Citrus Sinensis ID: 035820

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
MESSSSTVLFLPSPVELQGQRDHCGVSLVDSSLWQKQTNLPVEFTWSKGDLVSSHGELMEPVVDLEGFFRGDEVATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLKAQRMPGNMWGYSGAHADRFCSKLPWKETLSFGFDDCSLNPMVVNFFNSNIGKDFEQTGIIYQKYCEAMKCLSLGITELLAISLGINDRLHYREFFEEGCSIMRCNNYPTCQASDLALGTGPHCDPTSLTILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRFTERRSLAFFLCPREDKVVRPPQDLICRQGTRIYPDFTWSDLLEFTQKHYRSDYATLENFTKWLLTSKPTAKF
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHcccccccEEEEEcccccccccccccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccEEEEEccccccccccccccccccccccccEEEEccccccEEEEEccEEEEEccccccEEEEEHHHHHHHHcccccccccEEEEcccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHccccccc
cccccccccccccccHcccccccccccHHHHHHHcccccccHHcEccccccccccccccccEEEHHHHccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccEEEEcccccccccccccHHHHEEEEEcccccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEccccccEEccHHHcccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccc
messsstvlflpspvelqgqrdhcgvslvdsslwqkqtnlpveftwskgdlvsshgelmepvvdlegffrgdeVATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDnffklptsrklkaqrmpgnmwgysgahadrfcsklpwketlsfgfddcslnpmvVNFFnsnigkdfeqTGIIYQKYCEAMKCLSLGITELLAISLGINDRLHYREFFEEGcsimrcnnyptcqasdlalgtgphcdptsltilhqdqvgglevfannrwqsvrprddalvINIGDtftalsngkymsCLHRAVVNRFTERRSLAfflcpredkvvrppqdlicrqgtriypdftwsdLLEFTQKHYRSDYATLENFTKWLltskptakf
messsstvLFLPSPVELQGQRDHCGVSLVDSSLWQKQTNLPVEFTWSKGDLVSSHGELMEPVVDLEGFFRGDEVATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLKAQRMPGNMWGYSGAHADRFCSKLPWKETLSFGFDDCSLNPMVVNFFNSNIGKDFEQTGIIYQKYCEAMKCLSLGITELLAISLGINDRLHYREFFEEGCSIMRCNNYPTCQASDLALGTGPHCDPTSLTILHQDQVGGLEVFAnnrwqsvrprddalvINIGDTFtalsngkymSCLHRAVVNRFTERRSLAFflcpredkvvrppqdlicrqgtriypdfTWSDLLEFTQKHYRSDYATLEnftkwlltskptakf
MESSSSTVLFLPSPVELQGQRDHCGVSLVDSSLWQKQTNLPVEFTWSKGDLVSSHGELMEPVVDLEGFFRGDEVATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLKAQRMPGNMWGYSGAHADRFCSKLPWKETLSFGFDDCSLNPMVVNFFNSNIGKDFEQTGIIYQKYCEAMKCLSLGITELLAISLGINDRLHYREFFEEGCSIMRCNNYPTCQASDLALGTGPHCDPTSLTILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRFTERRSLAFFLCPREDKVVRPPQDLICRQGTRIYPDFTWSDLLEFTQKHYRSDYATLENFTKWLLTSKPTAKF
*******************QRDHCGVSLVDSSLWQKQTNLPVEFTWSKGDLVSSHGELMEPVVDLEGFFRGDEVATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLKAQRMPGNMWGYSGAHADRFCSKLPWKETLSFGFDDCSLNPMVVNFFNSNIGKDFEQTGIIYQKYCEAMKCLSLGITELLAISLGINDRLHYREFFEEGCSIMRCNNYPTCQASDLALGTGPHCDPTSLTILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRFTERRSLAFFLCPREDKVVRPPQDLICRQGTRIYPDFTWSDLLEFTQKHYRSDYATLENFTKWLLT*******
********************************L****TNLPVEFTW*K*D******ELMEPVVDLEGFFRGDEVATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLKAQRMPGNMWGYSGAHADRFCSKLPWKETLSFGFDDCSLNPMVVNFFNSNIGKDFEQTGIIYQKYCEAMKCLSLGITELLAISLGINDRLHYREFFEEGCSIMRCNNYPTCQASDLALGTGPHCDPTSLTILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRFTERRSLAFFLCPREDKVVRPPQDLICRQGTRIYPDFTWSDLLEFTQKHYRSDYATLENFTKW**********
********LFLPSPVELQGQRDHCGVSLVDSSLWQKQTNLPVEFTWSKGDLVSSHGELMEPVVDLEGFFRGDEVATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLKAQRMPGNMWGYSGAHADRFCSKLPWKETLSFGFDDCSLNPMVVNFFNSNIGKDFEQTGIIYQKYCEAMKCLSLGITELLAISLGINDRLHYREFFEEGCSIMRCNNYPTCQASDLALGTGPHCDPTSLTILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRFTERRSLAFFLCPREDKVVRPPQDLICRQGTRIYPDFTWSDLLEFTQKHYRSDYATLENFTKWLLTSKPTAKF
************************GVSLVDSSLWQKQTNLPVEFTWSKGDLVSSHGELMEPVVDLEGFFRGDEVATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLKAQRMPGNMWGYSGAHADRFCSKLPWKETLSFGFDDCSLNPMVVNFFNSNIGKDFEQTGIIYQKYCEAMKCLSLGITELLAISLGINDRLHYREFFEEGCSIMRCNNYPTCQASDLALGTGPHCDPTSLTILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRFTERRSLAFFLCPREDKVVRPPQDLICRQGTRIYPDFTWSDLLEFTQKHYRSDYATLENFTKWLLTSKP****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MESSSSTVLFLPSPVELQGQRDHCGVSLVDSSLWQKQTNLPVEFTWSKGDLVSSHGELMEPVVDLEGFFRGDEVATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLKAQRMPGNMWGYSGAHADRFCSKLPWKETLSFGFDDCSLNPMVVNFFNSNIGKDFEQTGIIYQKYCEAMKCLSLGITELLAISLGINDRLHYREFFEEGCSIMRCNNYPTCQASDLALGTGPHCDPTSLTILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRFTERRSLAFFLCPREDKVVRPPQDLICRQGTRIYPDFTWSDLLEFTQKHYRSDYATLENFTKWLLTSKPTAKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query382 2.2.26 [Sep-21-2011]
Q39111378 Gibberellin 20 oxidase 2 yes no 0.918 0.928 0.532 1e-109
O04705361 Gibberellin 20 oxidase 1- N/A no 0.908 0.961 0.518 1e-104
Q0JH50389 Gibberellin 20 oxidase 2 yes no 0.876 0.861 0.573 1e-104
P0C5H5389 Gibberellin 20 oxidase 2 N/A no 0.876 0.861 0.573 1e-104
O04707365 Gibberellin 20 oxidase 1- N/A no 0.900 0.942 0.52 1e-104
O04706365 Gibberellin 20 oxidase 1- N/A no 0.900 0.942 0.522 1e-104
Q39110377 Gibberellin 20 oxidase 1 no no 0.908 0.920 0.532 1e-103
Q39112380 Gibberellin 20 oxidase 3 no no 0.905 0.910 0.515 1e-103
P93771372 Gibberellin 20 oxidase 1 no no 0.892 0.916 0.483 5e-91
O49561338 Gibberellin 2-beta-dioxyg no no 0.719 0.813 0.328 5e-39
>sp|Q39111|GAOX2_ARATH Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1 Back     alignment and function desciption
 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/359 (53%), Positives = 252/359 (70%), Gaps = 8/359 (2%)

