Citrus Sinensis ID: 035795

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
MSFSLRSSEYNARNAQYHMFNWLKIVYMPLWFVHNGLDNPLFLALQRIIRRRLKIESLMQFILELYLLSLKWKTDFFIFTFSVRIKLRHKTCKGVGVKATTYAKTIWMDLANAELISGTNFRNQDGNFTGVVHLEGYKTTVLKLTWLLEISKLVGFDYLITKKK
ccccccccccccccHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccHHHHcccccccccEEEEEEccEEEEEcccHHHHcccEEEccccEEEEEEEccccccccEEEEEEccccccccccccccccc
cccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccHHHHHHHHHHcccEEccHHHHHHHHHHHHHcccccccccccccEEEEEccEEEEEHHHHHHHccccEEcccccEEEEEEcccccccEEEEEEEccccccccccEEEEccc
msfslrssEYNARNAQYHMFNWLKIVYMPLwfvhngldnplFLALQRIIRRRLKIESLMQFILELYLLSLKWKTDFFIFTFSVRIKLRHktckgvgvkaTTYAKTIWMDLANAelisgtnfrnqdgnftGVVHLEGYKTTVLKLTWLLEISKLVGFDYLITKKK
MSFSLRSSEYNARNAQYHMFNWLKIVYMPLWFVHNGLDNPLFLALQRIIRRRLKIESLMQFILELYLLSLKWKTDFFIFTFSVRIklrhktckgvgvkATTYAKTIWMDLANAELISGTNFRNQDGNFTGVVHLEGYKTTVLKLTWLLeisklvgfdylitkkk
MSFSLRSSEYNARNAQYHMFNWLKIVYMPLWFVHNGLDNPLFLALQRIIRRRLKIESLMQFILELYLLSLKWKTDFFIFTFSVRIKLRHKTCKGVGVKATTYAKTIWMDLANAELISGTNFRNQDGNFTGVVHLEGYKTTVLKLTWLLEISKLVGFDYLITKKK
************RNAQYHMFNWLKIVYMPLWFVHNGLDNPLFLALQRIIRRRLKIESLMQFILELYLLSLKWKTDFFIFTFSVRIKLRHKTCKGVGVKATTYAKTIWMDLANAELISGTNFRNQDGNFTGVVHLEGYKTTVLKLTWLLEISKLVGFDYLIT***
MSFSLRSSEYNARNAQYHMFNWLKIVYMPLWFVHNGLDNPLFLALQRIIRRRLKIESLMQFILELYLLSLKWKTDFFIFTFSVRIKLRHKTCKGVGVKATTYAKTIWMDLANAELISGTNFRNQDGNFTGVVHLEGYKTTVLKLTWLLEISKLVGFDYLITKK*
********EYNARNAQYHMFNWLKIVYMPLWFVHNGLDNPLFLALQRIIRRRLKIESLMQFILELYLLSLKWKTDFFIFTFSVRIKLRHKTCKGVGVKATTYAKTIWMDLANAELISGTNFRNQDGNFTGVVHLEGYKTTVLKLTWLLEISKLVGFDYLITKKK
*SFSLRSSEYNARNAQYHMFNWLKIVYMPLWFVHNGLDNPLFLALQRIIRRRLKIESLMQFILELYLLSLKWKTDFFIFTFSVRIKLRHKTCKGVGVKATTYAKTIWMDLANAELISGTNFRNQDGNFTGVVHLEGYKTTVLKLTWLLEISKLVGFDYLITKK*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSFSLRSSEYNARNAQYHMFNWLKIVYMPLWFVHNGLDNPLFLALQRIIRRRLKIESLMQFILELYLLSLKWKTDFFIFTFSVRIKLRHKTCKGVGVKATTYAKTIWMDLANAELISGTNFRNQDGNFTGVVHLEGYKTTVLKLTWLLEISKLVGFDYLITKKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query164 2.2.26 [Sep-21-2011]
P46655708 Glutamate--tRNA ligase, c yes no 0.981 0.227 0.246 6e-08
O13775716 Probable glutamate--tRNA yes no 0.993 0.227 0.247 6e-05
>sp|P46655|SYEC_YEAST Glutamate--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GUS1 PE=1 SV=3 Back     alignment and function desciption
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 82/243 (33%)

