Citrus Sinensis ID: 035802

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTENPSV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHEEEEHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
teifcsirvsnelgagnpqpaRLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERtlegapstenpsv
Flexible Loop (DISEMBL)
teifcsirvsnelgagnpqpaRLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRertlegapstenpsv
Low Complexity Region (SEG)
TEIFCSIRVSNELGAGNPQParlatrvavalavaeaaivsiaLFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTENPSV
Disordered region (IsUnstruct)
***FCSIRV***********ARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQKQA*******************
Disordered Region (DISOPRED)
TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQKQATM*****************
Disordered Region (DISEMBL)
TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRE**************
Disordered Region (DISPRO)
*EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGA********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTENPSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q8RWF5	483	MATE efflux family protei	no	no	0.896	0.322	0.506	2e-39
Q9SIA5	476	MATE efflux family protei	no	no	0.931	0.340	0.487	2e-38
Q8GXM8	476	MATE efflux family protei	no	no	0.931	0.340	0.481	2e-38
Q9SIA1	477	MATE efflux family protei	no	no	0.896	0.327	0.480	1e-37
Q9SIA3	476	MATE efflux family protei	no	no	0.931	0.340	0.475	4e-37
Q9SIA4	476	MATE efflux family protei	no	no	0.931	0.340	0.475	9e-36
Q9LYT3	507	Protein TRANSPARENT TESTA	no	no	0.942	0.323	0.403	9e-28
Q9LUH3	469	MATE efflux family protei	no	no	0.850	0.315	0.405	7e-24
Q9USK3	539	Uncharacterized transport	yes	no	0.689	0.222	0.433	2e-21
Q9LUH2	477	MATE efflux family protei	no	no	0.850	0.310	0.398	4e-21

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score =  161 bits (408), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/156 (50%), Positives = 105/156 (67%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           SIRVSNELGAGNP+ ARLA    + L   EA I S  LF  R +  YAF++ ++VV YV+
Sbjct: 315 SIRVSNELGAGNPEVARLAVFAGIFLWFLEATICSTLLFICRDIFGYAFSNSKEVVDYVT 374

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            L+PLL I+  +D   +VL GVARG GWQHIGA+ N+ A+YL+G PV   L F  H+  K
Sbjct: 375 ELSPLLCISFLVDGFSAVLGGVARGSGWQHIGAWANVVAYYLLGAPVGLFLGFWCHMNGK 434

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRER 161
           GL +G++ GST Q + LA+VT+  +W +QA   R+R
Sbjct: 435 GLWIGVVVGSTAQGIILAIVTACMSWNEQAAKARQR 470

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score =  158 bits (400), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 111/166 (66%), Gaps = 4/166 (2%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSN LGAGNPQ AR++    + L + E+A  SI LF  R ++ YAF++ ++V+ YV+
Sbjct: 312 STRVSNNLGAGNPQVARVSVLAGLCLWIVESAFFSILLFTCRNIIGYAFSNSKEVLDYVA 371

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            L PLL ++  +D   +VL+GVARG GWQHIGA+ N  ++YLVG PV   L F+  L  K
Sbjct: 372 DLTPLLCLSFILDGFTAVLNGVARGSGWQHIGAWNNTVSYYLVGAPVGIYLAFSRELNGK 431

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTEN 171
           GL  G++ GSTVQA  LA+VT+  NW++QA   R+R +    STEN
Sbjct: 432 GLWCGVVVGSTVQATILAIVTASINWKEQAEKARKRIV----STEN 473

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/166 (48%), Positives = 111/166 (66%), Gaps = 4/166 (2%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSN+LGAGNPQ AR++    + L + E+A  S  LF  R ++ Y F++ ++VV YV+
Sbjct: 312 STRVSNKLGAGNPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYTFSNSKEVVDYVA 371

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            ++PLL ++  +D + +VL+GVARG GWQHIGA IN+ A+YLVG PV   L F+     K
Sbjct: 372 DISPLLCLSFILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGK 431

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTEN 171
           GL  G+M GS VQA  LA+VT+  NW++QA   R+R +    STEN
Sbjct: 432 GLWCGVMVGSAVQATLLAIVTASMNWKEQAEKARKRII----STEN 473

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score =  155 bits (393), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 105/156 (67%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S R+SNELGAGNP+ ARLA    + L   EA I S  LF  + +  YAF++ ++VV YV+
Sbjct: 315 STRISNELGAGNPEVARLAVFAGIFLWFLEATICSTLLFTCKNIFGYAFSNSKEVVDYVT 374

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            L+ LL ++  +D   SVL GVARG GWQ+IGA+ N+ A+YL+G PV + L F  H+  K
Sbjct: 375 ELSSLLCLSFMVDGFSSVLDGVARGSGWQNIGAWANVVAYYLLGAPVGFFLGFWGHMNGK 434

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRER 161
           GL +G++ GST Q + LA+VT+  +W++QA   RER
Sbjct: 435 GLWIGVIVGSTAQGIILAIVTACLSWEEQAAKARER 470

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score =  153 bits (387), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 112/166 (67%), Gaps = 4/166 (2%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSN+LGAG PQ AR++    + L + E++  SI LF  R ++ YAF++ ++VV YV+
Sbjct: 312 STRVSNKLGAGIPQVARVSVLAGLCLWLVESSFFSILLFAFRNIIGYAFSNSKEVVDYVA 371

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            L+PLL ++  +D   +VL+GVARG GWQHIGA  N+ A+YLVG PV   L F+  L  K
Sbjct: 372 DLSPLLCLSFVLDGFTAVLNGVARGCGWQHIGALNNVVAYYLVGAPVGIYLAFSCELNGK 431

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTEN 171
           GL  G++ GS VQA+ LA+VT+  NW++QA   R+R +    S+EN
Sbjct: 432 GLWCGVVVGSAVQAIILAIVTASMNWKEQAKKARKRLI----SSEN 473

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score =  149 bits (376), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 108/166 (65%), Gaps = 4/166 (2%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSN+LGAG PQ AR++    + L + E+A  S  LF  R ++ YAF++ ++VV YV+
Sbjct: 312 STRVSNKLGAGIPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYAFSNSKEVVDYVA 371

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            L PLL ++  +D   +VL+GVARG GWQHIGA  N+ A+YLVG PV   L F   L  K
Sbjct: 372 NLTPLLCLSFILDGFTAVLNGVARGSGWQHIGALNNVVAYYLVGAPVGVYLAFNRELNGK 431

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTEN 171
           GL  G++ GS VQA+ LA VT+  NW++QA   R+R +    S+EN
Sbjct: 432 GLWCGVVVGSAVQAIILAFVTASINWKEQAEKARKRMV----SSEN 473

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score =  122 bits (307), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 2/166 (1%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S+RVSNELGAGNP+ A L+  V     V  ++++ + +   R  L+ AF SD +V+  VS
Sbjct: 336 SVRVSNELGAGNPRVAMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVS 395

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            L PLL+++IF++ +Q +LSGVA G GWQ + AY+NL  +Y++G+P+  VL F   L   
Sbjct: 396 DLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVA 455

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTEN 171
           G+  G+++G  +Q + L V+T  TNW  +     +R    A  TEN
Sbjct: 456 GIWWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQRVKTSA--TEN 499

May be involved in vacuolar transport of flavonoids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score =  109 bits (273), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 89/148 (60%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSNELGAGN + A+ AT V+V L++  A  V IA+          F++   + +  +
Sbjct: 316 STRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIAILVGHDAWVGLFSNSHVIKEGFA 375

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            L   L+ +I +D++Q VLSGVARG GWQ +   INLG FYL+G+P++ +  F + L  K
Sbjct: 376 SLRFFLAASITLDSIQGVLSGVARGCGWQRLATVINLGTFYLIGMPISVLCGFKLKLHAK 435

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQK 153
           GL +GL+ G   Q+ +L ++T    W K
Sbjct: 436 GLWIGLICGMFCQSASLLLMTIFRKWTK 463

Arabidopsis thaliana (taxid: 3702)

>sp|Q9USK3|YJ2D_SCHPO Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.13 PE=3 SV=1

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 74/120 (61%)

Query: 8   RVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRL 67
           RV N +GAGN + A+LAT V++ L  A   I+++ LF +R    Y F SD+DVV  V+ +
Sbjct: 382 RVGNLIGAGNTKLAKLATHVSINLGAAIGVIIAVILFLTRNTWTYIFTSDKDVVALVATI 441

Query: 68  APLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGL 127
            PL+++    DN Q V  G+ RG G Q IG  +N  A+YL+G+PVA +LCF +     GL
Sbjct: 442 IPLVALINIADNTQCVAGGLLRGQGRQRIGGVVNFIAYYLLGLPVAIILCFKLDWGLYGL 501

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 84/148 (56%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSNELGAGN + A+ AT V+V L++  A  V I L          F+    + +  +
Sbjct: 324 STRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIVLLVGHDGWVGLFSDSYVIKEEFA 383

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            L   L+ +I +D++Q VLSGVARG GWQ +   INL  FYL+G+P+A    F +    K
Sbjct: 384 SLRFFLAASITLDSIQGVLSGVARGCGWQRLVTVINLATFYLIGMPIAAFCGFKLKFYAK 443

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQK 153
           GL +GL+ G   Q+ +L ++T    W K
Sbjct: 444 GLWIGLICGIFCQSSSLLLMTIFRKWTK 471

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
296087229	501	unnamed protein product [Vitis vinifera]	0.965	0.335	0.589	5e-53
359488145	494	PREDICTED: MATE efflux family protein 5-	0.965	0.340	0.589	5e-53
147782271	489	hypothetical protein VITISV_044050 [Viti	0.965	0.343	0.589	7e-53
356567250	462	PREDICTED: MATE efflux family protein DT	0.965	0.363	0.589	8e-52
356515374	480	PREDICTED: MATE efflux family protein DT	0.965	0.35	0.589	1e-51
356499620	475	PREDICTED: MATE efflux family protein DT	0.965	0.353	0.559	2e-49
224077218	475	predicted protein [Populus trichocarpa]	0.954	0.349	0.584	6e-49
255574294	470	TRANSPARENT TESTA 12 protein, putative [	0.896	0.331	0.608	3e-48
297737742	444	unnamed protein product [Vitis vinifera]	0.954	0.373	0.566	4e-48
359472648	481	PREDICTED: MATE efflux family protein 5	0.954	0.345	0.566	4e-48

>gi|296087229|emb|CBI33603.3| unnamed protein product [Vitis vinifera]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 127/168 (75%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSNELGAGNPQ AR+A    + LA+ E  +VS  LFC RYVL YA++SD+ +V  V+
Sbjct: 275 STRVSNELGAGNPQAARVAVWAVMFLAIIETTVVSTTLFCCRYVLGYAYSSDKQIVDNVA 334

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            +APL+ ++I MD++Q VLSGVARG GWQHIGAYINLGAFY+VG+PVA +L F VHL+ K
Sbjct: 335 VMAPLICLSIVMDSIQGVLSGVARGSGWQHIGAYINLGAFYVVGLPVAIILGFVVHLKAK 394