Query: 20  QRDHCGVSLVDSSLWQKQTNLPVEFTWSKGDLVSSH-GELMEPVVDLEGFFRGDEVATQR 78
           ++D     + + SL   Q+ +P +F W   +  S    EL  P +DL       + +T  
Sbjct: 22  EKDQTSPLIFNPSLLNLQSQIPNQFIWPDEEKPSIDIPELNVPFIDLSS-----QDSTLE 76

Query: 79  AARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLKAQRMPGNMWGYSG 138
           A R+I +AC  HGFF V+NHG+  SLI+ AH  +++FF +P + K KAQR PG   GY+ 
Sbjct: 77  APRVIAEACTKHGFFLVVNHGVSESLIADAHRLMESFFDMPLAGKQKAQRKPGESCGYAS 136

Query: 139 AHADRFCSKLPWKETLSFGF-DDCSLNPMVVNFFNSNIGKDFEQTGIIYQKYCEAMKCLS 197
           +   RF +KLPWKETLSF F +D S +  V ++F+  +G++FEQ G +YQ YCEAM  LS
Sbjct: 137 SFTGRFSTKLPWKETLSFQFSNDNSGSRTVQDYFSDTLGQEFEQFGKVYQDYCEAMSSLS 196

Query: 198 LGITELLAISLGINDRLHYREFFEEGCSIMRCNNYPTCQASDLALGTGPHCDPTSLTILH 257
           L I ELL +SLG+N R ++R FFEE  SIMR N+YP CQ  DL LGTGPHCDP+SLTILH
Sbjct: 197 LKIMELLGLSLGVN-RDYFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSLTILH 255

Query: 258 QDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRFTERRSLA 317
           QD V GL+VF +N+WQS+RP   A V+NIGDTF ALSNG + SCLHRAVVNR + R+S+A
Sbjct: 256 QDHVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESARKSMA 315

Query: 318 FFLCPREDKVVRPPQDLICRQGTRIYPDFTWSDLLEFTQKHYRSDYATLENFTKWLLTS 376
           FFLCP++DKVV+PP D++ +  TR YPDFTWS  LEFTQKHYR+D  TL++F+ W++T+
Sbjct: 316 FFLCPKKDKVVKPPSDILEKMKTRKYPDFTWSMFLEFTQKHYRADVNTLDSFSNWVITN 374
Key oxidase enzyme in the biosynthesis of gibberellin that catalyzes the conversion of GA12 and GA53 to GA9 and GA20 respectively, via a three-step oxidation at C-20 of the GA skeleton. GA53 is less effectively oxidized than GA12, and GA25 is also formed as a minor product.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|O04705|GAO1D_WHEAT Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1 Back     alignment and function description
>sp|Q0JH50|GAOX2_ORYSJ Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1 Back     alignment and function description
>sp|P0C5H5|GAOX2_ORYSI Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1 Back     alignment and function description
>sp|O04707|GAO1A_WHEAT Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1 Back     alignment and function description
>sp|O04706|GAO1B_WHEAT Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1 Back     alignment and function description
>sp|Q39110|GAOX1_ARATH Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2 Back     alignment and function description
>sp|Q39112|GAOX3_ARATH Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1 Back     alignment and function description
>sp|P93771|GAOX1_ORYSJ Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2 Back     alignment and function description
>sp|O49561|G2OX8_ARATH Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query382
225459697378 PREDICTED: gibberellin 20 oxidase 2 [Vit 0.979 0.989 0.682 1e-154
147916856381 GA 20-oxidase [Paeonia suffruticosa] 0.979 0.981 0.678 1e-151
255572455387 gibberellin 20-oxidase, putative [Ricinu 0.986 0.974 0.643 1e-148
224096043378 gibberellin 20-oxidase [Populus trichoca 0.981 0.992 0.651 1e-147
224083474379 gibberellin 20-oxidase [Populus trichoca 0.931 0.939 0.669 1e-145
224082360341 gibberellin 20-oxidase [Populus trichoca 0.890 0.997 0.706 1e-145
68509984372 GA 20-oxidase [Sesbania rostrata] 0.905 0.930 0.680 1e-144
255558510354 gibberellin 20-oxidase, putative [Ricinu 0.892 0.963 0.709 1e-144
356507626358 PREDICTED: gibberellin 20 oxidase 2-like 0.890 0.949 0.674 1e-140
356547136375 PREDICTED: gibberellin 20 oxidase 2-like 0.908 0.925 0.668 1e-139
>gi|225459697|ref|XP_002284681.1| PREDICTED: gibberellin 20 oxidase 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 258/378 (68%), Positives = 315/378 (83%), Gaps = 4/378 (1%)