Query: 1   MSFSLRSSEYNARNAQY------------HMFNWLKIVYMPL--------WFVHNGL--- 37
           ++ +LR+ EY  RNAQY            H++++ +I ++          W V   L   
Sbjct: 395 VTHALRTIEYRDRNAQYDWMLQALRLRKVHIWDFARINFVRTLLSKRKLQWMVDKDLVGN 454

Query: 38  -DNPLFLALQRIIRRRLKIESLMQFILEL----YLLSLKWKTDFFIFTFS---------- 82
            D+P F  ++ + RR + +E L  F+L       +++L+W     I+ F+          
Sbjct: 455 WDDPRFPTVRGVRRRGMTVEGLRNFVLSQGPSRNVINLEWN---LIWAFNKKVIDPIAPR 511

Query: 83  ----------------------VRIKLRHKTCKGVGVKATTYAKTIWMDLANAELISG-- 118
                                 + +K +HK    VG K   Y K I +D  +A++I+   
Sbjct: 512 HTAIVNPVKIHLEGSEAPQEPKIEMKPKHKKNPAVGEKKVIYYKDIVVDKDDADVINVDE 571

Query: 119 -----------TNFRNQDGNFTGVVHLEG-YKTTVLKLTWLLEIS-----KLVGFDYLIT 161
                         +N DG+    ++LEG +K T  KLTWL +        LV FD+LIT
Sbjct: 572 EVTLMDWGNVIITKKNDDGSMVAKLNLEGDFKKTKHKLTWLADTKDVVPVDLVDFDHLIT 631

Query: 162 KKK 164
           K +
Sbjct: 632 KDR 634
Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7
>sp|O13775|SYEC_SCHPO Probable glutamate--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A5.15c PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query164
357441991 735 Bifunctional aminoacyl-tRNA synthetase [ 1.0 0.223 0.375 1e-23
359487602 736 PREDICTED: probable glutamyl-tRNA synthe 1.0 0.222 0.379 4e-23
356534931 733 PREDICTED: probable glutamyl-tRNA synthe 1.0 0.223 0.379 6e-23
224124284 728 predicted protein [Populus trichocarpa] 0.993 0.223 0.386 1e-22
147838425 736 hypothetical protein VITISV_020288 [Viti 1.0 0.222 0.375 2e-22
255543064 728 glutamyl-tRNA synthetase, cytoplasmic, p 0.993 0.223 0.370 7e-22
356575275 732 PREDICTED: probable glutamyl-tRNA synthe 1.0 0.224 0.371 2e-21
449525786 682 PREDICTED: LOW QUALITY PROTEIN: probable 1.0 0.240 0.355 8e-21
449435593 729 PREDICTED: probable glutamate--tRNA liga 1.0 0.224 0.355 8e-21
30690281 719 glutamyl-tRNA synthetase [Arabidopsis th 1.0 0.228 0.351 1e-19
>gi|357441991|ref|XP_003591273.1| Bifunctional aminoacyl-tRNA synthetase [Medicago truncatula] gi|355480321|gb|AES61524.1| Bifunctional aminoacyl-tRNA synthetase [Medicago truncatula] Back     alignment and taxonomy information
 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 92/245 (37%), Positives = 118/245 (48%), Gaps = 81/245 (33%)

Query: 1   MSFSLRSSEYNARNAQYHM--------------FNWLKIVYMPL------WFVHN----G 36
           ++ +LRSSEY+ RNAQY+               F+ L +VY  L      WFV N     
Sbjct: 419 ITHALRSSEYHDRNAQYYRIQADMGVTRVLIYEFSRLNMVYTLLSKRKLLWFVQNEKVES 478

Query: 37  LDNPLFLALQRIIRRRLKIESLMQFILEL----YLLSLKWKTDFFI-------------- 78
            D+P F  +Q I+RR LKIE+L+QFI+E      L  ++W   + I              
Sbjct: 479 WDDPRFPTVQGIVRRGLKIEALIQFIVEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTA 538