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTENPS 173
           GL +G+++GS VQ+  L+++T  TNW+KQA   RER  EG  S EN S
Sbjct: 395 GLWIGIVTGSVVQSTLLSIITGFTNWKKQANKARERIFEGPSSVENRS 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488145|ref|XP_002265933.2| PREDICTED: MATE efflux family protein 5-like [Vitis vinifera]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 127/168 (75%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSNELGAGNPQ AR+A    + LA+ E  +VS  LFC RYVL YA++SD+ +V  V+
Sbjct: 312 STRVSNELGAGNPQAARVAVWAVMFLAIIETTVVSTTLFCCRYVLGYAYSSDKQIVDNVA 371

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            +APL+ ++I MD++Q VLSGVARG GWQHIGAYINLGAFY+VG+PVA +L F VHL+ K
Sbjct: 372 VMAPLICLSIVMDSIQGVLSGVARGSGWQHIGAYINLGAFYVVGLPVAIILGFVVHLKAK 431

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTENPS 173
           GL +G+++GS VQ+  L+++T  TNW+KQA   RER  EG  S EN S
Sbjct: 432 GLWIGIVTGSVVQSTLLSIITGFTNWKKQANKARERIFEGPSSVENRS 479

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782271|emb|CAN69572.1| hypothetical protein VITISV_044050 [Vitis vinifera]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 127/168 (75%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSNELGAGNPQ AR+A    + LA+ E  +VS  LFC RYVL YA++SD+ +V  V+
Sbjct: 307 STRVSNELGAGNPQAARVAVWAVMFLAIIETTVVSTTLFCCRYVLGYAYSSDKQIVDNVA 366

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            +APL+ ++I MD++Q VLSGVARG GWQHIGAYINLGAFY+VG+PVA +L F VHL+ K
Sbjct: 367 VMAPLICLSIVMDSIQGVLSGVARGSGWQHIGAYINLGAFYVVGLPVAIILGFVVHLKAK 426

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTENPS 173
           GL +G+++GS VQ+  L+++T  TNW+KQA   RER  EG  S EN S
Sbjct: 427 GLWIGIVTGSVVQSTLLSIITGXTNWKKQANKARERIFEGPSSVENRS 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567250|ref|XP_003551834.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max]

 Score =  208 bits (529), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 125/168 (74%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSNELGAGNPQ  R+A    + LAV E  IVS  LF  R++L YA++ D+ VV YV+
Sbjct: 289 STRVSNELGAGNPQAVRVAVSATMFLAVTEGLIVSATLFGCRHLLGYAYSDDRMVVHYVA 348

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            + PLL ++IF D++Q VLSGVARG GWQH+GAY+NLGAFYLVGIPV  VL F  HLR K
Sbjct: 349 VMTPLLCLSIFTDSLQGVLSGVARGSGWQHLGAYVNLGAFYLVGIPVGIVLGFVAHLRAK 408

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTENPS 173
           GL +G+++GS VQ++ L++VT+LTNW+KQA M RER  +  P  EN S
Sbjct: 409 GLWIGIVTGSIVQSILLSLVTALTNWKKQAMMARERIFDAKPPDENES 456

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515374|ref|XP_003526375.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max]

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 125/168 (74%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSNELGAGNPQ  R+A    + LAV E  IVS  LF  R++L YA++ D+ VV YV+
Sbjct: 307 STRVSNELGAGNPQAVRVAVSATMFLAVTEGLIVSATLFGCRHILGYAYSDDRMVVHYVA 366

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            + PLL ++IF D++Q VLSGVARG GWQH+GAY+NLGAFYLVGIPV  VL F  HLR K
Sbjct: 367 VMTPLLCLSIFTDSLQGVLSGVARGSGWQHLGAYVNLGAFYLVGIPVGIVLGFVAHLRAK 426

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTENPS 173
           GL +G+++GS VQ++ L++VT+LTNW+KQA M RER  +  P  EN S
Sbjct: 427 GLWIGIVTGSIVQSILLSLVTALTNWKKQAMMARERIFDVKPPDENES 474

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499620|ref|XP_003518635.1| PREDICTED: MATE efflux family protein DTX1-like isoform 1 [Glycine max] gi|356499622|ref|XP_003518636.1| PREDICTED: MATE efflux family protein DTX1-like isoform 2 [Glycine max]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/168 (55%), Positives = 122/168 (72%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSNELGAGNPQ   +A    + LAV E  IVS  LF  R++L YA++ D+ VV YV+
Sbjct: 302 STRVSNELGAGNPQAVHVAVSATMFLAVTEGFIVSATLFGCRHILGYAYSDDRMVVHYVA 361

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            + PLL ++IF D++Q VLSGVARG GWQH+GAY+NLGAFYLVGIPV  +L F  H R K
Sbjct: 362 VMIPLLCLSIFTDSLQGVLSGVARGSGWQHLGAYVNLGAFYLVGIPVGILLGFVAHFRAK 421

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTENPS 173
           GL +G+++GS VQ++ L+++T+LTNW+KQA M RER  +  P   N S
Sbjct: 422 GLWIGIVTGSIVQSILLSLITALTNWKKQAIMARERVFDAKPPDVNGS 469

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077218|ref|XP_002305184.1| predicted protein [Populus trichocarpa] gi|222848148|gb|EEE85695.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 97/166 (58%), Positives = 127/166 (76%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSNELGAGNPQ AR+A  VA+ LA  E+ IVS  LF SR VL YA+++D+ VV+Y+S
Sbjct: 307 STRVSNELGAGNPQLARMAVLVALFLAGIESVIVSSGLFLSRQVLGYAYSNDRQVVRYIS 366

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            + PL+ ++  MD++Q+VLSGVARG GWQ IGAYINLG+FYLVG+P+A VL F  HLR K
Sbjct: 367 VMTPLICLSFIMDSLQAVLSGVARGSGWQKIGAYINLGSFYLVGLPLAAVLGFVAHLRGK 426

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTEN 171
           GL +G+++GS VQ+V L++VT+ T+W KQAT  RER  E   S ++
Sbjct: 427 GLWIGILAGSFVQSVLLSIVTACTDWNKQATKARERVFERRSSMKD 472

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574294|ref|XP_002528061.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223532522|gb|EEF34311.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 95/156 (60%), Positives = 123/156 (78%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSNELGAGNPQ ARLA  VA+ LA AEAAIVS  +F SR+VL YA+++++ VV YV+
Sbjct: 313 STRVSNELGAGNPQSARLAVMVAICLAGAEAAIVSATVFFSRHVLGYAYSNNKQVVNYVA 372

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            +APL+ ++  +D++Q+VLSGVARG GWQ IGAYINLGAFYLVG+PV  VL F  HL+ K
Sbjct: 373 IMAPLICLSFILDSLQAVLSGVARGCGWQKIGAYINLGAFYLVGLPVGAVLGFVSHLKGK 432

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRER 161
           GL +G+++GS VQ+  L+++T  TNW+KQ T  RER
Sbjct: 433 GLWIGIIAGSIVQSTLLSLITGSTNWKKQVTKARER 468

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737742|emb|CBI26943.3| unnamed protein product [Vitis vinifera]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/166 (56%), Positives = 118/166 (71%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSNELGAGNPQ ARLA   AV LAV EA ++S  LF SR V  Y F+ +++VV YV+
Sbjct: 275 STRVSNELGAGNPQKARLAVHAAVCLAVTEAIVISTTLFVSRRVFGYVFSEEEEVVDYVT 334

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            +AP L +++ +D++Q  LSGV RG G Q IGA+INLGAFYL GIPVA +L F VHLR K
Sbjct: 335 NIAPFLCLSVILDSVQGTLSGVVRGCGRQRIGAFINLGAFYLCGIPVAVILAFVVHLRGK 394

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTEN 171
           GL +GL +GS +Q   L ++T  TNW++QAT  R+R  EG  S EN
Sbjct: 395 GLWVGLQTGSLLQTSLLLIITGCTNWEEQATKARQRIFEGTSSVEN 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472648|ref|XP_002280189.2| PREDICTED: MATE efflux family protein 5 [Vitis vinifera]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/166 (56%), Positives = 118/166 (71%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S RVSNELGAGNPQ ARLA   AV LAV EA ++S  LF SR V  Y F+ +++VV YV+
Sbjct: 312 STRVSNELGAGNPQKARLAVHAAVCLAVTEAIVISTTLFVSRRVFGYVFSEEEEVVDYVT 371

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            +AP L +++ +D++Q  LSGV RG G Q IGA+INLGAFYL GIPVA +L F VHLR K
Sbjct: 372 NIAPFLCLSVILDSVQGTLSGVVRGCGRQRIGAFINLGAFYLCGIPVAVILAFVVHLRGK 431

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTEN 171
           GL +GL +GS +Q   L ++T  TNW++QAT  R+R  EG  S EN
Sbjct: 432 GLWVGLQTGSLLQTSLLLIITGCTNWEEQATKARQRIFEGTSSVEN 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2037723	487	AT1G15150 "AT1G15150" [Arabido	0.896	0.320	0.474	9.2e-36
TAIR|locus:2033309	485	AT1G66780 "AT1G66780" [Arabido	0.931	0.334	0.444	1.9e-35
TAIR|locus:2037868	482	AT1G15180 "AT1G15180" [Arabido	0.896	0.323	0.455	5.1e-35
TAIR|locus:2037858	481	AT1G15170 "AT1G15170" [Arabido	0.896	0.324	0.455	8.3e-35
TAIR|locus:2037848	487	AT1G15160 "AT1G15160" [Arabido	0.896	0.320	0.448	1.2e-33
TAIR|locus:2033334	482	AT1G66760 "AT1G66760" [Arabido	0.896	0.323	0.435	1.5e-33
TAIR|locus:2010926	502	AT1G64820 [Arabidopsis thalian	0.948	0.328	0.406	2.5e-33
TAIR|locus:2026311	485	AT1G71140 "AT1G71140" [Arabido	0.908	0.325	0.455	1.4e-32
TAIR|locus:2050230	483	AT2G04100 "AT2G04100" [Arabido	0.954	0.343	0.433	2.3e-32
TAIR|locus:2050185	476	AT2G04080 "AT2G04080" [Arabido	0.931	0.340	0.445	3.7e-32

TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 74/156 (47%), Positives = 101/156 (64%)

Query:     6 SIRVSNELGAGNPQPXXXXXXXXXXXXXXXXXXXXXXLFCSRYVLAYAFNSDQDVVKYVS 65
             S R+SNELGAGN +                       L   R+V  + F+SD+  ++YV+
Sbjct:   316 STRISNELGAGNSRAAHIVVYAAMSLAVMDALMVSMSLLAGRHVFGHVFSSDKKTIEYVA 375

Query:    66 RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
             ++APL+SI+I +D++Q VLSGVA G GWQHIGAYIN GAFYL GIP+A  L F VHL+  
Sbjct:   376 KMAPLVSISIILDSLQGVLSGVASGCGWQHIGAYINFGAFYLWGIPIAASLAFWVHLKGV 435

Query:   126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRER 161
             GL +G+++G+ +Q + LA+VT  TNW+ QA   RER
Sbjct:   436 GLWIGILAGAVLQTLLLALVTGCTNWKTQAREARER 471

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2033309 AT1G66780 "AT1G66780" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 72/162 (44%), Positives = 102/162 (62%)