Query: 1   MESSSSTVLFLPSPVELQGQRDHCGVSLVDSSLWQKQTNLPVEFTWSKGDLVSSHGELME 60
           M+  +ST+L    P+EL  +++H GVS  DSS ++KQ N+P+EF W+KG++  +H EL E
Sbjct: 1   MDLGASTLLC--PPLELTDKKEH-GVSPSDSSFFKKQPNIPMEFIWAKGEVGHAHEELRE 57

Query: 61  PVVDLEGFFRGDEVATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPT 120
           PVVDLEGFF GDEVATQ AA +++ AC++HGFFQVINH +D  LI+ AHD ++ FFKLP 
Sbjct: 58  PVVDLEGFFSGDEVATQHAAMLVRSACLNHGFFQVINHRVDPHLITVAHDHMEAFFKLPW 117

Query: 121 SRKLKAQRMPGNMWGYSGAHADRFCSKLPWKETLSFGFDDCSLNPMVVNFFNSNIGKDFE 180
           S+KL+AQR PG++WGYSGAHADRF  KLPWKETLSFGF +     +V +FF S +G++FE
Sbjct: 118 SKKLRAQRKPGSLWGYSGAHADRFSLKLPWKETLSFGFHENGSESVVEDFFKSTLGEEFE 177

Query: 181 QTGIIYQKYCEAMKCLSLGITELLAISLGINDRLHYREFFEEGCSIMRCNNYPTCQASDL 240
           QTG++YQKYC+AMK LSL + ELLAISLG+ DRLHYR+FFE+G SIMRCN YP CQ   L
Sbjct: 178 QTGLVYQKYCQAMKDLSLVLMELLAISLGV-DRLHYRKFFEDGSSIMRCNYYPPCQEPGL 236

Query: 241 ALGTGPHCDPTSLTILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMS 300
           A GTGPHCDPTSLTILHQDQVGGLEV+ NN+W+++RPR DALVIN+GDTF ALSNG+Y S
Sbjct: 237 AFGTGPHCDPTSLTILHQDQVGGLEVYVNNKWRTIRPRCDALVINLGDTFKALSNGRYKS 296

Query: 301 CLHRAVVNRFTERRSLAFFLCPREDKVVRPPQDLICRQGTRIYPDFTWSDLLEFTQKHYR 360
           CLHRAVVNR+ ERRSL FF+CPRE+KVV PPQDL+CR+GTR YPDF WSDLLEFTQK+YR
Sbjct: 297 CLHRAVVNRYKERRSLVFFVCPRENKVVTPPQDLVCREGTRKYPDFKWSDLLEFTQKYYR 356

Query: 361 SDYATLENFTKWLLTSKP 378
           +D ATL+NFTKWLL+S P
Sbjct: 357 ADDATLQNFTKWLLSSNP 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147916856|gb|ABQ52488.1| GA 20-oxidase [Paeonia suffruticosa] Back     alignment and taxonomy information
>gi|255572455|ref|XP_002527163.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223533472|gb|EEF35218.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224096043|ref|XP_002310523.1| gibberellin 20-oxidase [Populus trichocarpa] gi|222853426|gb|EEE90973.1| gibberellin 20-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224083474|ref|XP_002307041.1| gibberellin 20-oxidase [Populus trichocarpa] gi|222856490|gb|EEE94037.1| gibberellin 20-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224082360|ref|XP_002306662.1| gibberellin 20-oxidase [Populus trichocarpa] gi|222856111|gb|EEE93658.1| gibberellin 20-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|68509984|gb|AAY98356.1| GA 20-oxidase [Sesbania rostrata] Back     alignment and taxonomy information
>gi|255558510|ref|XP_002520280.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223540499|gb|EEF42066.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356507626|ref|XP_003522565.1| PREDICTED: gibberellin 20 oxidase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356547136|ref|XP_003541973.1| PREDICTED: gibberellin 20 oxidase 2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query382
TAIR|locus:2165341378 GA20OX2 "gibberellin 20 oxidas 0.918 0.928 0.532 2.1e-100
TAIR|locus:2005511377 GA20OX1 [Arabidopsis thaliana 0.908 0.920 0.532 5.9e-96
TAIR|locus:2182875380 GA20OX3 "gibberellin 20-oxidas 0.905 0.910 0.515 2e-95
TAIR|locus:2037159385 GA20OX5 "gibberellin 20-oxidas 0.973 0.966 0.482 2.3e-94
TAIR|locus:2206036376 GA20OX4 "gibberellin 20-oxidas 0.895 0.909 0.522 6.1e-94
UNIPROTKB|Q6L4Y3408 OSJNBb0092E21.11 "Putative gib 0.921 0.862 0.502 2.5e-90
UNIPROTKB|P93771372 20ox1 "Gibberellin 20 oxidase 0.887 0.911 0.494 1.7e-84
UNIPROTKB|Q69LD8367 OSJNBa0050F10.19 "Putative gib 0.876 0.912 0.460 1e-82
TAIR|locus:2085879349 AT3G19010 [Arabidopsis thalian 0.769 0.842 0.345 3.3e-40
TAIR|locus:2085864352 AT3G19000 [Arabidopsis thalian 0.856 0.928 0.331 6.8e-40
TAIR|locus:2165341 GA20OX2 "gibberellin 20 oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 191/359 (53%), Positives = 252/359 (70%)