Query: 79  --------FTFS-------VRIKLRHKTCKGVGVKATTYAKTIWMDLANAELISGTN--- 120
                    T +       VRI  RHK  +  G KATTY K IW+D A+AE +S      
Sbjct: 539 VIADRRVLLTLTDGPEKSFVRIIPRHKKYEAAGNKATTYTKRIWIDYADAESVSAGEEVT 598

Query: 121 ------------FRNQDGNFT---GVVHLEG-YKTTVLKLTWLLEISKLVG-----FDYL 159
                        ++QDGN T   GV+HLEG  KTT LKLTWL E+ +LV      FDYL
Sbjct: 599 LMDWGNAVVKEVEKDQDGNVTGLSGVLHLEGSVKTTKLKLTWLPELDELVSLTLMEFDYL 658

Query: 160 ITKKK 164
           ITKKK
Sbjct: 659 ITKKK 663

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359487602|ref|XP_002278667.2| PREDICTED: probable glutamyl-tRNA synthetase, cytoplasmic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356534931|ref|XP_003536004.1| PREDICTED: probable glutamyl-tRNA synthetase, cytoplasmic-like [Glycine max] Back     alignment and taxonomy information
>gi|224124284|ref|XP_002329985.1| predicted protein [Populus trichocarpa] gi|222871410|gb|EEF08541.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147838425|emb|CAN76587.1| hypothetical protein VITISV_020288 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255543064|ref|XP_002512595.1| glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis] gi|223548556|gb|EEF50047.1| glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356575275|ref|XP_003555767.1| PREDICTED: probable glutamyl-tRNA synthetase, cytoplasmic-like [Glycine max] Back     alignment and taxonomy information
>gi|449525786|ref|XP_004169897.1| PREDICTED: LOW QUALITY PROTEIN: probable glutamate--tRNA ligase, cytoplasmic-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449435593|ref|XP_004135579.1| PREDICTED: probable glutamate--tRNA ligase, cytoplasmic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30690281|ref|NP_850874.1| glutamyl-tRNA synthetase [Arabidopsis thaliana] gi|3435196|gb|AAC36469.1| glutamyl-tRNA synthetase [Arabidopsis thaliana] gi|20466252|gb|AAM20443.1| glutamyl-tRNA synthetase [Arabidopsis thaliana] gi|23198080|gb|AAN15567.1| glutamyl-tRNA synthetase [Arabidopsis thaliana] gi|110740992|dbj|BAE98590.1| glutamyl-tRNA synthetase [Arabidopsis thaliana] gi|332006190|gb|AED93573.1| glutamyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query164
TAIR|locus:2146769719 AT5G26710 [Arabidopsis thalian 0.475 0.108 0.389 9.6e-14
SGD|S000003214708 GUS1 "Glutamyl-tRNA synthetase 0.457 0.105 0.314 6.9e-05
POMBASE|SPAC17A5.15c716 SPAC17A5.15c "glutamate-tRNA l 0.335 0.076 0.409 0.00021
CGD|CAL0002084725 orf19.7057 [Candida albicans ( 0.195 0.044 0.475 0.00043
TAIR|locus:2146769 AT5G26710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 107 (42.7 bits), Expect = 9.6e-14, Sum P(3) = 9.6e-14
 Identities = 37/95 (38%), Positives = 53/95 (55%)

Query:    79 FTFSVRIKLRHKTCKGVGVKATTYAKTIWMDLANAELISGTNFRNQDGNFT---GVVHLE 135
             FT S+ ++    +   VG + T       MD  NA +   T  ++++G  T   GV++L+
Sbjct:   564 FTKSIWLEEADASAISVGEEVTL------MDWGNAIVKEIT--KDEEGRVTALSGVLNLQ 615