Query:     6 SIRVSNELGAGNPQPXXXXXXXXXXXXXXXXXXXXXXLFCSRYVLAYAFNSDQDVVKYVS 65
             S  VSN+LGAGNP+                       L+  R   AY F+++ +V  YV+
Sbjct:   320 STHVSNKLGAGNPKAARSAANSAIFLGMIDAAIVSISLYSYRRNWAYIFSNESEVADYVT 379

Query:    66 RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
             ++ P L ++I +D+  +VLSGVARG GWQHIGAY N+G++YLVGIPV  +LCF V LR K
Sbjct:   380 QITPFLCLSIGVDSFLAVLSGVARGTGWQHIGAYANIGSYYLVGIPVGSILCFVVKLRGK 439

Query:   126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAP 167
             GL +G++ GST+Q + LA+VT  TNW+++    R+R +E  P
Sbjct:   440 GLWIGILVGSTLQTIVLALVTFFTNWEQEVAKARDRVIEMIP 481

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 71/156 (45%), Positives = 98/156 (62%)

Query:     6 SIRVSNELGAGNPQPXXXXXXXXXXXXXXXXXXXXXXLFCSRYVLAYAFNSDQDVVKYVS 65
             S R+SNELGAGN +                       L   R V  + F+SD++ + YV+
Sbjct:   320 STRISNELGAGNSRAANIVVYAAMSLAVVEILILSTSLLVGRNVFGHVFSSDKETIDYVA 379

Query:    66 RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
             ++APL+SI++ +D +Q VLSG+ARG GWQHIGAYINLGAFYL GIP+A  L F +HL+  
Sbjct:   380 KMAPLVSISLILDGLQGVLSGIARGCGWQHIGAYINLGAFYLWGIPIAASLAFWIHLKGV 439

Query:   126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRER 161
             GL +G+ +G+ +Q + L +VT  TNW+ QA   R R
Sbjct:   440 GLWIGIQAGAVLQTLLLTLVTGCTNWESQADKARNR 475

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 71/156 (45%), Positives = 99/156 (63%)

Query:     6 SIRVSNELGAGNPQPXXXXXXXXXXXXXXXXXXXXXXLFCSRYVLAYAFNSDQDVVKYVS 65
             S R+SNELGAGN +                       L   R +  + F+SD++ + YV+
Sbjct:   319 STRISNELGAGNSRAAHIVVYAAMSLAVIDALIVSMSLLIGRNLFGHIFSSDKETIDYVA 378

Query:    66 RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
             ++APL+SI++ +D +Q VLSG+ARG GWQHIGAYINLGAFYL GIP+A  L F +HL+  
Sbjct:   379 KMAPLVSISLMLDALQGVLSGIARGCGWQHIGAYINLGAFYLWGIPIAASLAFWIHLKGV 438

Query:   126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRER 161
             GL +G+ +G+ +Q + LA+VT  TNW+ QA   R R
Sbjct:   439 GLWIGIQAGAVLQTLLLALVTGCTNWESQADKARNR 474

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 70/156 (44%), Positives = 99/156 (63%)

Query:     6 SIRVSNELGAGNPQPXXXXXXXXXXXXXXXXXXXXXXLFCSRYVLAYAFNSDQDVVKYVS 65
             S R+SNELGAGN +                       L   + +L   F+SD++ + YV+
Sbjct:   316 STRISNELGAGNSRAAHIVVYAAMSLAVVDALMVGTSLLAGKNLLGQVFSSDKNTIDYVA 375

Query:    66 RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
             ++APL+SI++ +D++Q VLSGVA G GWQHIGAYIN GAFYL GIP+A  L F VHL+  
Sbjct:   376 KMAPLVSISLILDSLQGVLSGVASGCGWQHIGAYINFGAFYLWGIPIAASLAFWVHLKGV 435

Query:   126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRER 161
             GL +G+++G+ +Q + LA+VT   NW+ QA   R+R
Sbjct:   436 GLWIGIIAGAVLQTLLLALVTGCINWENQAREARKR 471

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 68/156 (43%), Positives = 97/156 (62%)

Query:     6 SIRVSNELGAGNPQPXXXXXXXXXXXXXXXXXXXXXXLFCSRYVLAYAFNSDQDVVKYVS 65
             S  V+NELGAGNP+                       LF SR V  YA+++ ++V+ YV+
Sbjct:   313 STNVANELGAGNPRGARDSAAAAIIIAAVESVIVSSSLFLSRSVWPYAYSNVEEVISYVT 372

Query:    66 RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
              + P+L I+I MD+  +VLSG+ RG GWQ IGAY+N+ ++Y++GIPV  +LCF +H   K
Sbjct:   373 DITPILCISILMDSFLTVLSGIVRGTGWQKIGAYVNITSYYVIGIPVGLLLCFHLHFNGK 432

Query:   126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRER 161
             GL  GL++GST+Q + L +V   TNW K+A   RER
Sbjct:   433 GLWAGLVTGSTLQTLILFLVIGFTNWSKEAIKARER 468

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2010926 AT1G64820 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 67/165 (40%), Positives = 102/165 (61%)

Query:     6 SIRVSNELGAGNPQPXXXXXXXXXXXXXXXXXXXXXXLFCSRYVLAYAFNSDQDVVKYVS 65
             S  VSNELGAGN +                       L+  R    Y F+++++VV+Y +
Sbjct:   314 STHVSNELGAGNHRAARAAVNSAIFLGGVGALITTITLYSYRKSWGYVFSNEREVVRYAT 373

Query:    66 RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
             ++ P+L ++IF+++  +VLSGVARG GWQ IG Y +LG++YLVGIP+ + LCF + LR K
Sbjct:   374 QITPILCLSIFVNSFLAVLSGVARGSGWQRIGGYASLGSYYLVGIPLGWFLCFVMKLRGK 433

Query:   126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTE 170
             GL +G++  ST+Q +  A+VT  TNW+++AT  R+R  E  P  +
Sbjct:   434 GLWIGILIASTIQLIVFALVTFFTNWEQEATKARDRVFEMTPQVK 478

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA;ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 72/158 (45%), Positives = 96/158 (60%)

Query:     6 SIRVSNELGAGNPQPXXXXXXXXXXXXXXXXXXXXXXLFCSRYVLAYAFNSDQDVVKYVS 65
             S RV+NELGAGNP+                       +F +R V  Y F+S+ +VV YV 
Sbjct:   311 STRVANELGAGNPKQARMAVYTAMVITGVESIMVGAIVFGARNVFGYLFSSETEVVDYVK 370

Query:    66 RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
              +APLLS+++  D + + LSGVARG G Q IGAY+NL A+YL GIP A +L F   +R +
Sbjct:   371 SMAPLLSLSVIFDALHAALSGVARGSGRQDIGAYVNLAAYYLFGIPTAILLAFGFKMRGR 430

Query:   126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTL 163
             GL +G+  GS VQAV L ++  LTNW+KQA   RER +
Sbjct:   431 GLWIGITVGSCVQAVLLGLIVILTNWKKQARKARERVM 468

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2050230 AT2G04100 "AT2G04100" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 72/166 (43%), Positives = 98/166 (59%)

Query:     6 SIRVSNELGAGNPQPXXXXXXXXXXXXXXXXXXXXXXLFCSRYVLAYAFNSDQDVVKYVS 65
             SIRVSNELGAGNP+                       LF  R +  YAF++ ++VV YV+
Sbjct:   315 SIRVSNELGAGNPEVARLAVFAGIFLWFLEATICSTLLFICRDIFGYAFSNSKEVVDYVT 374

Query:    66 RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
              L+PLL I+  +D   +VL GVARG GWQHIGA+ N+ A+YL+G PV   L F  H+  K
Sbjct:   375 ELSPLLCISFLVDGFSAVLGGVARGSGWQHIGAWANVVAYYLLGAPVGLFLGFWCHMNGK 434

Query:   126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTEN 171
             GL +G++ GST Q + LA+VT+  +W +QA   R+R +    S  N
Sbjct:   435 GLWIGVVVGSTAQGIILAIVTACMSWNEQAAKARQRIVVRTSSFGN 480

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 74/166 (44%), Positives = 100/166 (60%)

Query:     6 SIRVSNELGAGNPQPXXXXXXXXXXXXXXXXXXXXXXLFCSRYVLAYAFNSDQDVVKYVS 65
             S RVSN+LGAGNPQ                       LF  R ++ Y F++ ++VV YV+
Sbjct:   312 STRVSNKLGAGNPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYTFSNSKEVVDYVA 371

Query:    66 RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
              ++PLL ++  +D + +VL+GVARG GWQHIGA IN+ A+YLVG PV   L F+     K
Sbjct:   372 DISPLLCLSFILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGK 431

Query:   126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRERTLEGAPSTEN 171
             GL  G+M GS VQA  LA+VT+  NW++QA   R+R +    STEN
Sbjct:   432 GLWCGVMVGSAVQATLLAIVTASMNWKEQAEKARKRII----STEN 473

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	6e-55
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	1e-20
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	4e-20
pfam01554	161	pfam01554, MatE, MatE	2e-17
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	7e-15
PRK01766	456	PRK01766, PRK01766, multidrug efflux protein; Revi	2e-14
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	1e-08
cd13142	444	cd13142, MATE_like_12, Uncharacterized subfamily o	1e-08
cd13139	448	cd13139, MATE_like_14, Uncharacterized subfamily o	2e-08
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	2e-07
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	2e-07
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	3e-07
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	9e-07
PRK00187	464	PRK00187, PRK00187, multidrug efflux protein NorA;	1e-06
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	3e-06
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	4e-05
cd13149	434	cd13149, MATE_like_2, Uncharacterized subfamily of	6e-04
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	0.001
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	0.002
cd13146	433	cd13146, MATE_like_6, Uncharacterized subfamily of	0.004

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  178 bits (455), Expect = 6e-55
 Identities = 71/150 (47%), Positives = 103/150 (68%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S+RV NELGAGNP+ A+LA  VA+ L++    +V+I L   R V AY F SD++V+  V+
Sbjct: 285 SVRVGNELGAGNPKRAKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVA 344

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            L P+L++    D +Q+VLSGV RG G Q +GAY+NL A+YL+G+PV  +L F + L  K
Sbjct: 345 DLLPILALFQIFDGLQAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLK 404

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQKQA 155
           GL +GL++G  +QAV L ++   T+W K+A
Sbjct: 405 GLWIGLIAGLILQAVILLLIILRTDWDKEA 434

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 87.2 bits (217), Expect = 1e-20
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 6/142 (4%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           ++RV   LGAG+P  AR A  V + L V  AA+ ++ L      +A  + +D  V+    
Sbjct: 289 TVRVGFALGAGDPADARRAGLVGLGLGVGFAALTALLLLLFPEQIAGLYTNDPAVIAL-- 346

Query: 66  RLAPLLSIAIF---MDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHL 122
             A LL  A      D +Q V +G  RG     +   + L +++ +G+P+ Y+L F   L
Sbjct: 347 -AASLLVFAALFQLFDGIQVVAAGALRGYKDTRVPFLLALISYWGIGLPLGYLLAFTTGL 405

Query: 123 RTKGLLLGLMSGSTVQAVALAV 144
              G+ +GL+ G  + A+ L  
Sbjct: 406 GAFGVWIGLIIGLALAAILLLW 427

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 85.7 bits (213), Expect = 4e-20
 Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 1/148 (0%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           +I V   LGAGN + AR A R+A+ L++  A ++++ L   R  +   F +D +V+    
Sbjct: 301 TILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAV 360

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
            L  + ++    D +Q VLSGV RG G   I   I+L +++   +P+AY+L F   L   
Sbjct: 361 ILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGF-FFLGLA 419

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQK 153
           G+ +G      ++A+ L +      W++
Sbjct: 420 GVWIGFPLSLILRAILLLLRLRRGRWRR 447

Length = 455

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 74.5 bits (184), Expect = 2e-17
 Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 1/110 (0%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           +  V   LGAGN + A +A R  + L++  +  +++ +   R  +   F  D++V++  S
Sbjct: 53  TTLVGQALGAGNFKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELAS 112

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYV 115
           +   +L++ I   ++Q VLSG  RG G      YINL +  L+ IP+ Y+
Sbjct: 113 KYLRILALGIPFLSLQFVLSGFLRGAGDTKPPLYINLIS-LLLNIPLNYL 161

The MatE domain. Length = 161

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 71.0 bits (175), Expect = 7e-15
 Identities = 43/147 (29%), Positives = 70/147 (47%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S  V   LGAG+P  AR   + A+ L V    ++ + LF     LA  F  D +V++   
Sbjct: 286 STLVGQNLGAGDPDEARRYGKRALRLGVLFMGLLGLLLFIFAPPLASLFTPDPEVIELGV 345

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
               +++++     +  VLSG  RG G       INL + +LV +P+AY+L F + L   
Sbjct: 346 LYLRIVALSQPFLAISFVLSGALRGAGDTRPPLIINLISMWLVRLPLAYLLGFVLGLGLT 405

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQ 152
           G+ L +   + V+A+ L        W+
Sbjct: 406 GIWLAMFVDTIVRAILLLYRFRKGKWK 432

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed

 Score = 69.8 bits (172), Expect = 2e-14
 Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 4/141 (2%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           +IRV  ELGAG    AR    + +A+ +  A + +I L   R  +A  +  D +VV   S
Sbjct: 299 TIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALAS 358

Query: 66  RLAPLLSIAIF--MDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLR 123
            L  LL  A+F   D +Q + SG  RG     +  +I   A++++G+P+ Y+L     + 
Sbjct: 359 HL--LLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMG 416

Query: 124 TKGLLLGLMSGSTVQAVALAV 144
             G  +GL+ G T  A+ L +
Sbjct: 417 PFGFWIGLIIGLTAAAILLLL 437

Length = 456

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           SI V   LGAG+P+ A+   RVA+ L++    +++I L   R  +A  F +D +V++  +
Sbjct: 276 SILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAA 335

Query: 66  RLAPLLS 72
                ++
Sbjct: 336 IYLIFVA 342

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 32/148 (21%), Positives = 61/148 (41%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
           S  V   LGAG    A    + A  L      I  +  F     +   F +D +V+K  +
Sbjct: 297 STMVGQNLGAGQIDRAEEIVKKAALLIFLILVIGGVLAFLFAEPIVRVFINDPEVIKEGA 356

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
               +++ +     +  V++G  RG G       I++   +++ IP+AY+L + + L   
Sbjct: 357 DFLRIVAPSFPFFGLFQVINGAFRGSGHTLTAMIISILRLWVIRIPLAYLLAYVLGLGVT 416

Query: 126 GLLLGLMSGSTVQAVALAVVTSLTNWQK 153
           G+ + +   + V A+          W+K
Sbjct: 417 GIWIAMAISNIVAALIALAWFKRGTWKK 444

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 444

>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 39/141 (27%), Positives = 60/141 (42%)

Query: 13  LGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLS 72
           LGAG P  A  +   A    +    IVS+  F     L   F +D +V+        ++S
Sbjct: 306 LGAGQPDRAEKSVWRAGKYNMVFLGIVSLVFFLFAEPLVSFFTTDPEVIAIAVEALRIIS 365

Query: 73  IAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLM 132
           +         VLS    G G       INL  F+L  IP+AY+L   ++L  KG+ + + 
Sbjct: 366 LGYIFYGYGMVLSQAFNGAGDTKTPTLINLVGFWLFQIPLAYLLARHLNLGPKGVFIAIP 425

Query: 133 SGSTVQAVALAVVTSLTNWQK 153
              TV A+A  ++     W+ 
Sbjct: 426 IAETVLAIAAIILFRRGKWKT 446

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 448

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 37/144 (25%), Positives = 55/144 (38%), Gaps = 8/144 (5%)

Query: 5   CSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQD---VV 61
            S  V   LGAG P  A   TR  + LA+A   ++ I       +L   F    D   + 
Sbjct: 290 VSSLVGQALGAGRPDLAMRVTRRGLKLALAYMLLLGILFLLFPELLLSIFTPGADFALIA 349

Query: 62  KYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVH 121
           +    L   ++  I  D +  V +G  RG G         L   +L  +P AY+L     
Sbjct: 350 ELAVPLLRFVAAYILFDALALVFAGALRGAGDTRFVMLAELIVAWLYLLPPAYLLVVL-- 407

Query: 122 LRTKGLLLGLMSGSTVQAVALAVV 145
                 L G  +  TV  + LA++
Sbjct: 408 ---GAGLAGAWTVETVYVIVLALI 428

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 32/140 (22%), Positives = 64/140 (45%)

Query: 13  LGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLS 72
           +GAG  + A+   R  + +++    I+ + +F     L   F SD +V++  +    + S
Sbjct: 292 IGAGKIERAKKGLRTGIIISLIIGLIIILLVFFFAPQLLGLFTSDPEVIEIGAEYLRIYS 351

Query: 73  IAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLM 132
           I   +  +  V +G+ RG+G       I++   +LV IP+AY+L     L   G+ L + 
Sbjct: 352 IDYILFGILFVFNGLFRGLGKTKFPMIISILRLWLVRIPLAYLLSRLTGLGLFGIWLAMP 411

Query: 133 SGSTVQAVALAVVTSLTNWQ 152
             + + A+   +      W+
Sbjct: 412 ISNILSAIICIIYYRKGRWK 431

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 1/140 (0%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVS 65
              V   LGAGN   AR  T VA+ + +   A++ + +      +   F +D + ++   
Sbjct: 280 LPVVGQNLGAGNFDRARRITWVALLIGLLIGAVLGLLILLFPEPILSLFTNDPEFLELAV 339

Query: 66  RLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTK 125
               +L+I      +  VL    +  G       ++L ++++V +P+AYVL   + L   
Sbjct: 340 SYLRILAIYYLFVGIGYVLQAGFQAAGRTLKSLIVSLLSYWVVRLPLAYVL-AYLGLGLY 398

Query: 126 GLLLGLMSGSTVQAVALAVV 145
           G+ L L+    + A+ L + 
Sbjct: 399 GIWLALVISLILAALVLLLF 418

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 47.1 bits (113), Expect = 9e-07
 Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 10/134 (7%)

Query: 5   CSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYV 64
             I V + +GAG+   A      ++ + +  +  V++ L   R  +   F  D +++   
Sbjct: 287 TQIIVGHLVGAGDFDEAYKRVLKSLKIGLLVSLAVALLLALFREPILGLFTDDPEIIAL- 345

Query: 65  SRLAPLLSIAIFMD-----NMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFA 119
                LL I+I ++     N+  VL G  R  G       I + + + + +P+AY+L   
Sbjct: 346 --GKTLLLISILLEPGRAFNI--VLIGSLRAAGDARFPVLIGIISMWGISVPLAYLLGIV 401

Query: 120 VHLRTKGLLLGLMS 133
           + L   G+ +   +
Sbjct: 402 LGLGLLGVWIAFAA 415

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 5/142 (3%)

Query: 6   SIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAF--NSDQDVVKY 63
           ++RV    GAG    AR A RV +        + +   +     +   F   +D    + 
Sbjct: 296 TMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEI 355

Query: 64  VSRLAPLLSIAI---FMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAV 120
           V     LL++A      D  Q++  G  RG+        I L  ++LVG P+A++L F +
Sbjct: 356 VQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTL 415

Query: 121 HLRTKGLLLGLMSGSTVQAVAL 142
                G+  GL  G    AVAL
Sbjct: 416 GWGAVGVWWGLALGLACAAVAL 437

Length = 464

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 24/108 (22%), Positives = 49/108 (45%)

Query: 9   VSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLA 68
           +    GAGN    + A ++A+ +A+    ++ + L      +   F  D +++   +R+ 
Sbjct: 290 IGYNYGAGNYDRVKQALKLALIVALIYGLVLFLILLLFPEQIVSLFTDDPELIALAARIL 349

Query: 69  PLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVL 116
            +  +A  +  +  VLSG  + IG     A ++L    L  IP+  +L
Sbjct: 350 RIFLLAFPLAGINIVLSGYFQAIGKAKRAALLSLLRQGLFLIPLLLIL 397

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 21/100 (21%), Positives = 41/100 (41%)

Query: 5   CSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYV 64
            SI ++  LGA + + AR    VA+   +    + S+ L      L        +++   
Sbjct: 62  TSILIAQYLGAKDKKKARQIAGVALLFNLLLGLVFSLLLLFFGAELLRLMGLPPELLALG 121

Query: 65  SRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGA 104
           S    ++  ++F+  +   LS + R  G   I  Y++L  
Sbjct: 122 STYLRIVGGSLFLQALSLTLSAILRSHGRTKIPMYVSLIM 161

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 3/139 (2%)

Query: 9   VSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLA 68
           V    GAG  +  +   ++++  ++   AI+ I L      LA  F+++ +V++ ++   
Sbjct: 297 VGQNWGAGQYERVQEGLKISLKFSLIYGAILGIVLALFAGWLASLFSAEPEVIELITLYL 356

Query: 69  PLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLL 128
            ++ I      +  + S     +G       +NL   +L+ IP+AYV    +     G+ 
Sbjct: 357 LIVPIGYGGLGILIITSASFNALGKPLYSLGLNLIRVFLLYIPLAYVGSHLLGFA--GVF 414

Query: 129 LGLMSGSTVQAVALAVVTS 147
           +G ++G+ + A  LA   +
Sbjct: 415 IGALAGNLI-AGILAYFIA 432

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 434

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 1/114 (0%)

Query: 5   CSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYV 64
            ++ V+  +GAG+ + A+      + LA+    +++I L      L     +  +V++  
Sbjct: 76  TTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELA 135

Query: 65  SRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCF 118
           +    ++ +      +  VLSG+ RG+G      YI L    L+ I + Y+L F
Sbjct: 136 AEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGN-LLNIVLNYLLIF 188

Length = 455

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 1/104 (0%)

Query: 13  LGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLS 72
           LGAG+ + AR   R  +   +    ++++  F     +   F  D  V+   +   P L+
Sbjct: 292 LGAGDRKAARRVARRLLQWGLGLGVLLALLFFLGGEPIIRLFTDDPAVLALAATYLPWLA 351

Query: 73  IAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVL 116
           +   +  +  VL G+  G           L +   V +P+ ++L
Sbjct: 352 LLPPIGALAFVLDGIFIGATDTRYLRNSMLVSL-AVFLPLLFLL 394

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 23/126 (18%), Positives = 47/126 (37%)

Query: 14  GAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSI 73
           G GN          AV L +    ++ +        L   F +  +VV Y       +++
Sbjct: 300 GRGNYDRMLQILMTAVILGIVVVLVLVLGYVLVAPWLFSLFTTVPEVVAYAVLQVRTMAL 359

Query: 74  AIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMS 133
           A+    +  +++   + IG       + L     + +PV Y+L +       G+  G++S
Sbjct: 360 ALPFVAISILVTEFFQAIGKAWPSLLLTLIRHVFLSVPVVYLLAYVFGKGITGVYFGIVS 419

Query: 134 GSTVQA 139
            +   A
Sbjct: 420 ANFFTA 425

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 433

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.95
PRK10189	478	MATE family multidrug exporter; Provisional	99.95
PRK00187	464	multidrug efflux protein NorA; Provisional	99.93
PRK01766	456	multidrug efflux protein; Reviewed	99.93
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.9
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.9
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.9
PRK10189	478	MATE family multidrug exporter; Provisional	99.89
PRK00187	464	multidrug efflux protein NorA; Provisional	99.89
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.89
PRK01766	456	multidrug efflux protein; Reviewed	99.86
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.84
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.8
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.78
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.72
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.7
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.69
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.42
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.41
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.4
PRK15099	416	O-antigen translocase; Provisional	99.4
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.32
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.29
PRK15099	416	O-antigen translocase; Provisional	99.19
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.12
PRK10459	492	colanic acid exporter; Provisional	98.94
COG2244	480	RfbX Membrane protein involved in the export of O-	98.89
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	98.7
COG0728	518	MviN Uncharacterized membrane protein, putative vi	98.45
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.41
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	97.93
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	97.92
PRK10459	492	colanic acid exporter; Provisional	97.87
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.75
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	97.03
COG2244	480	RfbX Membrane protein involved in the export of O-	96.6
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	96.34
COG4267	467	Predicted membrane protein [Function unknown]	93.74

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.95  E-value=2.3e-26  Score=185.75  Aligned_cols=157  Identities=29%  Similarity=0.414  Sum_probs=150.8

Q ss_pred             CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 035802            1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNM   80 (174)
Q Consensus         1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (174)
                      +++|+++++||++|+||+|++|+..+.+..+++.++++.+++++++++++.++|++|||+.+.+.+++++.+...+++++
T Consensus       296 i~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~  375 (455)
T COG0534         296 IAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGI  375 (455)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 035802           81 QSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQKQATMV  158 (174)
Q Consensus        81 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (174)
                      +.+..+++||.||++.+++.++.+.|++++|+.|++.+.. +|..|+|++...++.++.+....++++++|++...+.
T Consensus       376 ~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (455)
T COG0534         376 QFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA  452 (455)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            9999999999999999999999999999999999998766 9999999999999999999999999999998876553

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.95  E-value=9.5e-27  Score=189.16  Aligned_cols=153  Identities=16%  Similarity=0.144  Sum_probs=148.4

Q ss_pred             CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 035802            1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNM   80 (174)
Q Consensus         1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (174)
                      +++|+++++||++|+||+|++|+..+.+..+++.++++++++++++++++.++|++|+|+.+.+..++++.+...+++++
T Consensus       314 i~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~  393 (478)
T PRK10189        314 LGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAA  393 (478)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 035802           81 QSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQK  153 (174)
Q Consensus        81 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~  153 (174)
                      +.+..+.+||.||++.++++++++.|++.+|..|++.+..++|+.|+|++..+++.+.+++..+++++++|++
T Consensus       394 ~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~  466 (478)
T PRK10189        394 SWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW  466 (478)
T ss_pred             HHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence            9999999999999999999999999999999999998888899999999999999999999999999999988

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.93  E-value=2.3e-24  Score=174.71  Aligned_cols=147  Identities=24%  Similarity=0.371  Sum_probs=138.0

Q ss_pred             CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccC--ch---HHHHHHHHHHHHHHHHH
Q 035802            1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNS--DQ---DVVKYVSRLAPLLSIAI   75 (174)
Q Consensus         1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~---~~~~~~~~~l~~~~~~~   75 (174)
                      ++.|+++++||++|+||+|++++..+.++.+++.++++++++++++++++.++|++  ||   |+.+.+..++++..++.
T Consensus       291 i~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~  370 (464)
T PRK00187        291 LSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFE  370 (464)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999974  44   78999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 035802           76 FMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTS  147 (174)
Q Consensus        76 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~  147 (174)
                      ++++++.++.+++||.||++.++..++++.|++++|+.|++.+.+++|+.|+|+++.+++.+..++....++
T Consensus       371 ~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~  442 (464)
T PRK00187        371 LFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE  442 (464)
T ss_pred             HhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888899999999999999998887766553

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.93  E-value=3.7e-24  Score=173.08  Aligned_cols=152  Identities=28%  Similarity=0.409  Sum_probs=145.0

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      +.|+++++||++|+||++++|+..+.++.+++.++++++++++.+++++.++|++|||+.+.+.+++++..+..++++++
T Consensus       295 ~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~  374 (456)
T PRK01766        295 AMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQ  374 (456)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 035802           82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQK  153 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~  153 (174)
                      .+..+++||.||++.++..++++.|++++|..|++.+..++|+.|+|+++.+++.+.+++..+++++.+|+.
T Consensus       375 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (456)
T PRK01766        375 VIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP  446 (456)
T ss_pred             HHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998899999999998888899999999999999999998888887776554

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.90  E-value=1.7e-22  Score=163.36  Aligned_cols=150  Identities=21%  Similarity=0.265  Sum_probs=143.9

Q ss_pred             CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 035802            1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNM   80 (174)
Q Consensus         1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (174)
                      ++.|+++++||++|+||++++++..++++.+++.++++++++.+.+++++..++++++|+.+.+.+|+++...+.|+..+
T Consensus        72 l~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~  151 (455)
T COG0534          72 LGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALL  151 (455)
T ss_pred             HHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHH-cC-CCcchhHHHHHHHHHHHHHHHHHHHhhcCH
Q 035802           81 QSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFA-VH-LRTKGLLLGLMSGSTVQAVALAVVTSLTNW  151 (174)
Q Consensus        81 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~-~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~  151 (174)
                      ..++.+++||.||++.++.+.+++ .+.|+.++|+++++ ++ +|+.|+.+|+.+++.+..++..+++++++.
T Consensus       152 ~~~~~~~lr~~G~~~~~m~~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~  223 (455)
T COG0534         152 SFVLSGILRGLGDTKTPMYILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR  223 (455)
T ss_pred             HHHHHHHHHhcCCCchhHHHHHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            999999999999999999999999 89999999999998 56 999999999999999999999988887764

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.90  E-value=2e-22  Score=162.52  Aligned_cols=146  Identities=14%  Similarity=0.139  Sum_probs=138.4

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      +.++++++||++|+||+|++++..++++.+++++++++.++...+.+++..+++.|||+.+.+.+|+++..++.|+..+.
T Consensus        66 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~  145 (441)
T PRK10367         66 RMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLAN  145 (441)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802           82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL  148 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  148 (174)
                      .++.+++||.||++.++..++++ .+++++++|++.+..++|+.|+++++.+++.+..++..+++++
T Consensus       146 ~~~~~~lr~~G~~~~~~~~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~  211 (441)
T PRK10367        146 LVLLGWLLGVQYARAPVILLVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK  211 (441)
T ss_pred             HHHHHHHHHcccchHHHHHHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 7899999999999889999999999999999988877666654

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.90  E-value=1.9e-22  Score=163.16  Aligned_cols=145  Identities=17%  Similarity=0.172  Sum_probs=134.7

Q ss_pred             CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccC-chHHHHHHHHHHHHHHHHHHHHH
Q 035802            1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNS-DQDVVKYVSRLAPLLSIAIFMDN   79 (174)
Q Consensus         1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~-~~~~~~~~~~~l~~~~~~~~~~~   79 (174)
                      ++.|+++++||++|+||+|++|+..+.++.+++..+++++++++++++++.++|++ |||+.+.+.+++++..++.++++
T Consensus       290 i~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~  369 (453)
T PRK09575        290 IAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDG  369 (453)
T ss_pred             HHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999995 89999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802           80 MQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL  148 (174)
Q Consensus        80 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  148 (174)
                      ++.+..+++||.||++.+++.++.. +++++|..|++..  .+|+.|+|+++.+++.+..++....+++
T Consensus       370 ~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~  435 (453)
T PRK09575        370 FLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWR  435 (453)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887 6889999999854  3799999999999999988877766654

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.89  E-value=1e-21  Score=159.80  Aligned_cols=147  Identities=20%  Similarity=0.219  Sum_probs=136.7

Q ss_pred             CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhcc--CchHHHHHHHHHHHHHHHHHHHH
Q 035802            1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFN--SDQDVVKYVSRLAPLLSIAIFMD   78 (174)
Q Consensus         1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~~~~~~~~~~~~l~~~~~~~~~~   78 (174)
                      +++|+++++||++|+||+|++++..++++.+++.++++.+++.+++++++..+|+  .|||+.+.+.+|+++..++.|+.
T Consensus        84 l~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~  163 (478)
T PRK10189         84 IDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAA  163 (478)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999999999999999999999995  69999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHH----cCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802           79 NMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFA----VHLRTKGLLLGLMSGSTVQAVALAVVTSL  148 (174)
Q Consensus        79 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  148 (174)
                      .+..++.+++||.||++.++.+++++ ++++++++|.+++.    +++|+.|+|+++.+++.+..++..+++.+
T Consensus       164 ~~~~~~~~~lr~~G~~~~~~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~  236 (478)
T PRK10189        164 AITLIGSGALRGAGNTKIPLLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI  236 (478)
T ss_pred             HHHHHHHHHHHhcCchHHhHHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999997 89999999999875    37899999999999999988877665543

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.89  E-value=1.5e-21  Score=158.31  Aligned_cols=146  Identities=21%  Similarity=0.132  Sum_probs=132.7

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      +.|+++++||++|+||+|++++..+.++.++++++++..++.+ +.+++..+|+.|||+.+.+.+|+++..++.|+..+.
T Consensus        66 ~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~  144 (464)
T PRK00187         66 IAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSF  144 (464)
T ss_pred             HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688999999999999999999999999999999998887765 679999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHH----cCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 035802           82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFA----VHLRTKGLLLGLMSGSTVQAVALAVVTSLT  149 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~  149 (174)
                      ..+++++||.||++.+++.++++ .+++++.+|++++.    +++|+.|+++++.+++....+....+++++
T Consensus       145 ~~~~~~l~~~g~~~~~~~~~~~~-~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~  215 (464)
T PRK00187        145 MALRGFTSALGRAGPVMVISLAG-AVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH  215 (464)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHH-HHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999 78899999999875    258999999999999888776665555543

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.89  E-value=1.3e-21  Score=158.27  Aligned_cols=147  Identities=14%  Similarity=0.049  Sum_probs=139.4

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      +.++++++||++|+||+|++++..++++.+++.+++++.++.+.+++++..+|+.|+|+.+.+.+|+++.+++.|+..+.
T Consensus        69 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~  148 (453)
T PRK09575         69 GMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGA  148 (453)
T ss_pred             hccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 035802           82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLT  149 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~  149 (174)
                      ..+.+++|+.|+++.+++.++.+ .+++++++|++++.+++|+.|+|+++.+++.+..++..++++++
T Consensus       149 ~~~~~~l~~~g~~~~~~~~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~  215 (453)
T PRK09575        149 IALPFLLRNDESPNLATGLMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS  215 (453)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999 79999999999988899999999999999999988877666543

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.86  E-value=6.7e-20  Score=148.31  Aligned_cols=148  Identities=17%  Similarity=0.162  Sum_probs=137.8

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      +.+.++++||++|++|+|++++..++++.+++.++++++++.+.+++++..+|+.|||+.+.+.+|+++.+++.|+..+.
T Consensus        68 ~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~  147 (456)
T PRK01766         68 LLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLY  147 (456)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHH----cCCCcchhHHHHHHHHHHHHHHHHHHHhhcC
Q 035802           82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFA----VHLRTKGLLLGLMSGSTVQAVALAVVTSLTN  150 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~  150 (174)
                      .++++++||.||++.++..++++ .++++++++++++.    +.+|+.|+++++.+++.+..++..+++++++
T Consensus       148 ~~~~~~l~~~g~~~~~~~~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~  219 (456)
T PRK01766        148 QVLRSFIDGLGKTKPTMVIGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR  219 (456)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            99999999999999999999999 68899999999764    4689999999999999999888877766543

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.84  E-value=1.3e-19  Score=146.11  Aligned_cols=145  Identities=15%  Similarity=0.111  Sum_probs=119.6

Q ss_pred             CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 035802            1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNM   80 (174)
Q Consensus         1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (174)
                      +++|+++++||++|+||+|++|+..+.+..++++++.+++++++.+++++..+|++|||+.+.+.+++++..+..+....
T Consensus       287 l~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~  366 (441)
T PRK10367        287 FAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVW  366 (441)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36799999999999999999999999999999999999999999999999999999999999999999998876443334


Q ss_pred             HHHHHHHHHhcC---cchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 035802           81 QSVLSGVARGIG---WQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQK  153 (174)
Q Consensus        81 ~~~~~~~l~g~g---~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~  153 (174)
                      ..+..++++|.+   |++.++++++++.|...++.       +.+|+.|+|++..+++.++++++..++++ +|+|
T Consensus       367 ~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~-------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~-~~~~  434 (441)
T PRK10367        367 CYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL-------PWLGNHGLWLALTVFLALRGLSLAAIWRR-HWRN  434 (441)
T ss_pred             HHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH-------HHcCchHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            444444444444   59999999999976422222       24799999999999999998887765444 4744

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.80  E-value=7.4e-18  Score=131.31  Aligned_cols=146  Identities=21%  Similarity=0.199  Sum_probs=136.1

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      +++..+.++++.|++|+|++++..+....+.+.++++++++.+++++++..+++.|++..+.+.+++++++++.++..+.
T Consensus        49 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~  128 (342)
T TIGR00797        49 GTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLN  128 (342)
T ss_pred             HHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHH-HcC-CCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802           82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCF-AVH-LRTKGLLLGLMSGSTVQAVALAVVTSL  148 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~  148 (174)
                      .+..+++|+.||++.++..++++ .+++++.++++.+ ..+ +|..|+++++.+++.+..++..++.++
T Consensus       129 ~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~  196 (342)
T TIGR00797       129 FVLRGFLRGQGDTKTPMYITLIG-NVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK  196 (342)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHH-HHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998 6889999998876 566 789999999999999988887766664

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.78  E-value=1.1e-19  Score=127.42  Aligned_cols=114  Identities=25%  Similarity=0.461  Sum_probs=111.2

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      +.|.++++||++|++|+|++++..+.++.++.+++++++++.+++++++..+|++|+|+.+.+.+|+++..++.|+..+.
T Consensus        49 ~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (162)
T PF01554_consen   49 ATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALF  128 (162)
T ss_dssp             HHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHH
T ss_pred             cccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHH
Q 035802           82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYV  115 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~  115 (174)
                      .+..+++||.||++.++..++++.|++++|++|+
T Consensus       129 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl  162 (162)
T PF01554_consen  129 FVFSGILQGIGRTKIAMYISIISFWIINIPLAYL  162 (162)
T ss_dssp             HHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence            9999999999999999999999988999999885

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>TIGR01695 mviN integral membrane protein MviN

Probab=99.72  E-value=2.6e-16  Score=128.56  Aligned_cols=145  Identities=13%  Similarity=0.096  Sum_probs=133.0

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccC----chHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNS----DQDVVKYVSRLAPLLSIAIFM   77 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~~~~~~~~~l~~~~~~~~~   77 (174)
                      +.+..|.+||+.|+||+|++++..+++..+...+++++++.++.+++++..+|.+    |+|..+.+..++++++++.++
T Consensus       280 ~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~  359 (502)
T TIGR01695       280 STVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIF  359 (502)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999999876    678888999999999999999


Q ss_pred             HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 035802           78 DNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLT  149 (174)
Q Consensus        78 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~  149 (174)
                      .+++.++.+.+++.||++.++..++.+ .++++++++++..  .+|..|+|+++.+++.+..++..++.+|+
T Consensus       360 ~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~  428 (502)
T TIGR01695       360 YSLQKVLLRAFYARKDTRTPFINSVIS-VVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR  428 (502)
T ss_pred             HHHHHHHHHhhHhccCCccCHHHHHHH-HHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998 6889999998854  47899999999999999988887766654

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.70  E-value=5e-18  Score=137.38  Aligned_cols=168  Identities=43%  Similarity=0.697  Sum_probs=158.3

Q ss_pred             CchhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 035802            1 TEIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNM   80 (174)
Q Consensus         1 l~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (174)
                      ++.|+++.+++.+|+++++++|.....+...++.++...+...+.+++.+.++|++|+|+.+...+..++++.+.+.++.
T Consensus       304 ~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~  383 (473)
T KOG1347|consen  304 FSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNAL  383 (473)
T ss_pred             hhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 035802           81 QSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTNWQKQATMVRE  160 (174)
Q Consensus        81 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (174)
                      +.++.|+.+|.|..+....+++.++.++.+|....+.+..++|..|+|.+...+.......+.....+++|++..++.+.
T Consensus       384 q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~  463 (473)
T KOG1347|consen  384 QAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFA  463 (473)
T ss_pred             hhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHH
Confidence            99999999999999999999999999999999999988889999999999999988888888888899999999999888


Q ss_pred             hhccCCCC
Q 035802          161 RTLEGAPS  168 (174)
Q Consensus       161 ~~~~~~~~  168 (174)
                      |..+....
T Consensus       464 ~~~~~~~~  471 (473)
T KOG1347|consen  464 RIIASLVL  471 (473)
T ss_pred             HHHhhccC
Confidence            87665543

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.69  E-value=2e-15  Score=122.86  Aligned_cols=143  Identities=14%  Similarity=0.144  Sum_probs=130.0

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      +.+..|.++|+.|+||+|++++..++...++..++.+.++.+..+++++..+|.++++    +.++++++++..++.+++
T Consensus       292 ~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~  367 (488)
T TIGR02900       292 STALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFS  367 (488)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999887655    678899999999999999


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 035802           82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLT  149 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~  149 (174)
                      .+..+++++.||++.++..++.+ .++++++++.+...+.+|+.|+|+++.+++.+..++..+..+|.
T Consensus       368 ~~~~~~l~~~g~~~~~~~~~~~~-~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~  434 (488)
T TIGR02900       368 APLQSILQGLGKQKVALRNSLIG-AIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN  434 (488)
T ss_pred             HHHHHHHHhcCcchHHHHHHHHH-HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 78999999988655778999999999999999988888777653

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.42  E-value=1.4e-11  Score=100.45  Aligned_cols=143  Identities=20%  Similarity=0.191  Sum_probs=115.5

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      +.+....++|+.|++|+|++++..+.++.+.+..+++++++.+.+.+++...+.+|++.    ..++++..+..++..+.
T Consensus        57 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~  132 (488)
T TIGR02900        57 PVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALS  132 (488)
T ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999998877777764    35678889999999999


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHH-----cCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 035802           82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFA-----VHLRTKGLLLGLMSGSTVQAVALAVVTSLT  149 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~-----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~  149 (174)
                      .+.++++||.+|.+..+..+.++ .++++.....+.+.     .+.++.|..+++.++..+..++...+++++
T Consensus       133 ~~~~~~l~~~~~~~~~~~~~~i~-~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~  204 (488)
T TIGR02900       133 SVLKGYFQGISNMKPPAYIQVIE-QIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRK  204 (488)
T ss_pred             HHHHHHHhhhccchHhHHHHHHH-HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988 55665554444321     234566667777788877777665554443

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.41  E-value=1.7e-11  Score=99.49  Aligned_cols=144  Identities=15%  Similarity=0.135  Sum_probs=131.0

Q ss_pred             hhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccC----chHHHHHHHHHHHHHHHHHHHH
Q 035802            3 IFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNS----DQDVVKYVSRLAPLLSIAIFMD   78 (174)
Q Consensus         3 ~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~~~~~~~~~l~~~~~~~~~~   78 (174)
                      +..-|..++...+||.++.++..++++.....+.++.++.++.+++++.+++..    |+|..+...+.++++++++|+.
T Consensus       256 tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~  335 (451)
T PF03023_consen  256 TVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFY  335 (451)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            445577899999999999999999999999999999999999999999988762    6778888999999999999999


Q ss_pred             HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 035802           79 NMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLT  149 (174)
Q Consensus        79 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~  149 (174)
                      +++.++...+.+.+|++.++..++++ .++++.+++++  .+.+|..|+.+++.++..+..++....++|+
T Consensus       336 ~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l--~~~~g~~Glala~sl~~~i~~~~l~~~l~r~  403 (451)
T PF03023_consen  336 ALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILL--VPFFGVAGLALATSLSAIISALLLYILLRRR  403 (451)
T ss_pred             HHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 88999999777  4468999999999999999988888777665

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.40  E-value=1e-11  Score=100.90  Aligned_cols=147  Identities=15%  Similarity=0.135  Sum_probs=137.7

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      +.+..|+.+|++|+++++......+++...-...+.++. .++.+.+++...+++||++...+..|.++..+..+..+..
T Consensus        85 ~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~-~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~  163 (473)
T KOG1347|consen   85 QLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPIS-LLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVS  163 (473)
T ss_pred             chhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHH
Confidence            567889999999999999999999999999999999998 6677889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcC
Q 035802           82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTN  150 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~  150 (174)
                      ..+..++|+.++..+..++...+ ..++++++|++++..++|..|...+..+++.........+.....
T Consensus       164 ~~l~~~lq~Q~~~~~~~~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~  231 (473)
T KOG1347|consen  164 FPLAKFLQAQSITLPLLVIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG  231 (473)
T ss_pred             HHHHHHHHhccCchHHHHHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC
Confidence            99999999999999999999999 899999999999999999999999999999998888877765443

>PRK15099 O-antigen translocase; Provisional

Probab=99.40  E-value=9.5e-12  Score=99.78  Aligned_cols=138  Identities=14%  Similarity=0.183  Sum_probs=113.8

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      +++.+..++|+  ++|+|++++..+.++.+++..+++++++.+.+.+++...+.+||+    ...++.+..+..++..+.
T Consensus        59 ~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~  132 (416)
T PRK15099         59 FNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD----YQGVVRAVALIQMGIAWA  132 (416)
T ss_pred             cceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh----HHHHHHHHHHHHHHHHHH
Confidence            34556778888  789999999999999999999999999999999999998887776    245677777777788889


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802           82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL  148 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  148 (174)
                      ....+++||.||++.++...+++ .++++.+ +++.+.. .|+.|+.+++.+++.+..+...+++++
T Consensus       133 ~~~~~~lr~~~~~~~~~~~~~~~-~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~  196 (416)
T PRK15099        133 NLLLAILKGFRDAAGNALSLIVG-SLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIR  196 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998 6777766 4443332 499999999999999887766655544

>TIGR01695 mviN integral membrane protein MviN

Probab=99.32  E-value=1.6e-10  Score=94.50  Aligned_cols=141  Identities=13%  Similarity=0.059  Sum_probs=111.3

Q ss_pred             HhHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHH-HHHHHHHhchhhhchhcc--CchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            6 SIRVSNELGAGNP-QPARLATRVAVALAVAEAA-IVSIALFCSRYVLAYAFN--SDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         6 ~~~v~~~~G~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~lf~--~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      +.++.+..|+++. |++++....++.+...++. ++.++.+++++++..++.  .|+|..+.+.+|+++.+++.|+..+.
T Consensus        61 ~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~  140 (502)
T TIGR01695        61 SAFVPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLA  140 (502)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666655 5888878777776665554 457788889999999883  47788899999999999999999999


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhH--HHHHHHHHHHHHHHHHHHhhc
Q 035802           82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLL--LGLMSGSTVQAVALAVVTSLT  149 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~--~a~~~~~~~~~~~~~~~~~~~  149 (174)
                      .+.++++|+.||.+.+++.+++.. ++.+...++  ...++|..|+.  +++.+++.+..++..++++++
T Consensus       141 ~~~~~~l~~~~~~~~~~~~~i~~~-i~~i~~~~~--~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~  207 (502)
T TIGR01695       141 AVFGGILNARKRFFIPSFSPILFN-IGVILSLLF--FDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKA  207 (502)
T ss_pred             HHHHHHHhccCeeHHHHHHHHHHH-HHHHHHHHH--HHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            999999999999999999999984 455553333  35678888988  999999998887776665543

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.29  E-value=3.6e-10  Score=92.09  Aligned_cols=146  Identities=14%  Similarity=0.026  Sum_probs=129.3

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccC----chHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNS----DQDVVKYVSRLAPLLSIAIFM   77 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~~~~~~~~~l~~~~~~~~~   77 (174)
                      ++..-|..|++..++|.++.++..++++.+++.++++.++.+..+++++.+.+..    +++......+.+..++.++++
T Consensus       289 ~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~  368 (518)
T COG0728         289 STVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIP  368 (518)
T ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHH
Confidence            3455678899999999999999999999999999999999999999999988753    567788889999999999999


Q ss_pred             HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcC
Q 035802           78 DNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTN  150 (174)
Q Consensus        78 ~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~  150 (174)
                      .++.-++...+.+.+|+|.|+.+.+++ .++++.+++.+  .+.+|..|+..+...+.++...+.++..+|+.
T Consensus       369 ~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~~  438 (518)
T COG0728         369 FALVKLLSRVFYAREDTKTPMKIAIIS-LVVNILLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKRL  438 (518)
T ss_pred             HHHHHHHHHHHHHccCCCcChHHHHHH-HHHHHHHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999 89999999666  45678888999999988888777777666543

>PRK15099 O-antigen translocase; Provisional

Probab=99.19  E-value=9.8e-10  Score=88.17  Aligned_cols=138  Identities=11%  Similarity=0.002  Sum_probs=113.5

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCch-HHHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQ-DVVKYVSRLAPLLSIAIFMDNM   80 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~-~~~~~~~~~l~~~~~~~~~~~~   80 (174)
                      +++..|.++|+   +|.|+.++..++.......++.++++.++++++++.++|.+|+ +.   +.++++++.+..++...
T Consensus       273 ~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~---~~~~~~~l~~~~~l~~~  346 (416)
T PRK15099        273 SVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTA---MRDLFAWQLVGDVLKVG  346 (416)
T ss_pred             HHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH---HHHHHHHHHHHHHHHHH
Confidence            56788999995   6789999999999999999999999999999999999998865 21   56678887777777777


Q ss_pred             HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802           81 QSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL  148 (174)
Q Consensus        81 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  148 (174)
                      ...+...+-..++++......+.. .++++|+++++.  +.+|..|+++++.+++.+..++......+
T Consensus       347 ~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~~  411 (416)
T PRK15099        347 AYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFLL  411 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666777777777777776 889999999985  45799999999999999998877766553

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.12  E-value=9.5e-09  Score=83.50  Aligned_cols=144  Identities=13%  Similarity=0.057  Sum_probs=122.4

Q ss_pred             hhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccC--chHHHHHHHHHHHHHHHHHHHHHH
Q 035802            3 IFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNS--DQDVVKYVSRLAPLLSIAIFMDNM   80 (174)
Q Consensus         3 ~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~~~~~~~~~~l~~~~~~~~~~~~   80 (174)
                      .+..|.-.+.. +++.|++++..+....+...+.+.++++.+++++++..++.+  |+|..+.+.+.+++.++..++..+
T Consensus        35 ~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l  113 (451)
T PF03023_consen   35 AAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGL  113 (451)
T ss_pred             HHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            34557777787 889999999999999999999999999999999999999964  789999999999999999999999


Q ss_pred             HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCC---cchhHHHHHHHHHHHHHHHHHHHhhcC
Q 035802           81 QSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLR---TKGLLLGLMSGSTVQAVALAVVTSLTN  150 (174)
Q Consensus        81 ~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g---~~g~~~a~~~~~~~~~~~~~~~~~~~~  150 (174)
                      ..++.+++|+.++...+....++.+ +..+...+++  ....|   +.++.+|+.++..+..++.....+|..
T Consensus       114 ~~i~~a~L~~~~~F~~~~~~~l~~N-~~~I~~~~~~--~~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~  183 (451)
T PF03023_consen  114 SSIFSAILNAHRRFLIPALSPLLFN-LSIILSLLLL--SNSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFG  183 (451)
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHH-HHHHHHHHHH--HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999999999999998874 3334433333  33455   778889999999999888888777654

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>PRK10459 colanic acid exporter; Provisional

Probab=98.94  E-value=1e-07  Score=78.04  Aligned_cols=133  Identities=9%  Similarity=0.042  Sum_probs=111.7

Q ss_pred             hHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            7 IRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSG   86 (174)
Q Consensus         7 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   86 (174)
                      |..++.  ++|.++.++..++.......+++++++.+..+++++..++.+++  ...+...++++++...+..+......
T Consensus       270 P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~  345 (492)
T PRK10459        270 PVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGS  345 (492)
T ss_pred             HHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444553  67888999999999999999999999999999999987776543  34577889999999999999999999


Q ss_pred             HHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 035802           87 VARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVT  146 (174)
Q Consensus        87 ~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~  146 (174)
                      .+++.||++..+..+++. ..+.+|..+.+.  ..+|..|+.+++.+++.+......+..
T Consensus       346 ~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~  402 (492)
T PRK10459        346 LLLAKGRADLSFKWNVFK-TFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLM  402 (492)
T ss_pred             HHHHcCccchhHHHHHHH-HHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888 677788776663  357999999999999988877777665

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.89  E-value=1.2e-07  Score=77.42  Aligned_cols=125  Identities=14%  Similarity=0.134  Sum_probs=110.5

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      +...-|..++...++|.++.++..++...+...++.+..+.+..+++++..++..++...  +...+.++++..++..+.
T Consensus       270 ~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~--~~~~l~il~~~~~~~~~~  347 (480)
T COG2244         270 NRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYAS--AAPILQLLALAGLFLSLV  347 (480)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccc--hhHHHHHHHHHHHHHHHH
Confidence            356678999999999999999999999999999999999999999999888777654322  677899999999999999


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHH
Q 035802           82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGL  131 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~  131 (174)
                      ......+++.|+++..+..+.++ .+.++.+++.+.  +..|+.|...++
T Consensus       348 ~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~li--~~~g~~g~~~a~  394 (480)
T COG2244         348 SLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLLI--PRFGLIGAAIAT  394 (480)
T ss_pred             HHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHHH--HhhhhhhHHHHH
Confidence            99999999999999999999999 788899988884  466888888888

>TIGR00797 matE putative efflux protein, MATE family

Probab=98.70  E-value=5.7e-08  Score=75.71  Aligned_cols=70  Identities=30%  Similarity=0.437  Sum_probs=66.4

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLL   71 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~   71 (174)
                      +++..+.+++++|+||+|++++..+++..+.+.++.+.++.++++++++.++|++|||+.+.+..++++.
T Consensus       272 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  341 (342)
T TIGR00797       272 GIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV  341 (342)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            5688899999999999999999999999999999999999999999999999999999999999988764

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=98.45  E-value=2.3e-05  Score=64.42  Aligned_cols=148  Identities=12%  Similarity=0.043  Sum_probs=115.3

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhc-hhccC--chHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLA-YAFNS--DQDVVKYVSRLAPLLSIAIFMD   78 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~lf~~--~~~~~~~~~~~l~~~~~~~~~~   78 (174)
                      +++-.|.-.++..+++.|++++...........+.+..+++..++++++. .++..  |++....+....+++.|+.++.
T Consensus        67 s~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~i  146 (518)
T COG0728          67 SSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFI  146 (518)
T ss_pred             hhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence            45667888888877777888888888887888888888889999999999 55555  3555557899999999999999


Q ss_pred             HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhhcC
Q 035802           79 NMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSLTN  150 (174)
Q Consensus        79 ~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~  150 (174)
                      ++..+..++++..++...+.+.-++-+.. .+...+++....+....+..+++.++...+.++....++|..
T Consensus       147 sL~al~~aiLNs~~~F~~~a~aPvl~Nv~-~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g  217 (518)
T COG0728         147 SLSALFGAILNSRNRFFIPAFAPVLLNVS-VIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAG  217 (518)
T ss_pred             HHHHHHHHHHhccCeechhhhhHHHHHHH-HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999998887433 333333332222223456778899999999999988887653

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.41  E-value=3.4e-06  Score=57.89  Aligned_cols=79  Identities=16%  Similarity=0.193  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 035802           68 APLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTS  147 (174)
Q Consensus        68 l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~  147 (174)
                      +++++++.++..+......++++.||++..+..++.+ .++++++++.+  .+.+|..|+.+++.+++...........+
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~   78 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR   78 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999999999 89999999999  45789999999999999999888887776


Q ss_pred             hc
Q 035802          148 LT  149 (174)
Q Consensus       148 ~~  149 (174)
                      |.
T Consensus        79 k~   80 (146)
T PF14667_consen   79 KK   80 (146)
T ss_pred             HH
Confidence            64

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=97.93  E-value=0.002  Score=47.68  Aligned_cols=122  Identities=21%  Similarity=0.297  Sum_probs=80.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 035802           15 AGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQ   94 (174)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~   94 (174)
                      ++|.++.++..+.........++++.++....    ..++ ++++    ...++....+..++.......++.+++.+|.
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  120 (251)
T PF13440_consen   50 ARDKQDIRSLLRFSLLVSLLLAVILAILAILI----AYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRF  120 (251)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            45666677777776666555555554432222    2233 4444    3345667778888999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 035802           95 HIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTS  147 (174)
Q Consensus        95 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~  147 (174)
                      +......+.. ....+.....+.+ .+.+..+..++..++..+..+......+
T Consensus       121 ~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (251)
T PF13440_consen  121 RAYALIDIVR-SLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLR  171 (251)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999888 4444444333333 3347778888888888877666555443

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=97.92  E-value=0.00029  Score=58.72  Aligned_cols=128  Identities=8%  Similarity=-0.043  Sum_probs=101.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhH
Q 035802           18 PQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIG   97 (174)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~   97 (174)
                      .+++.+.+...+.+...+++++..+.....+.++.++..+.=....+.+.++.+..+.|+.+++.+..++.++..+++-.
T Consensus       338 ~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l  417 (549)
T PF04506_consen  338 LKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQL  417 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHH
Confidence            46688888888899999998888888888888888876432222235778999999999999999999999999987643


Q ss_pred             H----HHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802           98 A----YINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL  148 (174)
Q Consensus        98 ~----~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  148 (174)
                      .    ++...  .++.+..+|++..+ ++|..|.-+|..+.+..+.+....++++
T Consensus       418 ~~~~~~m~~~--S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~  469 (549)
T PF04506_consen  418 DRYNYWMVVF--SAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR  469 (549)
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3    33333  35667788888776 8999999999999999999888877654

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>PRK10459 colanic acid exporter; Provisional

Probab=97.87  E-value=0.00048  Score=56.51  Aligned_cols=115  Identities=17%  Similarity=0.180  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 035802           22 RLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYIN  101 (174)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~  101 (174)
                      ++.......+....++++.++.+.+.+++..+++ +|+.    ...+++.++..++..+.....+.+|+..+.+.....+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~  148 (492)
T PRK10459         74 HLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE  148 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence            3455666777888888888888888888877654 4553    4567888888888899999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHH
Q 035802          102 LGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALA  143 (174)
Q Consensus       102 ~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~  143 (174)
                      ... .+........+. ..+.|..+..++..++..+..+...
T Consensus       149 ~~~-~i~~~~~~i~~~-~~~~g~~~l~~~~~~~~~~~~l~~~  188 (492)
T PRK10459        149 ISA-VVAGFTFAVVSA-FFWPGALAAILGYLVNSSVRTLLFG  188 (492)
T ss_pred             HHH-HHHHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHHH
Confidence            877 444555555443 3467888888888888877665443

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.75  E-value=0.0029  Score=47.23  Aligned_cols=71  Identities=24%  Similarity=0.306  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802           76 FMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL  148 (174)
Q Consensus        76 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  148 (174)
                      ++........+++|+.++.+.....++.. .+..+.....+.. .+.++.+...+..++..+..++.....+|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (273)
T PF01943_consen  120 ILSSLSSVFSGLLQGLQRFKYIAISNIIS-SLLSLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRR  190 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888899999999999999999999888 4555555555533 33447778888888888877777766654

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.03  E-value=0.01  Score=48.02  Aligned_cols=138  Identities=14%  Similarity=0.040  Sum_probs=95.4

Q ss_pred             HHHhhcCCC---chHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            9 VSNELGAGN---PQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLS   85 (174)
Q Consensus         9 v~~~~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   85 (174)
                      -+|..-+++   .+++-.+....+.+...+++.++......++.+..+++...=....+...++++..+.|+.+++.+..
T Consensus       306 FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitE  385 (530)
T KOG2864|consen  306 FARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITE  385 (530)
T ss_pred             HHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHH
Confidence            344444444   44555566666777777777776666667777777776432222225578999999999999999999


Q ss_pred             HHHHhcCcchhHHHHH--HHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802           86 GVARGIGWQHIGAYIN--LGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL  148 (174)
Q Consensus        86 ~~l~g~g~~~~~~~~~--~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  148 (174)
                      +++.+.++.+..---+  ...+.++.+..+|++..+  +|..|.-.|..+.+.++.+....++++
T Consensus       386 aF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~  448 (530)
T KOG2864|consen  386 AFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH  448 (530)
T ss_pred             HHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998876443211  112246678889999765  466999999999998887777665553

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=96.60  E-value=0.21  Score=40.89  Aligned_cols=91  Identities=18%  Similarity=0.160  Sum_probs=61.4

Q ss_pred             hhHHhHHHHhhcCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            3 IFCSIRVSNELGAGNPQPARLA-TRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         3 ~a~~~~v~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      .+....++++..+++....+.. ......+....+.+.........+.       +++    ....+.......+.....
T Consensus        65 ~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~  133 (480)
T COG2244          65 AAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPI-------DPV----LALLLRILSLALLLLPLS  133 (480)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------Chh----hHHHHHHHHHHHHHHHHH
Confidence            4555666666666665556665 5555555555544444444433332       344    456678899999999999


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHH
Q 035802           82 SVLSGVARGIGWQHIGAYINLGA  104 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~  104 (174)
                      ....+++|+.++.+......+..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~  156 (480)
T COG2244         134 SVLRGLFQGFGRFGPLALSIVSS  156 (480)
T ss_pred             HHHHHHHHHHhhcccchhHHHHH
Confidence            99999999999999999994433

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=96.34  E-value=0.35  Score=37.67  Aligned_cols=105  Identities=15%  Similarity=0.130  Sum_probs=63.3

Q ss_pred             HHHhhcCCCchHHHHHHHHHHHHHHHHHH-HHHHHHH-hchhhh-chhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            9 VSNELGAGNPQPARLATRVAVALAVAEAA-IVSIALF-CSRYVL-AYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQSVLS   85 (174)
Q Consensus         9 v~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~i-~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   85 (174)
                      ++-.++.++.+  |+....++..+.++.. +...+-+ -+++.+ -++++-||++.+.+...+.++....+++++.....
T Consensus        72 igl~~V~s~rs--rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~q  149 (345)
T PF07260_consen   72 IGLVFVNSKRS--RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQ  149 (345)
T ss_pred             HHHHHhcchhh--hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566666533  4444333333333332 2222222 222332 36677899999999999999999999999999999


Q ss_pred             HHHHhcCcchhHHHHHHHHHHHHHHHHHHHH
Q 035802           86 GVARGIGWQHIGAYINLGAFYLVGIPVAYVL  116 (174)
Q Consensus        86 ~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l  116 (174)
                      |++-=..++......++.. .+..+.....+
T Consensus       150 GILik~r~s~iV~~aSI~~-v~~qvV~v~~l  179 (345)
T PF07260_consen  150 GILIKHRHSWIVGSASIAD-VIAQVVLVAIL  179 (345)
T ss_pred             hHhhhccceeEeehHHHHH-HHHHHHHHHHH
Confidence            9988555555555555444 33334333334

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>COG4267 Predicted membrane protein [Function unknown]

Probab=93.74  E-value=3  Score=33.53  Aligned_cols=129  Identities=15%  Similarity=0.098  Sum_probs=90.2

Q ss_pred             hhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            3 IFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQS   82 (174)
Q Consensus         3 ~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~   82 (174)
                      ...+..+|..+=+||++++.....-...+....+.+++.++++.        .+|+..     .|-..........+..=
T Consensus        82 ~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~--------~~~~si-----~yk~l~~~~FV~m~~~W  148 (467)
T COG4267          82 LIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFV--------NNQYSI-----VYKILACALFVGMSLVW  148 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhh--------cCchhH-----HHHHHHHHHHHHHHHHH
Confidence            34567788888888999999988888888888888887533211        223322     12222233334445555


Q ss_pred             HHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 035802           83 VLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFAVHLRTKGLLLGLMSGSTVQAVALAVVTSL  148 (174)
Q Consensus        83 ~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~  148 (174)
                      ....++.|+.|.+......+++ .++.+.+++++-   +.++.|.-.+..++..+..+....++.+
T Consensus       149 i~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr  210 (467)
T COG4267         149 ILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILR  210 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            5678899999999999999999 777788877764   4588999999999988876666655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	5e-29

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score =  110 bits (276), Expect = 5e-29
 Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 5/145 (3%)

Query: 5   CSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYV 64
            SIRV ++LG  + + A +A  V +   +A A I ++     R  +A  +  +Q VV   
Sbjct: 297 VSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALA 356

Query: 65  SRLAPLLSIAIFMDNMQSVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCF-----A 119
            +L    +I   MD +Q V +G  RG        +    +++++G+P  Y+L        
Sbjct: 357 MQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTE 416

Query: 120 VHLRTKGLLLGLMSGSTVQAVALAV 144
             L  KG  LG + G +  A+ L  
Sbjct: 417 QPLGAKGFWLGFIIGLSAAALMLGQ 441

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.85
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.69

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.85  E-value=2.9e-21  Score=154.23  Aligned_cols=149  Identities=26%  Similarity=0.346  Sum_probs=139.7

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      +++..|.+++++|+||+|++++..+.+..+++.+++++++.++++++++..+|++|+++.+.+.+++++++++.++++++
T Consensus       294 ~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~  373 (460)
T 3mkt_A          294 GAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQ  373 (460)
T ss_dssp             HHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHH----cC-CCcchhHHHHHHHHHHHHHHHHHHHhhcC
Q 035802           82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFA----VH-LRTKGLLLGLMSGSTVQAVALAVVTSLTN  150 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~  150 (174)
                      .+..++++|.||++.++..++++.+++++|+++++...    ++ +|+.|+|+++.+++.+..++..+.++|..
T Consensus       374 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          374 VVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999789999999999876    66 99999999999999998887766655543

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.69  E-value=1.1e-16  Score=127.67  Aligned_cols=146  Identities=11%  Similarity=0.104  Sum_probs=134.2

Q ss_pred             chhHHhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhchhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 035802            2 EIFCSIRVSNELGAGNPQPARLATRVAVALAVAEAAIVSIALFCSRYVLAYAFNSDQDVVKYVSRLAPLLSIAIFMDNMQ   81 (174)
Q Consensus         2 ~~a~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (174)
                      +.+..+.++|++|++|+|++++..+.++.+.+.++++++++ +.+.+++..+++.|++..+.+..|+++.+++.++..+.
T Consensus        68 ~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~  146 (460)
T 3mkt_A           68 LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLF  146 (460)
T ss_dssp             HHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999998865 78899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHHH----cCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 035802           82 SVLSGVARGIGWQHIGAYINLGAFYLVGIPVAYVLCFA----VHLRTKGLLLGLMSGSTVQAVALAVVTSLT  149 (174)
Q Consensus        82 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~  149 (174)
                      .++.+++||.||++.++..++++ .++++++++++.+.    +++|+.|+.+++.+++.+..++...+++++
T Consensus       147 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~  217 (460)
T 3mkt_A          147 QALRSFTDGMSLTKPAMVIGFIG-LLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS  217 (460)
T ss_dssp             HHHTTTTCTTSCCTTTHHHHHHH-HHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHH-HHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999 78999999999764    379999999999999999988877776654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00