Query:    20 QRDHCGVSLVDSSLWQKQTNLPVEFTWSKGDLVSSH-GELMEPVVDLEGFFRGDEVATQR 78
             ++D     + + SL   Q+ +P +F W   +  S    EL  P +DL       + +T  
Sbjct:    22 EKDQTSPLIFNPSLLNLQSQIPNQFIWPDEEKPSIDIPELNVPFIDLSS-----QDSTLE 76

Query:    79 AARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLKAQRMPGNMWGYSG 138
             A R+I +AC  HGFF V+NHG+  SLI+ AH  +++FF +P + K KAQR PG   GY+ 
Sbjct:    77 APRVIAEACTKHGFFLVVNHGVSESLIADAHRLMESFFDMPLAGKQKAQRKPGESCGYAS 136

Query:   139 AHADRFCSKLPWKETLSFGF-DDCSLNPMVVNFFNSNIGKDFEQTGIIYQKYCEAMKCLS 197
             +   RF +KLPWKETLSF F +D S +  V ++F+  +G++FEQ G +YQ YCEAM  LS
Sbjct:   137 SFTGRFSTKLPWKETLSFQFSNDNSGSRTVQDYFSDTLGQEFEQFGKVYQDYCEAMSSLS 196

Query:   198 LGITELLAISLGINDRLHYREFFEEGCSIMRCNNYPTCQASDLALGTGPHCDPTSLTILH 257
             L I ELL +SLG+N R ++R FFEE  SIMR N+YP CQ  DL LGTGPHCDP+SLTILH
Sbjct:   197 LKIMELLGLSLGVN-RDYFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPHCDPSSLTILH 255

Query:   258 QDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRFTERRSLA 317
             QD V GL+VF +N+WQS+RP   A V+NIGDTF ALSNG + SCLHRAVVNR + R+S+A
Sbjct:   256 QDHVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESARKSMA 315

Query:   318 FFLCPREDKVVRPPQDLICRQGTRIYPDFTWSDLLEFTQKHYRSDYATLENFTKWLLTS 376
             FFLCP++DKVV+PP D++ +  TR YPDFTWS  LEFTQKHYR+D  TL++F+ W++T+
Sbjct:   316 FFLCPKKDKVVKPPSDILEKMKTRKYPDFTWSMFLEFTQKHYRADVNTLDSFSNWVITN 374
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009639 "response to red or far red light" evidence=IEP
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:0009826 "unidimensional cell growth" evidence=IGI
GO:0009908 "flower development" evidence=IGI
GO:0080167 "response to karrikin" evidence=IEP
GO:0009686 "gibberellin biosynthetic process" evidence=IDA
GO:0045544 "gibberellin 20-oxidase activity" evidence=IDA
TAIR|locus:2005511 GA20OX1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182875 GA20OX3 "gibberellin 20-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037159 GA20OX5 "gibberellin 20-oxidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206036 GA20OX4 "gibberellin 20-oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6L4Y3 OSJNBb0092E21.11 "Putative gibberellin 20-oxidase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P93771 20ox1 "Gibberellin 20 oxidase 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q69LD8 OSJNBa0050F10.19 "Putative gibberellin 20-dioxygenase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2085879 AT3G19010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085864 AT3G19000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0C5H5GAOX2_ORYSI1, ., 1, 4, ., 1, 1, ., -0.57350.87690.8611N/Ano
O04705GAO1D_WHEAT1, ., 1, 4, ., 1, 1, ., -0.51840.90830.9612N/Ano
O04706GAO1B_WHEAT1, ., 1, 4, ., 1, 1, ., -0.52280.90050.9424N/Ano
O04707GAO1A_WHEAT1, ., 1, 4, ., 1, 1, ., -0.520.90050.9424N/Ano
Q39111GAOX2_ARATH1, ., 1, 4, ., 1, 1, ., -0.53200.91880.9285yesno
Q0JH50GAOX2_ORYSJ1, ., 1, 4, ., 1, 1, ., -0.57350.87690.8611yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.691
4th Layer1.14.11.9LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query382
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 0.0
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-57
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-52
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 7e-48
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 2e-47
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-44
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 1e-43
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-41
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-41
PLN02216357 PLN02216, PLN02216, protein SRG1 1e-38
PLN02904357 PLN02904, PLN02904, oxidoreductase 6e-35
PLN02704335 PLN02704, PLN02704, flavonol synthase 8e-35
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-34
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 6e-34
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 7e-32
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 6e-31
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 3e-30
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 8e-30
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 3e-29
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 7e-29
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 5e-26
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 3e-25
PLN02997325 PLN02997, PLN02997, flavonol synthase 4e-23
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-22
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-20
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 1e-17
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 4e-17
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 2e-07
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information 
 Score =  670 bits (1730), Expect = 0.0
 Identities = 229/358 (63%), Positives = 281/358 (78%), Gaps = 3/358 (0%)

Query: 25  GVSLVDSSLWQKQTNLPVEFTWSKGD-LVSSHGELMEPVVDLEGFFRGDEVATQRAARII 83
           G  + D+S+ QKQ+N+P +F W   +   ++  EL  P++DL GF  GDE AT  AAR++
Sbjct: 5   GSLVFDASVLQKQSNIPAQFIWPDEEKPSAAVPELAVPLIDLGGFLSGDEAATAEAARLV 64