Query:   136 G-YKTTVLKLTWLLEISKLVG-----FDYLITKKK 164
             G  KTT LKLTWL + ++LV      FDYLITKKK
Sbjct:   616 GSVKTTKLKLTWLPDTNELVNLTLTEFDYLITKKK 650
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004818 "glutamate-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006412 "translation" evidence=IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006424 "glutamyl-tRNA aminoacylation" evidence=IEA
GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA
GO:0043039 "tRNA aminoacylation" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
SGD|S000003214 GUS1 "Glutamyl-tRNA synthetase (GluRS)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPAC17A5.15c SPAC17A5.15c "glutamate-tRNA ligase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
CGD|CAL0002084 orf19.7057 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query164
PLN02907722 PLN02907, PLN02907, glutamate-tRNA ligase 5e-38
PTZ00402 601 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Prov 2e-07
PLN03233 523 PLN03233, PLN03233, putative glutamate-tRNA ligase 6e-05
cd00807238 cd00807, GlnRS_core, catalytic core domain of glut 5e-04
>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase Back     alignment and domain information 
 Score =  136 bits (345), Expect = 5e-38
 Identities = 90/244 (36%), Positives = 112/244 (45%), Gaps = 85/244 (34%)

Query: 4   SLRSSEYNARNAQYHM--------------FNWLKIVYMPL------WFVHNGL----DN 39
           +LRSSEY+ RNAQY+               F+ L  VY  L      WFV NG     D+
Sbjct: 409 ALRSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDD 468

Query: 40  PLFLALQRIIRRRLKIESLMQFILE------LYLLSLKW--------------------- 72
           P F  +Q I+RR LKIE+L QFIL       L L+  +W                     
Sbjct: 469 PRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLM--EWDKLWTINKKIIDPVCPRHTAV 526

Query: 73  -KTDFFIFTFS-------VRIKLRHKTCKGVGVKATTYAKTIWMDLANAELIS------- 117
            K    + T +       VRI  RHK  +G G KATT+   IW+D A+AE IS       
Sbjct: 527 LKEGRVLLTLTDGPETPFVRIIPRHKKYEGAGKKATTFTNRIWLDYADAEAISEGEEVTL 586

Query: 118 ---GTNF-----RNQDGNFT---GVVHLEG-YKTTVLKLTWLLEIS-----KLVGFDYLI 160
              G        +++ G  T   G +HLEG  KTT LKLTWL + +      LV FDYLI
Sbjct: 587 MDWGNAIIKEITKDEGGAVTALSGELHLEGSVKTTKLKLTWLPDTNELVPLSLVEFDYLI 646

Query: 161 TKKK 164
           TKKK
Sbjct: 647 TKKK 650

Length = 722
>gnl|CDD|240404 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|185676 cd00807, GlnRS_core, catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 164
PTZ00437574 glutaminyl-tRNA synthetase; Provisional 100.0
PRK05347554 glutaminyl-tRNA synthetase; Provisional 100.0
PLN03233523 putative glutamate-tRNA ligase; Provisional 100.0
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 100.0
KOG1147712 consensus Glutamyl-tRNA synthetase [Translation, r 100.0
PLN02859788 glutamine-tRNA ligase 100.0
PLN02907722 glutamate-tRNA ligase 100.0
KOG1148764 consensus Glutaminyl-tRNA synthetase [Translation, 100.0
TIGR00440522 glnS glutaminyl-tRNA synthetase. This protein is a 100.0
PTZ00402 601 glutamyl-tRNA synthetase; Provisional 100.0
TIGR00463560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 100.0
PRK04156567 gltX glutamyl-tRNA synthetase; Provisional 100.0
PF03950174 tRNA-synt_1c_C: tRNA synthetases class I (E and Q) 99.8
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 99.73
cd09287240 GluRS_non_core catalytic core domain of non-discri 99.67
COG0008472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 99.52
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 98.93
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 98.55
cd00808239 GluRS_core catalytic core domain of discriminating 98.44
PRK12558445 glutamyl-tRNA synthetase; Provisional 98.44
PRK12410433 glutamylglutaminyl-tRNA synthetase; Provisional 98.11
PLN02627 535 glutamyl-tRNA synthetase 97.85
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 97.81
TIGR00464470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 97.57
PRK01406476 gltX glutamyl-tRNA synthetase; Reviewed 97.42
PRK14895 513 gltX glutamyl-tRNA synthetase; Provisional 96.92
KOG1149 524 consensus Glutamyl-tRNA synthetase (mitochondrial) 94.34
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 94.03
PF1372083 Acetyltransf_11: Udp N-acetylglucosamine O-acyltra 85.21
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.7e-49  Score=361.68  Aligned_cols=163  Identities=15%  Similarity=0.219  Sum_probs=140.6

Q ss_pred             Cceeecccccccccchhhe--------------eeeecccchh------HHHHHCC----CCCchhhhHHHhHhcCCCHH
Q 035795            1 MSFSLRSSEYNARNAQYHM--------------FNWLKIVYMP------LWFVHNG----LDNPLFLALQRIIRRRLKIE   56 (164)
Q Consensus         1 ITHslrt~E~~~~~~~y~w--------------f~RLnl~~tv------~~lV~~g----WDDPRlpTi~glrRRG~~pe   56 (164)
                      |||||||+||++|+++|+|              |||||++|++      ++||++|    |||||||||+|||||||+||
T Consensus       244 ITHvlct~Ef~~r~~~y~wl~~~l~l~~p~~~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~pe  323 (574)
T PTZ00437        244 IDYSLCTLEFETRRESYFWLLEELNLWRPHVWEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPA  323 (574)
T ss_pred             CCEEeeechhhcccHHHHHHHHHhCCcccceEeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHH
Confidence            8999999999999999998              9999999998      8889987    99999999999999999999


Q ss_pred             HHHHHHHHhc----ceeeeeece--------------------eEEEEE------EEEeeccCCCCCCCceEEEEeccEE
Q 035795           57 SLMQFILELY----LLSLKWKTD--------------------FFIFTF------SVRIKLRHKTCKGVGVKATTYAKTI  106 (164)
Q Consensus        57 aIr~F~~~iG----~~~i~~~~l--------------------~v~v~i------~~~~~p~hP~~~~~G~R~v~~~~~i  106 (164)
                      ||++||.++|    +++|+|++|                    ||+|+|      ..+++|+||++|++|+|++.|+++|
T Consensus       324 Ai~~f~~~~G~sk~~~~i~~~~Le~~nR~~ld~~a~R~~~V~dPv~v~I~n~~~~~~~~~p~hP~~~~~G~R~i~~~~~i  403 (574)
T PTZ00437        324 AINRFCELVGITRSMNVIQISMLENTLREDLDERCERRLMVIDPIKVVVDNWKGEREFECPNHPRKPELGSRKVMFTDTF  403 (574)
T ss_pred             HHHHHHHHhCCCccceEeeHHHHHHHHHHHhcccCccceEEccceEEEEecCCCceEEeccCCCCCCcCceEEEEEcCeE
Confidence            9999999999    889999999                    788888      5678999999999999999999999


Q ss_pred             EEecCcccccc---------C-C-e--------------eecCCCcE---EEEEEcCCccccCceEEEeeCCC----cce
Q 035795          107 WMDLANAELIS---------G-T-N--------------FRNQDGNF---TGVVHLEGYKTTVLKLTWLLEIS----KLV  154 (164)
Q Consensus       107 yIe~~D~~~~~---------~-e-i--------------~~~~~g~v---~~~~~~e~~kk~k~~I~Wv~~~~----~~~  154 (164)
                      |||++||+...         + + .              .++++|.|   .+.+.++..+++|++|||||+..    +++
T Consensus       404 yIe~~D~~~~~~~~~f~rL~~g~~~vrL~~~~~i~~~~~~~d~~g~v~~~~~~~d~~~~~k~k~~IhWvs~~~~v~~evr  483 (574)
T PTZ00437        404 YVDRSDFRTEDNNSKFYGLAPGPRVVGLKYSGNVVCKGFEVDAAGQPSVIHVDIDFERKDKPKTNISWVSATACTPVEVR  483 (574)
T ss_pred             EEEHHHhhcccccccceecCCCCeEEEeccEEEEEEEEEEECCCCCEEEEEEEecccccccCCCeEEEeecCCceeEEEE
Confidence            99999998421         1 1 2              23345655   24444555677888999999754    359


Q ss_pred             eecCCCccC
Q 035795          155 GFDYLITKK  163 (164)
Q Consensus       155 ~yd~L~~~~  163 (164)
                      +||+||+++
T Consensus       484 ~Yd~Lf~~~  492 (574)
T PTZ00437        484 LYNALLKDD  492 (574)
T ss_pred             eccccccCC
Confidence            999999985

>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF03950 tRNA-synt_1c_C: tRNA synthetases class I (E and Q), anti-codon binding domain; InterPro: IPR020059 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query164
1qtq_A553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 100.0
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 100.0
3aii_A553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 100.0
1j09_A468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 98.36
4g6z_A490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 98.32
3afh_A 488 Glutamyl-tRNA synthetase 2; protein-substrate comp 98.09
2cfo_A 492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 98.08
3al0_C 592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 98.02
2ja2_A 498 Glutamyl-tRNA synthetase; non-discriminating gluta 97.95
4gri_A 512 Glutamate--tRNA ligase; structural genomics, seatt 97.8
2o5r_A481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 97.56
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 97.11
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
Probab=100.00  E-value=7.5e-40  Score=298.53  Aligned_cols=164  Identities=15%  Similarity=0.250  Sum_probs=134.7

Q ss_pred             Cceeecccccccccchhhe---------------eeeecccchh------HHHHHCC----CCCchhhhHHHhHhcCCCH
Q 035795            1 MSFSLRSSEYNARNAQYHM---------------FNWLKIVYMP------LWFVHNG----LDNPLFLALQRIIRRRLKI   55 (164)
Q Consensus         1 ITHslrt~E~~~~~~~y~w---------------f~RLnl~~tv------~~lV~~g----WDDPRlpTi~glrRRG~~p   55 (164)
                      |||+|||.||.+|+++|.|               |+|||+.|+.      .++|++|    |||||||||++||||||+|
T Consensus       224 ITHviRg~e~~~n~~~q~~l~~alg~~~~P~~~~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~P  303 (553)
T 1qtq_A          224 ITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTA  303 (553)
T ss_dssp             CSEEEEEGGGTTTHHHHHHHHHTSCCSCCCEEEEECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCH
T ss_pred             cceEeeccchhhhHHHHHHHHHHcCCCCCCCeEEEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCH
Confidence            8999999999999998875               9999999997      5678876    9999999999999999999


Q ss_pred             HHHHHHHHHhc----ceeeeeece--------------------eEEEEE-------EEEeeccCCCCCCCceEEEEecc
Q 035795           56 ESLMQFILELY----LLSLKWKTD--------------------FFIFTF-------SVRIKLRHKTCKGVGVKATTYAK  104 (164)
Q Consensus        56 eaIr~F~~~iG----~~~i~~~~l--------------------~v~v~i-------~~~~~p~hP~~~~~G~R~v~~~~  104 (164)
                      |||++||..+|    +..++|.+|                    |+||.+       +.+++|+||+++++|+|.++|++
T Consensus       304 eAirnfl~~lG~s~~~~~~e~~~le~~~~~~l~~~~~r~~av~d~~Kl~~~N~~~~~~~~~~p~~p~~~~~g~r~~~~~~  383 (553)
T 1qtq_A          304 ASIREFCKRIGVTKQDNTIEMASLESCIREDLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSG  383 (553)
T ss_dssp             HHHHHHHHHHCCCSSCCCBCHHHHHHHHHHHHHHHSCEECEESSEEEEEBTTCCSSCEEEEEESCSSCGGGCEEEEEECS
T ss_pred             HHHHHHHHHcCCCCCccccchhhHHHHHHhCcccccccccceeccceEEEEcCCCceEEEEecCCCCChHHhhhhHhhCc
Confidence            99999999999    455777777                    578877       46899999999999999999999


Q ss_pred             EEEEecCccccccC---------C--------------eeecCCCcE---EEEEEcC-------CccccCceEEEeeCCC
Q 035795          105 TIWMDLANAELISG---------T--------------NFRNQDGNF---TGVVHLE-------GYKTTVLKLTWLLEIS  151 (164)
Q Consensus       105 ~iyIe~~D~~~~~~---------e--------------i~~~~~g~v---~~~~~~e-------~~kk~k~~I~Wv~~~~  151 (164)
                      +||||++||++.++         +              ++++++|+|   .|+|+++       ..+|+|++|||||+..
T Consensus       384 ~i~ie~~Df~e~~~~~~~rl~~g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~~~~~g~~~~~~k~k~~ihWv~~~~  463 (553)
T 1qtq_A          384 EIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAH  463 (553)
T ss_dssp             EEEEETTTEESSCCTTCCSEETTSEEEETTSCEEEEEEEECCSSSCCCEEEECCCSSCC-----------CEECCEESTT
T ss_pred             eEEEEHHHhhccCccccccCCCCCEEEeccEEEEEEEEEEEcCCCCEEEEEEEEecccccCCCccccccCCEEEEeecCC
Confidence            99999999986443         1              344566765   4666653       2578889999999765


Q ss_pred             c----ceeecCCCccCC
Q 035795          152 K----LVGFDYLITKKK  164 (164)
Q Consensus       152 ~----~~~yd~L~~~~k  164 (164)
                      .    +|+||+||++++
T Consensus       464 ~~~~~~~~yd~L~~~~~  480 (553)
T 1qtq_A          464 ALPVEIRLYDRLFSVPN  480 (553)
T ss_dssp             CEEEEEEEECCSBSSSC
T ss_pred             CEeEEEEecccccCCCC
Confidence            3    599999999874
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query164
d1gtra1209 Gln-tRNA synthetase (GlnRS), C-terminal (anticodon 99.8
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 99.53
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 98.86
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 98.24
>d1gtra1 b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Ribosomal protein L25-like
superfamily: Ribosomal protein L25-like
family: Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
domain: Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=4.2e-20  Score=148.49  Aligned_cols=89  Identities=12%  Similarity=0.214  Sum_probs=67.0

Q ss_pred             eEEEEE-------EEEeeccCCCCCCCceEEEEeccEEEEecCccccccC-C----------------------eeecCC
Q 035795           76 FFIFTF-------SVRIKLRHKTCKGVGVKATTYAKTIWMDLANAELISG-T----------------------NFRNQD  125 (164)
Q Consensus        76 ~v~v~i-------~~~~~p~hP~~~~~G~R~v~~~~~iyIe~~D~~~~~~-e----------------------i~~~~~  125 (164)
                      |++|+|       +.+++|+||++|++|+|+++|+++||||++||++.++ +                      +.++++
T Consensus        10 Plkv~I~n~~~~~~~~~vp~HPk~~~~G~r~i~~~~~iyIe~~Df~~~~~~~~~rL~~g~~V~L~~~~~i~~~~v~~d~~   89 (209)
T d1gtra1          10 PVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAE   89 (209)
T ss_dssp             EEEEEETTCCSSCEEEEEESSTTCGGGCEEEEEECSEEEEEGGGEESSCCSSCCSEESSSEEEETTSCEEEEEEEEECSS
T ss_pred             CEEEEEEcCCCCeEEEEecCCCCCCccceEEEEecCcEEEehHHhhhccchhheeecCCceeEEeccceEEeEEEeccCC
Confidence            789988       5689999999999999999999999999999986544 1                      345566


Q ss_pred             CcE---EEEEEcC------C-ccccCceEEEeeCCCc----ceeecCCCccCC
Q 035795          126 GNF---TGVVHLE------G-YKTTVLKLTWLLEISK----LVGFDYLITKKK  164 (164)
Q Consensus       126 g~v---~~~~~~e------~-~kk~k~~I~Wv~~~~~----~~~yd~L~~~~k  164 (164)
                      |.+   .|+++++      + .+++|++||||++...    +++||+||++++
T Consensus        90 g~v~~l~~~~~~~~~~~~~~~~kk~k~~i~Wv~~~~~v~~~~~~yd~Lf~~~~  142 (209)
T d1gtra1          90 GNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPN  142 (209)
T ss_dssp             SCEEEEEECCCSCCC-----------CEECCEETTTCEEEEEEEECCSBSSSC
T ss_pred             cceEEEEEEeccccccCCcccceeecccceeccCCcceeeEEEEeccccccCC
Confidence            766   3444443      2 4667889999987654    599999999874
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure