+...+..+
T Consensus       128 ~~l~l~~N~~~~~~p~~l-~~l~~L~~l~l~~n  159 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPSI-SSLPNLVGITFDGN  159 (313)
T ss_dssp             CEEECCSSEEESCCCGGG-GGCTTCCEEECCSS
T ss_pred             cccccccccccccCchhh-ccCcccceeecccc
Confidence            999999987322111112 36777776666543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.83  E-value=0.0049  Score=47.18  Aligned_cols=88  Identities=10%  Similarity=0.072  Sum_probs=51.0

Q ss_pred             HhhCCCCceeEecCC-CCHHHHHHHHhcCCCCcEEEeeccCC-ChHHHHHHHhcCCCCceEEecCCCCChHHHHHHHhcC
Q 035790           22 VRNCRKLTRLAVSGL-LTDRAFGYIGKYGKLIRTLSVAFAGD-SDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHY   99 (198)
Q Consensus        22 ~~~c~~L~~L~L~g~-lTD~~L~~I~~~~~~L~~L~L~~c~~-tD~gl~~i~~~C~~L~~L~L~~c~~tD~~l~~i~~~~   99 (198)
                      +.++++|++|++++. +++..=......++++++|.+..+.. +..... ...++++|+.|+++++.+++..........
T Consensus        49 f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~-~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l  127 (242)
T d1xwdc1          49 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE-AFQNLPNLQYLLISNTGIKHLPDVHKIHSL  127 (242)
T ss_dssp             TTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTT-SEECCTTCCEEEEESCCCCSCCCCTTTCBS
T ss_pred             hhccchhhhhhhccccccceeeccccccccccccccccccccccccccc-cccccccccccccchhhhcccccccccccc
Confidence            367999999999552 22210011123578999999887654 322222 236799999999999977654322222333


Q ss_pred             CCCcEEEeece
Q 035790          100 YNMRFLWMSSC  110 (198)
Q Consensus       100 ~~L~~L~L~~c  110 (198)
                      +.|..+...+.
T Consensus       128 ~~l~~~~~~n~  138 (242)
T d1xwdc1         128 QKVLLDIQDNI  138 (242)
T ss_dssp             SCEEEEEESCT
T ss_pred             ccccccccccc
Confidence            44444444443