Query: 84  KDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLKAQRMPGNMWGYSGAHADR 143
           ++AC+ HGFFQV+NHG+DA+LI AAH+ +D FFKLP S K +AQR PG   GY+ +H  R
Sbjct: 65  REACLKHGFFQVVNHGVDAALIRAAHEYMDAFFKLPLSEKQRAQRKPGESCGYASSHTGR 124

Query: 144 FCSKLPWKETLSFGF-DDCSLNPMVVNFFNSNIGKDFEQTGIIYQKYCEAMKCLSLGITE 202
           F SKLPWKETLSFG+  D   +P+VV++F S +G+DFEQ G +YQ+YCEAMK LSL I E
Sbjct: 125 FSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCEAMKTLSLKIME 184

Query: 203 LLAISLGINDRLHYREFFEEGCSIMRCNNYPTCQASDLALGTGPHCDPTSLTILHQDQVG 262
           LL ISLG+ DR +YR+FFE+G SIMRCN YP CQ  +L LGTGPHCDPTSLTILHQDQVG
Sbjct: 185 LLGISLGV-DRGYYRKFFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQVG 243

Query: 263 GLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRFTERRSLAFFLCP 322
           GL+VF +N+W+SVRPR  ALV+NIGDTF ALSNG+Y SCLHRAVVN   ERRSLAFFLCP
Sbjct: 244 GLQVFVDNKWRSVRPRPGALVVNIGDTFMALSNGRYKSCLHRAVVNSERERRSLAFFLCP 303

Query: 323 REDKVVRPPQDLICRQGTRIYPDFTWSDLLEFTQKHYRSDYATLENFTKWLLTSKPTA 380
           +EDKVVRPPQ+L+ R+G R YPDFTWSDLLEFTQKHYR+D  TL+ F+ WL +S   A
Sbjct: 304 KEDKVVRPPQELVDREGPRKYPDFTWSDLLEFTQKHYRADMNTLQAFSNWLQSSNNKA 361

Length = 361
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 382
PLN02276361 gibberellin 20-oxidase 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02216357 protein SRG1 100.0
PLN02947374 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02904357 oxidoreductase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02704335 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.92
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PLN03176120 flavanone-3-hydroxylase; Provisional 99.9
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.29
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.72
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 94.36
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 91.44
TIGR02466201 conserved hypothetical protein. This family consis 86.05
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 82.41
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information 
Probab=100.00  E-value=3.1e-84  Score=632.17  Aligned_cols=342  Identities=65%  Similarity=1.146  Sum_probs=307.6

Q ss_pred             cCCCCCCCccCCCCCCCCC-CCCCCCceeeCCCCCCCCHHHHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHHHHHhhh
Q 035820           36 KQTNLPVEFTWSKGDLVSS-HGELMEPVVDLEGFFRGDEVATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDN  114 (382)
Q Consensus        36 ~~~~vP~~~i~p~~~~~~~-~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~  114 (382)
                      ...+||..|++|.+++|.. ....+||||||+.+.++|+++|.+++++|.+||++||||||+||||+.++++++++++++
T Consensus        16 ~~~~vp~~~~~~~~~~p~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~   95 (361)
T PLN02276         16 KQSNIPAQFIWPDEEKPSAAVPELAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDA   95 (361)
T ss_pred             CCCCCCHHhcCCccccCCCCCcCCCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4468999999999998863 234689999999998777778889999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHhhccCCCCCCccccCCCCCccCCCCCceeceeccccCCCC-CccccccccCCCCcchhhHHHHHHHHHHHH
Q 035820          115 FFKLPTSRKLKAQRMPGNMWGYSGAHADRFCSKLPWKETLSFGFDDCSL-NPMVVNFFNSNIGKDFEQTGIIYQKYCEAM  193 (382)
Q Consensus       115 FF~lP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~~~-~~~~~~wP~~~~~~~~~~fr~~~~~y~~~~  193 (382)
                      ||+||.|+|+++....+..+||.....+..++..||+|.|.++..+... ......|+.+.||+++++||+.+++|+..|
T Consensus        96 FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~y~~~~  175 (361)
T PLN02276         96 FFKLPLSEKQRAQRKPGESCGYASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCEAM  175 (361)
T ss_pred             HHcCCHHHHHhhccCCCCccccCccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHHHHHHHHHHHHHH
Confidence            9999999999997765567899876665555677999999997654321 111224555667777889999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCChhhHHHHhhccCceeEEeccCCCCCCCCCccccCCCCCCceeEEecCCCCceEEEeCCeEE
Q 035820          194 KCLSLGITELLAISLGINDRLHYREFFEEGCSIMRCNNYPTCQASDLALGTGPHCDPTSLTILHQDQVGGLEVFANNRWQ  273 (382)
Q Consensus       194 ~~l~~~ll~~la~~Lg~l~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~~~lTlL~qd~~~GLqv~~~g~W~  273 (382)
                      .+|+..||++|+++|| |++++|.+.+....+.||++|||+|+.++..+|+++|||+|+||||+||+++||||+.+|+|+
T Consensus       176 ~~l~~~ll~~la~~Lg-l~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~g~Wi  254 (361)
T PLN02276        176 KTLSLKIMELLGISLG-VDRGYYRKFFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQVGGLQVFVDNKWR  254 (361)
T ss_pred             HHHHHHHHHHHHHHcC-CCHHHHHHHhcCccceeeeEeCCCCCCcccccCCccccCCceeEEEEecCCCceEEEECCEEE
Confidence            9999999999999999 999999999988889999999999999988999999999999999999999999999999999


Q ss_pred             EeccCCCceEEecccccccccCCeecCcccccccCCCCCeEEEEeeecCCCCceeeCCCCccCCCCCCCCCCCCHHHHHH
Q 035820          274 SVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRFTERRSLAFFLCPREDKVVRPPQDLICRQGTRIYPDFTWSDLLE  353 (382)
Q Consensus       274 ~V~p~pg~~vVnvGd~le~~SnG~~kS~~HRV~~~~~~~R~Si~~F~~P~~d~~i~p~~~~v~~~~p~~y~~~~~~e~~~  353 (382)
                      +|+|++|++|||+||+||+||||+|||++|||++++.++|||++||++|+.|++|.|+++|+++++|++|++++|+||++
T Consensus       255 ~V~p~pgalVVNiGD~L~~~TNG~~kSt~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~~~ey~~  334 (361)
T PLN02276        255 SVRPRPGALVVNIGDTFMALSNGRYKSCLHRAVVNSERERRSLAFFLCPKEDKVVRPPQELVDREGPRKYPDFTWSDLLE  334 (361)
T ss_pred             EcCCCCCeEEEEcHHHHHHHhCCccccccceeecCCCCCEEEEEEEecCCCCCEEeCChHhcCCCCCCcCCCCCHHHHHH
Confidence            99999999999999999999999999999999998889999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhHHHHHHhHhhcCC
Q 035820          354 FTQKHYRSDYATLENFTKWLLTSKP  378 (382)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~  378 (382)
                      +...+...++..++.|+.|....|.
T Consensus       335 ~~~~~~~~~~~~l~~~~~~~~~~~~  359 (361)
T PLN02276        335 FTQKHYRADMNTLQAFSNWLQSSNN  359 (361)
T ss_pred             HHHHhcccchhHHHHHHHHHhccCC
Confidence            9888888888889999999876554

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query382
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-32
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-32
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 4e-30
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-23
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 4e-15
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 2e-12
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 3e-12
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 4e-04
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  135 bits (339), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 166/350 (47%), Gaps = 32/350 (9%)
Query: 24  CGVSLVDSSLWQKQTNLPVEFTWSKGDLVSSHGELME---------PVVDLEGFFRGDEV 74
             V  V+S       ++P E+   K +L S +   +E         P +DL+     DE 
Sbjct: 2   VAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEK 61
Query: 75  ATQRAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLK--AQRMPGN 132
             +     +K A +  G   +INHGI A L+       + FF L    K K    +  G 
Sbjct: 62  IRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGK 121
Query: 133 MWGYSGAHADRFCSKLPWKET---LSFGFD--DCSLNPMVVNFFNSNIGKDFEQTGIIYQ 187
           + GY    A+    +L W++    L++  +  D S+ P   + +        E T     
Sbjct: 122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY-------IEATS---- 170
Query: 188 KYCEAMKCLSLGITELLAISLGIN-DRLHYREF--FEEGCSIMRCNNYPTCQASDLALGT 244
           +Y + ++ L+  + + L++ LG+  DRL  +E    EE    M+ N YP C   +LALG 
Sbjct: 171 EYAKCLRLLATKVFKALSVGLGLEPDRLE-KEVGGLEELLLQMKINYYPKCPQPELALGV 229
Query: 245 GPHCDPTSLTILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHR 304
             H D ++LT +  + V GL++F   +W + +   D++V++IGDT   LSNGKY S LHR
Sbjct: 230 EAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHR 289
Query: 305 AVVNRFTERRSLAFFLCPREDKVV-RPPQDLICRQGTRIYPDFTWSDLLE 353
            +VN+   R S A F  P +DK+V +P  +++  +    +P  T++  +E
Sbjct: 290 GLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 339
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query382
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-121
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 3e-96
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-90
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 4e-71
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-67
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 4e-63
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  354 bits (910), Expect = e-121
 Identities = 94/359 (26%), Positives = 159/359 (44%), Gaps = 29/359 (8%)

Query: 27  SLVDSSLWQKQTNLPVEFTWSKGDLVSSHGELME---------PVVDLEGFFRGDEVATQ 77
           SL  S +     ++P E+   K +L S +   +E         P +DL+     DE   +
Sbjct: 9   SLAKSGI----ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRE 64

Query: 78  RAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRKLK--AQRMPGNMWG 135
                +K A +  G   +INHGI A L+       + FF L    K K    +  G + G
Sbjct: 65  NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124

Query: 136 YSGAHADRFCSKLPWKETLSFGFDDCSLNPMVVNFFNSNIGKDFEQTGIIYQKYCEAMKC 195
           Y    A+    +L W++             +      S   K          +Y + ++ 
Sbjct: 125 YGSKLANNASGQLEWEDYFFHLAYPEEKRDL------SIWPKTPSDYIEATSEYAKCLRL 178

Query: 196 LSLGITELLAISLGINDRLHYREFF---EEGCSIMRCNNYPTCQASDLALGTGPHCDPTS 252
           L+  + + L++ LG+ +     +     EE    M+ N YP C   +LALG   H D ++
Sbjct: 179 LATKVFKALSVGLGL-EPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSA 237

Query: 253 LTILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRFTE 312
           LT +  + V GL++F   +W + +   D++V++IGDT   LSNGKY S LHR +VN+   
Sbjct: 238 LTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKV 297

Query: 313 RRSLAFFLCPREDKVV-RPPQDLICRQGTRIYPDFTWSDLLE--FTQKHYRSDYATLEN 368
           R S A F  P +DK+V +P  +++  +    +P  T++  +E     K    +  + +N
Sbjct: 298 RISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQE-ELVSEKN 355
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query382
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.43
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 92.05
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 88.82
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 85.32
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 84.18
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 80.07
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=7.4e-84  Score=628.93  Aligned_cols=330  Identities=26%  Similarity=0.408  Sum_probs=298.6

Q ss_pred             chhhhhhccCCCCCCCccCCCCCCCCCCC---------CCCCceeeCCCCCCCCHHHHHHHHHHHHHHHhhcCeEEEEeC
Q 035820           28 LVDSSLWQKQTNLPVEFTWSKGDLVSSHG---------ELMEPVVDLEGFFRGDEVATQRAARIIKDACMSHGFFQVINH   98 (382)
Q Consensus        28 ~~~~~~~~~~~~vP~~~i~p~~~~~~~~~---------~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFF~v~nH   98 (382)
                      .||+|+++++.+||++||+|.++++....         ..+||||||+.|.++++++|.+++++|.+||++||||||+||
T Consensus         6 ~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nH   85 (356)
T 1gp6_A            6 RVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINH   85 (356)
T ss_dssp             CHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred             cHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCC
Confidence            48999999999999999999988876311         236999999999877888889999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhhhhcCCCHHHHhhccCCC--CCCccccCCCCCccCCCCCceeceeccccCCCCCccccccccCCCC
Q 035820           99 GIDASLISAAHDQIDNFFKLPTSRKLKAQRMP--GNMWGYSGAHADRFCSKLPWKETLSFGFDDCSLNPMVVNFFNSNIG  176 (382)
Q Consensus        99 GI~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~--~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~~~~~~~~~wP~~~~~  176 (382)
                      ||+.++++++++.+++||+||.|+|+++.+..  ...+||+........+..||+|.|+++..|.. ....+.||..+  
T Consensus        86 Gi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~-~~~~~~wP~~~--  162 (356)
T 1gp6_A           86 GIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEE-KRDLSIWPKTP--  162 (356)
T ss_dssp             SCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGG-GCCGGGSCCSS--
T ss_pred             CCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCcc-ccccccCCCcc--
Confidence            99999999999999999999999999998754  35789987765555678899999999876543 23457788643  


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHhh---ccCceeEEeccCCCCCCCCCccccCCCCCCce
Q 035820          177 KDFEQTGIIYQKYCEAMKCLSLGITELLAISLGINDRLHYREFFE---EGCSIMRCNNYPTCQASDLALGTGPHCDPTSL  253 (382)
Q Consensus       177 ~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lg~l~~~~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~~~l  253 (382)
                         +.||+++++|+++|.+|+.+||++|+++|| |++++|.+.+.   ...+.||++|||||++++..+|+++|||+|+|
T Consensus       163 ---~~fr~~~~~y~~~~~~l~~~ll~~la~~Lg-l~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~l  238 (356)
T 1gp6_A          163 ---SDYIEATSEYAKCLRLLATKVFKALSVGLG-LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSAL  238 (356)
T ss_dssp             ---TTHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSE
T ss_pred             ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeE
Confidence               789999999999999999999999999999 99999999987   57789999999999999889999999999999


Q ss_pred             eEEecCCCCceEEEeCCeEEEeccCCCceEEecccccccccCCeecCcccccccCCCCCeEEEEeeecCCCCc-eeeCCC
Q 035820          254 TILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRFTERRSLAFFLCPREDK-VVRPPQ  332 (382)
Q Consensus       254 TlL~qd~~~GLqv~~~g~W~~V~p~pg~~vVnvGd~le~~SnG~~kS~~HRV~~~~~~~R~Si~~F~~P~~d~-~i~p~~  332 (382)
                      |||+||+++||||+++|+|++|+|+||++|||+||+||+||||+|||++|||++++..+|+|++||++|+.|+ +|.|++
T Consensus       239 TlL~qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~  318 (356)
T 1gp6_A          239 TFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP  318 (356)
T ss_dssp             EEEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCG
T ss_pred             EEEEEcCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCCh
Confidence            9999999999999999999999999999999999999999999999999999999889999999999999999 999999


Q ss_pred             CccCCCCCCCCCCCCHHHHHHHHHHhhhhhhh
Q 035820          333 DLICRQGTRIYPDFTWSDLLEFTQKHYRSDYA  364 (382)
Q Consensus       333 ~~v~~~~p~~y~~~~~~e~~~~~~~~~~~~~~  364 (382)
                      +++++++|++|+++||+||++........++.
T Consensus       319 ~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~  350 (356)
T 1gp6_A          319 EMVSVESPAKFPPRTFAQHIEHKLFGKEQEEL  350 (356)
T ss_dssp             GGCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC
T ss_pred             hhcCCCCCccCCCccHHHHHHHHHHhccCcch
Confidence            99999999999999999999876665555544
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 382
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-63
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-52
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-51
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-42
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  204 bits (520), Expect = 2e-63
 Identities = 92/341 (26%), Positives = 153/341 (44%), Gaps = 24/341 (7%)

Query: 27  SLVDSSLWQKQTNLPVEFTWSKGDLVSSHGELME---------PVVDLEGFFRGDEVATQ 77
           SL  S +     ++P E+   K +L S +   +E         P +DL+     DE   +
Sbjct: 8   SLAKSGI----ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRE 63

Query: 78  RAARIIKDACMSHGFFQVINHGIDASLISAAHDQIDNFFKLPTSRK--LKAQRMPGNMWG 135
                +K A +  G   +INHGI A L+       + FF L    K      +  G + G
Sbjct: 64  NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 123

Query: 136 YSGAHADRFCSKLPWKETLSFGFDDCSLNPMVVNFFNSNIGKDFEQTGIIYQKYCEAMKC 195
           Y    A+    +L W++             +      S   K          +Y + ++ 
Sbjct: 124 YGSKLANNASGQLEWEDYFFHLAYPEEKRDL------SIWPKTPSDYIEATSEYAKCLRL 177

Query: 196 LSLGITELLAISLGINDRLHYREF--FEEGCSIMRCNNYPTCQASDLALGTGPHCDPTSL 253
           L+  + + L++ LG+      +E    EE    M+ N YP C   +LALG   H D ++L
Sbjct: 178 LATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSAL 237

Query: 254 TILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRFTER 313
           T +  + V GL++F   +W + +   D++V++IGDT   LSNGKY S LHR +VN+   R
Sbjct: 238 TFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVR 297

Query: 314 RSLAFFLCPREDKVV-RPPQDLICRQGTRIYPDFTWSDLLE 353
            S A F  P +DK+V +P  +++  +    +P  T++  +E
Sbjct: 298 ISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 338
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query382
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 88.81
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 85.6
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=9.5e-80  Score=597.68  Aligned_cols=322  Identities=27%  Similarity=0.432  Sum_probs=287.2

Q ss_pred             ccchhhhhhccCCCCCCCccCCCCCCCCC---------CCCCCCceeeCCCCCCCCHHHHHHHHHHHHHHHhhcCeEEEE
Q 035820           26 VSLVDSSLWQKQTNLPVEFTWSKGDLVSS---------HGELMEPVVDLEGFFRGDEVATQRAARIIKDACMSHGFFQVI   96 (382)
Q Consensus        26 ~~~~~~~~~~~~~~vP~~~i~p~~~~~~~---------~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFF~v~   96 (382)
                      ...|++|+++|+.+||++||+|++++|+.         ....+||||||+.|.++|++.|++++++|++||++||||||+
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~   82 (349)
T d1gp6a_           3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI   82 (349)
T ss_dssp             CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CcchHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEE
Confidence            35699999999999999999999999875         245689999999999999999999999999999999999999


Q ss_pred             eCCCCHHHHHHHHHHhhhhcCCCHHHHhhccCCC--CCCccccCCCCCccCCCCCceeceeccccCCCCCccccccccCC
Q 035820           97 NHGIDASLISAAHDQIDNFFKLPTSRKLKAQRMP--GNMWGYSGAHADRFCSKLPWKETLSFGFDDCSLNPMVVNFFNSN  174 (382)
Q Consensus        97 nHGI~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~--~~~~GY~~~~~~~~~~~~d~kE~f~~~~~p~~~~~~~~~wP~~~  174 (382)
                      ||||+.++++++++++++||+||.|+|+++....  +...||+...........+|.+.+.....+.. ....+.||..+
T Consensus        83 nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~n~wp~~~  161 (349)
T d1gp6a_          83 NHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEE-KRDLSIWPKTP  161 (349)
T ss_dssp             SCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGG-GCCGGGSCCSS
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccc-ccccccccccc
Confidence            9999999999999999999999999999997632  23455655555555667778777654333332 33456677654


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHhh---ccCceeEEeccCCCCCCCCCccccCCCCCC
Q 035820          175 IGKDFEQTGIIYQKYCEAMKCLSLGITELLAISLGINDRLHYREFFE---EGCSIMRCNNYPTCQASDLALGTGPHCDPT  251 (382)
Q Consensus       175 ~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lg~l~~~~~~~~~~---~~~~~lr~~~Yp~~~~~~~~~g~~~HtD~~  251 (382)
                           +.|++.+.+|+++|.+|+.+|+++++++|| +++++|.+.+.   ...+.||++|||+++.+...+|+++|||+|
T Consensus       162 -----~~f~e~~~~~~~~~~~la~~ll~~la~~Lg-l~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g  235 (349)
T d1gp6a_         162 -----SDYIEATSEYAKCLRLLATKVFKALSVGLG-LEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVS  235 (349)
T ss_dssp             -----TTHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCS
T ss_pred             -----chHHHHHHHHHHHHHHHHHhhhHHHHHHcC-CCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCc
Confidence                 789999999999999999999999999999 99999998874   456789999999999988899999999999


Q ss_pred             ceeEEecCCCCceEEEeCCeEEEeccCCCceEEecccccccccCCeecCcccccccCCCCCeEEEEeeecCCCCcee-eC
Q 035820          252 SLTILHQDQVGGLEVFANNRWQSVRPRDDALVINIGDTFTALSNGKYMSCLHRAVVNRFTERRSLAFFLCPREDKVV-RP  330 (382)
Q Consensus       252 ~lTlL~qd~~~GLqv~~~g~W~~V~p~pg~~vVnvGd~le~~SnG~~kS~~HRV~~~~~~~R~Si~~F~~P~~d~~i-~p  330 (382)
                      +||||+||.++||||+++|+|++|+|.+|++|||+||+||+||||+|||++|||+++++++||||+||++|+.|++| .|
T Consensus       236 ~lTlL~q~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~p  315 (349)
T d1gp6a_         236 ALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKP  315 (349)
T ss_dssp             SEEEEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECC
T ss_pred             ceEEEeccCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999865 89


Q ss_pred             CCCccCCCCCCCCCCCCHHHHHHH
Q 035820          331 PQDLICRQGTRIYPDFTWSDLLEF  354 (382)
Q Consensus       331 ~~~~v~~~~p~~y~~~~~~e~~~~  354 (382)
                      +++||++++|++|+++||+||++.
T Consensus       316 l~~~v~~~~p~~y~~~t~~e~~~~  339 (349)
T d1gp6a_         316 LPEMVSVESPAKFPPRTFAQHIEH  339 (349)
T ss_dssp             CGGGCCSSSCCSSCCEEHHHHHHH
T ss_pred             CHHHcCCCCCCCCCCccHHHHHHH
Confidence            999999999999999999999984
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure